BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00029951
         (1709 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. ...   637   0.0  
gb|AAD32898.1| putative retroelement pol polyprotein [Arabidopsi...   596   0.0  
gb|AAC95173.1| putative retroelement pol polyprotein [Arabidopsi...   565   0.0  
gb|OTG20763.1| putative ribonuclease H-like domain, Reverse tran...   548   0.0  
gb|AAO72413.1| gag-pol polyprotein [Oryza sativa Japonica Group]...   538   e-174
dbj|BAG94704.1| unnamed protein product [Oryza sativa Japonica G...   492   e-159
gb|AAU90089.1| putative polyprotein [Oryza sativa Japonica Group]     491   e-158
gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]            496   e-158
dbj|BAF21751.1| Os07g0528100, partial [Oryza sativa Japonica Group]   492   e-158
gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinen...   488   e-158
dbj|GAU26746.1| hypothetical protein TSUD_317440 [Trifolium subt...   498   e-157
gb|KYP74877.1| Retrovirus-related Pol polyprotein from transposo...   484   e-155
gb|PNX77239.1| copia-type polyprotein, partial [Trifolium pratense]   472   e-155
gb|KOM33859.1| hypothetical protein LR48_Vigan02g000900 [Vigna a...   486   e-154
gb|AAF25964.2|AC017118_1 F6N18.1 [Arabidopsis thaliana]               483   e-154
gb|KYP37051.1| Retrovirus-related Pol polyprotein from transposo...   478   e-154
gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinen...   483   e-153
gb|OTG12557.1| putative zinc finger, CCHC-type [Helianthus annuus]    484   e-153
gb|AAM23251.1|AC092553_17 Putative pol polyprotein [Oryza sativa...   485   e-153
emb|CAH66624.1| OSIGBa0115A19.5 [Oryza sativa]                        485   e-153

>gb|ABH07409.1| putative pol polyprotein [Brassica oleracea var. botrytis]
          Length = 1239

 Score =  637 bits (1643), Expect = 0.0
 Identities = 325/556 (58%), Positives = 406/556 (73%), Gaps = 2/556 (0%)
 Frame = -1

Query: 1664 LQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKKS 1485
            L+L+HADLCGPISP ++A+NRYIFV+IDD +R+MW+  LKEK E FE FK FKALVEK+ 
Sbjct: 393  LELLHADLCGPISPSTLAQNRYIFVIIDDNTRYMWSILLKEKSEVFEKFKTFKALVEKEV 452

Query: 1484 GKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSIL 1305
             K I+TLRTDRGGEFTS++F ++C N GI RHLTAPYTPQQNGVVERRNRTLM MTRS+L
Sbjct: 453  NKVIVTLRTDRGGEFTSRDFQDYCNNNGIRRHLTAPYTPQQNGVVERRNRTLMEMTRSML 512

Query: 1304 KARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATGT 1125
            KA +VPNYMW E VRHAT+LINRV TRAL NQTPYE+FKG+KP++  +RVFGC+AYA   
Sbjct: 513  KAMNVPNYMWGEAVRHATYLINRVPTRALKNQTPYESFKGRKPSIGHIRVFGCLAYAKLD 572

Query: 1124 RPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETHE 945
               L KLDDRS  L+++G EPG+K +RL+NP  ++IVV RD +F+E+  W +    + ++
Sbjct: 573  AALLKKLDDRSQTLVHLGIEPGSKAYRLYNPSTRRIVVSRDVKFDEKACWNWNETDKGNQ 632

Query: 944  LNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNTEQEVQFEAGN 765
               G F + W  SID G G   P V    +            +EN    TEQ+   E   
Sbjct: 633  EESGKFHMTWGSSIDEGNG---PFVIGSHQ------------EENIATETEQQ---EETT 674

Query: 764  DPNP-VTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQNLLLIE-DDEPRTFQE 591
            +P P V   +P  RRSSR    P    D+I+       +A  +  LLL   +DEP T+QE
Sbjct: 675  EPTPEVDHVEP--RRSSREVKLPKHLEDYIL-------LAEIECELLLCSINDEPSTYQE 725

Query: 590  AKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSINKFKARLV 411
            AK+  +W  A + EI+SI +N +W+LV+ P  V  IGLKW+FKIKRN DGSINKFKARLV
Sbjct: 726  AKIHVRWTKACEDEIDSINRNQTWKLVDKPHGVKVIGLKWIFKIKRNADGSINKFKARLV 785

Query: 410  AKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGELKEQVFVT 231
            AKGY Q+ GID++EVFAPVARIE++RLLISLA+ + WELHHLDVK+AFLHGEL E+V+VT
Sbjct: 786  AKGYVQEHGIDFEEVFAPVARIESIRLLISLASAKGWELHHLDVKTAFLHGELNEEVYVT 845

Query: 230  QPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQAVYVKKTNK 51
            QPEGF KKGEE K++KL KALYGL+QAPRAWNTKLDR LK + FK+C  E +VY ++   
Sbjct: 846  QPEGFEKKGEEHKVFKLSKALYGLRQAPRAWNTKLDRVLKSLRFKKCMKESSVYRREEGD 905

Query: 50   SILIISVYVDDLLVTG 3
             +LII++YVDDL VTG
Sbjct: 906  KLLIIAIYVDDLFVTG 921


>gb|AAD32898.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1307

 Score =  596 bits (1537), Expect = 0.0
 Identities = 305/558 (54%), Positives = 398/558 (71%), Gaps = 4/558 (0%)
 Frame = -1

Query: 1664 LQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKKS 1485
            L+L+H DLCGPI+  + A+ RYI VLIDD +R+MW+  LKEK EAFE F+ FK  VE++S
Sbjct: 453  LELVHGDLCGPITQSTTAKKRYILVLIDDHTRYMWSMLLKEKSEAFEKFRDFKTKVEQES 512

Query: 1484 GKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSIL 1305
            G KI T RTD+GGEF S+EF +FC  EGI RHLTAPYTPQQNGVVERRNRTL+GMTRSIL
Sbjct: 513  GVKIKTFRTDKGGEFVSQEFQDFCAKEGINRHLTAPYTPQQNGVVERRNRTLLGMTRSIL 572

Query: 1304 KARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATGT 1125
            K   +PNY+W E VRH+T++INRV TR+L NQTPYE FK +KPN+E LRVFGC+ YA   
Sbjct: 573  KHMKMPNYLWGEAVRHSTYIINRVGTRSLQNQTPYEVFKQRKPNVEHLRVFGCIGYAKIE 632

Query: 1124 RPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETHE 945
             P+L KLDDRS  L+Y+G EPG+K +RL +P  +KI+   +++            SET +
Sbjct: 633  GPHLRKLDDRSKMLVYLGTEPGSKAYRLLDPTNRKIIKWNNSD------------SETRD 680

Query: 944  LNPGMFIIEWHGSIDTGCGFVNPGV--TDEVEAE--DQEAENHHDVDENQPVNTEQEVQF 777
            ++ G F      S+  G  F N G+  +D++E E   +E+EN H+ +     N ++++  
Sbjct: 681  IS-GTF------SLTLG-EFGNNGIQESDDIETEKNGEESENSHEEEGENEHNEQEQIDA 732

Query: 776  EAGNDPNPVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQNLLLIEDDEPRTF 597
            E    P+  T   P +RRS+R   KP   +D+++ +        E + +LL  +DEP  F
Sbjct: 733  EE-TQPSHATPL-PTLRRSTRQVGKPNYLDDYVLMAEI------EGEQVLLAINDEPWDF 784

Query: 596  QEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSINKFKAR 417
            +EA    +W  A K+EI SIEKN +W L++ PV    IGLKWVFKIKRN DGSINK+KAR
Sbjct: 785  KEANKLKEWRDACKEEILSIEKNKTWSLIDLPVRRKVIGLKWVFKIKRNSDGSINKYKAR 844

Query: 416  LVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGELKEQVF 237
            LVAKGY Q+ GIDYDEVFA VARIET+R++I+LAA   WE+HHLDVK+AFLHGEL+E V+
Sbjct: 845  LVAKGYVQRHGIDYDEVFAHVARIETIRVIIALAASNGWEVHHLDVKTAFLHGELREDVY 904

Query: 236  VTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQAVYVKKT 57
            VTQPEGF  K  E K+YKL KALYGLKQAPRAWNTKL++ L++++F +C  E +VY ++ 
Sbjct: 905  VTQPEGFTNKDNEGKVYKLHKALYGLKQAPRAWNTKLNKILQELNFVKCSKEPSVYRRQE 964

Query: 56   NKSILIISVYVDDLLVTG 3
             K +LI+++YVDDLLVTG
Sbjct: 965  EKKLLIVAIYVDDLLVTG 982


>gb|AAC95173.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1200

 Score =  565 bits (1456), Expect = 0.0
 Identities = 291/505 (57%), Positives = 358/505 (70%), Gaps = 5/505 (0%)
 Frame = -1

