BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00028127
         (2343 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_021969087.1| DNA-directed RNA polymerase IV subunit 1 iso...  1284   0.0  
ref|XP_023772117.1| DNA-directed RNA polymerase IV subunit 1 iso...  1259   0.0  
ref|XP_023772113.1| DNA-directed RNA polymerase IV subunit 1 iso...  1259   0.0  
gb|PLY79057.1| hypothetical protein LSAT_3X5900 [Lactuca sativa]     1259   0.0  
ref|XP_021969088.1| DNA-directed RNA polymerase IV subunit 1 iso...  1254   0.0  
gb|KVH95462.1| Aspartate decarboxylase-like domain-containing pr...  1163   0.0  
ref|XP_022736884.1| DNA-directed RNA polymerase IV subunit 1 iso...   810   0.0  
ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV su...   793   0.0  
ref|XP_021290975.1| DNA-directed RNA polymerase IV subunit 1 iso...   788   0.0  
ref|XP_016717097.1| PREDICTED: DNA-directed RNA polymerase IV su...   796   0.0  
ref|XP_016713417.1| PREDICTED: DNA-directed RNA polymerase IV su...   795   0.0  
ref|XP_019231702.1| PREDICTED: DNA-directed RNA polymerase IV su...   794   0.0  
ref|XP_017626687.1| PREDICTED: DNA-directed RNA polymerase IV su...   795   0.0  
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r...   793   0.0  
ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV su...   793   0.0  
ref|XP_017973942.1| PREDICTED: DNA-directed RNA polymerase IV su...   784   0.0  
ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV su...   790   0.0  
gb|PHU28344.1| hypothetical protein BC332_00437 [Capsicum chinense]   790   0.0  
ref|XP_016567800.1| PREDICTED: DNA-directed RNA polymerase IV su...   790   0.0  
ref|XP_016567789.1| PREDICTED: DNA-directed RNA polymerase IV su...   790   0.0  

>ref|XP_021969087.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Helianthus
            annuus]
 gb|OTG21853.1| putative nuclear RNA polymerase D1A [Helianthus annuus]
          Length = 1439

 Score = 1284 bits (3323), Expect = 0.0
 Identities = 631/781 (80%), Positives = 691/781 (88%), Gaps = 1/781 (0%)
 Frame = +3

Query: 3    IQASKICKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKLISGKSLPHDYWDFV 182
            +Q  K+CKYCD+++KD YP MKFKVS+KDVFGK+AI VEI   +KL+S KSLPHDYW+FV
Sbjct: 118  VQTPKVCKYCDKTFKDIYPPMKFKVSTKDVFGKTAIIVEIKGVKKLVSDKSLPHDYWNFV 177

Query: 183  HEDSQQEEAFSSFSRKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRVA 362
              D QQ+  FS+F RKVLTH QVYQILKDV+P+FLKGSL KKNKIF+Q+FPLTPNCHRVA
Sbjct: 178  PNDPQQDATFSAFDRKVLTHVQVYQILKDVDPTFLKGSLGKKNKIFLQSFPLTPNCHRVA 237

Query: 363  EFGQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRDPDSTEDNPSK 542
            EFGQNLTFDERTRAYRKMV FRGTANELS CV +CIKLSKIRAEKPT+RDPD+ +DNP+K
Sbjct: 238  EFGQNLTFDERTRAYRKMVGFRGTANELSACVLECIKLSKIRAEKPTLRDPDA-DDNPAK 296

Query: 543  MHGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLVSEQLNSLNWERIN 722
            MHGLKYMKEVSLGKRTDFCFR+VCVGDPYIKLDEIGVP ++AETMLVSEQLNS NWE+IN
Sbjct: 297  MHGLKYMKEVSLGKRTDFCFRMVCVGDPYIKLDEIGVPHEIAETMLVSEQLNSFNWEKIN 356

Query: 723  ASCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLVNRPPSIHPHSLI 902
            ASCGLRILQ+GE F+RRRG LVPVRYGDQLRIGDTVYRPL DGD+VL+NRPPSIH HSLI
Sbjct: 357  ASCGLRILQRGEIFVRRRGRLVPVRYGDQLRIGDTVYRPLADGDVVLINRPPSIHSHSLI 416

Query: 903  ALRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELRELVSLENQLVDKQ 1082
            ALRVKVLP++CVLS NPL+C P RGDFDGDSLHGYIPQSLESR ELRELV+LENQLVDKQ
Sbjct: 417  ALRVKVLPVNCVLSVNPLICSPLRGDFDGDSLHGYIPQSLESRVELRELVTLENQLVDKQ 476

Query: 1083 SGKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPAVMGS-SCLWTGRQ 1259
            SGK+L+SLSHDSLT AHLMLEDGVFFNR QLQQLQMFC RQ+L+LPAVM     LWTGRQ
Sbjct: 477  SGKSLLSLSHDSLTAAHLMLEDGVFFNRSQLQQLQMFCPRQQLQLPAVMKKFKHLWTGRQ 536

Query: 1260 LFSLVLDKDFDANVAETQIKNGEFVSLLNPSACLQAGDDNIYSYLIRNFEGDEVLEFLHS 1439
            LFSLVLD +FD +V  TQIKNGEFVS LNPS+CLQ GD+NIY YLI+NF GD+VLEFLHS
Sbjct: 537  LFSLVLDNEFDLDVGGTQIKNGEFVSSLNPSSCLQEGDENIYGYLIKNFSGDKVLEFLHS 596

Query: 1440 AQELMIEWLSSRGFSVXXXXXXXXXXXKHNMNDEVLYGLYEAERQAHGQLLMVDGHQDFL 1619
            AQEL+IEW+S RGFSV           K NMNDEV+YGL EAERQAHGQLLMVDGHQDFL
Sbjct: 597  AQELLIEWVSMRGFSVSLLDLYLSSDSKRNMNDEVVYGLREAERQAHGQLLMVDGHQDFL 656

Query: 1620 TGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXFKQVFRDVQNLIYSYATRENS 1799
            TG+LTGN    EGYS L SDKMC+ QQT           FK+VFRD+Q+LIYSY ++ENS
Sbjct: 657  TGNLTGN----EGYSELQSDKMCHDQQTLAALSRASAAAFKEVFRDLQSLIYSYVSKENS 712

