BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00029486
         (2247 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OTF86030.1| putative ribonuclease H-like domain-containing pr...  1058   0.0  
gb|OTF94656.1| putative ribonuclease H-like domain-containing pr...  1027   0.0  
gb|OTG07679.1| putative ribonuclease H-like domain-containing pr...  1026   0.0  
ref|XP_015084225.1| PREDICTED: uncharacterized protein LOC107027...   874   0.0  
ref|XP_015084159.1| PREDICTED: LOW QUALITY PROTEIN: uncharacteri...   874   0.0  
dbj|BAK64102.1| gag-pol polyprotein [Eustoma exaltatum subsp. ru...   848   0.0  
gb|KYP64439.1| Retrovirus-related Pol polyprotein from transposo...   742   0.0  
gb|PRQ42978.1| putative RNA-directed DNA polymerase [Rosa chinen...   730   0.0  
gb|PRQ60115.1| putative RNA-directed DNA polymerase [Rosa chinen...   728   0.0  
gb|PRQ52323.1| putative RNA-directed DNA polymerase [Rosa chinen...   725   0.0  
gb|PRQ53465.1| putative RNA-directed DNA polymerase [Rosa chinen...   724   0.0  
dbj|GAU31450.1| hypothetical protein TSUD_72310 [Trifolium subte...   702   0.0  
gb|PRQ42045.1| putative RNA-directed DNA polymerase [Rosa chinen...   691   0.0  
ref|XP_022026592.1| uncharacterized protein LOC110927245 [Helian...   684   0.0  
gb|PRQ42794.1| putative RNA-directed DNA polymerase [Rosa chinen...   683   0.0  
gb|PRQ17544.1| putative RNA-directed DNA polymerase [Rosa chinen...   682   0.0  
ref|XP_022019596.1| uncharacterized protein LOC110919639 [Helian...   672   0.0  
gb|KYP39692.1| Retrovirus-related Pol polyprotein from transposo...   676   0.0  
gb|PRQ41835.1| putative RNA-directed DNA polymerase [Rosa chinen...   677   0.0  
gb|PRQ55789.1| putative RNA-directed DNA polymerase [Rosa chinen...   671   0.0  

>gb|OTF86030.1| putative ribonuclease H-like domain-containing protein [Helianthus
            annuus]
          Length = 1532

 Score = 1058 bits (2737), Expect = 0.0
 Identities = 517/747 (69%), Positives = 603/747 (80%), Gaps = 12/747 (1%)
 Frame = +2

Query: 41   ERHGLYYVDEVIQTSTVMLAHGTTEREAWLWHRRLGHPSASYLRILFPALFPSNKPISCE 220
            ER GLYYVDEV Q+ TV+L+HGT EREAWLWHRRLGHPS  YL ILFP LFPSN    CE
Sbjct: 533  ERGGLYYVDEVTQSGTVLLSHGTVEREAWLWHRRLGHPSTGYLHILFPKLFPSNCKTHCE 592

Query: 221  TCILAKSHRQSFKHNNTRVETPFSLVHSDVWGPAPVIGGQQLRFYVIFVDDCTRMTWIYF 400
            TC+LAKSHR++FK NNTRV+ PFSL+HSDVWGPAPVIGGQ LRF+VIFVDDCTRMTW+Y 
Sbjct: 593  TCMLAKSHRKTFKPNNTRVDEPFSLIHSDVWGPAPVIGGQHLRFFVIFVDDCTRMTWVYL 652

Query: 401  LKNKSEVFEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQSKGIIHQTSCPHT 580
            LKNKSEV +KFT FYTM+ TQF+K+IQ+ R+DNGGE+VN+ MK FFQ+KGIIHQT+CPHT
Sbjct: 653  LKNKSEVLDKFTIFYTMIQTQFQKNIQVFRSDNGGEFVNTSMKHFFQTKGIIHQTTCPHT 712

Query: 581  PEQNGVAERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPTKILKLKTPIXXX 760
            PEQNGVAERKNRILLEITRAL+IES+VPK FWPEAL TATYL+NRLPT++LKLKTP+   
Sbjct: 713  PEQNGVAERKNRILLEITRALLIESQVPKVFWPEALVTATYLINRLPTQVLKLKTPLQVL 772

Query: 761  XXXXXXXXXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGVNQKGYRCYNPKTR 940
                           +FGCT FVHIPKT R KLDPCAEKCVF+GYG+NQKGYRCYNP TR
Sbjct: 773  SEFKKPPSNLTLEPRIFGCTAFVHIPKTNRTKLDPCAEKCVFVGYGMNQKGYRCYNPTTR 832

Query: 941  RMYTTMNCDFLETRFFYTDQHSSQGEESC-DVLSWLKCT--EGWPTHSTTASEANSQDSP 1111
             M+TTMNCDFLET+++YT QHS QGE  C D LSWLK    E   +HST      S ++P
Sbjct: 833  HMFTTMNCDFLETKYYYTSQHSGQGERECQDTLSWLKYVPYEEAVSHSTNDEAPFSTENP 892

Query: 1112 SSNSATQDPPSPDLVSEVSS--PQSMNSP---QHNNSNDLVXXXXXXXXXXXXLISQDHT 1276
            + ++A +   +P+LV EVS+  P S++     + N +N+ V             + Q+  
Sbjct: 893  NISAAPE--VAPNLVPEVSNTHPCSVHDSTEIRENTTNETVEQMSSSTQGDTSPMEQNEH 950

Query: 1277 EPV----LEEVQNKYTLPPRANRGVPARRFSPEKISRSSRYPIANVAEGNLSKEAKAFTA 1444
            E       E+ Q  Y LPPR+NRGVP +R+SPEK S+  RYP+AN+A+GNLS+EAKAF++
Sbjct: 951  EQEDHSPQEDTQGGYVLPPRSNRGVPPKRYSPEKKSQGCRYPVANIAKGNLSEEAKAFSS 1010

Query: 1445 SLYSNNVPSSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEGKKPVGCRWLFTIKYK 1624
            SLYS  +P++ +QAL+S +WK AM+ EM+AL K+ TWEKC+L  GKK VGCRW+FTIKYK
Sbjct: 1011 SLYSEEIPTNTEQALKSRHWKKAMEEEMKALTKNNTWEKCALLVGKKTVGCRWVFTIKYK 1070

Query: 1625 PDGKIERYKARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIAANKDWPLYQFDVKNA 1804
            PDG IERYKARLVAKGYTQTYGIDYSETFSPVA ++TIRVLFS+AANK WPL+QFDVKNA
Sbjct: 1071 PDGTIERYKARLVAKGYTQTYGIDYSETFSPVAKINTIRVLFSVAANKGWPLHQFDVKNA 1130

Query: 1805 FLHGELKEEVYMEAPPGFSHEFKPGEVCRLKKSLYGLKQSPRAWFGRFTLAMKKYGFKQS 1984
            FLHGELKEEVYMEAP GF+  F   EVCRLKKSLYGLKQSPRAWFGRFTLAMK YGFKQS
Sbjct: 1131 FLHGELKEEVYMEAPHGFTVNFGEREVCRLKKSLYGLKQSPRAWFGRFTLAMKNYGFKQS 1190

Query: 1985 NSDHTLFLKRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNEFEMKDLGRLKYFLGI 2164
            NSDHTLFLK+  + +TCLIIYVDDMIITGND+EEI KLK  LF EFEMKDLGRLKYFLGI
Sbjct: 1191 NSDHTLFLKQRNNLITCLIIYVDDMIITGNDKEEITKLKKNLFTEFEMKDLGRLKYFLGI 1250

Query: 2165 EVLRSQHGIFICQKKYILDLLAETGMM 2245
            EVLRS+ GIF+CQKKY+LDLLAETG++
Sbjct: 1251 EVLRSKQGIFMCQKKYVLDLLAETGLI 1277


>gb|OTF94656.1| putative ribonuclease H-like domain-containing protein [Helianthus
            annuus]
          Length = 1139

 Score = 1027 bits (2656), Expect = 0.0
 Identities = 501/762 (65%), Positives = 586/762 (76%), Gaps = 27/762 (3%)
 Frame = +2

Query: 41   ERHGLYYVDEVIQTSTVMLAHGTTEREAWLWHRRLGHPSASYLRILFPALFPSNKPISCE 220
            ER GLYYVDEV    TVMLAHGT  R+AWLWHRRLGHPS  Y  +LFP LFPSN  I CE
Sbjct: 113  ERQGLYYVDEVAHQGTVMLAHGTDNRDAWLWHRRLGHPSHGYSHLLFPKLFPSNGKIDCE 172

Query: 221  TCILAKSHRQSFKHNNTRVETPFSLVHSDVWGPAPVIGGQQLRFYVIFVDDCTRMTWIYF 400
            TC+ AKSHR  FK +NT+V +PFSL+HSDVWGPAPVIGGQ LR++++FVDDCTRMTW+YF
Sbjct: 173  TCLRAKSHRHPFKPSNTKVASPFSLIHSDVWGPAPVIGGQGLRYFILFVDDCTRMTWVYF 232

Query: 401  LKNKSEVFEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQSKGIIHQTSCPHT 580
            LK K+EVFEKF TFY M+ TQF+  IQI R+DNGGE+VN+ MK FFQ+KG+IHQTSC HT
Sbjct: 233  LKTKAEVFEKFVTFYAMIQTQFQTQIQILRSDNGGEFVNTSMKQFFQTKGLIHQTSCAHT 292

Query: 581  PEQNGVAERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPTKILKLKTPIXXX 760
            PEQNGV+ERKNRI+LE+TRAL+IES+VPKSFWPEA+AT+ YLLNRLPTK+LK KTP+   
Sbjct: 293  PEQNGVSERKNRIILEMTRALLIESQVPKSFWPEAVATSVYLLNRLPTKVLKFKTPLDCL 352

Query: 761  XXXXXXXXXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGVNQKGYRCYNPKTR 940
                           +FGCT FVHIPK  R+KL PCAEKCVF+GYG++Q GYRCYNPKTR
Sbjct: 353  SKSANIPHPLTLEPRIFGCTAFVHIPKVNRNKLGPCAEKCVFVGYGIDQIGYRCYNPKTR 412

Query: 941  RMYTTMNCDFLETRFFYTDQHSSQGEESC-DVLSWLKCTEGWPTHSTTASEANSQDSPSS 1117
            +M+TTMN DFLET++FY  Q S QGE  C D LSWL         +TT    ++ +  SS
Sbjct: 413  QMFTTMNVDFLETKYFYEPQLSGQGENECIDPLSWLIQLPSSEEVTTTELPHSTPNQSSS 472

Query: 1118 NSATQDPPSPDLVSEVSSPQSMNSPQHNNSNDLVXXXXXXXXXXXXLI------------ 1261
            N+ TQ   S D  +  +SP +M     NN +                             
Sbjct: 473  NTTTQ---SADHSTTENSPSNMIPEVRNNESSEFTMPCDFETTGEHTDPTTTEPTEHGEP 529

Query: 1262 SQDHTEPVLEEVQ--------------NKYTLPPRANRGVPARRFSPEKISRSSRYPIAN 1399
            + +H EPV+EEV+               +Y LPPR NRGVP +R+SPEK++  SRYP+AN
Sbjct: 530  NVEHVEPVVEEVEPVTEHVELGAAETTGRYPLPPRENRGVPPKRYSPEKVTPRSRYPVAN 589

Query: 1400 VAEGNLSKEAKAFTASLYSNNVPSSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEG 1579
            +A GNLSKEAKA+TA+L S  +PS+ Q+AL SE WK AM+ EMEAL K+ TWEKC+LP G
Sbjct: 590  IATGNLSKEAKAYTAALCSEQMPSTTQEALSSEEWKKAMETEMEALKKNNTWEKCTLPPG 649

Query: 1580 KKPVGCRWLFTIKYKPDGKIERYKARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIA 1759
            KKPVGCRW+F++K++PDG IERYKARLVAKGYTQTYGIDYSETFSP+A +DTIRVLFSIA
Sbjct: 650  KKPVGCRWVFSVKHRPDGTIERYKARLVAKGYTQTYGIDYSETFSPIAKIDTIRVLFSIA 709

Query: 1760 ANKDWPLYQFDVKNAFLHGELKEEVYMEAPPGFSHEFKPGEVCRLKKSLYGLKQSPRAWF 1939
            ANK WPL+QFDVKNAFLHGEL EEVYM+APPGF+  FK GE CRLKKSLYGLKQSPRAWF
Sbjct: 710  ANKGWPLHQFDVKNAFLHGELNEEVYMDAPPGFNENFKAGETCRLKKSLYGLKQSPRAWF 769

Query: 1940 GRFTLAMKKYGFKQSNSDHTLFLKRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNE 2119
            GRFTLAMKKYGFKQSNSDHTLFLKR    VTCLIIYVDDMI+TGNDEEE+  L+ +LF+E
Sbjct: 770  GRFTLAMKKYGFKQSNSDHTLFLKRRGSLVTCLIIYVDDMILTGNDEEEMSMLRDKLFSE 829

Query: 2120 FEMKDLGRLKYFLGIEVLRSQHGIFICQKKYILDLLAETGMM 2245
            FEMKDLGRLKYFLGIEVLRS+ GIFICQ+KY+LDLLAETGM+
Sbjct: 830  FEMKDLGRLKYFLGIEVLRSKQGIFICQRKYVLDLLAETGMI 871


>gb|OTG07679.1| putative ribonuclease H-like domain-containing protein [Helianthus
            annuus]
          Length = 1162

 Score = 1026 bits (2654), Expect = 0.0
 Identities = 502/754 (66%), Positives = 587/754 (77%), Gaps = 19/754 (2%)
 Frame = +2