Query: 1664 LQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKKS 1485
            L+LIH DLCGPISPP+ A+ RYI VLIDD SRFMW+F LKEK EAF  FK FKA VE+++
Sbjct: 449  LELIHGDLCGPISPPTAAKRRYILVLIDDHSRFMWSFLLKEKSEAFGKFKTFKATVEQET 508

Query: 1484 GKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSIL 1305
            G+KI TLRTDRGGEF S+EF  FCE EGI RHLTAPYTPQQNGVVERRNRTL+GMTRSI+
Sbjct: 509  GEKIKTLRTDRGGEFLSQEFQTFCEEEGIIRHLTAPYTPQQNGVVERRNRTLLGMTRSIM 568

Query: 1304 KARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATGT 1125
            K   VPNY+W E +RHAT+LINRV TRAL+NQTPYEA K KKPN+E LRVFGCV+YA   
Sbjct: 569  KHMSVPNYLWGEAIRHATYLINRVGTRALINQTPYEALKKKKPNVEHLRVFGCVSYAKVE 628

Query: 1124 RPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETHE 945
             P+L KLD+RS  L+Y+G E G+K + L +P  +KI+V RD  F+E   WK+ A SE  E
Sbjct: 629  FPHLRKLDERSRILVYLGTETGSKAYTLLDPTTRKIIVSRDVVFDENKSWKW-ANSELIE 687

Query: 944  L--NPGMFII---EWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNTEQEVQ 780
            +   PGMF +   E+H +             +EVE E  E    ++ +++   + E  + 
Sbjct: 688  IQKEPGMFTLAQTEFHNN-------------EEVENETSEEIEENEAEDSTNKDAEDGLD 734

Query: 779  FEAGNDPNPVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQNLLLIEDDEPRT 600
              +  +PN  ++  P+  RS R   KP   ND+++ +        E + LLL+ +DEP  
Sbjct: 735  EPSVPEPNH-SDDVPVFTRSGRQVIKPAHLNDYVLLAEI------EGERLLLLINDEPWD 787

Query: 599  FQEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSINKFKA 420
            F+EA    +W  A  +EI+SI KN +W LV  PV + PIGLKWVFKIKRN DG+I K KA
Sbjct: 788  FKEANKYREWRDACDEEIKSIIKNRTWSLVSLPVGIKPIGLKWVFKIKRNSDGNITKHKA 847

Query: 419  RLVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGELKEQV 240
            RLVAKGY QK  +D+DEVFAPVARIETVR +I+LAA   WE+HHLDVK+AFLHGELKE V
Sbjct: 848  RLVAKGYVQKHVVDFDEVFAPVARIETVRFIIALAASNGWEVHHLDVKTAFLHGELKENV 907

Query: 239  FVTQPEGFVKKGEERKIYKLKKALY 165
            +VTQPEGFV KG E K+YKL KALY
Sbjct: 908  YVTQPEGFVTKGSEEKVYKLHKALY 932


>gb|OTG20763.1| putative ribonuclease H-like domain, Reverse transcriptase,
            RNA-dependent DNA polymerase [Helianthus annuus]
          Length = 920

 Score =  548 bits (1413), Expect = 0.0
 Identities = 281/574 (48%), Positives = 379/574 (66%), Gaps = 19/574 (3%)
 Frame = -1

Query: 1667 PLQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKK 1488
            PL L++ DLCGPI+PP+ A  +YIF+L+DD +R+MW + L  K +AFE FK+FK  VEK+
Sbjct: 44   PLDLVYGDLCGPITPPTHAGKKYIFLLVDDCTRYMWAYLLTSKDQAFETFKEFKEKVEKE 103

Query: 1487 SGKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSI 1308
            +  K+  LRTDRGGEFTS EF  +C+  GI R LTAPY+PQQNGVVERRNRT++  TRS+
Sbjct: 104  AQTKLKMLRTDRGGEFTSAEFNKYCKTNGIARQLTAPYSPQQNGVVERRNRTMLSTTRSM 163

Query: 1307 LKARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATG 1128
            LKA ++P   W E VRHA +++NRV T+ALVN+TP+EA KG+KPNLE L+VFGC AYA  
Sbjct: 164  LKAMNMPQNFWGEAVRHAIYVLNRVPTKALVNKTPFEALKGRKPNLEHLKVFGCTAYAKV 223

Query: 1127 TRPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETH 948
                  KLDDRS  ++Y+G E G+K +RL++P   KI V RD +F E   W + +  ET 
Sbjct: 224  LPLQQKKLDDRSAPMVYLGIEEGSKAYRLYDPAKNKICVSRDVKFMEGQPWNWDSYMETV 283

Query: 947  EL-NPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNTEQEVQFEA 771
            +  NP     EW     T        +  E+E  +  +      D + P + +  V    
Sbjct: 284  DSGNP-----EW-----TNFVIHEDDLPPELEENEPSSPGSSGPDSSGPQHDDSGVDQTE 333

Query: 770  GND----PNPVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANE------------- 642
              D    P   +  Q     SS +       ++   G+ S T V                
Sbjct: 334  EQDSYVTPPAYSYNQNSAGNSSNLQNGGPSTSESTTGNISNTPVRLRSLEELYDETEEIQ 393

Query: 641  -DQNLLLIEDDEPRTFQEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVF 465
             D + LL+ ++EPR ++EA    KW+ AMK E++SI KN++W L E P +   IGLKWVF
Sbjct: 394  LDPHELLLAEEEPRNYKEASSDRKWIEAMKAELDSINKNNTWSLTELPRDHKAIGLKWVF 453

Query: 464  KIKRNPDGSINKFKARLVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHL 285
            K K++ +G+I + KARLVAKGY Q+ GID+DEVFAP+AR+ETVRL+++LAA + WE+HHL
Sbjct: 454  KTKKDANGNIVRHKARLVAKGYVQQHGIDFDEVFAPIARMETVRLMLALAAYQGWEVHHL 513

Query: 284  DVKSAFLHGELKEQVFVTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQM 105
            DVKSAFLHG+LKE+V+V+QPEGF+K G+E K+Y+L KALYGL+QAPRAWNTKLD+ LK +
Sbjct: 514  DVKSAFLHGDLKEEVYVSQPEGFIKPGDEGKVYRLSKALYGLRQAPRAWNTKLDQTLKSL 573

Query: 104  SFKRCQHEQAVYVKKTNKSILIISVYVDDLLVTG 3
            +FK+C  E A+Y + +  S LI+ VYVDDL+VTG
Sbjct: 574  NFKKCTLESAIYTRTSEASTLIVGVYVDDLIVTG 607


>gb|AAO72413.1| gag-pol polyprotein [Oryza sativa Japonica Group]
 gb|ABF98178.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1339

 Score =  538 bits (1387), Expect = e-174
 Identities = 275/581 (47%), Positives = 376/581 (64%), Gaps = 26/581 (4%)
 Frame = -1

Query: 1667 PLQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKK 1488
            PL+L+H DLCGPI+P +   NRY  +++DDFS +MW F +K K +A   F+KFK L E  
Sbjct: 506  PLELLHMDLCGPITPSTFTGNRYFMLIVDDFSHWMWVFVIKSKDQALAAFEKFKPLAENT 565

Query: 1487 SGKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSI 1308
            +G+ I TLRTDRGGEF S EF   C+  GI RHLT PY+PQQNGVVERRNRT+M M RS+
Sbjct: 566  AGRTIKTLRTDRGGEFLSGEFARVCDAAGIERHLTVPYSPQQNGVVERRNRTVMAMARSL 625

Query: 1307 LKARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATG 1128
            LK   VP  MW E VRHA FL+NR+ T+A+ N+TP+EA+ GKKP+L  LRVFGC A+A  
Sbjct: 626  LKGMSVPGRMWGEAVRHAVFLLNRLPTKAMGNRTPFEAWTGKKPHLGHLRVFGCTAHAKV 685

Query: 1127 TRPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETH 948
            T P+L KLDDRS  ++Y+G E G+K  RLF+P+ ++I+V RD  F+E   W++ A +   
Sbjct: 686  TAPHLKKLDDRSNPVVYLGVEEGSKAHRLFDPRRRQIIVSRDVVFDENTPWQWSAAA--- 742

Query: 947  ELNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAEN---HHDVDENQPVNTEQEVQF 777
                        G + +    V   V  E  A  ++A +   +      +    E EV  
Sbjct: 743  ------------GEVTSTEFEVEEPVGAEQPAPAEQAGSVPWYRAPPAGRRAGKEPEVAE 790

Query: 776  EAGNDP------NPVTETQPIMRRSSRVST-------------KPTRFNDF--IMGSSSR 660
            + G  P      +P   + P +  SS  S              +P R+     IM  + R
Sbjct: 791  QRGTPPASPARFSPTLPSTPTLGSSSTHSAEVQASPRTAGSDDEPVRYRSLAEIMIEAPR 850