Query: 1800 FLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREFSCVSWNDHKSADSSFSSGVD 1979
            F+SMLKAGSKGNMLKF+QHSMCVGYQHSLVPLSF+FPREFSCVSWN+HK AD SF SGVD
Sbjct: 713  FVSMLKAGSKGNMLKFVQHSMCVGYQHSLVPLSFHFPREFSCVSWNNHKRADLSFPSGVD 772

Query: 1980 RYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFGGHADISGTLFRKLMFFMRDLYIAYDG 2159
            RYVPYGVIKSSFLSGLNP E  VHSVTNRDASFGGHADISGTLFRKLMFFMRDLYI YDG
Sbjct: 773  RYVPYGVIKSSFLSGLNPFEFLVHSVTNRDASFGGHADISGTLFRKLMFFMRDLYIGYDG 832

Query: 2160 TVRNCYGNQLVQFSYNSKNAPGQSKSLLDKAECGAPVGSLAACAISEAAYGALDQPVSAL 2339
            TVRNCYGNQLVQF+YNS+NAPG+SKSLL K ECGA VGSLAACAISEAAYGALDQPVSAL
Sbjct: 833  TVRNCYGNQLVQFTYNSENAPGESKSLLAKEECGAAVGSLAACAISEAAYGALDQPVSAL 892

Query: 2340 E 2342
            E
Sbjct: 893  E 893


>ref|XP_023772117.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Lactuca sativa]
          Length = 1326

 Score = 1259 bits (3259), Expect = 0.0
 Identities = 625/790 (79%), Positives = 686/790 (86%), Gaps = 10/790 (1%)
 Frame = +3

Query: 3    IQASKICKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKLISGKSLPHDYWDFV 182
            +Q  KICKYCDR ++D YP MKFKVS KDVFGK+AI VE  +  KLISGKSLP DYWDFV
Sbjct: 5    VQMPKICKYCDRGFRDVYPPMKFKVSMKDVFGKTAIVVE--SSRKLISGKSLPPDYWDFV 62

Query: 183  HEDSQQEEAFSSFSRKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRVA 362
              D QQE++FSSF+R+VLTHAQVYQILKDV PSFLKGSL KKNKIF+Q+FPLTPNCHRVA
Sbjct: 63   PSDPQQEDSFSSFNRRVLTHAQVYQILKDVNPSFLKGSLGKKNKIFLQSFPLTPNCHRVA 122

Query: 363  EFGQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIR--DPDSTEDNP 536
            EFGQNLTFDERTRAYRKM+ FRGTANELS CV +CIKLSKIRAEKP+ R     + +DNP
Sbjct: 123  EFGQNLTFDERTRAYRKMIGFRGTANELSACVIECIKLSKIRAEKPSFRMNTNGNNDDNP 182

Query: 537  SKMHGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLVSEQLNSLNWER 716
            SKMHGLKY+KEVSLGKRTDFCFR+VCVGDPYIKL+EIGVP  +AETMLVSEQLNSLNWE+
Sbjct: 183  SKMHGLKYIKEVSLGKRTDFCFRMVCVGDPYIKLNEIGVPHHIAETMLVSEQLNSLNWEK 242

Query: 717  INASCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLVNRPPSIHPHS 896
            INASCGLRILQ+GETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVL+NRPPSIH HS
Sbjct: 243  INASCGLRILQRGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLINRPPSIHSHS 302

Query: 897  LIALRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELRELVSLENQLVD 1076
            LIALRVKVLPI CVLS NPL+C P RGDFDGDSLHGYIPQSLESR EL ELVSLE Q+VD
Sbjct: 303  LIALRVKVLPIDCVLSINPLICSPLRGDFDGDSLHGYIPQSLESRVELAELVSLEKQMVD 362

Query: 1077 KQSGKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPAVMG-------- 1232
            KQSGKNL+SLSHDSLT AHLMLEDGVFFNRPQLQQLQMFC  QK++LPA+M         
Sbjct: 363  KQSGKNLLSLSHDSLTAAHLMLEDGVFFNRPQLQQLQMFCANQKIKLPAIMKKLKHSQMF 422

Query: 1233 SSCLWTGRQLFSLVLDKDFDANVAETQIKNGEFVSLLNPSACLQAGDDNIYSYLIRNFEG 1412
             SCLWTGRQLFSLVLDKDFD  V  T+IK GEFVS+LNPS+CLQ G++N+YSYLI+N+EG
Sbjct: 423  KSCLWTGRQLFSLVLDKDFDVGVNGTEIKKGEFVSVLNPSSCLQEGEENLYSYLIKNYEG 482

Query: 1413 DEVLEFLHSAQELMIEWLSSRGFSVXXXXXXXXXXXKHNMNDEVLYGLYEAERQAHGQLL 1592
             EVLEFLHS QEL+IEWLS RGFSV           + NMNDEVLYGL EAERQAHGQLL
Sbjct: 483  KEVLEFLHSFQELLIEWLSMRGFSVSLLDLYLSSDSQTNMNDEVLYGLLEAERQAHGQLL 542

Query: 1593 MVDGHQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXFKQVFRDVQNLI 1772
            MVD HQDF    LTGN+ + E Y+ LDS+K+C+ QQT           FK+VFRD+QNLI
Sbjct: 543  MVDPHQDF----LTGNLPENEAYNELDSNKLCHDQQTSAALSRASASAFKEVFRDIQNLI 598

Query: 1773 YSYATRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREFSCVSWNDHKSA 1952
            Y+YAT+ENSFLSMLKAGSKGNMLKF+QHSMCVGYQHSLVPLSF+FPR+FSC+SWNDHK A
Sbjct: 599  YNYATKENSFLSMLKAGSKGNMLKFVQHSMCVGYQHSLVPLSFHFPRDFSCISWNDHKRA 658

Query: 1953 DSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFGGHADISGTLFRKLMFFM 2132
             SSF  G+DRYVPYGVIKSSFLSGLNP+ELFVHSVTNRDASFGGHADISGTLFRKLMFFM
Sbjct: 659  VSSFPLGIDRYVPYGVIKSSFLSGLNPLELFVHSVTNRDASFGGHADISGTLFRKLMFFM 718