Query: 41   ERHGLYYVDEVIQTSTVMLAHGTTEREAWLWHRRLGHPSASYLRILFPALFPSNKPISCE 220
            ER GLYYVDEV Q  TVMLAHGT  REAWLWHRRLGHPS  Y  +LFP LFPS   I CE
Sbjct: 113  ERQGLYYVDEVAQQGTVMLAHGTENREAWLWHRRLGHPSVGYSHLLFPKLFPSKGKIDCE 172

Query: 221  TCILAKSHRQSFKHNNTRVETPFSLVHSDVWGPAPVIGGQQLRFYVIFVDDCTRMTWIYF 400
            TC  AKSHRQ FK +NT+V +PFSL+HSDVWGPAPV GGQ LR++++FVDDCTRMTW+YF
Sbjct: 173  TCFRAKSHRQPFKPSNTKVASPFSLIHSDVWGPAPVTGGQGLRYFILFVDDCTRMTWVYF 232

Query: 401  LKNKSEVFEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQSKGIIHQTSCPHT 580
            LK K+EVFEKF TFY M+ TQF+  IQI R+DNGGE+VN+ M+ FF++KG+IHQTSC HT
Sbjct: 233  LKTKAEVFEKFVTFYAMIQTQFQTQIQILRSDNGGEFVNTSMQQFFKTKGLIHQTSCAHT 292

Query: 581  PEQNGVAERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPTKILKLKTPIXXX 760
            PEQNGV+ERKNRI+LE+TRAL+IES+VPKSFWPEA+AT+ YLLNRLPTK LK +TP+   
Sbjct: 293  PEQNGVSERKNRIILEMTRALLIESQVPKSFWPEAVATSVYLLNRLPTKALKFQTPLDCL 352

Query: 761  XXXXXXXXXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGVNQKGYRCYNPKTR 940
                           +FGCT FVHIPK  R+KL PCAEKCVF+GYG++Q GYRCYNPKTR
Sbjct: 353  SKSTNIPHPLTLEPRIFGCTAFVHIPKVNRNKLGPCAEKCVFVGYGIDQMGYRCYNPKTR 412

Query: 941  RMYTTMNCDFLETRFFYTDQHSSQGEESC-DVLSWL-------KCTEGWPTHST-TASEA 1093
            +M+TTMN DFLET++FY  Q S QGE  C D LSWL       + T    THST   S +
Sbjct: 413  QMFTTMNVDFLETKYFYNSQLSGQGENECTDPLSWLIQLPSSEEVTTAELTHSTPNQSSS 472

Query: 1094 NSQDSPSSNSATQDPPSPDLVSEVSSPQSMN-----SPQHNNSNDLVXXXXXXXXXXXXL 1258
            N+    + +S T++ PS +++ EV + ++        P   +    V            +
Sbjct: 473  NTTTQSAEHSTTENSPS-NMIPEVRNIENSECTTYVEPDVEHVEPAVEQVEPVAEEVEPV 531

Query: 1259 ISQDHTEPVLEEVQ-----NKYTLPPRANRGVPARRFSPEKISRSSRYPIANVAEGNLSK 1423
               +H EPV E V+      +Y+ PPR NRGVP +R+SPEK++  SRYP+AN+A GNLSK
Sbjct: 532  T--EHVEPVTEHVEPAETTGRYSFPPRENRGVPPKRYSPEKVAPRSRYPVANIATGNLSK 589

Query: 1424 EAKAFTASLYSNNVPSSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEGKKPVGCRW 1603
            EAKAF A+L S  VPS+ Q+AL+SE WK AM+ EMEAL K+ TWEKC+LP GKKPVGCRW
Sbjct: 590  EAKAFAAALCSEQVPSTTQEALKSEEWKKAMETEMEALKKNNTWEKCTLPPGKKPVGCRW 649

Query: 1604 LFTIKYKPDGKIERYKARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIAANKDWPLY 1783
            +F++K++PDG IERYKARLVAKGYTQTYGIDYSETFSPVA +DTIRVLFSIAANK WPL+
Sbjct: 650  VFSVKHRPDGTIERYKARLVAKGYTQTYGIDYSETFSPVAKIDTIRVLFSIAANKGWPLH 709

Query: 1784 QFDVKNAFLHGELKEEVYMEAPPGFSHEFKPGEVCRLKKSLYGLKQSPRAWFGRFTLAMK 1963
            QFDVKNAFLHGEL EEVYM+APPGF+  FK GE CRLKKSLYGLKQSPRAWFGRFTLAMK
Sbjct: 710  QFDVKNAFLHGELNEEVYMDAPPGFNENFKAGETCRLKKSLYGLKQSPRAWFGRFTLAMK 769

Query: 1964 KYGFKQSNSDHTLFLKRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNEFEMKDLGR 2143
            KYGFKQSNSDHTLFLKR    VTCLIIYVDDMI+TGNDEEE+  L+ +LF+EFEMKDLGR
Sbjct: 770  KYGFKQSNSDHTLFLKRRGSLVTCLIIYVDDMILTGNDEEEMLMLRDKLFSEFEMKDLGR 829

Query: 2144 LKYFLGIEVLRSQHGIFICQKKYILDLLAETGMM 2245
            LKYFLGIEVLRS  GIFICQKKYILDLLAETGM+
Sbjct: 830  LKYFLGIEVLRSNQGIFICQKKYILDLLAETGMI 863


>ref|XP_015084225.1| PREDICTED: uncharacterized protein LOC107027628 [Solanum pennellii]
          Length = 2107

 Score =  874 bits (2257), Expect = 0.0
 Identities = 430/739 (58%), Positives = 527/739 (71%), Gaps = 4/739 (0%)
 Frame = +2

Query: 41   ERHGLYYVDEVIQTSTVMLAHGTTEREAWLWHRRLGHPSASYLRILFPALFPSNKPISCE 220
            ER GLYYV+EV Q    +LA G+ E + W+WHRRLGHPS SYL+ LFP+    +  + CE
Sbjct: 551  ERGGLYYVNEVTQQGNALLAQGSPEYQIWMWHRRLGHPSLSYLKRLFPSFKDIDFVLDCE 610

Query: 221  TCILAKSHRQSFKHNNTRVETPFSLVHSDVWGPAPVIGGQQLRFYVIFVDDCTRMTWIYF 400
             C+LAKSH+ S+  ++T V  PF+L+HSDVWGPAP     +  ++V+FVDDCTRM+W+YF
Sbjct: 611  ACVLAKSHKHSYSPSSTHVSKPFTLIHSDVWGPAPEFAFYKYSYFVLFVDDCTRMSWVYF 670

Query: 401  LKNKSEVFEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQSKGIIHQTSCPHT 580
            LKNKSEV++ F  FY M+ TQF    QI R+DNGGEY+N  MK F    G+IHQT+CP T
Sbjct: 671  LKNKSEVYDVFINFYNMICTQFAAQPQILRSDNGGEYINLDMKQFISDHGLIHQTTCPDT 730

Query: 581  PEQNGVAERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPTKILKLKTPIXXX 760
            P+QNG+AERKNR LLEITRA+++ES VP  FWPEA+ATATYL NRLPTK L  +TP+   
Sbjct: 731  PQQNGIAERKNRTLLEITRAIMLESHVPVHFWPEAIATATYLTNRLPTKPLAYQTPLDTL 790

Query: 761  XXXXXXXXXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGVNQKGYRCYNPKTR 940
                           VFGC V+VH+PK  R+KL+P A KCVF+GYGV QKGYRCY+P   
Sbjct: 791  SSHVSIPSYHSLPPRVFGCVVYVHLPKRIRNKLEPRAIKCVFIGYGVTQKGYRCYDPIQN 850

Query: 941  RMYTTMNCDFLETRFFYTDQHSSQGEESCDVLSWLKCTEGW----PTHSTTASEANSQDS 1108
            ++YT+++C+F E  ++YT Q   QGE + D LSWL   E      PT  +  ++ NS+ S
Sbjct: 851  KIYTSLDCEFFEHSYYYT-QPGPQGETTNDDLSWLIYPEMMDLDPPTQVSNTTDVNSETS 909

Query: 1109 PSSNSATQDPPSPDLVSEVSSPQSMNSPQHNNSNDLVXXXXXXXXXXXXLISQDHTEPVL 1288
             S+ S    P              M + +H  S   V             +S D+     
Sbjct: 910  VSAPSPQTTP--------------MTTTEHPESTS-VEVNSELCTVPTDSVSSDNC---- 950

Query: 1289 EEVQNKYTLPPRANRGVPARRFSPEKISRSSRYPIANVAEGNLSKEAKAFTASLYSNNVP 1468
               QN+Y LP R+ RGVP +R+ PE   + SRYPI  ++  NLS  A AFT SLYS N+P
Sbjct: 951  ---QNRYELPHRSTRGVPPKRYDPEYEDQRSRYPIERISNENLSNTAVAFTTSLYSTNIP 1007

Query: 1469 SSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEGKKPVGCRWLFTIKYKPDGKIERY 1648
             + ++A E E W+ AM+ E  AL K+ TWEKC LP+GKK VGCRW+F+IK++ DG IERY
Sbjct: 1008 RTVEEAFEDEKWRQAMENEYVALEKNHTWEKCILPKGKKKVGCRWVFSIKHRADGTIERY 1067

Query: 1649 KARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIAANKDWPLYQFDVKNAFLHGELKE 1828
            KARLVAKGYTQT+GIDYSETFSPVA +DTIRVLFS+AANKDWPLYQFDVKNAFLHG ++E
Sbjct: 1068 KARLVAKGYTQTFGIDYSETFSPVAKIDTIRVLFSVAANKDWPLYQFDVKNAFLHGSIEE 1127

Query: 1829 EVYMEAPPGFSHEFKPGEVCRLKKSLYGLKQSPRAWFGRFTLAMKKYGFKQSNSDHTLFL 2008
            EVYME PPG+SH+FK GE C+LKK+LYGLKQSPRAWFGRFT AMKK+G++QSNSDHTLF+
Sbjct: 1128 EVYMEPPPGYSHDFKDGEGCKLKKALYGLKQSPRAWFGRFTKAMKKFGYRQSNSDHTLFI 1187

Query: 2009 KRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNEFEMKDLGRLKYFLGIEVLRSQHG 2188
            K    K+TCLIIYVDDMIITGNDEEEI  LK +LF EFEMKDLG LKYFLGIEVLRS  G
Sbjct: 1188 KGANQKITCLIIYVDDMIITGNDEEEIVTLKGKLFQEFEMKDLGNLKYFLGIEVLRSTQG 1247

Query: 2189 IFICQKKYILDLLAETGMM 2245
            IFI Q+KYILDLL ETGM+
Sbjct: 1248 IFIHQRKYILDLLTETGML 1266


>ref|XP_015084159.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC107027526
            [Solanum pennellii]
          Length = 2329

 Score =  874 bits (2257), Expect = 0.0
 Identities = 430/739 (58%), Positives = 527/739 (71%), Gaps = 4/739 (0%)
 Frame = +2

Query: 41   ERHGLYYVDEVIQTSTVMLAHGTTEREAWLWHRRLGHPSASYLRILFPALFPSNKPISCE 220
            ER GLYYV+EV Q    +LA G+ E + W+WHRRLGHPS SYL+ LFP+    +  + CE
Sbjct: 547  ERGGLYYVNEVTQQGNALLAQGSPEYQIWMWHRRLGHPSLSYLKRLFPSFKDIDFVLDCE 606

Query: 221  TCILAKSHRQSFKHNNTRVETPFSLVHSDVWGPAPVIGGQQLRFYVIFVDDCTRMTWIYF 400
             C+LAKSH+ S+  ++T V  PF+L+HSDVWGPAP     +  ++V+FVDDCTRM+W+YF
Sbjct: 607  ACVLAKSHKHSYSPSSTHVSKPFTLIHSDVWGPAPEFAFYKYSYFVLFVDDCTRMSWVYF 666

Query: 401  LKNKSEVFEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQSKGIIHQTSCPHT 580
            LKNKSEV++ F  FY M+ TQF    QI R+DNGGEY+N  MK F    G+IHQT+CP T
Sbjct: 667  LKNKSEVYDVFINFYNMICTQFAAQPQILRSDNGGEYINLDMKQFISDHGLIHQTTCPDT 726

Query: 581  PEQNGVAERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPTKILKLKTPIXXX 760
            P+QNG+AERKNR LLEITRA+++ES VP  FWPEA+ATATYL NRLPTK L  +TP+   
Sbjct: 727  PQQNGIAERKNRTLLEITRAIMLESHVPVHFWPEAIATATYLTNRLPTKPLAYQTPLDTL 786

Query: 761  XXXXXXXXXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGVNQKGYRCYNPKTR 940
                           VFGC V+VH+PK  R+KL+P A KCVF+GYGV QKGYRCY+P   
Sbjct: 787  SSHVSIPSYHSLPPRVFGCVVYVHLPKRIRNKLEPRAIKCVFIGYGVTQKGYRCYDPIQN 846

Query: 941  RMYTTMNCDFLETRFFYTDQHSSQGEESCDVLSWLKCTEGW----PTHSTTASEANSQDS 1108
            ++YT+++C+F E  ++YT Q   QGE + D LSWL   E      PT  +  ++ NS+ S
Sbjct: 847  KIYTSLDCEFFEHSYYYT-QPGPQGETTNDDLSWLIYPEMMDLDPPTQVSNTTDVNSETS 905

Query: 1109 PSSNSATQDPPSPDLVSEVSSPQSMNSPQHNNSNDLVXXXXXXXXXXXXLISQDHTEPVL 1288
             S+ S    P              M + +H  S   V             +S D+     
Sbjct: 906  VSAPSPQTTP--------------MTTTEHPESTS-VEVNSELCTVPTDSVSSDNC---- 946