Query: 659  TSVANEDQN--LLLIEDDEPRTFQEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNP 486
              +  +D +   LL+E +EP +++EA     W+ AM +E+E+IEKN +W L   P +   
Sbjct: 851  VDLVEDDDDTEALLVEMEEPTSYREAAGEPAWVNAMNKELEAIEKNKTWSLCMLPASHKA 910

Query: 485  IGLKWVFKIKRNPDGSINKFKARLVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKE 306
            IGLKWVFK+K+N  G + K KARLVAKGY Q++G+D+DEVFAPVAR++TVR ++ +A   
Sbjct: 911  IGLKWVFKLKKNTAGEVIKHKARLVAKGYVQRQGVDFDEVFAPVARLDTVRAILPVAVDR 970

Query: 305  AWELHHLDVKSAFLHGELKEQVFVTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKL 126
             W++HHLDVKSAFL+G+L+E+V+V+QPEGFV+KG+E  +YKL KALYGL+QAPRAWNT+L
Sbjct: 971  RWQVHHLDVKSAFLNGDLEEEVYVSQPEGFVEKGKEHLVYKLSKALYGLRQAPRAWNTRL 1030

Query: 125  DRELKQMSFKRCQHEQAVYVKKTNKSILIISVYVDDLLVTG 3
            DR +K++ F RC  EQAVY + T  + +I+ VYVDDL+VTG
Sbjct: 1031 DRSMKELGFSRCAQEQAVYTRGTGSTGIIVGVYVDDLIVTG 1071


>dbj|BAG94704.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1094

 Score =  492 bits (1267), Expect = e-159
 Identities = 262/555 (47%), Positives = 352/555 (63%), Gaps = 1/555 (0%)
 Frame = -1

Query: 1664 LQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKKS 1485
            L+L+H DLCGPI+P +    +Y  +L+DD SRFMW   L  K EA    K+FKA VE +S
Sbjct: 239  LELVHGDLCGPIAPATPGGRKYFLLLVDDMSRFMWIRLLSGKHEAAAAIKQFKAGVEMES 298

Query: 1484 GKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSIL 1305
            G+K+  LRTDRGGEFTS EFT FC + G++R LTAPY+PQQNGVVERRN T++   RS+L
Sbjct: 299  GRKLRALRTDRGGEFTSVEFTEFCADRGVSRQLTAPYSPQQNGVVERRNLTVVAAARSML 358

Query: 1304 KARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATGT 1125
            KA  +P   W E V  A +L NR  T++L   TPYEA+ G++P++E L+VFGCV Y    
Sbjct: 359  KAAGMPAQFWGEAVMAAVYLWNRSPTKSLDGVTPYEAWHGRRPSVEHLKVFGCVGYVKTV 418

Query: 1124 RPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETHE 945
            +P L KLDDR TR+++IG E G+K +R+++P  +++ V RD  F+E   W +     T  
Sbjct: 419  KPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVSRRVYVSRDVVFDEAAMWPWRDPEVTQT 478

Query: 944  LNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNTEQEVQFEAGN 765
                 F +E+  +   G    +  V      E + A +     +  PV +       AG 
Sbjct: 479  GGEEDFTVEFFSTPLGGNRVPDVVVEHGGARETETAPSPLATPDAAPVWSPVTSSSPAG- 537

Query: 764  DPNPVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQN-LLLIEDDEPRTFQEA 588
                V    P    S      P RF       ++ T V + D N   LI + EP +F+EA
Sbjct: 538  ----VEFCTPPSDASIESDGAPPRFRTVNNVLATTTPVLDFDYNDECLIAEQEPFSFKEA 593

Query: 587  KVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSINKFKARLVA 408
            +    WM AM++E+ SIE N++W L + P +   IGLKWV+KIKR+ +G I K+KARLVA
Sbjct: 594  EKEQCWMKAMEEEMSSIEGNNTWFLCDLPSDHRAIGLKWVYKIKRSAEGEILKYKARLVA 653

Query: 407  KGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGELKEQVFVTQ 228
            KGY Q++GIDY+EVFAPVAR+ETVRLL++LAA E W++HH+DVKSAFL+GEL+E V+V Q
Sbjct: 654  KGYVQQQGIDYEEVFAPVARMETVRLLVALAAHEGWQIHHMDVKSAFLNGELEEDVYVVQ 713

Query: 227  PEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQAVYVKKTNKS 48
            P GFV + +E K+ KLKKALYGLKQAPRAW  KLD  L  + F R   E AVY +    +
Sbjct: 714  PPGFVVEHKENKVLKLKKALYGLKQAPRAWYAKLDSTLANLDFVRSATENAVYTRGEGNA 773

Query: 47   ILIISVYVDDLLVTG 3
             L++ VYVDDL++TG
Sbjct: 774  RLVVGVYVDDLIITG 788


>gb|AAU90089.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1094

 Score =  491 bits (1263), Expect = e-158
 Identities = 261/555 (47%), Positives = 352/555 (63%), Gaps = 1/555 (0%)
 Frame = -1

Query: 1664 LQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKKS 1485
            L+L+H DLCGPI+P +    +Y  +L+DD SRFMW   L  K EA    K+FKA VE +S
Sbjct: 239  LELVHGDLCGPIAPATPGGRKYFLLLVDDMSRFMWIRLLSGKHEAAAAIKQFKAGVEMES 298

Query: 1484 GKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSIL 1305
            G+K+  LRTDRGGEFTS EFT FC + G++R LTAPY+PQQNGVVERRN T++   RS+L
Sbjct: 299  GRKLRALRTDRGGEFTSVEFTEFCADRGVSRQLTAPYSPQQNGVVERRNLTVVAAARSML 358

Query: 1304 KARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATGT 1125
            KA  +P   W E V  A +L+NR  T++L   TPYEA+ G++P++E L+VFGCV Y    
Sbjct: 359  KAAGMPAQFWGEAVVAAVYLLNRSPTKSLDGVTPYEAWHGRRPSVEHLKVFGCVGYVKTV 418

Query: 1124 RPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETHE 945
            +P L KLDDR TR+++IG E G+K +R+++P  ++  V RD  F+E   W +     T  
Sbjct: 419  KPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVSRRFYVSRDVVFDEAAMWPWRDPEVTQT 478

Query: 944  LNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNTEQEVQFEAGN 765
                 F +E+  +   G    +  V      E + A +     +  PV +       AG 
Sbjct: 479  GGEEDFTVEFFSTPLGGNRVPDVVVEHGGARETETAPSPLATPDAAPVWSPVTSSSPAG- 537

Query: 764  DPNPVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANED-QNLLLIEDDEPRTFQEA 588
                V    P    S      P RF       ++ T V + D  +  LI + EP +F+EA
Sbjct: 538  ----VEFCTPPSDASIESDGAPPRFRTVNNVLATTTPVLDFDYDDECLIAEQEPFSFKEA 593

Query: 587  KVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSINKFKARLVA 408
            +    WM AM++E+ SIE N++W L + P +   IGLKWV+KIKR+ +G I K+KARLVA
Sbjct: 594  EKEQCWMKAMEEEMSSIEGNNTWFLCDLPSDHRAIGLKWVYKIKRSAEGEILKYKARLVA 653

Query: 407  KGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGELKEQVFVTQ 228
            KGY Q++GIDY+EVFAPVAR+ETVRLL++LAA E W++HH+DVKSAFL+GEL+E V+V Q
Sbjct: 654  KGYVQQQGIDYEEVFAPVARMETVRLLVALAAHEGWQIHHMDVKSAFLNGELEEDVYVVQ 713

Query: 227  PEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQAVYVKKTNKS 48
            P GFV + +E K+ KLKKALYGLKQAPRAW  KLD  L  + F R   E AVY +    +
Sbjct: 714  PPGFVVEHKENKVLKLKKALYGLKQAPRAWYAKLDSTLANLDFVRSATENAVYTRGEGNA 773

Query: 47   ILIISVYVDDLLVTG 3
             L++ VYVDDL++TG
Sbjct: 774  RLVVGVYVDDLIITG 788


>gb|PNX93789.1| copia-type polyprotein [Trifolium pratense]
          Length = 1347

 Score =  496 bits (1277), Expect = e-158
 Identities = 253/560 (45%), Positives = 363/560 (64%), Gaps = 3/560 (0%)
 Frame = -1

Query: 1673 THPLQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVE 1494
            ++ LQL+HAD+CGPI P S +  RY    IDDF+R  W + L EK EAF  FK FKA VE
Sbjct: 490  SNKLQLVHADICGPIKPESNSNKRYFLSFIDDFTRKTWIYFLHEKSEAFAMFKNFKAYVE 549