Query: 2133 RDLYIAYDGTVRNCYGNQLVQFSYNSKNAPGQSKSLLDKAECGAPVGSLAACAISEAAYG 2312
            RD+YI YDGTVR+CYGNQLVQFSY      GQS+SLL++AECGAPVGSLAACAISEAAYG
Sbjct: 719  RDIYIGYDGTVRSCYGNQLVQFSY------GQSESLLEEAECGAPVGSLAACAISEAAYG 772

Query: 2313 ALDQPVSALE 2342
            ALDQP+SALE
Sbjct: 773  ALDQPISALE 782


>ref|XP_023772113.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Lactuca sativa]
 ref|XP_023772114.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Lactuca sativa]
 ref|XP_023772115.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Lactuca sativa]
 ref|XP_023772116.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Lactuca sativa]
          Length = 1439

 Score = 1259 bits (3259), Expect = 0.0
 Identities = 625/790 (79%), Positives = 686/790 (86%), Gaps = 10/790 (1%)
 Frame = +3

Query: 3    IQASKICKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKLISGKSLPHDYWDFV 182
            +Q  KICKYCDR ++D YP MKFKVS KDVFGK+AI VE  +  KLISGKSLP DYWDFV
Sbjct: 118  VQMPKICKYCDRGFRDVYPPMKFKVSMKDVFGKTAIVVE--SSRKLISGKSLPPDYWDFV 175

Query: 183  HEDSQQEEAFSSFSRKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRVA 362
              D QQE++FSSF+R+VLTHAQVYQILKDV PSFLKGSL KKNKIF+Q+FPLTPNCHRVA
Sbjct: 176  PSDPQQEDSFSSFNRRVLTHAQVYQILKDVNPSFLKGSLGKKNKIFLQSFPLTPNCHRVA 235

Query: 363  EFGQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIR--DPDSTEDNP 536
            EFGQNLTFDERTRAYRKM+ FRGTANELS CV +CIKLSKIRAEKP+ R     + +DNP
Sbjct: 236  EFGQNLTFDERTRAYRKMIGFRGTANELSACVIECIKLSKIRAEKPSFRMNTNGNNDDNP 295

Query: 537  SKMHGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLVSEQLNSLNWER 716
            SKMHGLKY+KEVSLGKRTDFCFR+VCVGDPYIKL+EIGVP  +AETMLVSEQLNSLNWE+
Sbjct: 296  SKMHGLKYIKEVSLGKRTDFCFRMVCVGDPYIKLNEIGVPHHIAETMLVSEQLNSLNWEK 355

Query: 717  INASCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLVNRPPSIHPHS 896
            INASCGLRILQ+GETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVL+NRPPSIH HS
Sbjct: 356  INASCGLRILQRGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLINRPPSIHSHS 415

Query: 897  LIALRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELRELVSLENQLVD 1076
            LIALRVKVLPI CVLS NPL+C P RGDFDGDSLHGYIPQSLESR EL ELVSLE Q+VD
Sbjct: 416  LIALRVKVLPIDCVLSINPLICSPLRGDFDGDSLHGYIPQSLESRVELAELVSLEKQMVD 475

Query: 1077 KQSGKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPAVMG-------- 1232
            KQSGKNL+SLSHDSLT AHLMLEDGVFFNRPQLQQLQMFC  QK++LPA+M         
Sbjct: 476  KQSGKNLLSLSHDSLTAAHLMLEDGVFFNRPQLQQLQMFCANQKIKLPAIMKKLKHSQMF 535

Query: 1233 SSCLWTGRQLFSLVLDKDFDANVAETQIKNGEFVSLLNPSACLQAGDDNIYSYLIRNFEG 1412
             SCLWTGRQLFSLVLDKDFD  V  T+IK GEFVS+LNPS+CLQ G++N+YSYLI+N+EG
Sbjct: 536  KSCLWTGRQLFSLVLDKDFDVGVNGTEIKKGEFVSVLNPSSCLQEGEENLYSYLIKNYEG 595

Query: 1413 DEVLEFLHSAQELMIEWLSSRGFSVXXXXXXXXXXXKHNMNDEVLYGLYEAERQAHGQLL 1592
             EVLEFLHS QEL+IEWLS RGFSV           + NMNDEVLYGL EAERQAHGQLL
Sbjct: 596  KEVLEFLHSFQELLIEWLSMRGFSVSLLDLYLSSDSQTNMNDEVLYGLLEAERQAHGQLL 655

Query: 1593 MVDGHQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXFKQVFRDVQNLI 1772
            MVD HQDF    LTGN+ + E Y+ LDS+K+C+ QQT           FK+VFRD+QNLI
Sbjct: 656  MVDPHQDF----LTGNLPENEAYNELDSNKLCHDQQTSAALSRASASAFKEVFRDIQNLI 711

Query: 1773 YSYATRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREFSCVSWNDHKSA 1952
            Y+YAT+ENSFLSMLKAGSKGNMLKF+QHSMCVGYQHSLVPLSF+FPR+FSC+SWNDHK A
Sbjct: 712  YNYATKENSFLSMLKAGSKGNMLKFVQHSMCVGYQHSLVPLSFHFPRDFSCISWNDHKRA 771

Query: 1953 DSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFGGHADISGTLFRKLMFFM 2132
             SSF  G+DRYVPYGVIKSSFLSGLNP+ELFVHSVTNRDASFGGHADISGTLFRKLMFFM
Sbjct: 772  VSSFPLGIDRYVPYGVIKSSFLSGLNPLELFVHSVTNRDASFGGHADISGTLFRKLMFFM 831

Query: 2133 RDLYIAYDGTVRNCYGNQLVQFSYNSKNAPGQSKSLLDKAECGAPVGSLAACAISEAAYG 2312
            RD+YI YDGTVR+CYGNQLVQFSY      GQS+SLL++AECGAPVGSLAACAISEAAYG
Sbjct: 832  RDIYIGYDGTVRSCYGNQLVQFSY------GQSESLLEEAECGAPVGSLAACAISEAAYG 885