Query: 1289 EEVQNKYTLPPRANRGVPARRFSPEKISRSSRYPIANVAEGNLSKEAKAFTASLYSNNVP 1468
               QN+Y LP R+ RGVP +R+ PE   + SRYPI  ++  NLS  A AFT SLYS N+P
Sbjct: 947  ---QNRYELPHRSTRGVPPKRYDPEYEDQRSRYPIERISNENLSNTAVAFTTSLYSTNIP 1003

Query: 1469 SSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEGKKPVGCRWLFTIKYKPDGKIERY 1648
             + ++A E E W+ AM+ E  AL K+ TWEKC LP+GKK VGCRW+F+IK++ DG IERY
Sbjct: 1004 RTVEEAFEDEKWRQAMENEYVALEKNHTWEKCILPKGKKKVGCRWVFSIKHRADGTIERY 1063

Query: 1649 KARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIAANKDWPLYQFDVKNAFLHGELKE 1828
            KARLVAKGYTQT+GIDYSETFSPVA +DTIRVLFS+AANKDWPLYQFDVKNAFLHG ++E
Sbjct: 1064 KARLVAKGYTQTFGIDYSETFSPVAKIDTIRVLFSVAANKDWPLYQFDVKNAFLHGSIEE 1123

Query: 1829 EVYMEAPPGFSHEFKPGEVCRLKKSLYGLKQSPRAWFGRFTLAMKKYGFKQSNSDHTLFL 2008
            EVYME PPG+SH+FK GE C+LKK+LYGLKQSPRAWFGRFT AMKK+G++QSNSDHTLF+
Sbjct: 1124 EVYMEPPPGYSHDFKDGEGCKLKKALYGLKQSPRAWFGRFTKAMKKFGYRQSNSDHTLFI 1183

Query: 2009 KRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNEFEMKDLGRLKYFLGIEVLRSQHG 2188
            K    K+TCLIIYVDDMIITGNDEEEI  LK +LF EFEMKDLG LKYFLGIEVLRS  G
Sbjct: 1184 KGANQKITCLIIYVDDMIITGNDEEEIVTLKGKLFQEFEMKDLGNLKYFLGIEVLRSTQG 1243

Query: 2189 IFICQKKYILDLLAETGMM 2245
            IFI Q+KYILDLL ETGM+
Sbjct: 1244 IFIHQRKYILDLLTETGML 1262


>dbj|BAK64102.1| gag-pol polyprotein [Eustoma exaltatum subsp. russellianum]
          Length = 1591

 Score =  848 bits (2190), Expect = 0.0
 Identities = 426/752 (56%), Positives = 523/752 (69%), Gaps = 17/752 (2%)
 Frame = +2

Query: 41   ERHGLYYVDEVIQTSTVMLAHGTTEREAWLWHRRLGHPSASYLRILFPALFPSN-KPISC 217
            E  GLYYVD V+Q  +  LA GT  R+ WLWHRRLGHPS SYL+ LFP LF     P++C
Sbjct: 589  ENGGLYYVDAVVQHGSSNLATGTVTRQIWLWHRRLGHPSFSYLQKLFPTLFSRTLPPLTC 648

Query: 218  ETCILAKSHRQSFKHNNTRVETPFSLVHSDVWGPAPVIGGQQLRFYVIFVDDCTRMTWIY 397
            +TC+ AK  R +++ NNTRV   FSL+HSDVWGP+P       +++VIFVDDC+RMTW+Y
Sbjct: 649  DTCLRAKQPRATYRSNNTRVNKVFSLIHSDVWGPSPHSTPCGFKYFVIFVDDCSRMTWLY 708

Query: 398  FLKNKSEVFEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQSKGIIHQTSCPH 577
             L++KSEV  KF  FY M+HTQ+  +IQI RTDNGGEY    ++ FF+  GIIHQT+CP 
Sbjct: 709  ILRHKSEVATKFVEFYHMIHTQYSSTIQILRTDNGGEYFAGALQQFFRDNGIIHQTTCPD 768

Query: 578  TPEQNGVAERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPTKILKLKTPIXX 757
            TPEQNGVAERKNR LLE+TRAL++ES VP+  WPEA++TATYL NRLPT  L  +TP+  
Sbjct: 769  TPEQNGVAERKNRTLLEMTRALMLESSVPRFLWPEAVSTATYLSNRLPTVTLNHQTPLDV 828

Query: 758  XXXXXXXXXXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGVNQKGYRCYNPKT 937
                            VFGCTVF+HI KT+RDKLDPCAEKCVF+GY   QKGYRCYNP+T
Sbjct: 829  LASQTLIPSLLTLPPKVFGCTVFIHISKTHRDKLDPCAEKCVFVGYASTQKGYRCYNPRT 888

Query: 938  RRMYTTMNCDFLETRFFYTDQHSSQGEESCD-VLSWLKCTEGWPTHSTTAS--EANSQDS 1108
            R+++ T+NC FLET FF+     SQGE + D  L WL     W     T    E     +
Sbjct: 889  RQIHVTLNCVFLETEFFFGTHPRSQGEIATDGYLDWLP-NLSWSVADPTRQVVEPACTIA 947

Query: 1109 PSSNS-----ATQDPPSPDLVSEVS--------SPQSMNSPQHNNSNDLVXXXXXXXXXX 1249
            PS N       T D P  +++ +V+        SP   +SP    +  L           
Sbjct: 948  PSDNMDSIPVPTNDIPRENVLQQVNESIHDDTGSPVPFSSPPFVPNTTLDDSLTTSIAIP 1007

Query: 1250 XXLISQDHTEPVLEEVQNKYTLPPRANRGVPARRFSPEKISRSSRYPIANVAEGNLSKEA 1429
                  DHT P ++E     TLPPR  RGVP  R+SP KI+R++ YP++  +  NL   A
Sbjct: 1008 DPSSELDHTNPCVKEQGR--TLPPRKTRGVPPDRYSPTKIARATLYPVST-SRKNLGHAA 1064

Query: 1430 KAFTASLYSNNVPSSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEGKKPVGCRWLF 1609
            KAF   + S  +P +  +A    NW+ AM  EM+AL K+ TWE+C LP GK+ VGCRW+F
Sbjct: 1065 KAFFTQICSEKIPRTVDEACSQSNWRDAMIMEMDALNKNNTWERCQLPPGKRTVGCRWVF 1124

Query: 1610 TIKYKPDGKIERYKARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIAANKDWPLYQF 1789
            T+KYK DG IER+KARLVAKGYTQTYG+DYSETFSPVA +DTIRVLF+IAA ++WPL+QF
Sbjct: 1125 TVKYKADGTIERHKARLVAKGYTQTYGVDYSETFSPVARIDTIRVLFAIAATENWPLHQF 1184

Query: 1790 DVKNAFLHGELKEEVYMEAPPGFSHEFKPGEVCRLKKSLYGLKQSPRAWFGRFTLAMKKY 1969
            DVKNAFLHG LKEEV+M+ PPGFS EF PG+VC+L ++LYGLKQSPRAWFGRFT AMKK 
Sbjct: 1185 DVKNAFLHGTLKEEVFMDPPPGFSKEFLPGQVCKLNRALYGLKQSPRAWFGRFTQAMKKD 1244

Query: 1970 GFKQSNSDHTLFLKRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNEFEMKDLGRLK 2149
            G++QSN+DHTLF+KR    VTCLIIYVDDMIITGND  EI +L+  LF +FEMKDLG LK
Sbjct: 1245 GYRQSNADHTLFIKRQGSLVTCLIIYVDDMIITGNDANEISRLRDYLFTQFEMKDLGGLK 1304

Query: 2150 YFLGIEVLRSQHGIFICQKKYILDLLAETGMM 2245
            YFLGIEVLRS  GI+I Q+KYILDLL E G++
Sbjct: 1305 YFLGIEVLRSAEGIYISQRKYILDLLTEVGLL 1336


>gb|KYP64439.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1158

 Score =  742 bits (1916), Expect = 0.0
 Identities = 381/754 (50%), Positives = 497/754 (65%), Gaps = 19/754 (2%)
 Frame = +2

Query: 41   ERHGLYYVDEVIQTSTVMLAHGTT--EREAWLWHRRLGHPSASYLRILFPALFPSNKPIS 214
            +R GLYY+++        + H +     +  LWHRRLGHPS  YL+ +FP+LF     ++
Sbjct: 400  KRGGLYYMEDFSVGKAHHMYHPSNIKREQILLWHRRLGHPSFEYLKHVFPSLFSDTSLLN 459

Query: 215  --CETCILAKSHRQSFKHNNTRVETPFSLVHSDVWGPAPVIGGQQLRFYVIFVDDCTRMT 388
              CETCILAKSHR  F  +  + + PF+L+HSDVWGP+P       R++V FVDDCTRMT
Sbjct: 460  LKCETCILAKSHRTHFPLSMNKSDVPFALIHSDVWGPSPKSSSLGFRWFVTFVDDCTRMT 519

Query: 389  WIYFLKNKSEVFEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQSKGIIHQTS 568
            W++ LK K+EVF+ F  F+ M+ TQ+   + I R+DNGGEYVN Q + +FQ  G+IH+T+
Sbjct: 520  WVFVLKQKNEVFQTFQVFHQMIQTQYSAKMCILRSDNGGEYVNQQFRNYFQKHGLIHETT 579

Query: 569  CPHTPEQNGVAERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPTKILKLKTP 748
            CP TP+QNG+AERKNR +LE TRAL++ + VP  +W +A+ TA YL+NR+P+K+L  KTP
Sbjct: 580  CPQTPQQNGIAERKNRHILETTRALLLGAHVPSHYWVDAVTTAVYLINRMPSKVLDFKTP 639

Query: 749  IXXXXXXXXXXXXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGVNQKGYRCYN 928
            +                  VFGC VFVH+ K  R KLDPCA +C+FLGYGV+QKGYRCY+
Sbjct: 640  LQTLSTFVPLPTIQMLPPRVFGCVVFVHLHKNQRTKLDPCAVRCLFLGYGVHQKGYRCYD 699

Query: 929  PKTRRMYTTMNCDFLETRFFYTDQHSSQ---GEESCDVLSWLKCTEGWPTHSTTASEANS 1099
            P TR MY TM+  FLE   FY    S+    GE   + L WL  T  W   + T  +   
Sbjct: 700  PTTRHMYVTMDVTFLELDTFYFPMPSNSTLPGEMQEEELKWL--TFDWFKDTNTVVDDTL 757

Query: 1100 QD--------SPSSNSATQDPPSPDLVSEVSSPQSMNSPQHNNSNDLVXXXXXXXXXXXX 1255
             D        S    + T+ P   ++V    SP   N     N+ ++             
Sbjct: 758  FDKAPQIQTSSIEEVAVTECPQEAEVVESPHSPVPPNDSTPENTTEVNTICTSNISN--- 814

Query: 1256 LISQDHTEPVLEEVQNKYTLPPRANRGVPARRFSPEKISRSSRYPIAN-VAEGNLSKEAK 1432
              + D+ + V+      Y LP R NRG P +R+SPE  S+ S+YPIAN V+   LS+  K
Sbjct: 815  --NVDNVDTVI-----SYRLPHRHNRGNPPKRYSPEVESQRSKYPIANYVSTKALSEPLK 867

Query: 1433 AFTASLYSNNVPSSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEGKKPVGCRWLFT 1612
             F   L S +VP++  +ALES  W  AM+ EMEAL K+ TW    LP+G+K VGC+W+F+
Sbjct: 868  RFADELSSQSVPTNIGEALESPKWTQAMNEEMEALNKNATWTLVPLPQGQKTVGCKWVFS 927

Query: 1613 IKYKPDGKIERYKARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIAANKDWPLYQFD 1792
            IKYK DG IERYKARLVAKG+TQTYG+DY ETFSPVA + T+RVL S+AAN DWPL+Q D
Sbjct: 928  IKYKADGSIERYKARLVAKGFTQTYGVDYQETFSPVAKLSTVRVLLSLAANLDWPLHQLD 987

Query: 1793 VKNAFLHGELKEEVYMEAPPGFSHEF-KPGE--VCRLKKSLYGLKQSPRAWFGRFTLAMK 1963
            VKNAFLHG LKEE+YM+ PPG+  +  K G   VC+L+++LYGLKQSPR WFGR  LAMK
Sbjct: 988  VKNAFLHGHLKEEIYMDIPPGYMEKSGKSGTKVVCKLQRTLYGLKQSPREWFGRLNLAMK 1047

Query: 1964 KYGFKQSNSDHTLFLKRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNEFEMKDLGR 2143
            KYGF+QSN+DHTLFLK  + K+T LI+YVDDMIITG D EEI +L+ +L  EFEMK+LG 
Sbjct: 1048 KYGFQQSNADHTLFLKHRQGKITALIVYVDDMIITGYDSEEITRLQRKLGTEFEMKNLGG 1107

Query: 2144 LKYFLGIEVLRSQHGIFICQKKYILDLLAETGMM 2245
            LK+F GIEV RS+ GIF+ Q+KYILDLL+E G++
Sbjct: 1108 LKHFFGIEVARSKQGIFLSQRKYILDLLSEVGLL 1141


>gb|PRQ42978.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1051

 Score =  730 bits (1884), Expect = 0.0
 Identities = 380/776 (48%), Positives = 499/776 (64%), Gaps = 41/776 (5%)
 Frame = +2

Query: 41   ERHGLYYVD-------EVIQTSTVMLAHGTTEREAWLWHRRLGHPSASYLRILFPALFPS 199
            E+ GLYY++        V +   +     T E + WLWH+RLGHPS  YL+ LFP LF  
Sbjct: 165  EKGGLYYMEMTTAGNHRVSEVHQIQKGTSTNEEQIWLWHKRLGHPSFGYLQTLFPLLFQH 224