Query: 1493 KKSGKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTR 1314
            K+SG  I +LRTDRGGEF S EF  FC+ +GI+R LTA YTPQQNGV ER+NRT+M M R
Sbjct: 550  KESGAYITSLRTDRGGEFNSNEFEEFCKVQGISRQLTAAYTPQQNGVAERKNRTIMNMVR 609

Query: 1313 SILKARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYA 1134
            S+L  + VP   W E V+ +  ++NR  T A+ N+TP EA+ G KP +   RVFGCVA+A
Sbjct: 610  SMLVEKKVPKMFWPEAVKWSVHILNRCPTLAVQNKTPEEAWSGIKPTINYFRVFGCVAHA 669

Query: 1133 TGTRPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSE 954
                    KLDD+S + + +G    +K ++L++P  KKI++ +D  F E++ W +    +
Sbjct: 670  HIPDQKRSKLDDKSKKCVLLGVSDESKAYKLYDPVSKKIIISKDVIFEEDVCWNWDNNKD 729

Query: 953  THELNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNTEQEVQFE 774
               ++    ++EW    +        G  +EV     E E+++  +     +T   ++  
Sbjct: 730  ERRVD----VLEWKNDYENDIEEAIEG-NEEVGNNGNEEEHNNGNEGGNNDDTTNSIESN 784

Query: 773  AGNDPNPVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQ--NLLLIEDDEPRT 600
            + +  +   E+  ++    RV   P+   D+  G      +++ED    ++++ +D+P +
Sbjct: 785  SSSSESHEDESPNMVE--GRVRRPPSYLADYETGEG----LSDEDNLNAMMMLTEDDPLS 838

Query: 599  FQEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSINKFKA 420
            F+EA+ S+KW  AMK EIESIEKN +WEL   P  + PIG+KW++K K N +G I+K+KA
Sbjct: 839  FEEARKSNKWRDAMKAEIESIEKNKTWELTILPNGIKPIGVKWIYKTKLNENGQIDKYKA 898

Query: 419  RLVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGELKEQV 240
            RLVAKGYAQ+ G+DY EVFAPVAR++T+RL+++LAA+ +W++  LDVKSAFLHGEL E+V
Sbjct: 899  RLVAKGYAQQYGVDYTEVFAPVARLDTIRLILALAAQHSWDVFQLDVKSAFLHGELNEEV 958

Query: 239  FVTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQAVYVK- 63
            FV QP G+ KKGEE K+YKLKKALYGLKQAPRAW +K++    +  F++C  E  ++ K 
Sbjct: 959  FVKQPLGYEKKGEEDKVYKLKKALYGLKQAPRAWYSKIEAYFVREGFEKCFCEHTLFTKT 1018

Query: 62   KTNKSILIISVYVDDLLVTG 3
            K    +LI+S+YVDDL+ TG
Sbjct: 1019 KEGSKLLIVSLYVDDLIYTG 1038


>dbj|BAF21751.1| Os07g0528100, partial [Oryza sativa Japonica Group]
          Length = 1187

 Score =  492 bits (1267), Expect = e-158
 Identities = 262/555 (47%), Positives = 352/555 (63%), Gaps = 1/555 (0%)
 Frame = -1

Query: 1664 LQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKKS 1485
            L+L+H DLCGPI+P +    +Y  +L+DD SRFMW   L  K EA    K+FKA VE +S
Sbjct: 332  LELVHGDLCGPIAPATPGGRKYFLLLVDDMSRFMWIRLLSGKHEAAAAIKQFKAGVEMES 391

Query: 1484 GKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSIL 1305
            G+K+  LRTDRGGEFTS EFT FC + G++R LTAPY+PQQNGVVERRN T++   RS+L
Sbjct: 392  GRKLRALRTDRGGEFTSVEFTEFCADRGVSRQLTAPYSPQQNGVVERRNLTVVAAARSML 451

Query: 1304 KARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATGT 1125
            KA  +P   W E V  A +L NR  T++L   TPYEA+ G++P++E L+VFGCV Y    
Sbjct: 452  KAAGMPAQFWGEAVMAAVYLWNRSPTKSLDGVTPYEAWHGRRPSVEHLKVFGCVGYVKTV 511

Query: 1124 RPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETHE 945
            +P L KLDDR TR+++IG E G+K +R+++P  +++ V RD  F+E   W +     T  
Sbjct: 512  KPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVSRRVYVSRDVVFDEAAMWPWRDPEVTQT 571

Query: 944  LNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNTEQEVQFEAGN 765
                 F +E+  +   G    +  V      E + A +     +  PV +       AG 
Sbjct: 572  GGEEDFTVEFFSTPLGGNRVPDVVVEHGGARETETAPSPLATPDAAPVWSPVTSSSPAG- 630

Query: 764  DPNPVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQN-LLLIEDDEPRTFQEA 588
                V    P    S      P RF       ++ T V + D N   LI + EP +F+EA
Sbjct: 631  ----VEFCTPPSDASIESDGAPPRFRTVNNVLATTTPVLDFDYNDECLIAEQEPFSFKEA 686

Query: 587  KVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSINKFKARLVA 408
            +    WM AM++E+ SIE N++W L + P +   IGLKWV+KIKR+ +G I K+KARLVA
Sbjct: 687  EKEQCWMKAMEEEMSSIEGNNTWFLCDLPSDHRAIGLKWVYKIKRSAEGEILKYKARLVA 746

Query: 407  KGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGELKEQVFVTQ 228
            KGY Q++GIDY+EVFAPVAR+ETVRLL++LAA E W++HH+DVKSAFL+GEL+E V+V Q
Sbjct: 747  KGYVQQQGIDYEEVFAPVARMETVRLLVALAAHEGWQIHHMDVKSAFLNGELEEDVYVVQ 806

Query: 227  PEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQAVYVKKTNKS 48
            P GFV + +E K+ KLKKALYGLKQAPRAW  KLD  L  + F R   E AVY +    +
Sbjct: 807  PPGFVVEHKENKVLKLKKALYGLKQAPRAWYAKLDSTLANLDFVRSATENAVYTRGEGNA 866

Query: 47   ILIISVYVDDLLVTG 3
             L++ VYVDDL++TG
Sbjct: 867  RLVVGVYVDDLIITG 881


>gb|PRQ42077.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1044

 Score =  488 bits (1255), Expect = e-158
 Identities = 256/559 (45%), Positives = 351/559 (62%), Gaps = 2/559 (0%)
 Frame = -1

Query: 1673 THPLQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVE 1494
            +H LQLIH+D+CGPI P S +R RY+   IDD+SR  W + L EK +AF  FK FK LVE
Sbjct: 208  SHRLQLIHSDICGPIKPLSNSRKRYLISFIDDYSRKTWVYFLYEKSQAFTTFKSFKCLVE 267

Query: 1493 KKSGKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTR 1314
            K++G  I  LRTDRGGEFTS+EF  FC   GI+R LTA YTPQQNGV ER+NRT+M M R
Sbjct: 268  KETGDYIQCLRTDRGGEFTSQEFNTFCSTHGISRQLTAAYTPQQNGVAERKNRTIMNMVR 327

Query: 1313 SILKARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYA 1134
            S+L  + VP   W E V  +  ++NR  T A+ + TP EA+ G KP +   RVFGC+A+ 
Sbjct: 328  SMLSEKQVPKVFWPEAVNWSIHILNRSPTLAVKDMTPEEAWSGIKPAVHYFRVFGCIAHV 387

Query: 1133 TGTRPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSE 954
                    KLDD+S + + +G    +K +RL++P  ++IVV RD  F E+  W +   +E
Sbjct: 388  HIPEAKRKKLDDKSYKCVLLGVSKESKAYRLYDPISERIVVSRDVVFEEDENWDWGRTAE 447

Query: 953  THELNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNTEQEVQFE 774
               L+    +++W                   + E++E E+    +EN+   +E+E    
Sbjct: 448  EVRLD----VLDWS------------------DGEEEENESAQSEEENEFAQSEEE---- 481

Query: 773  AGNDPNPVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQNLLLIE-DDEPRTF 597
              N  N   E + I+    R   +P    D++ G     S   E  N+++     +P TF
Sbjct: 482  --NVNNDDAEEEEIL-EEGRTRMQPVWMQDYVSGEG--LSEEEETNNIVMFTYVTDPTTF 536

Query: 596  QEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSINKFKAR 417
            +EA  S+KW  AM QEIE+IE+N +WEL   P     IG+KW+FK K N +G + K KAR
Sbjct: 537  EEAFKSAKWKAAMDQEIEAIERNHTWELTILPAGAKTIGVKWIFKTKLNENGEVEKCKAR 596

Query: 416  LVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGELKEQVF 237
            LVAKGYAQ+ GIDY EVFAPVAR +T+R++I+LAAK+ W+++ LDVKSAFLHGEL E VF
Sbjct: 597  LVAKGYAQQYGIDYTEVFAPVARWDTIRMVIALAAKKGWKVYQLDVKSAFLHGELTEAVF 656