Query: 2313 ALDQPVSALE 2342
            ALDQP+SALE
Sbjct: 886  ALDQPISALE 895


>gb|PLY79057.1| hypothetical protein LSAT_3X5900 [Lactuca sativa]
          Length = 1421

 Score = 1259 bits (3259), Expect = 0.0
 Identities = 625/790 (79%), Positives = 686/790 (86%), Gaps = 10/790 (1%)
 Frame = +3

Query: 3    IQASKICKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKLISGKSLPHDYWDFV 182
            +Q  KICKYCDR ++D YP MKFKVS KDVFGK+AI VE  +  KLISGKSLP DYWDFV
Sbjct: 118  VQMPKICKYCDRGFRDVYPPMKFKVSMKDVFGKTAIVVE--SSRKLISGKSLPPDYWDFV 175

Query: 183  HEDSQQEEAFSSFSRKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRVA 362
              D QQE++FSSF+R+VLTHAQVYQILKDV PSFLKGSL KKNKIF+Q+FPLTPNCHRVA
Sbjct: 176  PSDPQQEDSFSSFNRRVLTHAQVYQILKDVNPSFLKGSLGKKNKIFLQSFPLTPNCHRVA 235

Query: 363  EFGQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIR--DPDSTEDNP 536
            EFGQNLTFDERTRAYRKM+ FRGTANELS CV +CIKLSKIRAEKP+ R     + +DNP
Sbjct: 236  EFGQNLTFDERTRAYRKMIGFRGTANELSACVIECIKLSKIRAEKPSFRMNTNGNNDDNP 295

Query: 537  SKMHGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLVSEQLNSLNWER 716
            SKMHGLKY+KEVSLGKRTDFCFR+VCVGDPYIKL+EIGVP  +AETMLVSEQLNSLNWE+
Sbjct: 296  SKMHGLKYIKEVSLGKRTDFCFRMVCVGDPYIKLNEIGVPHHIAETMLVSEQLNSLNWEK 355

Query: 717  INASCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLVNRPPSIHPHS 896
            INASCGLRILQ+GETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVL+NRPPSIH HS
Sbjct: 356  INASCGLRILQRGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLINRPPSIHSHS 415

Query: 897  LIALRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELRELVSLENQLVD 1076
            LIALRVKVLPI CVLS NPL+C P RGDFDGDSLHGYIPQSLESR EL ELVSLE Q+VD
Sbjct: 416  LIALRVKVLPIDCVLSINPLICSPLRGDFDGDSLHGYIPQSLESRVELAELVSLEKQMVD 475

Query: 1077 KQSGKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPAVMG-------- 1232
            KQSGKNL+SLSHDSLT AHLMLEDGVFFNRPQLQQLQMFC  QK++LPA+M         
Sbjct: 476  KQSGKNLLSLSHDSLTAAHLMLEDGVFFNRPQLQQLQMFCANQKIKLPAIMKKLKHSQMF 535

Query: 1233 SSCLWTGRQLFSLVLDKDFDANVAETQIKNGEFVSLLNPSACLQAGDDNIYSYLIRNFEG 1412
             SCLWTGRQLFSLVLDKDFD  V  T+IK GEFVS+LNPS+CLQ G++N+YSYLI+N+EG
Sbjct: 536  KSCLWTGRQLFSLVLDKDFDVGVNGTEIKKGEFVSVLNPSSCLQEGEENLYSYLIKNYEG 595

Query: 1413 DEVLEFLHSAQELMIEWLSSRGFSVXXXXXXXXXXXKHNMNDEVLYGLYEAERQAHGQLL 1592
             EVLEFLHS QEL+IEWLS RGFSV           + NMNDEVLYGL EAERQAHGQLL
Sbjct: 596  KEVLEFLHSFQELLIEWLSMRGFSVSLLDLYLSSDSQTNMNDEVLYGLLEAERQAHGQLL 655

Query: 1593 MVDGHQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXFKQVFRDVQNLI 1772
            MVD HQDF    LTGN+ + E Y+ LDS+K+C+ QQT           FK+VFRD+QNLI
Sbjct: 656  MVDPHQDF----LTGNLPENEAYNELDSNKLCHDQQTSAALSRASASAFKEVFRDIQNLI 711

Query: 1773 YSYATRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREFSCVSWNDHKSA 1952
            Y+YAT+ENSFLSMLKAGSKGNMLKF+QHSMCVGYQHSLVPLSF+FPR+FSC+SWNDHK A
Sbjct: 712  YNYATKENSFLSMLKAGSKGNMLKFVQHSMCVGYQHSLVPLSFHFPRDFSCISWNDHKRA 771

Query: 1953 DSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFGGHADISGTLFRKLMFFM 2132
             SSF  G+DRYVPYGVIKSSFLSGLNP+ELFVHSVTNRDASFGGHADISGTLFRKLMFFM
Sbjct: 772  VSSFPLGIDRYVPYGVIKSSFLSGLNPLELFVHSVTNRDASFGGHADISGTLFRKLMFFM 831

Query: 2133 RDLYIAYDGTVRNCYGNQLVQFSYNSKNAPGQSKSLLDKAECGAPVGSLAACAISEAAYG 2312
            RD+YI YDGTVR+CYGNQLVQFSY      GQS+SLL++AECGAPVGSLAACAISEAAYG
Sbjct: 832  RDIYIGYDGTVRSCYGNQLVQFSY------GQSESLLEEAECGAPVGSLAACAISEAAYG 885

Query: 2313 ALDQPVSALE 2342
            ALDQP+SALE
Sbjct: 886  ALDQPISALE 895


>ref|XP_021969088.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Helianthus
            annuus]
          Length = 1302

 Score = 1254 bits (3245), Expect = 0.0
 Identities = 620/761 (81%), Positives = 675/761 (88%), Gaps = 1/761 (0%)
 Frame = +3

Query: 63   MKFKVSSKDVFGKSAISVEIVNPEKLISGKSLPHDYWDFVHEDSQQEEAFSSFSRKVLTH 242
            MKFKVS+KDVFGK+AI VEI   +KL+S KSLPHDYW+FV  D QQ+  FS+F RKVLTH
Sbjct: 1    MKFKVSTKDVFGKTAIIVEIKGVKKLVSDKSLPHDYWNFVPNDPQQDATFSAFDRKVLTH 60