Query: 200  NKP--ISCETCILAKSHRQSFKHNNTRVETPFSLVHSDVWGPAPVIGGQQLRFYVIFVDD 373
            NKP    C+TCIL KSHR S+  ++T+   PF LVHSDVWGP P      ++++V+FVDD
Sbjct: 225  NKPSAFKCDTCILGKSHRVSYPLSSTKSIAPFDLVHSDVWGPCPPTPSG-MKWFVLFVDD 283

Query: 374  CTRMTWIYFLKNKSEVFEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQSKGI 553
            CTRM+WIY LKNKS+VF  F TF+ M+ TQF+  I++ R+DNGGEYVN     +  + GI
Sbjct: 284  CTRMSWIYLLKNKSDVFPVFQTFHAMIRTQFQTPIKVLRSDNGGEYVNHLFHQYLATHGI 343

Query: 554  IHQTSCPHTPEQNGVAERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPTKIL 733
            IHQT+CP TP+QNGVAERKNR +LE+ R+++I + +P+SFW +A+ T  YL+NRLPT+ L
Sbjct: 344  IHQTTCPQTPQQNGVAERKNRHILEVARSMLIGAHMPESFWGDAILTTVYLINRLPTQAL 403

Query: 734  KL---------KTPIXXXXXXXXXXXXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVF 886
            +          +TPI                  +FGC  +VHI +  R KLD CAEKC+F
Sbjct: 404  QSTSKETSPPPQTPIQALASHLPLPPTHALDPKIFGCVAYVHIHRNQRTKLDACAEKCIF 463

Query: 887  LGYGVNQKGYRCYNPKTRRMYTTMNCDFLETRFFYTDQHSSQGEES-----------CDV 1033
            +GY   QKGYRCY+P T+R Y +M+  F E    ++ + + QGE             C  
Sbjct: 464  IGYASTQKGYRCYSPTTKRTYVSMDVTFHEHDLHFSPKATLQGENDIEEEQSSRDCLCPP 523

Query: 1034 LSWLKCTEGWPTHSTTASEANSQDS---PSSNS-------ATQDPPSPDLVSEVSSPQSM 1183
            L  +   E   T  T     N++ S   P+S +         Q P     V E+SSP ++
Sbjct: 524  LEPMDIQEHGSTGETRIEHGNTERSNQLPTSEANSRIVENGNQLPTPESPVREISSPSTI 583

Query: 1184 NSPQHNNSNDLVXXXXXXXXXXXXLISQDHTEPVLEEVQNKYTLPPRANRGVPARRFSPE 1363
             S      +D              + S+ +TE      +  + LP R NRG P  ++ P+
Sbjct: 584  PSTPMLPEDDPEVINNPVFEFHDNINSEPNTE-----TEPSHKLPFRKNRGQPKAQYEPD 638

Query: 1364 KISRSSRYPIAN-VAEGNLSKEAKAFTASLYSNNVPSSAQQALESENWKGAMDAEMEALI 1540
              +++ +YPI+N ++   LSK   +F   L +  +P+  Q AL    W  AM+ EMEAL 
Sbjct: 639  PKAKA-KYPISNYMSSHRLSKSYASFVFHLSAIIIPNKVQDALADRKWTKAMEEEMEALQ 697

Query: 1541 KSQTWEKCSLPEGKKPVGCRWLFTIKYKPDGKIERYKARLVAKGYTQTYGIDYSETFSPV 1720
            KSQTWE    P GK+ VGCRW++T+KY  DG ++RYKARLVAKGYTQTYGIDY ETF+PV
Sbjct: 698  KSQTWELVPKPAGKRIVGCRWIYTLKYAADGTLDRYKARLVAKGYTQTYGIDYQETFAPV 757

Query: 1721 ANMDTIRVLFSI-AANKDWPLYQFDVKNAFLHGELKEEVYMEAPPGFSHEFKPGEVCRLK 1897
            A M+T+RVL S+ AAN DWPL QFDVKNAFLHG+LKEEVYM+ PPG+S   + G VC+LK
Sbjct: 758  AKMNTVRVLLSLLAANLDWPLKQFDVKNAFLHGDLKEEVYMDLPPGYSLPSQAGMVCKLK 817

Query: 1898 KSLYGLKQSPRAWFGRFTLAMKKYGFKQSNSDHTLFLKRNRDKVTCLIIYVDDMIITGND 2077
            KSLYGLKQSPRAWFGRF+ +MK++G+KQSNSDHTLFLK  +DK+T LIIYVDDMI+TGND
Sbjct: 818  KSLYGLKQSPRAWFGRFSQSMKQFGYKQSNSDHTLFLKHRKDKLTALIIYVDDMIVTGND 877

Query: 2078 EEEIKKLKTELFNEFEMKDLGRLKYFLGIEVLRSQHGIFICQKKYILDLLAETGMM 2245
             EE+KKL+  L + FEMKDLG LKYFLGIEV RS+ GI + Q+KY++DLL ETG++
Sbjct: 878  LEEVKKLEAHLSSVFEMKDLGGLKYFLGIEVARSREGISLSQRKYVVDLLIETGLL 933


>gb|PRQ60115.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1014

 Score =  728 bits (1878), Expect = 0.0
 Identities = 376/762 (49%), Positives = 496/762 (65%), Gaps = 30/762 (3%)
 Frame = +2

Query: 50   GLYYVDEVIQTSTVMLAHGTTEREAWLWHRRLGHPSASYLRILFPALFPSNKP--ISCET 223
            G + V EV Q   +     T E + WLWH+RLGHPS  YL+ LFP LF  NKP    C+T
Sbjct: 7    GNHRVSEVHQ---IQKGTSTNEEQIWLWHKRLGHPSFGYLQTLFPLLFQHNKPSAFKCDT 63

Query: 224  CILAKSHRQSFKHNNTRVETPFSLVHSDVWGPAPVIGGQQLRFYVIFVDDCTRMTWIYFL 403
            CIL KSHR S+  ++T+   PF LVHSDVWGP P      ++++V+FVDDCTRM+WIY L
Sbjct: 64   CILGKSHRVSYPLSSTKSIAPFDLVHSDVWGPCPPTPSG-MKWFVLFVDDCTRMSWIYLL 122

Query: 404  KNKSEVFEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQSKGIIHQTSCPHTP 583
            KNKS+VF  F TF+ M+ TQF+  I++ R+DNGGEYVN     +  + GIIHQT+CP TP
Sbjct: 123  KNKSDVFPVFQTFHAMIRTQFQTPIKVLRSDNGGEYVNHLFHQYLATHGIIHQTTCPQTP 182

Query: 584  EQNGVAERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPTKILKL-------- 739
            +QNGVAERKNR +LE+ R+++I + +P+SFW +A+ T  YL+NRLPT+ L+         
Sbjct: 183  QQNGVAERKNRHILEVARSMLIGAHMPESFWGDAILTTVYLINRLPTQALQSTSKETSPP 242

Query: 740  -KTPIXXXXXXXXXXXXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGVNQKGY 916
             +TPI                  +FGC  +VHI +  R KLD CAEKC+F+GY   QKGY
Sbjct: 243  PQTPIQALASHLPLPPTHALDPKIFGCVAYVHIHRNQRTKLDACAEKCIFIGYASTQKGY 302

Query: 917  RCYNPKTRRMYTTMNCDFLETRFFYTDQHSSQGEES-----------CDVLSWLKCTEGW 1063
            RCY+P T+R Y +M+  F E    ++ + + QGE             C  L  +   E  
Sbjct: 303  RCYSPTTKRTYVSMDVTFHEHDLHFSPKATLQGENDIEEEQSSGDCLCPPLEPMDIQEHG 362

Query: 1064 PTHSTTASEANSQDS---PSSNSATQDP---PSPD-LVSEVSSPQSMNSPQHNNSNDLVX 1222
             T        N++ S   P+S  A +     P+P+  V ++SSP +  S      +D   
Sbjct: 363  NTGEIRIEHGNTERSNQLPTSEMAVEHGNQLPTPESAVRDISSPSTTPSTPMLPEDDPEV 422

Query: 1223 XXXXXXXXXXXLISQDHTEPVLEEVQNKYTLPPRANRGVPARRFSPEKISRSSRYPIAN- 1399
                       + S  +TE    ++   + LP R NRG P  ++ P+  +++ +YPI+N 
Sbjct: 423  INNHVFECHDNVNSMPNTEIESSDIIGVHKLPFRKNRGQPKVQYEPDPKAKA-KYPISNY 481

Query: 1400 VAEGNLSKEAKAFTASLYSNNVPSSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEG 1579
            ++   LSK   +F   L +  +P+  Q AL +  W  AM+ EMEAL K+ TWE    P G
Sbjct: 482  MSSHRLSKSYASFVFHLSAIIIPNKVQDALANPKWTKAMEDEMEALQKNDTWELVPKPAG 541

Query: 1580 KKPVGCRWLFTIKYKPDGKIERYKARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIA 1759
            K+ VGCRW++T+KY  DG ++RYKARLVAKGYTQTYGIDY ETF+PVA M+T+RVL S+A
Sbjct: 542  KRAVGCRWIYTLKYAADGTLDRYKARLVAKGYTQTYGIDYQETFAPVAKMNTVRVLLSLA 601

Query: 1760 ANKDWPLYQFDVKNAFLHGELKEEVYMEAPPGFSHEFKPGEVCRLKKSLYGLKQSPRAWF 1939
            AN DWPL QFDVKNAFLHG+LKEEVYM+ PPG+S   + G VC+LKKSLYGLKQSPRAWF
Sbjct: 602  ANLDWPLKQFDVKNAFLHGDLKEEVYMDLPPGYSLPSQAGMVCKLKKSLYGLKQSPRAWF 661

Query: 1940 GRFTLAMKKYGFKQSNSDHTLFLKRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNE 2119
            GRF+ +MK++G+KQSNSDHTLFLK  +DK+T LIIYVDDMI+TGND EE+KKL+  L + 
Sbjct: 662  GRFSQSMKQFGYKQSNSDHTLFLKHRKDKLTALIIYVDDMIVTGNDPEEVKKLEAHLSSV 721

Query: 2120 FEMKDLGRLKYFLGIEVLRSQHGIFICQKKYILDLLAETGMM 2245
            FEMKDLG LKYFLGIEV RS+ GI + Q+KY++DLL ETG++
Sbjct: 722  FEMKDLGGLKYFLGIEVARSKEGIALSQRKYVVDLLIETGLL 763


>gb|PRQ52323.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1014

 Score =  725 bits (1871), Expect = 0.0
 Identities = 369/743 (49%), Positives = 489/743 (65%), Gaps = 30/743 (4%)
 Frame = +2

Query: 107  TTEREAWLWHRRLGHPSASYLRILFPALFPSNKP--ISCETCILAKSHRQSFKHNNTRVE 280
            T E + WLWH+RLGHPS  YL+ LFP LF  N+P    C TCIL KSHR +F  ++ +  
Sbjct: 23   TDEEQIWLWHKRLGHPSFGYLQTLFPLLFQHNRPSDFKCNTCILGKSHRVTFPLSSNKSI 82

Query: 281  TPFSLVHSDVWGPAPVIGGQQLRFYVIFVDDCTRMTWIYFLKNKSEVFEKFTTFYTMVHT 460
            +PF LVHSDVWGP P      ++++V+FVDDCTRM+WIY L+NKS+VF  F TF+ M+ T
Sbjct: 83   SPFDLVHSDVWGPCPATPSG-MKWFVLFVDDCTRMSWIYLLRNKSDVFPVFQTFHAMIQT 141

Query: 461  QFKKSIQICRTDNGGEYVNSQMKFFFQSKGIIHQTSCPHTPEQNGVAERKNRILLEITRA 640
            QF+  I++ R+DNGGEYVN     +  + GIIHQT+CP TP+QNGVAERKNR +LE+ R+
Sbjct: 142  QFQTPIKVLRSDNGGEYVNHPFHQYLATHGIIHQTTCPQTPQQNGVAERKNRHILEVARS 201

Query: 641  LIIESKVPKSFWPEALATATYLLNRLPTKILKL---------KTPIXXXXXXXXXXXXXX 793
            ++I + +P+SFW +A+ T  YL+NRLPT+ L+          +TPI              
Sbjct: 202  MLIGAHMPESFWGDAILTTAYLINRLPTQALQSTAKETSPPPQTPIQALASHLPLPPTHA 261

Query: 794  XXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGVNQKGYRCYNPKTRRMYTTMNCDFL 973
                +FGC  +VHI +  R KLD CAEKC+F+GY   QKGYRCY+P T+R Y +M+  F 
Sbjct: 262  LDPKIFGCVAYVHIHRNQRTKLDACAEKCIFIGYASTQKGYRCYSPTTKRTYVSMDVTFH 321

Query: 974  ETRFFYTDQHSSQGEES-----------CDVLSWLKCTEGWPTHSTTASEANSQDS---P 1111
            E    ++ + + QGE             C  L  +   E   T  T     N++ S   P
Sbjct: 322  EHDLHFSPKPTIQGENDIEEEQSSGDCLCPPLEPMDIQEHGNTGETRIEHGNTERSNQLP 381

Query: 1112 SSNSATQDP---PSPD-LVSEVSSPQSMNSPQHNNSNDLVXXXXXXXXXXXXLISQDHTE 1279
            +S  A +     P+P+  V ++SSP +  S      +D              + S  +TE
Sbjct: 382  TSEMAAEHGNQLPTPESAVRDISSPSTTPSTPMLPEDDPEVINNPVFECHDNVNSMPNTE 441

Query: 1280 PVLEEVQNKYTLPPRANRGVPARRFSPEKISRSSRYPIAN-VAEGNLSKEAKAFTASLYS 1456
                ++   + LP R NRG P  ++ P+  +++ +YPI+N ++   LSK   +F   L +
Sbjct: 442  IESSDIIGVHKLPFRKNRGQPKVQYEPDPKAKA-KYPISNYMSSHRLSKSYASFVFHLSA 500