Query: 236  VTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQAVYVK-K 60
            + QP+G+VK+G+E K+YKL KALYGLKQAPRAW ++++    +  F+RC HE  ++VK  
Sbjct: 657  IDQPQGYVKEGDELKVYKLNKALYGLKQAPRAWYSRIEAYFIKEGFERCPHEHTLFVKLS 716

Query: 59   TNKSILIISVYVDDLLVTG 3
                ILI+S+YVDDL+ TG
Sbjct: 717  EGGKILIVSLYVDDLIFTG 735


>dbj|GAU26746.1| hypothetical protein TSUD_317440 [Trifolium subterraneum]
          Length = 1608

 Score =  498 bits (1281), Expect = e-157
 Identities = 261/558 (46%), Positives = 360/558 (64%), Gaps = 4/558 (0%)
 Frame = -1

Query: 1664 LQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKKS 1485
            LQL+HAD+CGPI+P S +  RYI   IDDF+R  W + L EK EAF  FK FKA VEK+ 
Sbjct: 495  LQLVHADICGPITPSSNSNKRYILSFIDDFTRKAWIYFLHEKSEAFGRFKNFKACVEKEV 554

Query: 1484 GKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSIL 1305
            G  I  LRTDRGGEF S EF  FC+++GI R LTA YTPQQNGV ER+NRT+M   R++L
Sbjct: 555  GAFITCLRTDRGGEFISNEFEEFCKDQGICRQLTASYTPQQNGVAERKNRTIMNAVRAVL 614

Query: 1304 KARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATGT 1125
              R VP   W E V+    + NR  T A+ + TP EA+ G +P+++  R+FGCVA+A   
Sbjct: 615  NERQVPRVFWPEAVKWCVHVQNRSPTSAVDHITPEEAWTGVRPSVDYFRIFGCVAHAHVP 674

Query: 1124 RPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETHE 945
                 KLDD+S R +++G    +K ++LF+P  KK++V RD  F E+  W +    E  +
Sbjct: 675  DQKRSKLDDKSKRCVFLGVSDESKAYKLFDPIEKKVIVNRDVVFEEDKSWDWGRTEEECK 734

Query: 944  LNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNTEQEVQFEAGN 765
            ++    +++W  + + G         D   A+++E EN  D+++    ++  +      N
Sbjct: 735  VD----VLDWEENEEDG--------EDHGTAQNEE-ENSGDINQGASPSSLNKTGSPT-N 780

Query: 764  DPNPVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQNLLLI----EDDEPRTF 597
            + N V   Q  + R++R   +P    DF           +E+++L+++       +P  F
Sbjct: 781  ETNDVE--QEFLERAARSRRRPGWLVDF-----EEDPNLSEEESLMVMMTAENGSDPYLF 833

Query: 596  QEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSINKFKAR 417
            +EA  S+KW  AM  E+++IEKN +W L +AP  V PIG+KW+FK K N  G + KFKAR
Sbjct: 834  EEAFKSAKWREAMNMEMKAIEKNKTWVLTDAPRGVKPIGVKWIFKTKLNESGKVEKFKAR 893

Query: 416  LVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGELKEQVF 237
            LVAKGYAQ+ G+DY EVFAPVAR++TVR+L++LAA+  WE+  LDVKSAFLHGELKE+VF
Sbjct: 894  LVAKGYAQQYGVDYTEVFAPVARLDTVRVLLALAAQRGWEVFQLDVKSAFLHGELKEEVF 953

Query: 236  VTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQAVYVKKT 57
            V QPEGFVKKGEE K+YKLKKALYGLKQAPRAW  K++    + +F+RC  E  ++ KK 
Sbjct: 954  VQQPEGFVKKGEENKVYKLKKALYGLKQAPRAWYNKIEAYFAKENFERCSSEHTLFTKKN 1013

Query: 56   NKSILIISVYVDDLLVTG 3
              +ILI+S+YVDDL+ TG
Sbjct: 1014 EGNILIVSLYVDDLIFTG 1031


>gb|KYP74877.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1232

 Score =  484 bits (1247), Expect = e-155
 Identities = 257/559 (45%), Positives = 342/559 (61%), Gaps = 5/559 (0%)
 Frame = -1

Query: 1664 LQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKKS 1485
            LQLIHADLCGPI P S +  +YI   IDD SR  W + L EK E F  FK FKALVEK++
Sbjct: 394  LQLIHADLCGPIQPTSNSNKKYILSFIDDLSRKTWVYFLSEKSETFSLFKGFKALVEKEA 453

Query: 1484 GKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSIL 1305
            G+ II LRTDRGGEF+SK F  FC ++GI R LTA YTPQQNGV ER+NRT+M M RS+L
Sbjct: 454  GESIICLRTDRGGEFSSKAFEEFCRSQGIKRQLTAAYTPQQNGVAERKNRTIMNMVRSML 513

Query: 1304 KARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATGT 1125
              R VP   W E  +    ++NR  T  + +QTP EA+ G KP++   RVFGC+A+    
Sbjct: 514  IGRQVPKIFWPEATKWCVHILNRSPTAVVQDQTPEEAWSGVKPSVGYFRVFGCLAHVHTL 573

Query: 1124 RPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETHE 945
                 KLDD+S + +  G    +K +RLF+P  KKI++ +D  F E   W +      ++
Sbjct: 574  DQQRIKLDDKSKQCVLFGVSDESKAYRLFDPVNKKIIISKDVIFEEHKSWNWEQNKAENQ 633

Query: 944  LNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNTEQEVQFEAGN 765
            L     I+EW           + G + E++ ED+         E+Q           AG 
Sbjct: 634  LE----IVEWE---------EHEGNSTEIQFEDKSNNEEQQGTESQ----------SAGT 670

Query: 764  DPNPVTETQ----PIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQNLLLIEDDEPRTF 597
            +    + TQ    P   R+ R   +P    D+  G     S  N    +L+ E D P T 
Sbjct: 671  NVRNKSHTQILEIPTKGRARRHRREPVWMTDYEKGEG--LSYINNTSAMLVTETD-PVTV 727

Query: 596  QEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSINKFKAR 417
            +EA  S KW  AM +E+E+IE+N +WEL + P  V PIG+KWVFK K   +G I+KFKAR
Sbjct: 728  EEAVKSKKWRDAMVKEMEAIERNQTWELTDVPKGVKPIGVKWVFKTKHKENGEIDKFKAR 787

Query: 416  LVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGELKEQVF 237
            LVAKGYAQ  G+DY EVFAPVA+++T+R+++S+AA+  W +  LDVKSAFLHGELKE+++
Sbjct: 788  LVAKGYAQHYGVDYTEVFAPVAKVDTIRIILSMAAQNGWIIFQLDVKSAFLHGELKEEIY 847

Query: 236  VTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQAVYVKKT 57
            V QP  F+KKG+E K+YKL+KALYGLKQAPRAW  +++    Q  F+RC  E  ++ K  
Sbjct: 848  VQQPAEFIKKGKEEKVYKLRKALYGLKQAPRAWYNRIEAYFLQNGFERCFCEHTLFTKSA 907

Query: 56   -NKSILIISVYVDDLLVTG 3
                ILI+S+YVDDL+ TG
Sbjct: 908  EGGKILIVSLYVDDLIYTG 926


>gb|PNX77239.1| copia-type polyprotein, partial [Trifolium pratense]
          Length = 803

 Score =  472 bits (1215), Expect = e-155
 Identities = 253/561 (45%), Positives = 348/561 (62%), Gaps = 7/561 (1%)
 Frame = -1

Query: 1664 LQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKKS 1485
            L+LIH+D+CGPI+P S   NRY     DDFSR  WT+ ++EK  A   FKKFK+LVE +S
Sbjct: 247  LELIHSDICGPITPKSNGGNRYFLTFTDDFSRKTWTYIIQEKSCALSVFKKFKSLVENES 306

Query: 1484 GKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSIL 1305
               I  LRTDRGGEFTS EF NFC ++GI R LTA YTPQQNGV ER+NRT++ M RS++
Sbjct: 307  NCLIKCLRTDRGGEFTSLEFNNFCSSQGIKRQLTAAYTPQQNGVAERKNRTILNMVRSMI 366

Query: 1304 KARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATGT 1125
              R VP   W E V+ AT+++NR  T A+ + TP EA+ G KP++   R+FGC+A+    
Sbjct: 367  SCRGVPKCFWPEAVKWATYVMNRSPTFAVKDITPEEAYSGVKPSVHHFRIFGCLAHVHIP 426