Query: 243  AQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRVAEFGQNLTFDERTRAYRKMVA 422
             QVYQILKDV+P+FLKGSL KKNKIF+Q+FPLTPNCHRVAEFGQNLTFDERTRAYRKMV 
Sbjct: 61   VQVYQILKDVDPTFLKGSLGKKNKIFLQSFPLTPNCHRVAEFGQNLTFDERTRAYRKMVG 120

Query: 423  FRGTANELSTCVTDCIKLSKIRAEKPTIRDPDSTEDNPSKMHGLKYMKEVSLGKRTDFCF 602
            FRGTANELS CV +CIKLSKIRAEKPT+RDPD+ +DNP+KMHGLKYMKEVSLGKRTDFCF
Sbjct: 121  FRGTANELSACVLECIKLSKIRAEKPTLRDPDA-DDNPAKMHGLKYMKEVSLGKRTDFCF 179

Query: 603  RLVCVGDPYIKLDEIGVPRDLAETMLVSEQLNSLNWERINASCGLRILQKGETFIRRRGG 782
            R+VCVGDPYIKLDEIGVP ++AETMLVSEQLNS NWE+INASCGLRILQ+GE F+RRRG 
Sbjct: 180  RMVCVGDPYIKLDEIGVPHEIAETMLVSEQLNSFNWEKINASCGLRILQRGEIFVRRRGR 239

Query: 783  LVPVRYGDQLRIGDTVYRPLHDGDIVLVNRPPSIHPHSLIALRVKVLPISCVLSYNPLVC 962
            LVPVRYGDQLRIGDTVYRPL DGD+VL+NRPPSIH HSLIALRVKVLP++CVLS NPL+C
Sbjct: 240  LVPVRYGDQLRIGDTVYRPLADGDVVLINRPPSIHSHSLIALRVKVLPVNCVLSVNPLIC 299

Query: 963  DPFRGDFDGDSLHGYIPQSLESRAELRELVSLENQLVDKQSGKNLISLSHDSLTGAHLML 1142
             P RGDFDGDSLHGYIPQSLESR ELRELV+LENQLVDKQSGK+L+SLSHDSLT AHLML
Sbjct: 300  SPLRGDFDGDSLHGYIPQSLESRVELRELVTLENQLVDKQSGKSLLSLSHDSLTAAHLML 359

Query: 1143 EDGVFFNRPQLQQLQMFCRRQKLELPAVMGS-SCLWTGRQLFSLVLDKDFDANVAETQIK 1319
            EDGVFFNR QLQQLQMFC RQ+L+LPAVM     LWTGRQLFSLVLD +FD +V  TQIK
Sbjct: 360  EDGVFFNRSQLQQLQMFCPRQQLQLPAVMKKFKHLWTGRQLFSLVLDNEFDLDVGGTQIK 419

Query: 1320 NGEFVSLLNPSACLQAGDDNIYSYLIRNFEGDEVLEFLHSAQELMIEWLSSRGFSVXXXX 1499
            NGEFVS LNPS+CLQ GD+NIY YLI+NF GD+VLEFLHSAQEL+IEW+S RGFSV    
Sbjct: 420  NGEFVSSLNPSSCLQEGDENIYGYLIKNFSGDKVLEFLHSAQELLIEWVSMRGFSVSLLD 479

Query: 1500 XXXXXXXKHNMNDEVLYGLYEAERQAHGQLLMVDGHQDFLTGDLTGNMTKKEGYSGLDSD 1679
                   K NMNDEV+YGL EAERQAHGQLLMVDGHQDFLTG+LTGN    EGYS L SD
Sbjct: 480  LYLSSDSKRNMNDEVVYGLREAERQAHGQLLMVDGHQDFLTGNLTGN----EGYSELQSD 535

Query: 1680 KMCYKQQTXXXXXXXXXXXFKQVFRDVQNLIYSYATRENSFLSMLKAGSKGNMLKFMQHS 1859
            KMC+ QQT           FK+VFRD+Q+LIYSY ++ENSF+SMLKAGSKGNMLKF+QHS
Sbjct: 536  KMCHDQQTLAALSRASAAAFKEVFRDLQSLIYSYVSKENSFVSMLKAGSKGNMLKFVQHS 595

Query: 1860 MCVGYQHSLVPLSFNFPREFSCVSWNDHKSADSSFSSGVDRYVPYGVIKSSFLSGLNPME 2039
            MCVGYQHSLVPLSF+FPREFSCVSWN+HK AD SF SGVDRYVPYGVIKSSFLSGLNP E
Sbjct: 596  MCVGYQHSLVPLSFHFPREFSCVSWNNHKRADLSFPSGVDRYVPYGVIKSSFLSGLNPFE 655

Query: 2040 LFVHSVTNRDASFGGHADISGTLFRKLMFFMRDLYIAYDGTVRNCYGNQLVQFSYNSKNA 2219
              VHSVTNRDASFGGHADISGTLFRKLMFFMRDLYI YDGTVRNCYGNQLVQF+YNS+NA
Sbjct: 656  FLVHSVTNRDASFGGHADISGTLFRKLMFFMRDLYIGYDGTVRNCYGNQLVQFTYNSENA 715

Query: 2220 PGQSKSLLDKAECGAPVGSLAACAISEAAYGALDQPVSALE 2342
            PG+SKSLL K ECGA VGSLAACAISEAAYGALDQPVSALE
Sbjct: 716  PGESKSLLAKEECGAAVGSLAACAISEAAYGALDQPVSALE 756


>gb|KVH95462.1| Aspartate decarboxylase-like domain-containing protein [Cynara
            cardunculus var. scolymus]
          Length = 1394

 Score = 1163 bits (3009), Expect = 0.0
 Identities = 584/794 (73%), Positives = 646/794 (81%), Gaps = 14/794 (1%)
 Frame = +3