Query: 1457 NNVPSSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEGKKPVGCRWLFTIKYKPDGK 1636
              +P+  Q AL +  W  AM+ EMEAL K+ TWE    P GK+ VGCRW++T+KY  DG 
Sbjct: 501  IIIPNKVQDALANPKWTKAMEDEMEALQKNHTWELVPKPAGKRAVGCRWIYTLKYAADGT 560

Query: 1637 IERYKARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIAANKDWPLYQFDVKNAFLHG 1816
            ++RYKARLVAKGYTQTYGIDY ETF+PVA M+T+RVL S+AAN DWPL QFDVKNAFLHG
Sbjct: 561  LDRYKARLVAKGYTQTYGIDYQETFAPVAKMNTVRVLLSLAANLDWPLKQFDVKNAFLHG 620

Query: 1817 ELKEEVYMEAPPGFSHEFKPGEVCRLKKSLYGLKQSPRAWFGRFTLAMKKYGFKQSNSDH 1996
            +LKEEVYM+ PPG+S   + G VC+LKKSLYGLKQSPRAWFGRF+ +MK++G+KQSNSDH
Sbjct: 621  DLKEEVYMDLPPGYSLPSQAGMVCKLKKSLYGLKQSPRAWFGRFSQSMKQFGYKQSNSDH 680

Query: 1997 TLFLKRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNEFEMKDLGRLKYFLGIEVLR 2176
            TLFLK  +DK+T LIIYVDDMI+TGND EE+KKL+  L + FEMKDLG LKYFLGIEV R
Sbjct: 681  TLFLKHRKDKLTALIIYVDDMIVTGNDPEEVKKLEAHLSSVFEMKDLGGLKYFLGIEVAR 740

Query: 2177 SQHGIFICQKKYILDLLAETGMM 2245
            S+ GI + Q+KY++DLL ETG++
Sbjct: 741  SKEGIALSQRKYVVDLLIETGLL 763


>gb|PRQ53465.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1350

 Score =  724 bits (1868), Expect = 0.0
 Identities = 368/765 (48%), Positives = 491/765 (64%), Gaps = 30/765 (3%)
 Frame = +2

Query: 41   ERHGLYYVD-------EVIQTSTVMLAHGTTEREAWLWHRRLGHPSASYLRILFPALFPS 199
            E+ GLYY++        + +   +     T E + WLWH+RLGHPS  YL+ LFP LF  
Sbjct: 340  EKGGLYYMEMTTAGNRRISEVHHIQKKPSTDEEQIWLWHKRLGHPSFGYLQTLFPLLFQH 399

Query: 200  NKP--ISCETCILAKSHRQSFKHNNTRVETPFSLVHSDVWGPAPVIGGQQLRFYVIFVDD 373
            NKP    C TCIL KSHR +F  ++ +  +PF LVHSDVWGP P      ++++V+FVDD
Sbjct: 400  NKPSDFKCNTCILGKSHRVTFPLSSNKSISPFDLVHSDVWGPCPATPSG-MKWFVLFVDD 458

Query: 374  CTRMTWIYFLKNKSEVFEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQSKGI 553
            CTRM+WIY L+NKS+VF  F TF+ M+ TQF+  I++ R+D GGEYVN     +  + GI
Sbjct: 459  CTRMSWIYLLRNKSDVFPVFQTFHAMIQTQFQTPIKVLRSDKGGEYVNHPFHQYLATHGI 518

Query: 554  IHQTSCPHTPEQNGVAERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPTKIL 733
            +HQT+CP TP+QNGVAERKNR +LE+ R+++I + +P+SFW +A+ T  YL+NRLPT+ L
Sbjct: 519  VHQTTCPQTPQQNGVAERKNRHILEVARSMLIGAHMPESFWGDAILTTAYLINRLPTQAL 578

Query: 734  KL---------KTPIXXXXXXXXXXXXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVF 886
            +          +TPI                  +FGC  +VHI +  R KLD CAEKC+F
Sbjct: 579  QSTAKETSPPPQTPIQALASHLPLPPTHALDPKIFGCVAYVHIHRNQRTKLDACAEKCIF 638

Query: 887  LGYGVNQKGYRCYNPKTRRMYTTMNCDFLETRFFYTDQHSSQGEES-----------CDV 1033
            +GY   QKGYRCY+P T+R Y +M+  F E    ++ + + QGE             C  
Sbjct: 639  IGYASTQKGYRCYSPTTKRTYVSMDVTFHEHDLHFSPKPTIQGENDIEEERSSGDCLCPP 698

Query: 1034 LSWLKCTEGWPTHSTTASEANSQDSPSSNSATQDPPSPDLVSEVSSPQSMNSPQHNNSND 1213
            L  +   E   T  +     +   +   N   Q P     V ++SSP +  S      +D
Sbjct: 699  LEPMDIQEHGNTERSNQLPTSEMAAEHGN---QLPTPESAVRDISSPSTTPSTPMLPEDD 755

Query: 1214 LVXXXXXXXXXXXXLISQDHTEPVLEEVQNKYTLPPRANRGVPARRFSPEKISRSSRYPI 1393
                          + S  +TE    ++   + LP R NRG P  ++ P+  +++ +YPI
Sbjct: 756  PEVINNPVFECHDNVNSMPNTEIESSDIIGVHKLPFRKNRGQPKVQYEPDPKAKA-KYPI 814

Query: 1394 AN-VAEGNLSKEAKAFTASLYSNNVPSSAQQALESENWKGAMDAEMEALIKSQTWEKCSL 1570
            +N ++   LSK   +F   L +  +P+  Q AL +  W  AM+ EMEAL K+ TWE    
Sbjct: 815  SNYMSSHRLSKSYASFVFHLSAIIIPNKVQDALSNPKWTKAMEDEMEALQKNHTWELVPK 874

Query: 1571 PEGKKPVGCRWLFTIKYKPDGKIERYKARLVAKGYTQTYGIDYSETFSPVANMDTIRVLF 1750
            P GK+ VGCRW++T+KY  DG ++RYKARLVAKGYTQTYGIDY ETF+PVA M+T+RVL 
Sbjct: 875  PAGKRAVGCRWIYTLKYAADGTLDRYKARLVAKGYTQTYGIDYQETFAPVAKMNTVRVLL 934

Query: 1751 SIAANKDWPLYQFDVKNAFLHGELKEEVYMEAPPGFSHEFKPGEVCRLKKSLYGLKQSPR 1930
            S+AAN DWPL QFDVKNAFLHG+LKEEVYM+ PPG+S   + G VC+LKKSLYGLKQSPR
Sbjct: 935  SLAANLDWPLKQFDVKNAFLHGDLKEEVYMDLPPGYSLPSQAGMVCKLKKSLYGLKQSPR 994

Query: 1931 AWFGRFTLAMKKYGFKQSNSDHTLFLKRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTEL 2110
            AWFGRF+ +MK++G+KQSNSDHTLFLK  +DK+T LIIYVDDMI+TGND EE+KKL+  L
Sbjct: 995  AWFGRFSQSMKQFGYKQSNSDHTLFLKHRKDKLTALIIYVDDMIVTGNDPEEVKKLEAHL 1054

Query: 2111 FNEFEMKDLGRLKYFLGIEVLRSQHGIFICQKKYILDLLAETGMM 2245
             + FEMKDLG LKYFLGIEV RS+ GI + Q+KY++DLL ETG++
Sbjct: 1055 SSVFEMKDLGGLKYFLGIEVARSKEGIALSQRKYVVDLLIETGLL 1099


>dbj|GAU31450.1| hypothetical protein TSUD_72310 [Trifolium subterraneum]
          Length = 1433

 Score =  702 bits (1811), Expect = 0.0
 Identities = 365/749 (48%), Positives = 488/749 (65%), Gaps = 15/749 (2%)
 Frame = +2

Query: 41   ERHGLYYVDEVIQTSTVMLA--------HGTTEREAWLWHRRLGHPSASYLRILFPALFP 196
            +R  LYY+D   +   ++             T+ E WLWHRR+GH S  Y++ LFP+LF 
Sbjct: 438  KRGKLYYLDLTSKGCNLLCQALKVENSKQNKTKAEVWLWHRRMGHASFDYIKRLFPSLFE 497

Query: 197  S--NKPISCETCILAKSHRQSFKHNNTRVETPFSLVHSDVWGPAPV--IGGQQLRFYVIF 364
            +  +    C+ C LAKSHR SF+    +   PF ++HSDVWGP+ +  +GG   R++V F
Sbjct: 498  NIDSSIFCCDVCELAKSHRTSFRSTLNKSPIPFMVIHSDVWGPSKIQTLGGS--RWFVTF 555

Query: 365  VDDCTRMTWIYFLKNKSEVFEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQS 544
            +DDCTRMTW++ +K+KSEV   F  F+ M+ TQ+   IQ+ R+DNGGEY +S+++ FF+ 
Sbjct: 556  IDDCTRMTWLWLMKSKSEVNLLFQKFHKMIKTQYNAQIQVLRSDNGGEYQSSELQQFFEE 615

Query: 545  KGIIHQTSCPHTPEQNGVAERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPT 724
            +GII+QT+C +TP+QNGV ERKNR LLE+ RA++IE+ +P S+W EALA A Y +NR P+
Sbjct: 616  EGIINQTTCSNTPQQNGVVERKNRHLLEVVRAILIEANMPLSYWGEALAFAVYSINRTPS 675

Query: 725  KILKLKTPIXXXXXXXXXXXXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGVN 904
            + +  +TP+                  +FGC VFVH+ K  R KL P A +CVFLGY ++
Sbjct: 676  RSIAYQTPLKALSDVIIAPSVPNLPLHIFGCVVFVHLHKHQRSKLAPRALRCVFLGYAMH 735

Query: 905  QKGYRCYNPKTRRMYTTMNCDFLETRFFYTDQHSSQGEESCDVLSWLKCTEGWPTHSTTA 1084
            +KGYRCY+P T+RM+ T++  F E   +++ +   QG+   +    + C +   T     
Sbjct: 736  KKGYRCYHPPTQRMFITIDVVFHEELMYFSSKAELQGKYHKEY-DPITCFDVHDTSVINV 794

Query: 1085 SEANSQDSPSSNSATQDPPSPDLVSE-VSSPQSMNSPQHNNSNDLVXXXXXXXXXXXXLI 1261
                +      N   Q  PSP +  E VS PQ  +     N N                 
Sbjct: 795  DLDINSHLEDENVIDQQSPSPSIEDEEVSGPQIHSPSFEGNKNPSFEEIELLANIPYQSS 854

Query: 1262 SQDHTEPVLEEVQNKYTLPPRANRGVPARRFSPEKISRSSRYPIAN-VAEGNLSKEAKAF 1438
            ++D   PVL+    K  LP R NRG+P  R+ PE IS   +YP+++ V+  NLS+  K+F
Sbjct: 855  TED--VPVLDPEFPKKQLPERHNRGIPKSRYEPE-ISSKVKYPMSHYVSNQNLSESNKSF 911

Query: 1439 TASLYSNNVPSSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEGKKPVGCRWLFTIK 1618
               L   ++P+S Q AL    WK AM+ EM +L K++TW+    P+GKKPVGCRW++T+K
Sbjct: 912  ANQLSIISIPNSVQDALADPKWKAAMNEEMNSLQKNETWDLVDCPKGKKPVGCRWVYTVK 971

Query: 1619 YKPDGKIERYKARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIAANKDWPLYQFDVK 1798
            YKPDG+IER+KARLVAKGYTQ YGIDY+ETF+PVA ++T+RVL S+AAN DWPL QFDVK
Sbjct: 972  YKPDGEIERFKARLVAKGYTQAYGIDYTETFAPVAKINTVRVLLSLAANLDWPLQQFDVK 1031

Query: 1799 NAFLHGELKEEVYMEAPPGFSH-EFKPGEVCRLKKSLYGLKQSPRAWFGRFTLAMKKYGF 1975
            NAFLH EL EEVYM+ PPG    E    +VC+LKKSLYGLKQSPRAWFGRFT +M  +G+
Sbjct: 1032 NAFLHRELLEEVYMDLPPGCDKLERHAQKVCKLKKSLYGLKQSPRAWFGRFTKSMIAFGY 1091

Query: 1976 KQSNSDHTLFLKRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNEFEMKDLGRLKYF 2155
             QSNSDHTLFLK+ + K+T LIIYVDDM++TGND EE K L+  L  EFEMKDLG LKYF
Sbjct: 1092 VQSNSDHTLFLKKQQGKITALIIYVDDMVVTGNDPEERKALQEYLSREFEMKDLGSLKYF 1151

Query: 2156 LGIEVLRSQHGIFICQKKYILDLLAETGM 2242
            LGIEV RS+ GIF+ Q+KY LDLL ETGM
Sbjct: 1152 LGIEVSRSKKGIFLSQRKYALDLLQETGM 1180


>gb|PRQ42045.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1226

 Score =  691 bits (1784), Expect = 0.0
 Identities = 358/742 (48%), Positives = 478/742 (64%), Gaps = 19/742 (2%)
 Frame = +2

Query: 77   QTSTVMLAHGTTEREAWLWHRRLGHPSASYLRILFPALF--PSNKPISCETCILAKSHRQ 250
            Q+ T + ++     E WLWHRRLGHPS S ++   P LF   +   + CETC+LAKSHR 
Sbjct: 241  QSRTALTSNSDQLSEIWLWHRRLGHPSFSLMKKSMPTLFIGVNESVLRCETCVLAKSHRA 300

Query: 251  SFKHN-NTRVETPFSLVHSDVWGPA--PVIGGQQLRFYVIFVDDCTRMTWIYFLKNKSEV 421
            ++  + + +   PF L+HSDVWGP+  P + G  +R++V+F+DDCTR++W+  L+ K EV
Sbjct: 301  TYSPSFSNKSVIPFELIHSDVWGPSREPTVSG--MRYFVLFIDDCTRLSWVALLRTKDEV 358

