BLASTX nr result

ID: Chrysanthemum21_contig00032062 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00032062
         (558 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KVI04979.1| Armadillo-type fold [Cynara cardunculus var. scol...    69   2e-10
ref|XP_023762827.1| protein PIF-like [Lactuca sativa] >gi|134047...    56   5e-06

>gb|KVI04979.1| Armadillo-type fold [Cynara cardunculus var. scolymus]
          Length = 1041

 Score = 69.3 bits (168), Expect = 2e-10
 Identities = 39/94 (41%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = +2

Query: 278 KETDEDSKRRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRDLS-EEDGETKITGNRPEE 454
           K+ DED ++RG                              D S EE GE +  G + EE
Sbjct: 277 KQMDEDRRKRGKNKDIRSDEEDGNDRSNRKKSEDRKRSDEHDQSGEEVGEIRKAGKKHEE 336

Query: 455 KSDEEEGEFRRSGRKGRHEDKSDGEDGEIRKRER 556
           +SDEE+GE R+ GRKG+HE +SD EDGEIRKR R
Sbjct: 337 RSDEEDGEIRKRGRKGKHEGRSDNEDGEIRKRGR 370



 Score = 62.8 bits (151), Expect = 4e-08
 Identities = 31/51 (60%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
 Frame = +2

Query: 410 EEDGETKITGNRP--EEKSDEEEGEFRRSGRKGRHEDKSDGEDGEIRKRER 556
           EEDGE +  G +   E +SD E+GE R+ GRKG+HED SD EDGEIRKR R
Sbjct: 340 EEDGEIRKRGRKGKHEGRSDNEDGEIRKRGRKGKHEDMSDDEDGEIRKRGR 390



 Score = 60.1 bits (144), Expect = 4e-07
 Identities = 29/50 (58%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
 Frame = +2

Query: 413 EDGETKITGNRP--EEKSDEEEGEFRRSGRKGRHEDKSDGEDGEIRKRER 556
           EDGE +  G +   E+ SD+E+GE R+ GRKG+HE +SD EDGEIRKR R
Sbjct: 361 EDGEIRKRGRKGKHEDMSDDEDGEIRKRGRKGKHEGRSDEEDGEIRKRGR 410


>ref|XP_023762827.1| protein PIF-like [Lactuca sativa]
 ref|XP_023762828.1| protein PIF-like [Lactuca sativa]
 ref|XP_023762830.1| protein PIF-like [Lactuca sativa]
 ref|XP_023762831.1| protein PIF-like [Lactuca sativa]
 ref|XP_023762832.1| protein PIF-like [Lactuca sativa]
 ref|XP_023762833.1| protein PIF-like [Lactuca sativa]
          Length = 297

 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 29/49 (59%), Positives = 37/49 (75%)
 Frame = +2

Query: 410 EEDGETKITGNRPEEKSDEEEGEFRRSGRKGRHEDKSDGEDGEIRKRER 556
           EE GE + TG + E+ SDEE+GE R+SGRKG+++DK   E GEIRKR R
Sbjct: 186 EEVGEFRKTGKKNEDISDEEDGEIRKSGRKGKYDDK---EIGEIRKRGR 231


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