Query: 3    IQASKICKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKLISGKSLPHDYWDFV 182
            IQ  K CKYCD+SYKD YP MKFKVS+KDVFGK+AI  E  +  +L S KSLP  YWDFV
Sbjct: 106  IQILKTCKYCDKSYKDVYPPMKFKVSTKDVFGKTAIIAETRSSGRLNSDKSLPPGYWDFV 165

Query: 183  HEDSQQEEAFSSFSRKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRVA 362
              D QQEEAFS+F+R+VLTHAQVY+ILKDV+PSFLKGSL KKNKIF+Q+FPLTPNCHRVA
Sbjct: 166  PNDPQQEEAFSTFNRRVLTHAQVYEILKDVDPSFLKGSLGKKNKIFLQSFPLTPNCHRVA 225

Query: 363  EFGQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRDPDSTEDNPSK 542
            EFGQNLTFDERTRAYRKM+ FRGTANELS+CV DCIKLS                     
Sbjct: 226  EFGQNLTFDERTRAYRKMIGFRGTANELSSCVIDCIKLS--------------------- 264

Query: 543  MHGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLVSEQLNSLNWERIN 722
                                          KLDEIGVP D+AETMLVSEQLNSLNWE+IN
Sbjct: 265  ------------------------------KLDEIGVPHDIAETMLVSEQLNSLNWEKIN 294

Query: 723  ASCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLVNRPPSIHPHSLI 902
            ASCGLRILQ+GETFIRRRGGLVPVRYGD LRIGDTVYRPL+DGDIVL+NRPPSIH HSLI
Sbjct: 295  ASCGLRILQRGETFIRRRGGLVPVRYGDNLRIGDTVYRPLNDGDIVLINRPPSIHSHSLI 354

Query: 903  ALRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELRELVSLENQLVDKQ 1082
            ALRVKVLP++CVLS NPL+C P RGDFDGDSLHGYIPQSLE R ELRELV+LENQLVDKQ
Sbjct: 355  ALRVKVLPVNCVLSINPLICSPLRGDFDGDSLHGYIPQSLECRVELRELVTLENQLVDKQ 414

Query: 1083 SGKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPAVM----------- 1229
            SG+NL+SLSHDSLT AHLMLEDGVFFNRPQLQQLQMFCR Q+LELPA+M           
Sbjct: 415  SGENLLSLSHDSLTAAHLMLEDGVFFNRPQLQQLQMFCRHQQLELPAIMKKSKDSPLELP 474

Query: 1230 ---GSSCLWTGRQLFSLVLDKDFDANVAETQIKNGEFVSLLNPSACLQAGDDNIYSYLIR 1400
                +SC WTGRQLFSL++ KDFD +VA  QIK GEFV LLNPS+CLQA D+N+Y+YLI+
Sbjct: 475  ADMSNSCFWTGRQLFSLLMAKDFDLSVAGAQIKRGEFVGLLNPSSCLQAADENLYNYLIK 534

Query: 1401 NFEGDEVLEFLHSAQELMIEWLSSRGFSVXXXXXXXXXXXKHNMNDEVLYGLYEAERQAH 1580
            NF G+EVLEFLHSAQEL+IEWLS RGFSV           ++NMNDEV YGL EAERQAH
Sbjct: 535  NFRGEEVLEFLHSAQELLIEWLSMRGFSVSLLDLYLSSDAQNNMNDEVFYGLREAERQAH 594

Query: 1581 GQLLMVDGHQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXFKQVFRDV 1760
            GQLLMVD HQDFL+G LT N    EGYS L+S+K+C+ QQT           FK+VFRD+
Sbjct: 595  GQLLMVDDHQDFLSGKLTEN----EGYSELESEKLCHDQQTSAALSRASAAAFKEVFRDL 650

Query: 1761 QNLIYSYATRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREFSCVSWND 1940
            QNLIY+YAT++NSFLSMLKAGSKGNMLKF+QHSMC+GYQHSLVPLSF+FPR+FSCVSWN+
Sbjct: 651  QNLIYNYATKDNSFLSMLKAGSKGNMLKFVQHSMCLGYQHSLVPLSFHFPRQFSCVSWNN 710

Query: 1941 HKSADSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFGGHADISGTLFRKL 2120
            HK A+ SF  GVDRYVPYGVIKSSFL+GLNP+E FVHSVTNRDASFGGHADISGTLFRKL
Sbjct: 711  HKRAELSFPLGVDRYVPYGVIKSSFLAGLNPLEFFVHSVTNRDASFGGHADISGTLFRKL 770

Query: 2121 MFFMRDLYIAYDGTVRNCYGNQLVQFSYNSKNAPGQSKSLLDKAECGAPVGSLAACAISE 2300
            MFFMRD+Y+ YDGTVRNCYGNQLVQFSYNSKNAPGQSKSLL+ AECG PVGSLAACAISE
Sbjct: 771  MFFMRDMYVGYDGTVRNCYGNQLVQFSYNSKNAPGQSKSLLNNAECGEPVGSLAACAISE 830

Query: 2301 AAYGALDQPVSALE 2342
            AAYGALDQP+SALE
Sbjct: 831  AAYGALDQPISALE 844


>ref|XP_022736884.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Durio
            zibethinus]
          Length = 1471

 Score =  810 bits (2092), Expect = 0.0
 Identities = 424/807 (52%), Positives = 555/807 (68%), Gaps = 31/807 (3%)
 Frame = +3

Query: 15   KICKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKLISGK----SLPHDYWDFV 182
            K CKYC R+  D YP M+FK+SSKD+F KSAI VE+     +   K    +LP DYWDF+
Sbjct: 126  KGCKYCVRNSIDWYPPMRFKISSKDLFRKSAILVEVSENSLMKVRKRGRQALPADYWDFI 185

Query: 183  HEDSQQEEAFSSFSRKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRVA 362
             +D QQEE F    R+VL+HAQV+ +LK+V+P F+K  ++  + IF+  FP+TPN HRV 
Sbjct: 186  PKDQQQEEGFMKPGRRVLSHAQVHHLLKEVDPEFIKKFVLNMDSIFLNCFPVTPNSHRVT 245

Query: 363  EF------GQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRDP--- 515
            E        Q L FDERTR Y+K+V FRG ANELS+ V +C+K+SK+  EKP+  DP   
Sbjct: 246  EIMHSSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHLEKPSNEDPALI 305