Query: 422  FEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQSKGIIHQTSCPHTPEQNGVA 601
            F  F TF T+V TQ+  +I++ R+DNGGEYVN   K FFQ+ GI+HQT+CP TPEQNGV+
Sbjct: 359  FPAFQTFRTLVQTQYNSTIRVLRSDNGGEYVNHFFKDFFQTHGIVHQTTCPQTPEQNGVS 418

Query: 602  ERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPTKILKLKTPIXXXXXXXXXX 781
            ERKNR LL++ RA++  + +PK  W +A+  +++L+NRLP+ +L+ K P           
Sbjct: 419  ERKNRHLLDMARAILFSAHMPKYLWGDAVQASSHLINRLPSSVLQGKIPFEVLASHVSLP 478

Query: 782  XXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGVNQKGYRCYNPKTRRMYTTMN 961
                    VFGC  FVH+PK  R KLD  A KCVF+GYG  QKGY+CY+P TR+ Y TM+
Sbjct: 479  SFHNLPARVFGCVAFVHVPKNQRSKLDARAIKCVFVGYGGYQKGYKCYHPPTRKYYVTMD 538

Query: 962  CDFLETRFFYTDQHSS-QGEESCDVLSWLKCTEGWPTHSTTASEANSQDSPSSNSATQDP 1138
              F E   +++   +  QGE S     + +    +        E  +Q    S S    P
Sbjct: 539  VTFFEDMSYFSSSDTVLQGENS-----YFEDLYHFEGEELERREEVTQAGDISASLVDIP 593

Query: 1139 --PSPDLV-SEVSSPQSMNSPQHNNSNDLVXXXXXXXXXXXXLIS-QDHTEPVLEEVQN- 1303
               +P++V +E  S Q+  S   N S D              L   +DH+  V   +   
Sbjct: 594  YPSNPEVVEAEAPSIQAPVSITENESEDTTVPSVVAPTPDPQLPGIEDHSSEVCSPIDTN 653

Query: 1304 -------KYTLPPRANRGVPARRFSPEKISRSSRYPIAN-VAEGNLSKEAKAFTASLYSN 1459
                   +Y LP R+ RG P +R+ P  +   S+YP+AN ++   LSK   +F   + + 
Sbjct: 654  SSESNVGQYVLPNRSTRGQPPKRYEPT-VHAKSKYPVANYISTRRLSKSYASFVNQISAV 712

Query: 1460 NVPSSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEGKKPVGCRWLFTIKYKPDGKI 1639
            +VP+  Q AL    W+ AM+ EMEAL K+ TW+    P+GKK VGCRW+FT+K+  DG +
Sbjct: 713  SVPNKVQDALGDPKWRKAMEEEMEALQKNDTWQLVPPPQGKKAVGCRWVFTVKHNADGSV 772

Query: 1640 ERYKARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIAANKDWPLYQFDVKNAFLHGE 1819
             RYKARLVAKG+TQTYGIDY ETF+PVA M+TIRVL S AAN +WPL QFDVKNAFL+GE
Sbjct: 773  NRYKARLVAKGFTQTYGIDYDETFAPVAKMNTIRVLLSCAANLNWPLRQFDVKNAFLYGE 832

Query: 1820 LKEEVYMEAPPGFSHEFKPGEVCRLKKSLYGLKQSPRAWFGRFTLAMKKYGFKQSNSDHT 1999
            L EEVYM  PPG+        VC+L+KSLYGLKQSPRAWFGRFT  M+K+G++QS+SDHT
Sbjct: 833  LAEEVYMSLPPGYVTASPGDFVCKLRKSLYGLKQSPRAWFGRFTQFMRKFGYRQSHSDHT 892

Query: 2000 LFLKRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNEFEMKDLGRLKYFLGIEVLRS 2179
            LFLK  + KVT LIIYVDDM+ITGND  E+  L+ +L +EFEMKDLG LKYFLGIEV R 
Sbjct: 893  LFLKHQQGKVTALIIYVDDMVITGNDTMEMDILQRQLASEFEMKDLGELKYFLGIEVARG 952

Query: 2180 QHGIFICQKKYILDLLAETGMM 2245
            + GI++CQ+KYILDLL ETGM+
Sbjct: 953  REGIYLCQRKYILDLLTETGML 974


>ref|XP_022026592.1| uncharacterized protein LOC110927245 [Helianthus annuus]
          Length = 1084

 Score =  684 bits (1766), Expect = 0.0
 Identities = 344/582 (59%), Positives = 421/582 (72%), Gaps = 10/582 (1%)
 Frame = +2

Query: 482  ICRTDNGGEYVNSQMKFFFQSKGIIHQTSCPHTPEQNGVAERKNRILLEITRALIIESKV 661
            I R+DNG E+VN  MK FFQ  G+IHQT+CP+TP+QNG +ERKNR LLE TRA++IES V
Sbjct: 505  ILRSDNGTEFVNKPMKTFFQENGLIHQTTCPNTPQQNGTSERKNRTLLEKTRAIMIESHV 564

Query: 662  PKSFWPEALATATYLLNRLPTKILKLKTPIXXXXXXXXXXXXXXXXXXVFGCTVFVHIPK 841
            P S+WPEALAT+ YL+NRLPT+IL  KTP+                  V GC+VF+H PK
Sbjct: 565  PLSYWPEALATSAYLVNRLPTQILGHKTPLDVLATQVKVPSIMTLPPRVLGCSVFIHTPK 624

Query: 842  TYRDKLDPCAEKCVFLGYGVNQKGYRCYNPKTRRMYTTMNCDFLETRFFYTDQHSSQGE- 1018
            T R+KL+ CAEKCVF GYGV+QKGYRCYN  TRR++ TM+ DF+E+ +F+  Q S+QGE 
Sbjct: 625  TNRNKLNACAEKCVFNGYGVHQKGYRCYNLVTRRVHVTMDLDFIESDYFFDHQSSAQGEK 684

Query: 1019 --ESCDVLSWL---KCTEGWPTH----STTASEANSQDSPSSNSATQDPPSPDLVSEVSS 1171
              ES D   WL    C+    T     ++  + AN ++    +  T D P  D+  EV +
Sbjct: 685  ISESLDWFDWLLYHSCSTDVSTEPVDGASEPASANVEEDDELSHTTNDSPKDDVQHEVEA 744

Query: 1172 PQSMNSPQHNNSNDLVXXXXXXXXXXXXLISQDHTEPVLEEVQNKYTLPPRANRGVPARR 1351
             +  +   +N  ND               +   H E   EE QN   LPPR NRGVP  R
Sbjct: 745  REPNSDMANNEVNDSQHHENSTNVTNHDRLESSHVEH--EEQQNTPVLPPRRNRGVPPNR 802

Query: 1352 FSPEKISRSSRYPIANVAEGNLSKEAKAFTASLYSNNVPSSAQQALESENWKGAMDAEME 1531
            +SPE  SR+S+YP+     G +++ AKAF+A+L S  +P++ Q+A E+  W+ AM+ E+E
Sbjct: 803  YSPEHTSRTSKYPV-KTDRGRVAQVAKAFSATLLSEKIPTTVQEAEETTEWREAMNLEIE 861

Query: 1532 ALIKSQTWEKCSLPEGKKPVGCRWLFTIKYKPDGKIERYKARLVAKGYTQTYGIDYSETF 1711
            AL KS TWEKC+LP+GKKPVGC+W+F IKYK DG IER+KARLVAKGYTQTYGIDYSETF
Sbjct: 862  ALKKSSTWEKCTLPQGKKPVGCKWVFNIKYKSDGTIERHKARLVAKGYTQTYGIDYSETF 921

Query: 1712 SPVANMDTIRVLFSIAANKDWPLYQFDVKNAFLHGELKEEVYMEAPPGFSHEFKPGEVCR 1891
            SPVA +DTIRVLFS+AANKDWPL+QFDVKNAFLHG+LKEEVYM+ PPGFS +FK  EVCR
Sbjct: 922  SPVAKIDTIRVLFSVAANKDWPLHQFDVKNAFLHGDLKEEVYMDPPPGFSDDFKGNEVCR 981

Query: 1892 LKKSLYGLKQSPRAWFGRFTLAMKKYGFKQSNSDHTLFLKRNRDKVTCLIIYVDDMIITG 2071
            LKK+LYGLKQSPRAWFG+FT+AMK+YG+KQSN+DHTLF KR    VTCLIIYVD MIITG
Sbjct: 982  LKKALYGLKQSPRAWFGKFTMAMKRYGYKQSNADHTLFYKRRGTLVTCLIIYVDYMIITG 1041

Query: 2072 NDEEEIKKLKTELFNEFEMKDLGRLKYFLGIEVLRSQHGIFI 2197
            +DEEEI  L+  LF EFEMKDLG LKYFLGIEVLRS+ GIFI
Sbjct: 1042 SDEEEINSLRKNLFTEFEMKDLGGLKYFLGIEVLRSKKGIFI 1083



 Score = 63.9 bits (154), Expect = 1e-06
 Identities = 29/45 (64%), Positives = 32/45 (71%)
 Frame = +2

Query: 41  ERHGLYYVDEVIQTSTVMLAHGTTEREAWLWHRRLGHPSASYLRI 175
           E+ GLYYVDEV+     MLAHGTTER+ WLWHRRLG      LRI
Sbjct: 443 EQGGLYYVDEVVHMGHAMLAHGTTERQLWLWHRRLGEMFGVRLRI 487


>gb|PRQ42794.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1226

 Score =  683 bits (1763), Expect = 0.0
 Identities = 356/742 (47%), Positives = 475/742 (64%), Gaps = 19/742 (2%)
 Frame = +2

Query: 77   QTSTVMLAHGTTEREAWLWHRRLGHPSASYLRILFPALF--PSNKPISCETCILAKSHRQ 250
            Q+ T + ++     E WLWHRRLGHPS S ++   P LF   +   + CETC+LAKSHR 
Sbjct: 241  QSRTALTSNSDKLSEVWLWHRRLGHPSFSLMKKSMPTLFIGVNESVLRCETCVLAKSHRA 300

Query: 251  SFKHN-NTRVETPFSLVHSDVWGPA--PVIGGQQLRFYVIFVDDCTRMTWIYFLKNKSEV 421
            ++  + + +   PF L+HSDVWGP+  P + G  +R++V+F+DDCTR++W+  L+ K EV
Sbjct: 301  TYPPSFSNKTVIPFELIHSDVWGPSREPTVSG--MRYFVLFIDDCTRLSWVALLRTKDEV 358

Query: 422  FEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQSKGIIHQTSCPHTPEQNGVA 601
            F  F TF T+V TQ+  +I++ R+DNGGEYVN   K FFQ+ GI+HQT+CP TPEQNGV+
Sbjct: 359  FPAFQTFRTLVQTQYNSTIRVLRSDNGGEYVNHFFKDFFQTHGIVHQTTCPQTPEQNGVS 418

Query: 602  ERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPTKILKLKTPIXXXXXXXXXX 781
            ERKNR LL++ RA++  + +PK  W +A+  +++L+NRLP+ +L+ K P           
Sbjct: 419  ERKNRHLLDMARAILFSAHMPKYLWGDAVQASSHLINRLPSSVLQGKIPFEVLASHVSLP 478

Query: 782  XXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGVNQKGYRCYNPKTRRMYTTMN 961
                    VFGC  FVH+PK  R KLD  A KCVF+GYG  QKGY+CY+P TR+ Y TM+
Sbjct: 479  SFHNLPARVFGCVAFVHVPKNQRSKLDARAIKCVFVGYGGYQKGYKCYHPPTRKYYVTMD 538

Query: 962  CDFLETRFFYTDQHSS-QGEESCDVLSWLKCTEGWPTHSTTASEANSQDSPSSNSATQDP 1138
              F E   +++   +  QGE S     + +    +        E  +Q    S S    P
Sbjct: 539  VTFFEDMSYFSSSDTVLQGENS-----YFEDLYHFEGEELERGEEVTQAGDISASLVDIP 593

Query: 1139 --PSPDLV-SEVSSPQSMNSPQHNNSNDLVXXXXXXXXXXXXLISQD-HTEPVL------ 1288
               +P++V +E  S Q+  S   N S D              L   + H+  V       
Sbjct: 594  YPSNPEVVEAEAPSIQAPVSITENESEDTTVPSVVAPTPEPQLPGIEVHSSEVCSPTDTN 653

Query: 1289 --EEVQNKYTLPPRANRGVPARRFSPEKISRSSRYPIAN-VAEGNLSKEAKAFTASLYSN 1459
              E    +Y LP R+ RG P + + P  +   S+YP+AN ++   LSK   +F   + + 
Sbjct: 654  SSESNVGQYVLPNRSTRGQPPKSYEPT-VHAKSKYPVANYMSTRRLSKSYASFVNQISAV 712

Query: 1460 NVPSSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEGKKPVGCRWLFTIKYKPDGKI 1639
            +VP+  Q AL    W+ AM+ EMEAL K+ TW+    P+GKK VGCRW+FT+K+  DG +
Sbjct: 713  SVPNKVQDALGDPKWRKAMEEEMEALQKNDTWQLVPPPQGKKAVGCRWVFTVKHNADGSV 772

Query: 1640 ERYKARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIAANKDWPLYQFDVKNAFLHGE 1819
             RYKARLVAKG+TQTYGIDY ETF+PVA M+TIRVL S AAN +WPL QFDVKNAFL+GE
Sbjct: 773  NRYKARLVAKGFTQTYGIDYDETFAPVAKMNTIRVLLSCAANLNWPLRQFDVKNAFLYGE 832