Query: 1124 RPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETHE 945
              +  KLD +ST+ I++G    +K ++L++P  +KI++ RD  F E  GW +   S +  
Sbjct: 427  DAHRKKLDGKSTKCIHLGVSEESKAYKLYDPTARKIIISRDVIFEENKGWNWNKASTS-- 484

Query: 944  LNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEA---ENHHDVDENQPVNTEQEVQFE 774
             N G  + +    I             EVE  D +A   EN+ D  EN+          E
Sbjct: 485  -NSGEQLSDNEAGI-------------EVENNDTDALNNENNGDTIENEN---------E 521

Query: 773  AGNDPNPVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQNLLLI---EDDEPR 603
            AG+    + +++     S R    P    D++ G+       ++ QNL +      D+P 
Sbjct: 522  AGSSDMDLEDSEEEQAISPRPRRPPGYLRDYVTGNELPDD-DDQLQNLAIAMFGTSDDPA 580

Query: 602  TFQEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSINKFK 423
            T++EA  S  W  AM+ EI+SIE N +WEL + P     IG+KW++K K N  G + K K
Sbjct: 581  TYEEAVKSKVWRDAMEAEIKSIESNGTWELTKLPKEAKAIGVKWIYKTKLNEKGKVEKHK 640

Query: 422  ARLVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGELKEQ 243
            ARLVAKGY+QK GIDY EVFAPVAR +T+R ++SLAA E W ++ LDVKSAFLHG+L E 
Sbjct: 641  ARLVAKGYSQKHGIDYGEVFAPVARWDTIRTILSLAAFERWPVYQLDVKSAFLHGDLMED 700

Query: 242  VFVTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQAVYVK 63
            V+V QP G+ +KG +  +YKLKKALYGLKQAPRAW +K++       F++C HE  ++VK
Sbjct: 701  VYVMQPLGYEQKGSD-LVYKLKKALYGLKQAPRAWYSKIESYFVSEQFEKCSHEHTLFVK 759

Query: 62   -KTNKSILIISVYVDDLLVTG 3
              +NK +LI+S+YVDDL+ TG
Sbjct: 760  YSSNKKVLIVSIYVDDLIYTG 780


>gb|KOM33859.1| hypothetical protein LR48_Vigan02g000900 [Vigna angularis]
          Length = 1349

 Score =  486 bits (1252), Expect = e-154
 Identities = 252/562 (44%), Positives = 348/562 (61%), Gaps = 8/562 (1%)
 Frame = -1

Query: 1664 LQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKKS 1485
            LQLIHAD+CGPI+P S +  RYI   IDDFSR  W + L+EK EA   FK+FKA VEK++
Sbjct: 499  LQLIHADICGPITPSSNSNKRYILTFIDDFSRKTWIYFLQEKSEALTMFKRFKASVEKEA 558

Query: 1484 GKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSIL 1305
               I  LRTDRGGEFTS EF  FC+ +GI+R LTA YTPQQNGV ER+N+T+M   R+ L
Sbjct: 559  DMCITCLRTDRGGEFTSMEFEEFCKTQGISRQLTAAYTPQQNGVAERKNKTIMNAVRATL 618

Query: 1304 KARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATGT 1125
              + VP   W E  R    + NR  T A+  +TP E + GKKP ++  RVFGCVA+A   
Sbjct: 619  NGKQVPKAFWPEAARWCVHVQNRSPTSAVEQKTPEEVWCGKKPRVDYFRVFGCVAHAHIP 678

Query: 1124 RPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETHE 945
                 KLDD+S R +++G    +K ++LF+P  KK+++ RD  F E+  W +    ET  
Sbjct: 679  NQKRSKLDDKSKRCVFLGVSDESKAYKLFDPLTKKVIISRDVIFEEDKSWDWEGPKETSS 738

Query: 944  LNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHD-------VDENQPVNTEQE 786
             +    +++W   +             E   ED  +            V  + P +   E
Sbjct: 739  TD----VLDWDEQMF------------EARKEDSRSAQQEGNGSITIAVSSSDPNDNSNE 782

Query: 785  VQFEAGNDPNPVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQNLLLIEDD-E 609
                 G D +       +  R++R   +P    D+   S     +A     L+L E   +
Sbjct: 783  TILPLGEDVDE--RATQVQGRATRQRREPVWMADYTHFSEEADLMA-----LMLAEHGGD 835

Query: 608  PRTFQEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSINK 429
            P +++EA  S KW  AM  EI++IEKN +WEL +AP  + PIG+KWVFK K N  G+I K
Sbjct: 836  PHSYKEASQSIKWREAMNAEIQAIEKNKTWELTDAPTGITPIGVKWVFKTKLNEHGNIEK 895

Query: 428  FKARLVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGELK 249
             KARLVAKGY+Q+ G+DY EVFAPVAR++TVR+L+++AA+  WE+  LDVKSAFLHGELK
Sbjct: 896  HKARLVAKGYSQQYGVDYTEVFAPVARLDTVRVLLAIAAQHKWEVFQLDVKSAFLHGELK 955

Query: 248  EQVFVTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQAVY 69
            E+V++ QPEGFVK+G+E K+Y+L+KALYGLKQAPRAW ++++    +  F++C  E  ++
Sbjct: 956  EEVYIQQPEGFVKEGKEDKVYRLRKALYGLKQAPRAWYSRIEAYFVKEQFEKCPSEHTLF 1015

Query: 68   VKKTNKSILIISVYVDDLLVTG 3
             KK+  +ILI+S+YVDDL+ TG
Sbjct: 1016 TKKSGDNILIVSLYVDDLIYTG 1037


>gb|AAF25964.2|AC017118_1 F6N18.1 [Arabidopsis thaliana]
          Length = 1207

 Score =  483 bits (1242), Expect = e-154
 Identities = 248/559 (44%), Positives = 349/559 (62%), Gaps = 2/559 (0%)
 Frame = -1

Query: 1673 THPLQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVE 1494
            T  LQL+H D+CGPI+P S +  RYI   IDDFSR  WT+ L EK E F++FK+FKA VE
Sbjct: 398  TQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVE 457

Query: 1493 KKSGKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTR 1314
            ++SGKK++ LR+DRGGE+ S+EF  +C+  GI R LTA YTPQQNGV ER+NR++M MTR
Sbjct: 458  RESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTR 517

Query: 1313 SILKARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYA 1134
             +L    VP   W E V++A +++NR  ++AL + TP E +   KP++E LR+FG +AYA
Sbjct: 518  CMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLAYA 577

Query: 1133 TGTRPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSE 954
                    KLD++S + +  G    +K +RL++P   KI++ RD +F+EE GW++   S 
Sbjct: 578  LVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGKILISRDVQFDEERGWEWEDKSL 637

Query: 953  THELNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNTEQEVQFE 774
              EL        W  S     G   P +            NH+   + +    E+E   E
Sbjct: 638  EEEL-------VWDNSDHEPAGEEGPEI------------NHNGQQDQEETEEEEETVAE 678

Query: 773  AGNDPNPVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQNL--LLIEDDEPRT 600
              +   P   T  + +R      +P    D+++G++      +E+  +  L I  D+P  
Sbjct: 679  TVHQNLPAVGTGGVRQRQ-----QPVWMKDYVVGNARVLITQDEEDEVLALFIGPDDPVC 733

Query: 599  FQEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSINKFKA 420
            F+EA     W  AM+ EI SIE+N++WELVE P     IGLKW+FK K N  G ++KFKA
Sbjct: 734  FEEAAQLEVWRKAMEAEITSIEENNTWELVELPEEAKVIGLKWIFKTKFNEKGEVDKFKA 793

Query: 419  RLVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGELKEQV 240
            RLVAKGY Q+ G+D+ EVFAPVA+ +T+RL++ LAA++ W +  LDVKSAFLHG+LKE V
Sbjct: 794  RLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSVFQLDVKSAFLHGDLKEDV 853

Query: 239  FVTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQAVYVKK 60
            FV QP+GF  + E  K+YKLKKALYGLKQAPRAW ++++    +  F++C  E  ++VKK
Sbjct: 854  FVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFFGKEGFEKCYCEHTLFVKK 913

Query: 59   TNKSILIISVYVDDLLVTG 3
                 L++SVYVDDL+ TG
Sbjct: 914  ERSDFLVVSVYVDDLIYTG 932


>gb|KYP37051.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1079

 Score =  478 bits (1230), Expect = e-154
 Identities = 254/565 (44%), Positives = 353/565 (62%), Gaps = 11/565 (1%)
 Frame = -1

Query: 1664 LQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKKS 1485
            LQL+HA++CGPISP S +  RYI   +DD+SR  W + L EK E F  FK FKA VEK+ 
Sbjct: 472  LQLVHANVCGPISPASNSGKRYILSFVDDYSRKTWVYFLHEKSETFNTFKSFKACVEKEV 531