Query: 516  ---DSTEDNPSKMHGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLVS 686
                  +D+ S M GL+YMK+V LGKR D CFR+V  G+P +KL EIG+P  +AE + ++
Sbjct: 306  VAQKRNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPYHVAERLEIA 365

Query: 687  EQLNSLNWERINASCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLV 866
            EQLN  N ER+   C LRI++KGE  IRR G LV +R+ +QL++GDT+YRPL++GD +L+
Sbjct: 366  EQLNRWNEERLKTCCNLRIIEKGEIRIRREGRLVRIRHNEQLQVGDTIYRPLNNGDTMLI 425

Query: 867  NRPPSIHPHSLIALRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELRE 1046
            NRPPSIH HSLIAL VKVLP+S V+S NPL+C PFRGDFDGD LHGY+PQS+ +R EL E
Sbjct: 426  NRPPSIHQHSLIALSVKVLPVSSVVSINPLICSPFRGDFDGDCLHGYVPQSISTRVELSE 485

Query: 1047 LVSLENQLVDKQSGKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPAV 1226
            LVSL  QL++ QSG+NL+SLSHDSLT A+L+ EDGV  N  ++QQL+MFC      LPA+
Sbjct: 486  LVSLNRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFEMQQLEMFCPNHS-PLPAI 544

Query: 1227 ----MGSSCLWTGRQLFSLVLDKDFDANVA--ETQIKNGEFVSLLNPSACLQAGDDNIYS 1388
                + S  LWTG+QL S++  ++FD   A  +  I+ GEF++    +  L+  D NI+ 
Sbjct: 545  VKAPLMSKPLWTGKQLLSMLFPREFDYVFAPSDVVIRKGEFIASSEGATWLRDADGNIFQ 604

Query: 1389 YLIRNFEGDEVLEFLHSAQELMIEWLSSRGFSV--XXXXXXXXXXXKHNMNDEVLYGLYE 1562
             LI++++G +VL+FL++AQE++ EWLS RG SV             + NM DE+ Y L E
Sbjct: 605  SLIKHYQG-KVLDFLYAAQEVLCEWLSMRGLSVSLLDLYLSSDSNSRKNMMDEIFYALQE 663

Query: 1563 AERQAHGQLLMVDGHQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXFK 1742
             E+  + + LMVD + DFL G       + + +  LD ++MCY++Q            FK
Sbjct: 664  TEQTCNFKQLMVDSYHDFLVGH-----EEIDSFMALDVERMCYEKQRSAALSQASVDSFK 718

Query: 1743 QVFRDVQNLIYSYATRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREFS 1922
            QVFRD+QNL Y YA ++NS L+M KAGSKGN+LK +QHSMC+G QHSLVPLSF FP + S
Sbjct: 719  QVFRDIQNLFYKYANKDNSLLTMFKAGSKGNLLKVVQHSMCLGLQHSLVPLSFRFPHQLS 778

Query: 1923 CVSWNDHKS------ADSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFGG 2084
            C +WN+ KS      AD +F S    Y+PY V++SSF+ GLNP+E FVHSVT+RD+SF  
Sbjct: 779  CAAWNNQKSHGLTLKADDTFES-AKNYIPYAVVESSFVKGLNPLECFVHSVTSRDSSFSD 837

Query: 2085 HADISGTLFRKLMFFMRDLYIAYDGTVRNCYGNQLVQFSYN-SKNAPGQSKSLLDKAECG 2261
            +AD+ GTL R+LMFFMRDL  AYDGTVRN YG+Q+VQF YN  K    Q  SLLD    G
Sbjct: 838  NADLPGTLSRRLMFFMRDLCTAYDGTVRNAYGDQVVQFYYNIDKGTSSQGCSLLDGIG-G 896

Query: 2262 APVGSLAACAISEAAYGALDQPVSALE 2342
             PVGSL+ACAISEAAY ALDQP+S LE
Sbjct: 897  QPVGSLSACAISEAAYSALDQPISLLE 923


>ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
            [Gossypium raimondii]
          Length = 1300

 Score =  793 bits (2049), Expect = 0.0
 Identities = 419/817 (51%), Positives = 549/817 (67%), Gaps = 40/817 (4%)
 Frame = +3

Query: 12   SKICKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKLISGK----SLPHDYWDF 179
            +K CKYC  +  + YP M+FK++SK++F KSAI VE+     +   K    +LP DYWDF
Sbjct: 125  TKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPADYWDF 184

Query: 180  VHEDSQQEEAFSSFSRKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRV 359
            + +D QQEE F    R+VL+HAQV  +LKDV P F+K  + + + IF+  FP+TPN HRV
Sbjct: 185  IPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSHRV 244

Query: 360  AEF------GQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRDP-- 515
             E        Q L FDERTR Y+K+V FRG ANELS+ V +C+K+SK+  EKP+  D   
Sbjct: 245  TEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTEDSAL 304

Query: 516  ----DSTEDNPSKMHGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLV 683
                   +D+ S M GL+YMK+V LGKR D CFR+V  G+P +KL EIG+P  +AE + +
Sbjct: 305  IAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQI 364

Query: 684  SEQLNSLNWERINASCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVL 863
            +EQLN  N ER+   C LRIL+KGE  IRR G LV +R+ +++++GDT+YRPL+DGD VL
Sbjct: 365  AEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGDTVL 424

Query: 864  VNRPPSIHPHSLIALRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELR 1043
            +NRPPSIH HSLIAL VKVLP++ V+S NPL+C PFRGDFDGD LHGY+PQS+ +R EL 
Sbjct: 425  INRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELS 484

Query: 1044 ELVSLENQLVDKQSGKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPA 1223
            ELVSL+ QL++ QSG+NL+SLSHDSLT A+L+ EDGV  N  Q+QQL+MFC      LPA
Sbjct: 485  ELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHS-PLPA 543

Query: 1224 VMG----SSCLWTGRQLFSLVLDKDFDANVAET--QIKNGEFVSLLNPSACLQAGDDNIY 1385
            ++     S+ +WTG+QLFS++   +FD   A +   I NG+ +     S+ L+  D N++
Sbjct: 544  IVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGNLF 603