Query: 1820 LKEEVYMEAPPGFSHEFKPGEVCRLKKSLYGLKQSPRAWFGRFTLAMKKYGFKQSNSDHT 1999
            L EEVYM  PPG+        VC+L+KSLYGLKQSPRAWFGRFT  M+K+G++QS+SDHT
Sbjct: 833  LAEEVYMSLPPGYVTASPGDFVCKLRKSLYGLKQSPRAWFGRFTQFMRKFGYRQSHSDHT 892

Query: 2000 LFLKRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNEFEMKDLGRLKYFLGIEVLRS 2179
            LFLK  +  VT LIIYVDDM+ITGND  E+  L+ +L +EFEMKDLG LKYFLGIEV R 
Sbjct: 893  LFLKHQQGNVTALIIYVDDMVITGNDTMEMDILQRQLASEFEMKDLGELKYFLGIEVARG 952

Query: 2180 QHGIFICQKKYILDLLAETGMM 2245
            + GI++CQ+KYILDLL ETGM+
Sbjct: 953  REGIYLCQRKYILDLLTETGML 974


>gb|PRQ17544.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1226

 Score =  682 bits (1761), Expect = 0.0
 Identities = 356/742 (47%), Positives = 475/742 (64%), Gaps = 19/742 (2%)
 Frame = +2

Query: 77   QTSTVMLAHGTTEREAWLWHRRLGHPSASYLRILFPALF--PSNKPISCETCILAKSHRQ 250
            Q+ T + ++     E WLWHRRLGHPS S ++   P LF   +   + CETC+LAKSHR 
Sbjct: 241  QSRTALTSNSDKLSEVWLWHRRLGHPSFSLMKKYMPTLFIGVNESVLRCETCVLAKSHRA 300

Query: 251  SFKHN-NTRVETPFSLVHSDVWGPA--PVIGGQQLRFYVIFVDDCTRMTWIYFLKNKSEV 421
            ++  + + +   PF L+HSDVWGP+  P + G  +R++V+F+DDCTR++W+  L+ K EV
Sbjct: 301  TYPPSFSNKSVIPFELIHSDVWGPSREPTVSG--MRYFVLFIDDCTRLSWVALLRTKDEV 358

Query: 422  FEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQSKGIIHQTSCPHTPEQNGVA 601
            F  F TF T+V TQ+  +I++ R+DNGGEYVN   K FFQ+ GI+HQT+CP TPEQNGV+
Sbjct: 359  FPAFQTFRTLVQTQYNSTIRVLRSDNGGEYVNHFFKDFFQTHGIVHQTTCPQTPEQNGVS 418

Query: 602  ERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPTKILKLKTPIXXXXXXXXXX 781
            ERKNR LL++ RA++  + +PK  W +A+  +++L+NRLP+ +L+ K P           
Sbjct: 419  ERKNRHLLDMARAILFSAHMPKYLWGDAVQASSHLINRLPSSVLQGKIPFEVLASHVSLP 478

Query: 782  XXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGVNQKGYRCYNPKTRRMYTTMN 961
                    VFGC  FVH+PK  R KLD  A KCVF+GYG  QKGY+CY+P TR+ Y TM+
Sbjct: 479  SFHNLPARVFGCVAFVHVPKNQRSKLDARAIKCVFVGYGGYQKGYKCYHPPTRKYYVTMD 538

Query: 962  CDFLETRFFYTDQHSS-QGEESCDVLSWLKCTEGWPTHSTTASEANSQDSPSSNSATQDP 1138
              F E   +++   +  QGE S     + +    +        E  +Q    S S    P
Sbjct: 539  VTFFEDMSYFSSSDTVLQGENS-----YFEDLYHFEGEELERGEEVTQAGDISASLVDIP 593

Query: 1139 --PSPDLV-SEVSSPQSMNSPQHNNSNDLVXXXXXXXXXXXXLISQD-HTEPVL------ 1288
               +P++V +E  S Q+  S   N S D              L   + H+  V       
Sbjct: 594  YPSNPEVVEAEAPSIQAPVSITENESEDTTVPSVVAPTPEPQLPGIEVHSSEVCSPTDTN 653

Query: 1289 --EEVQNKYTLPPRANRGVPARRFSPEKISRSSRYPIAN-VAEGNLSKEAKAFTASLYSN 1459
              E    +Y LP R+ RG P +R+ P  +   S+YP+AN ++   LSK   +F   + + 
Sbjct: 654  SSESNVGQYVLPNRSTRGQPPKRYEPT-VHAKSKYPVANYMSTRRLSKSYASFVNQISAV 712

Query: 1460 NVPSSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEGKKPVGCRWLFTIKYKPDGKI 1639
            +VP+  Q AL    W+ AM+ EMEAL K+ TW+    P+ KK VGCRW+FT+K+  DG +
Sbjct: 713  SVPNKVQDALGDPKWRKAMEEEMEALQKNDTWQLVPPPQDKKAVGCRWVFTVKHNADGSV 772

Query: 1640 ERYKARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIAANKDWPLYQFDVKNAFLHGE 1819
             RYKARLVAKG+TQTYGIDY ETF+PVA M+TIRVL S AAN +WPL QFDVKNAFL+GE
Sbjct: 773  NRYKARLVAKGFTQTYGIDYDETFAPVAKMNTIRVLLSCAANLNWPLRQFDVKNAFLYGE 832

Query: 1820 LKEEVYMEAPPGFSHEFKPGEVCRLKKSLYGLKQSPRAWFGRFTLAMKKYGFKQSNSDHT 1999
            L EEVYM  PPG+        VC+L+KSLYGLKQSPRAWFGRFT  M+K+G++QS+SDHT
Sbjct: 833  LAEEVYMSLPPGYVTASPGDFVCKLRKSLYGLKQSPRAWFGRFTQFMRKFGYRQSHSDHT 892

Query: 2000 LFLKRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNEFEMKDLGRLKYFLGIEVLRS 2179
            LFLK  +  VT LIIYVDDM+ITGND  E+  L+ +L +EFEMKDLG LKYFLGIEV R 
Sbjct: 893  LFLKHQQGNVTALIIYVDDMVITGNDTMEMDILQRQLASEFEMKDLGELKYFLGIEVARG 952

Query: 2180 QHGIFICQKKYILDLLAETGMM 2245
            + GI++CQ+KYILDLL ETGM+
Sbjct: 953  REGIYLCQRKYILDLLTETGML 974


>ref|XP_022019596.1| uncharacterized protein LOC110919639 [Helianthus annuus]
          Length = 918

 Score =  672 bits (1734), Expect = 0.0
 Identities = 341/516 (66%), Positives = 390/516 (75%), Gaps = 6/516 (1%)
 Frame = +2

Query: 542  SKGIIHQTSCPHTPEQNGVAERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLP 721
            S G+IHQTSCPHTPEQNG  ERKNRILLEITRAL+IES+VP SFWPEAL TATYL+NRLP
Sbjct: 406  STGVIHQTSCPHTPEQNGTVERKNRILLEITRALLIESQVPTSFWPEALNTATYLINRLP 465

Query: 722  TKILKLKTPIXXXXXXXXXXXXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGV 901
            TK L LKTP+                  V GCT FVHI K  R KL P AE CVF+GYGV
Sbjct: 466  TKALDLKTPLQALSEFTKLPLAFTLQPRVLGCTAFVHIAKIDRGKLGPYAENCVFVGYGV 525

Query: 902  NQKGYRCYNPKTRRMYTTMNCDFLETRFFYTDQHSSQGEESCD-VLSWLKCTEGWP--TH 1072
             QKGYRCY+PK R MYTTMNCDFLET FFYT QHS QGE+  D  LSWLK         H
Sbjct: 526  KQKGYRCYSPKKRHMYTTMNCDFLETNFFYTSQHSGQGEKQYDDTLSWLKWAPSTEEVNH 585

Query: 1073 STTASEANSQDS--PSSNSATQDPPSPDLVSEVSSPQSM-NSPQHNNSNDLVXXXXXXXX 1243
            ST      SQ S  P+ ++  QDPPSP  VSEVS+ Q+  ++  H N N  +        
Sbjct: 586  STQHESLASQQSGEPTISATNQDPPSP--VSEVSNSQTHEDNISHENQN--IDISDNHEM 641

Query: 1244 XXXXLISQDHTEPVLEEVQNKYTLPPRANRGVPARRFSPEKISRSSRYPIANVAEGNLSK 1423
                 + ++  E + EE  ++Y LPPR NRGVP +R+SPEK +RSS+YP+AN+A+GNLSK
Sbjct: 642  PIENTVQEEQGEQIQEETTDRYVLPPRVNRGVPPKRYSPEKQTRSSKYPMANIAKGNLSK 701

Query: 1424 EAKAFTASLYSNNVPSSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEGKKPVGCRW 1603
            EAKAFT+SLY   +P+S +QAL+S+NWK AM+ EMEALI++ TWEKC+LP GK PVGCRW
Sbjct: 702  EAKAFTSSLYDEQIPNSMEQALDSKNWKDAMETEMEALIRNNTWEKCNLPPGKNPVGCRW 761

Query: 1604 LFTIKYKPDGKIERYKARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIAANKDWPLY 1783
            +FTIK+K DG IERYKARLVAKGYTQTYGI   ETFSPVA +DTIRVLFSIAA+K WPL+
Sbjct: 762  VFTIKHKADGTIERYKARLVAKGYTQTYGI---ETFSPVAKIDTIRVLFSIAADKGWPLH 818

Query: 1784 QFDVKNAFLHGELKEEVYMEAPPGFSHEFKPGEVCRLKKSLYGLKQSPRAWFGRFTLAMK 1963
            QFDVKNAFLHGELKEEVYMEAPPGF+  FK  +VCRLKK+LYGLKQSPRAWFGRFT AMK
Sbjct: 819  QFDVKNAFLHGELKEEVYMEAPPGFTKTFKTKKVCRLKKTLYGLKQSPRAWFGRFTYAMK 878

Query: 1964 KYGFKQSNSDHTLFLKRNRDKVTCLIIYVDDMIITG 2071
             YGF+QSNSDHTLFLK   + VTCLIIYVDDMIITG
Sbjct: 879  GYGFQQSNSDHTLFLKHKGNMVTCLIIYVDDMIITG 914



 Score = 72.8 bits (177), Expect = 2e-09
 Identities = 32/43 (74%), Positives = 35/43 (81%)
 Frame = +2

Query: 41  ERHGLYYVDEVIQTSTVMLAHGTTEREAWLWHRRLGHPSASYL 169
           ER GLYYV+EV Q  TVMLAHGTT+REAWLWHRRLGH S   +
Sbjct: 368 ERQGLYYVEEVTQHGTVMLAHGTTDREAWLWHRRLGHLSTGVI 410


>gb|KYP39692.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1082

 Score =  676 bits (1743), Expect = 0.0
 Identities = 358/740 (48%), Positives = 464/740 (62%), Gaps = 32/740 (4%)
 Frame = +2

Query: 122  AWLWHRRLGHPSASYLRILFPALFPSNKP--ISCETCILAKSHRQSFKHNNTRVETPFSL 295
            AWLWH+RLGH S  YL+ LFP LF +  P    C TC +AKSHR  F  +  +   PF +
Sbjct: 112  AWLWHKRLGHLSFGYLQKLFPHLFSNCHPSKFQCSTCEMAKSHRIPFYPSLNKSCIPFQV 171

Query: 296  VHSDVWGPAPVIGGQQLRFYVIFVDDCTRMTWIYFLKNKSEVFEKFTTFYTMVHTQFKKS 475
            +HSD+WGPA V       +YV F+D+CTRM WI  LK+K++VF  F  F+ MV TQF  S
Sbjct: 172  IHSDIWGPAKVPSFSHSYYYVSFIDECTRMVWISLLKHKNDVFPVFQKFHNMVQTQFNTS 231

Query: 476  IQICRTDNGGEYVNSQMKFFFQSKGIIHQTSCPHTPEQNGVAERKNRILLEITRALIIES 655
            IQI +TDNG EY N     F  SKGI HQTSC +TP+QNG+AERKNR LLE+ RA + + 
Sbjct: 232  IQIFQTDNGLEYKNGPFSEFLTSKGIKHQTSCTYTPQQNGLAERKNRQLLEVVRASLFDM 291

Query: 656  KVPKSFWPEALATATYLLNRLPTKILKLKTPIXXXXXXXXXXXXXXXXXXVFGCTVFVHI 835
             VP  +W EA+ +A YL+NR P+ +L   TP                   VFGCT +VH+
Sbjct: 292  NVPSHYWGEAVLSAAYLINRTPSSVLGFLTPQQKLETFFSIPHVMNLEPRVFGCTAYVHV 351

Query: 836  PKTYRDKLDPCAEKCVFLGYGVNQKGYRCYNPKTRRMYTTMNCDFLETRFFYTD---QHS 1006
            PK  R KLDPCA+KC+F+GY   QKGYRC++P+T +M+ T+   F E+  FY+      S
Sbjct: 352  PKKLRSKLDPCAKKCIFVGYSDVQKGYRCFDPQTHKMHVTLEVSFRESEPFYSGGVTPSS 411

Query: 1007 SQGE-------ESCDVLSWLKCTEGWPTHSTTASEANSQDSPSSNSATQDPPSPDLVSEV 1165
            SQGE       E C  L         P   T  S       P+ N      PSP++ + +
Sbjct: 412  SQGEIHHIREEEFCLPL---------PMTPTPTSPLTMDSPPNQN------PSPEVFTNL 456

Query: 1166 SSPQSMNS--PQHNNSNDLVXXXXXXXXXXXXLISQDHTEPVLE----EVQNKYT----- 1312
                 +N+  P  N +  L               S+ H EP  E     V N  T     
Sbjct: 457  PGTDLVNASHPPQNETPSLPYIPESHVMDS----SETHLEPTTEVTSVPVVNSSTPTSSN 512