Query: 1484 GKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSIL 1305
            G  I+ LRTDRGGEFTSKEF+NFC ++GI+R LTA YTPQQNGV ER+NRT+M   R++L
Sbjct: 532  GTHIVCLRTDRGGEFTSKEFSNFCTHQGISRQLTAAYTPQQNGVAERKNRTIMNAVRAVL 591

Query: 1304 KARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATGT 1125
              + V    W E VR    + NR  T A+ + T  E + G KP ++  R FGCVA+    
Sbjct: 592  HEKQVSKSFWPEVVRWCVHIQNRSPTTAIDHGTLEEVWSGIKPRVDYFRTFGCVAHVHIP 651

Query: 1124 RPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETHE 945
                 KLDD+S   + +G     K ++LF+P  KK++V RD  F E+ GW +  G  T E
Sbjct: 652  DQRRSKLDDKSHTCVLLGVSDEAKAYKLFDPISKKVIVSRDVVFEEDKGWNWHKG--TTE 709

Query: 944  LNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNTEQEVQFEAGN 765
              P                         ++ E Q+ E   DVD     +T Q V     N
Sbjct: 710  STPLA-----------------------LDMEGQDEEGSDDVD-----STPQLVATRGSN 741

Query: 764  D----PNPVTETQ----PIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQNLLLI---E 618
            +    P PV+ ++    P+  R++R   +P    D+       T++  E+++LL +    
Sbjct: 742  NNSEPPEPVSNSESIVPPVEGRATRTQRQPLWMTDY------ETNLFAEEESLLAMLTTN 795

Query: 617  DDEPRTFQEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGS 438
             ++P+TF+EA  S KW  AM  E+++IE+N++W+LV+ P  V PIG+KWVFK K N  G 
Sbjct: 796  SEDPQTFEEASTSQKWKEAMDTEMKAIERNNTWDLVDPPEGVLPIGVKWVFKTKLNERGQ 855

Query: 437  INKFKARLVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHG 258
            + K+KARLVAKGYAQK GI+Y EVFA VAR++TVR+L+++AA+ AWE+  LDVKSAFLHG
Sbjct: 856  VEKYKARLVAKGYAQKFGINYTEVFALVARLDTVRVLLAVAAQNAWEVFQLDVKSAFLHG 915

Query: 257  ELKEQVFVTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQ 78
            E++E+++V QP GF+KKG+E ++YKL+KALYGLKQAPRAW ++++    +  F RC  E 
Sbjct: 916  EIQEEIYVHQPAGFIKKGKEGQVYKLRKALYGLKQAPRAWYSRIEAYFAKERFARCSSEH 975

Query: 77   AVYVKKTNKSILIISVYVDDLLVTG 3
             ++ K    +ILI+S+YVDDL+ TG
Sbjct: 976  TLFTKHIRGNILIVSLYVDDLIFTG 1000


>gb|PRQ52345.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1316

 Score =  483 bits (1243), Expect = e-153
 Identities = 257/559 (45%), Positives = 349/559 (62%), Gaps = 2/559 (0%)
 Frame = -1

Query: 1673 THPLQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVE 1494
            +H LQLIH+D+CGPI P S +R RY+   IDD+SR  W + L EK +AF  FK FK LVE
Sbjct: 489  SHRLQLIHSDICGPIKPLSNSRKRYLISFIDDYSRKTWVYFLYEKSQAFTTFKSFKCLVE 548

Query: 1493 KKSGKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTR 1314
            K++G  I  LRTDRGGEFTS+EF  FC   GI+R LTA YTPQQNGV ER+NRT+M M R
Sbjct: 549  KETGDYIQCLRTDRGGEFTSQEFNTFCSTHGISRQLTAAYTPQQNGVAERKNRTIMNMVR 608

Query: 1313 SILKARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYA 1134
            S+L  + VP   W E V  +  ++NR  T A+ + TP EA+ G KP +   RVFGC+A+ 
Sbjct: 609  SMLSEKQVPKVFWPEAVNWSIHILNRSPTLAVKDMTPEEAWSGIKPAVHYFRVFGCIAHV 668

Query: 1133 TGTRPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSE 954
                    KLDD+S + + +G    +K +RL++P  ++IVV RD  F E+  W +   +E
Sbjct: 669  HIPEAKRKKLDDKSYKCVLLGVSKESKAYRLYDPISERIVVSRDVVFEEDESWDWGRTAE 728

Query: 953  THELNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNTEQEVQFE 774
               L+    +++W           + G  +E E+   E EN ++ D       E+E   E
Sbjct: 729  EERLD----VLDW-----------SDGEEEENESAQSEEENVNNDD------AEEEEILE 767

Query: 773  AGNDPNPVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQNLLLIED-DEPRTF 597
             G      T  QPI               D++ G     S   E  N+++     +P TF
Sbjct: 768  EGR-----TRLQPIW------------MQDYVSGEG--LSEEEETNNIVMFTSVTDPTTF 808

Query: 596  QEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSINKFKAR 417
            +EA  S+KW  AM QEIE+IE+N +WEL   P     IG+KW+FK K N +G + K KAR
Sbjct: 809  EEAFKSAKWKAAMDQEIEAIERNHTWELTILPAGAKTIGVKWIFKTKLNENGEVEKCKAR 868

Query: 416  LVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGELKEQVF 237
            LVAKGYAQ+ GIDY EVFAPVAR +T+R++I+LAA++ W+++ LDVKSAFLHGEL E VF
Sbjct: 869  LVAKGYAQQYGIDYTEVFAPVARWDTIRMVIALAAQKGWKVYQLDVKSAFLHGELTEAVF 928

Query: 236  VTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQAVYVKKT 57
            + QP+G+VK+G+E K+YKL KALYGLKQAPRAW ++++    +  F+RC HE  ++VK +
Sbjct: 929  IDQPQGYVKEGDELKVYKLNKALYGLKQAPRAWYSRIEAYFIKEGFERCPHEHTLFVKSS 988

Query: 56   -NKSILIISVYVDDLLVTG 3
                ILI+S+YVDDL+ TG
Sbjct: 989  EGGKILIVSLYVDDLIFTG 1007


>gb|OTG12557.1| putative zinc finger, CCHC-type [Helianthus annuus]
          Length = 1364

 Score =  484 bits (1245), Expect = e-153
 Identities = 253/569 (44%), Positives = 350/569 (61%), Gaps = 14/569 (2%)
 Frame = -1

Query: 1673 THPLQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVE 1494
            + PLQL+H+D+CGP++ PSI   +Y    IDDFSR  W + LK K +A  YFK FK LVE
Sbjct: 496  SEPLQLVHSDICGPMNTPSIGGCKYFITFIDDFSRKTWVYFLKLKSDALHYFKIFKQLVE 555

Query: 1493 KKSGKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTR 1314
             +  +KI  +RTDRGGE+   EF NF +N GI   LT  YTPQQNGV ER+NRTLM ++R
Sbjct: 556  NQIERKIKGIRTDRGGEYCGHEFQNFLKNNGIHHQLTTSYTPQQNGVAERKNRTLMELSR 615

Query: 1313 SILKARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYA 1134
            S+LK +++PN  WAE V  AT+L+NR +T+++   TP EA+ GKKPN++ LRVFGC+AY 
Sbjct: 616  SMLKMKELPNTYWAEAVACATYLLNRATTKSVPKLTPQEAWSGKKPNVDHLRVFGCIAYV 675

Query: 1133 TGTRPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSE 954
               + +  KLDD++ R I++G    +KG++LFNP   K+++ RD  F+E   W       
Sbjct: 676  HIPKQHRSKLDDKTERAIFVGYSEHSKGYKLFNPITHKMIISRDVIFSENQHW------A 729

Query: 953  THELNPGMFIIEWHG----------SIDTGCGFVNPGVTDEVEAEDQEAE---NHHDVDE 813
            T + N G   IE             ++D       P   D V+  + E E   N ++   
Sbjct: 730  TIKENDGGLRIEIKNTSGEDDDVAVAVDDQIDLPTPNDEDNVQHTNVEVEIPGNDYESPA 789

Query: 812  NQPVNTEQEVQFEAGNDPNPVTETQPIMR-RSSRVSTKPTRFNDFIMGSSSRTSVANEDQ 636
            +       E    + +  N V  T+PI +          T+  +        TS      
Sbjct: 790  DAEETGNNEDNGTSSDSENEVIRTKPITQVYQDTTELTETQVRELYRKDQGNTSGV---V 846

Query: 635  NLLLIEDDEPRTFQEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIK 456
            N +L  D +P T+ EA   + W  AM +E+ESI KND+WELV+ P+N  PIG+KW++K K
Sbjct: 847  NFVLYTDTDPTTYVEASKETIWQDAMDREMESIIKNDTWELVDPPLNQTPIGVKWIYKTK 906

Query: 455  RNPDGSINKFKARLVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVK 276
             +  G I+K KARLV KGY QK GIDY +VFAPV R +TVRL+++LAA   W LH +DVK
Sbjct: 907  YDEHGQISKHKARLVVKGYNQKYGIDYQDVFAPVIRFDTVRLVLALAAHHGWHLHQMDVK 966

Query: 275  SAFLHGELKEQVFVTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFK 96
            +AFL+G LKEQVF+ QPEG+V KG+ERK+ KLKKALYGLKQAPRAW ++++       FK
Sbjct: 967  TAFLNGYLKEQVFIEQPEGYVIKGQERKVCKLKKALYGLKQAPRAWYSRIEGYFATHGFK 1026

Query: 95   RCQHEQAVYVKKTNKSILIISVYVDDLLV 9
            RC +E  ++ K + +  +II +YVDDL++
Sbjct: 1027 RCTYEHTLFTKMSKEEKIIICLYVDDLII 1055


>gb|AAM23251.1|AC092553_17 Putative pol polyprotein [Oryza sativa Japonica Group]
 gb|AAM47622.1|AC122147_11 Putative pol polyprotein [Oryza sativa Japonica Group]
 gb|AAP51989.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
            [Oryza sativa Japonica Group]
 dbj|BAF26012.1| Os10g0130700 [Oryza sativa Japonica Group]
          Length = 1426

 Score =  485 bits (1248), Expect = e-153
 Identities = 259/564 (45%), Positives = 356/564 (63%), Gaps = 10/564 (1%)
 Frame = -1

Query: 1664 LQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKKS 1485
            L+L+H DLCGPI+P +    +Y  +L+DD SR MW   L  K EA    K+F+  VE +S
Sbjct: 576  LELVHGDLCGPITPATPGGRKYFLLLVDDMSRHMWIRLLSGKHEAATAIKQFQVGVELES 635

Query: 1484 GKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSIL 1305
            G+K+  LRTDRGGEFTS EF ++C + G+ R LTAPY+PQQNGVVERRN+T++   RS+L
Sbjct: 636  GRKLRALRTDRGGEFTSVEFMDYCADHGMRRELTAPYSPQQNGVVERRNQTVVAAARSML 695

Query: 1304 KARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATGT 1125
            KA  +P   W E V  A +++NR  T+AL   TP+EA+ G++P++E LRVFGCV Y    
Sbjct: 696  KAAGMPACFWGEAVVAAVYVLNRSPTKALNGVTPHEAWHGRRPSVEHLRVFGCVGYVKTV 755

Query: 1124 RPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETHE 945
            +P L KLDDR TR+++IG E G+K +R+++P  +++ V RD  F+E   W +    ET  
Sbjct: 756  KPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVARRVCVSRDVVFDEAATWAW-RDPETEA 814

Query: 944  LNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNT-------EQE 786
                 F +++         FVNP   D V A+  E  +        P +T       E  
Sbjct: 815  TEEEEFTVDF---------FVNP--VDSVVADLGEQASTPVQGGTYPASTATPPSPPEVP 863

Query: 785  VQFEAGNDPN---PVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQNLLLIED 615
               E  + PN   P T   PI  R         R  D +  +         DQ LL  E 
Sbjct: 864  AGVEFCSPPNSVTPGTNEGPIRYR---------RVQDILSATEPVLDFDYSDQCLLASE- 913

Query: 614  DEPRTFQEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSI 435
             EP +  EA+    W  AM++E++SIE N +W   E PV    IGLKWV+K+K++P G +
Sbjct: 914  -EPMSLAEAEQQLCWRQAMQEELKSIEDNQTWSFAELPVGHKAIGLKWVYKVKKDPSGVV 972

Query: 434  NKFKARLVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGE 255
             K KARLVAKGY Q++GID++EVFAPVAR+ETVRLLI++AA + WE+HH+DVKSAFL+G+
Sbjct: 973  VKHKARLVAKGYVQQQGIDFEEVFAPVARMETVRLLIAVAANKGWEIHHMDVKSAFLNGD 1032

Query: 254  LKEQVFVTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQA 75
            L+E+V+V QP GF++KG+E ++ +LKKALYGLKQAPRAWN KL   L  ++F + + E A
Sbjct: 1033 LEEEVYVVQPPGFIEKGKEGQVLRLKKALYGLKQAPRAWNAKLHNTLISLNFIKSETESA 1092

Query: 74   VYVKKTNKSILIISVYVDDLLVTG 3
            VYV+ T  S LI+ VYVDDL+++G
Sbjct: 1093 VYVRGTGSSRLIVGVYVDDLIISG 1116


>emb|CAH66624.1| OSIGBa0115A19.5 [Oryza sativa]
          Length = 1426

 Score =  485 bits (1248), Expect = e-153
 Identities = 259/564 (45%), Positives = 356/564 (63%), Gaps = 10/564 (1%)
 Frame = -1

Query: 1664 LQLIHADLCGPISPPSIARNRYIFVLIDDFSRFMWTFTLKEKGEAFEYFKKFKALVEKKS 1485
            L+L+H DLCGPI+P +    +Y  +L+DD SR MW   L  K EA    K+F+  VE +S
Sbjct: 576  LELVHGDLCGPITPATPGGRKYFLLLVDDMSRHMWIRLLSGKHEAATAIKQFQVGVELES 635

Query: 1484 GKKIITLRTDRGGEFTSKEFTNFCENEGITRHLTAPYTPQQNGVVERRNRTLMGMTRSIL 1305
            G+K+  LRTDRGGEFTS EF ++C + G+ R LTAPY+PQQNGVVERRN+T++   RS+L
Sbjct: 636  GRKLRALRTDRGGEFTSVEFMDYCADHGMRRELTAPYSPQQNGVVERRNQTVVAAARSML 695

Query: 1304 KARDVPNYMWAEGVRHATFLINRVSTRALVNQTPYEAFKGKKPNLEGLRVFGCVAYATGT 1125
            KA  +P   W E V  A +++NR  T+AL   TP+EA+ G++P++E LRVFGCV Y    
Sbjct: 696  KAAGMPACFWGEAVVAAVYVLNRSPTKALNGVTPHEAWHGRRPSVEHLRVFGCVGYVKTV 755

Query: 1124 RPYLHKLDDRSTRLIYIGNEPGTKGFRLFNPKLKKIVVCRDAEFNEELGWKYVAGSETHE 945
            +P L KLDDR TR+++IG E G+K +R+++P  +++ V RD  F+E   W +    ET  
Sbjct: 756  KPNLRKLDDRGTRMVFIGYEQGSKAYRMYDPVARRVCVSRDVVFDEAATWAW-RDPETEA 814

Query: 944  LNPGMFIIEWHGSIDTGCGFVNPGVTDEVEAEDQEAENHHDVDENQPVNT-------EQE 786
                 F +++         FVNP   D V A+  E  +        P +T       E  
Sbjct: 815  TEEEEFTVDF---------FVNP--VDSVVADLGEQASTPVQGGTYPASTATPPSPPEVP 863

Query: 785  VQFEAGNDPN---PVTETQPIMRRSSRVSTKPTRFNDFIMGSSSRTSVANEDQNLLLIED 615
               E  + PN   P T   PI  R         R  D +  +         DQ LL  E 
Sbjct: 864  AGVEFCSPPNSVTPGTNEGPIRYR---------RVQDILSATEPVLDFDYSDQCLLASE- 913

Query: 614  DEPRTFQEAKVSSKWMVAMKQEIESIEKNDSWELVEAPVNVNPIGLKWVFKIKRNPDGSI 435
             EP +  EA+    W  AM++E++SIE N +W   E PV    IGLKWV+K+K++P G +
Sbjct: 914  -EPMSLAEAEQQLCWRQAMQEELKSIEDNQTWSFAELPVGHKAIGLKWVYKVKKDPSGVV 972

Query: 434  NKFKARLVAKGYAQKEGIDYDEVFAPVARIETVRLLISLAAKEAWELHHLDVKSAFLHGE 255
             K KARLVAKGY Q++GID++EVFAPVAR+ETVRLLI++AA + WE+HH+DVKSAFL+G+
Sbjct: 973  VKHKARLVAKGYVQQQGIDFEEVFAPVARMETVRLLIAVAANKGWEIHHMDVKSAFLNGD 1032

Query: 254  LKEQVFVTQPEGFVKKGEERKIYKLKKALYGLKQAPRAWNTKLDRELKQMSFKRCQHEQA 75
            L+E+V+V QP GF++KG+E ++ +LKKALYGLKQAPRAWN KL   L  ++F + + E A
Sbjct: 1033 LEEEVYVVQPPGFIEKGKEGQVLRLKKALYGLKQAPRAWNAKLHNTLISLNFIKSETESA 1092

Query: 74   VYVKKTNKSILIISVYVDDLLVTG 3
            VYV+ T  S LI+ VYVDDL+++G
Sbjct: 1093 VYVRGTGSSRLIVGVYVDDLIISG 1116