Query: 1313 -------LPPRANRGVPARRFSPEKISRSSRYPIANVAEGNLSKEAKAFTASLYSN-NVP 1468
                      R N+G+P   + P+   +  +YPI++    +   E+ A T    S  ++P
Sbjct: 513  THNIQIRRSERQNKGIPKPVYEPDPRVKV-KYPISSYVSSHRLSESYALTVDQLSIVSIP 571

Query: 1469 SSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEGKKPVGCRWLFTIKYKPDGKIERY 1648
            +S Q+ALE   WK AM+ EMEAL K++TW+  SLP GKK +GC+W++T+K K DG I++Y
Sbjct: 572  NSVQEALEDPRWKQAMNIEMEALQKNETWKLTSLPSGKKTIGCKWVYTVKLKADGSIDKY 631

Query: 1649 KARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIAANKDWPLYQFDVKNAFLHGELKE 1828
            KARLVAKGYTQ YG+DY +TF+PVA ++TIR+L SIAAN+DWPL QFDVKNAFL+G+L+E
Sbjct: 632  KARLVAKGYTQKYGVDYQDTFAPVAKLNTIRILISIAANRDWPLKQFDVKNAFLNGDLEE 691

Query: 1829 EVYMEAPPGFS-HEFKPGEVCRLKKSLYGLKQSPRAWFGRFTLAMKKYGFKQSNSDHTLF 2005
            EVYME PPG      K   VC+LKK+LYGLKQSPRAWFGR TLAMKK+G+KQSNSDHTLF
Sbjct: 692  EVYMEVPPGVQLAPSKESVVCKLKKALYGLKQSPRAWFGRLTLAMKKFGYKQSNSDHTLF 751

Query: 2006 LKRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNEFEMKDLGRLKYFLGIEVLRSQH 2185
            +K  + KV  LI+YVDDM++TG+D EE+K L+  L  EFEMKDLG+LKYFLGIE+ RS+ 
Sbjct: 752  IKHTKGKVAILIVYVDDMVLTGDDVEEMKLLEKRLAAEFEMKDLGQLKYFLGIEIARSEQ 811

Query: 2186 GIFICQKKYILDLLAETGMM 2245
            GI + Q+KY+LDLL+ETGM+
Sbjct: 812  GISLSQRKYVLDLLSETGML 831


>gb|PRQ41835.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1245

 Score =  677 bits (1748), Expect = 0.0
 Identities = 354/770 (45%), Positives = 494/770 (64%), Gaps = 36/770 (4%)
 Frame = +2

Query: 44   RHGLYYVDEVIQTSTVM----LAHGTTEREA--WLWHRRLGHPSASYLRILFPALFP--S 199
            R  LYY+D   + +  +     A G  + +A  WLWHRRLGH S  YLR L P LF   S
Sbjct: 228  RGNLYYLDLTDKGNQKLGQAHKAGGVEDAKAAVWLWHRRLGHLSFGYLRKLKPHLFSGVS 287

Query: 200  NKPISCETCILAKSHRQSFKHNNTRVETPFSLVHSDVWGPAPVIGGQQLRFYVIFVDDCT 379
            +    C  C LAKSHR S+  +  +   PF  VHSDVWGPA        +++V F+D+CT
Sbjct: 288  DSDFKCHVCELAKSHRISYSPSFNKSSIPFMTVHSDVWGPAKYSTMSGAKYFVTFIDECT 347

Query: 380  RMTWIYFLKNKSEVFEKFTTFYTMVHTQFKKSIQICRTDNGGEYVNSQMKFFFQSKGIIH 559
            RMTW+  +KNK E+ + F  F+ MV +Q+++ IQ+ ++DNGGEY ++ M  F QS+GI H
Sbjct: 348  RMTWVMLMKNKWELCQAFQAFHKMVSSQYQRKIQVLQSDNGGEYTSNAMAEFCQSQGIHH 407

Query: 560  QTSCPHTPEQNGVAERKNRILLEITRALIIESKVPKSFWPEALATATYLLNRLPTKILKL 739
            QTSC +TP+QNG+AERKNR LLE+ RA +    VP+ +W EAL +ATYL+NR P+ ++  
Sbjct: 408  QTSCAYTPQQNGLAERKNRQLLEVIRASLFGMNVPREYWGEALKSATYLINRTPSSVIDF 467

Query: 740  KTPIXXXXXXXXXXXXXXXXXXVFGCTVFVHIPKTYRDKLDPCAEKCVFLGYGVNQKGYR 919
            +TP                   VFGC  +VHIPK  R+KLDPCA++C+F+GY   +KGYR
Sbjct: 468  ETPQQKLCRLVSAPTLPNLEPRVFGCVAYVHIPKPLRNKLDPCAKRCIFVGYAEFKKGYR 527

Query: 920  CYNPKTRRMYTTMNCDFLETRFFYT---DQHSSQGEE------SCDVLSWLKCTEGW--- 1063
            CY+P+T+ ++ +++  F E   ++T    + S QGE+      S D+ S ++  E     
Sbjct: 528  CYDPQTKTLHVSLDVSFHEGEAYFTGKAQEPSLQGEKRYMEENSQDIFSEIEEVEERLLQ 587

Query: 1064 -----PTHSTTASEANSQDSPSSNSATQDPPS----PDLVSEVSSPQS---MNSPQHNNS 1207
                 P++  T S  ++  +P+ +    DPP+     D + E +  ++    ++P H ++
Sbjct: 588  QVLFNPSNEGTTSSNSTPAAPADSEGFLDPPNCLNQSDRLMEQTEEEADLPPSTPLHEDT 647

Query: 1208 NDLVXXXXXXXXXXXXL--ISQDHTEPVLEEVQNKYTLPPRANRGVPARRFSPEKISRSS 1381
            +                  I  +H+   +  V+ +Y  P R+N+G+P +++ PE +    
Sbjct: 648  SRETHPQVNHCQEVSLYNPIESNHSSVPIRHVEPRY--PQRSNKGIPRKQYEPE-LRAKV 704

Query: 1382 RYPIANVAEGNLSKEAKAFTASLYSN-NVPSSAQQALESENWKGAMDAEMEALIKSQTWE 1558
            +YPIAN    +   E+ A T +  S   +P + Q+AL+   W+ AM+ EMEAL K+ TWE
Sbjct: 705  KYPIANHVSTHRLSESYALTINQLSTVAIPRTVQEALDDPKWRTAMNEEMEALQKNATWE 764

Query: 1559 KCSLPEGKKPVGCRWLFTIKYKPDGKIERYKARLVAKGYTQTYGIDYSETFSPVANMDTI 1738
               LP+GKK VGCRW++T+K K DG I+RYKARLVAKGYTQ YG+DY ETF+PVA ++TI
Sbjct: 765  IVPLPQGKKTVGCRWIYTVKLKADGGIDRYKARLVAKGYTQKYGVDYQETFAPVAKINTI 824

Query: 1739 RVLFSIAANKDWPLYQFDVKNAFLHGELKEEVYMEAPPGFSHEF-KPGEVCRLKKSLYGL 1915
            R+L S+AA  DWPL Q+DVKNAFLHG+L+EEVYM+ PPG      + G+VCRLKKSLYGL
Sbjct: 825  RILMSLAATYDWPLQQYDVKNAFLHGDLEEEVYMDMPPGSQCRLSEVGKVCRLKKSLYGL 884

Query: 1916 KQSPRAWFGRFTLAMKKYGFKQSNSDHTLFLKRNRDKVTCLIIYVDDMIITGNDEEEIKK 2095
            KQSPRAWFGRFT AMK +G++QSNSDHTLF++R   K+T LI+YVDDM++TG+D  E K 
Sbjct: 885  KQSPRAWFGRFTKAMKAFGYRQSNSDHTLFIRRKAGKLTVLIVYVDDMVVTGDDPVERKA 944

Query: 2096 LKTELFNEFEMKDLGRLKYFLGIEVLRSQHGIFICQKKYILDLLAETGMM 2245
            L+  L  EFEMKDLG+LKYFLGIEV RS+ GI + Q+KY+LDLL +TGM+
Sbjct: 945  LQDYLATEFEMKDLGKLKYFLGIEVARSKEGISLSQRKYVLDLLTDTGML 994


>gb|PRQ55789.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1127

 Score =  671 bits (1730), Expect = 0.0
 Identities = 359/758 (47%), Positives = 470/758 (62%), Gaps = 49/758 (6%)
 Frame = +2

Query: 119  EAWLWHRRLGHPSASYLRILFPALFP--SNKPISCETCILAKSHRQSFKHNNTRVETPFS 292
            E WLWHRRLGHPS   ++   P+LF   S+  + CETC LAKSHR S+  +      PF 
Sbjct: 126  EVWLWHRRLGHPSFRVMKKSMPSLFLGISDSSLHCETCALAKSHRSSYPSSFHSSTMPFE 185

Query: 293  LVHSDVWGPAPVIGGQQLRFYVIFVDDCTRMTWIYFLKNKSEVFEKFTTFYTMVHTQFKK 472
            L+HSDVWGP+       +R++V+F+DD TR++W+  LK+K  VF  F  F+++V TQ+  
Sbjct: 186  LIHSDVWGPSKHSTLSGMRYFVLFIDDFTRLSWVVLLKSKDSVFSAFRAFHSLVRTQYDA 245

Query: 473  SIQICRTDNGGEYVNSQMKFFFQSKGIIHQTSCPHTPEQNGVAERKNRILLEITRALIIE 652
             +++ R+DNGGE+VN     +FQ  GIIHQTSCP TPEQNGV+ERKNR LL++ R+L++ 
Sbjct: 246  HVKVFRSDNGGEFVNHSFHEYFQHHGIIHQTSCPQTPEQNGVSERKNRHLLDMARSLLLS 305

Query: 653  SKVPKSFWPEALATATYLLNRLPTKILKLKTPIXXXXXXXXXXXXXXXXXXVFGCTVFVH 832
            + +PK  W EA+  A++L+NRLP+  L+ + P+                  VFGC  +VH
Sbjct: 306  ANMPKYLWGEAVLCASHLINRLPSAPLQGRVPLEVLSNYVSIPSSNTLPARVFGCVAYVH 365

Query: 833  IPKTYRDKLDPCAEKCVFLGYGVNQKGYRCYNPKTRRMYTTMN-------CDFL------ 973
            + K  R KLD  A KCVF+GYG +QKGY+CY+P++++ Y TM+       C FL      
Sbjct: 366  LYKNQRSKLDARALKCVFVGYGSHQKGYKCYHPQSQKFYVTMDVSFREDACYFLPPVTPR 425

Query: 974  --ETRFFYTDQHSSQGEESCDVLSWLKCTEGWPTHSTTASEANSQDSPSSNSATQDPPSP 1147
              E  ++Y D  + Q E      S L+C       +    E  S   PSS   T++  + 
Sbjct: 426  QGERSYYYEDLFNGQDESLESEFSRLECLG-----TELEKEGRSSTDPSSELETENRENM 480

Query: 1148 DLVSE----------------------VSSPQSMNSPQH-----NNSN----DLVXXXXX 1234
            DLV E                      VS P S N  Q      NNS+            
Sbjct: 481  DLVGEEALGNVLPTGQPDQSDQSAGEIVSDPVSDNVLQSSDGVLNNSSFSPSPSAVSPAQ 540

Query: 1235 XXXXXXXLISQDHTEPVLEEVQNKYTLPPRANRGVPARRFSPEKISRSSRYPIAN-VAEG 1411
                    +S  ++  V   V  K  LP R+ RG P + + P  +S  ++YP+A  V+  
Sbjct: 541  SSPEVCPNLSLSNSSSVSGSVPTKI-LPSRSTRGQPPKHYEPT-LSAKAKYPVAKYVSTH 598

Query: 1412 NLSKEAKAFTASLYSNNVPSSAQQALESENWKGAMDAEMEALIKSQTWEKCSLPEGKKPV 1591
             LSK   AF   L S ++PS  Q A++ E W  AM  EM+AL K+ TWE  SLP GKK V
Sbjct: 599  RLSKPYAAFVNQLSSVSLPSKVQDAMKDEKWMKAMTVEMDALEKNCTWELVSLPPGKKTV 658

Query: 1592 GCRWLFTIKYKPDGKIERYKARLVAKGYTQTYGIDYSETFSPVANMDTIRVLFSIAANKD 1771
            GCRW++T+K+  DG ++RYKARLVAKGYTQ YG+DY ETF+PVA ++TIRVL S+AAN D
Sbjct: 659  GCRWVYTVKHNSDGSVDRYKARLVAKGYTQKYGVDYDETFAPVAKINTIRVLLSLAANLD 718

Query: 1772 WPLYQFDVKNAFLHGELKEEVYMEAPPGFSHEFKPGEVCRLKKSLYGLKQSPRAWFGRFT 1951
            WPL QFDVKNAFLHG+L EEVYM+ PPG+        VC+LKKSLYGLKQSPRAWFGRFT
Sbjct: 719  WPLQQFDVKNAFLHGDLHEEVYMDLPPGYGTSTGEQVVCKLKKSLYGLKQSPRAWFGRFT 778

Query: 1952 LAMKKYGFKQSNSDHTLFLKRNRDKVTCLIIYVDDMIITGNDEEEIKKLKTELFNEFEMK 2131
              MKK G++QSNSDHTLFLK    KVT LIIYVDDM++TG+D EEI++L+ +L +EFEMK
Sbjct: 779  KFMKKIGYRQSNSDHTLFLKHRCGKVTALIIYVDDMVVTGDDIEEIQRLQGQLSSEFEMK 838

Query: 2132 DLGRLKYFLGIEVLRSQHGIFICQKKYILDLLAETGMM 2245
            DLG LKYFLGIEV R +  I + Q+KY+LDLLAETGM+
Sbjct: 839  DLGNLKYFLGIEVARGKDCIVLSQRKYVLDLLAETGML 876