Query: 1386 SYLIRNFEGDEVLEFLHSAQELMIEWLSSRGFSV--XXXXXXXXXXXKHNMNDEVLYGLY 1559
              LI++++G +VL+FLH+AQE++ EWLS RG SV             + NM DE+ YGL 
Sbjct: 604  QSLIKHYQG-KVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQ 662

Query: 1560 EAERQAHGQLLMVDGHQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXF 1739
            EAE+  + + LMVD  QDF    L GN  +   +  LD ++MCY++Q            F
Sbjct: 663  EAEQTCNFKQLMVDSCQDF----LAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSF 718

Query: 1740 KQVFRDVQNLIYSYATRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREF 1919
            KQVFRD+QNL+Y YA ++NS  +M KAGSKGN+LK +QHSMC+G QHSLVPLSF FP + 
Sbjct: 719  KQVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQL 778

Query: 1920 SCVSWNDHKS------ADSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFG 2081
            SC +WN+ KS       D +  S   +Y+PY V++SSF+ GLNP+E FVHSVT RD SF 
Sbjct: 779  SCAAWNNQKSHILTQKVDDTDES-AKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFS 837

Query: 2082 GHADISGTLFRKLMFFMRDLYIAYDGTVRNCYGNQLVQFSYNSKNAPGQSKSLLDKAEC- 2258
             +AD+ GTL R+LMFFMRDL  AYDGTVRN YG+Q+VQF YN         S  DK    
Sbjct: 838  DNADLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQ 897

Query: 2259 ---------GAPVGSLAACAISEAAYGALDQPVSALE 2342
                     G PVGSL+ACAISEAAY ALDQP+S LE
Sbjct: 898  GSSLPDGIGGQPVGSLSACAISEAAYSALDQPISLLE 934


>ref|XP_021290975.1| DNA-directed RNA polymerase IV subunit 1 isoform X3 [Herrania
            umbratica]
          Length = 1202

 Score =  788 bits (2035), Expect = 0.0
 Identities = 410/819 (50%), Positives = 556/819 (67%), Gaps = 39/819 (4%)
 Frame = +3

Query: 3    IQASKICKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKLISGK----SLPHDY 170
            +   K CKYC  +  D YP M FK+SSKD+F KSAI VE+     +   K    +LP DY
Sbjct: 124  VNRRKGCKYCVGNSIDCYPPMNFKISSKDLFRKSAIIVEVSEKSSMKVRKRGKQALPSDY 183

Query: 171  WDFVHEDSQQEEAFSSFSRKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNC 350
            WDF+ +D QQEE+    +R+VL+H+QV  +LKDV+P F+K  ++  + IF+  FP+TPN 
Sbjct: 184  WDFIPKDEQQEESLIRPNRRVLSHSQVRYLLKDVDPEFIKKFVLSMDSIFLNCFPVTPNS 243

Query: 351  HRVAEF------GQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRD 512
            HRV E       GQ L FD+RTR Y+K+  FRG ANELS  V +C+K+SK+  EKP+  +
Sbjct: 244  HRVTEIMHASSNGQRLIFDQRTRVYKKLADFRGIANELSAHVLECLKISKLHLEKPSNEE 303

Query: 513  P------DSTEDNPSKMHGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAET 674
                      +D+ S M GL+YMK+V LGKR D CFR+V  G+P +KL EIG+P  +AE 
Sbjct: 304  SALVLAQKRNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAER 363

Query: 675  MLVSEQLNSLNWERINASCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGD 854
            + ++EQLN+ N ER+ A C LR+L+KGE  +RR G LV +R+ ++L++GDT++RPL++GD
Sbjct: 364  LQIAEQLNNWNEERLKACCDLRLLEKGEIHVRREGRLVRIRHNEKLQVGDTIFRPLNNGD 423

Query: 855  IVLVNRPPSIHPHSLIALRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRA 1034
            IVL+NRPPSIH HSLIAL VKVLP+  V+S NPL+C PFRGDFDGD LHGY+PQS++SR 
Sbjct: 424  IVLINRPPSIHQHSLIALSVKVLPVRSVVSINPLICSPFRGDFDGDCLHGYVPQSIKSRI 483

Query: 1035 ELRELVSLENQLVDKQSGKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLE 1214
            EL ELVSL  QL++ QSG+NL+SLSHDSLT A+L+ EDGV  N  Q+QQL+MFC      
Sbjct: 484  ELSELVSLNRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHS-P 542

Query: 1215 LPAVMGS----SCLWTGRQLFSLVLDKDFDANVA--ETQIKNGEFVSLLNPSACLQAGDD 1376
             PA++ +    S +WTG+QL S++   +FD +    +  I+NGE +S    S  L+  D 
Sbjct: 543  FPAIVKAPLLGSSVWTGKQLLSMLFPPEFDYDFTPNDVVIRNGELISSSEGSTWLRDADG 602

Query: 1377 NIYSYLIRNFEGDEVLEFLHSAQELMIEWLSSRGFSV--XXXXXXXXXXXKHNMNDEVLY 1550
            N++  LI++++G +VL+FL++AQE++ EWLS RG SV             + NM DE+  
Sbjct: 603  NLFQSLIKHYQG-KVLDFLYAAQEVLCEWLSMRGLSVSLLDLYLSSDSNSQKNMMDEIFC 661

Query: 1551 GLYEAERQAHGQLLMVDGHQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXX 1730
            GL E E+  + + LMVD + DF    L G+  + + +  LD ++MCY++Q          
Sbjct: 662  GLQEIEQTCNFKQLMVDSYHDF----LVGHDEEVDSFMALDVEQMCYEKQRSAALSQASV 717

Query: 1731 XXFKQVFRDVQNLIYSYATRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFP 1910
              FKQVFRD+QNL+Y YA ++NS L+M KAGSKGN+LK +QHS+C+G QHSLVPLSF FP
Sbjct: 718  DSFKQVFRDIQNLLYKYANKDNSLLTMFKAGSKGNLLKLVQHSLCLGLQHSLVPLSFRFP 777

Query: 1911 REFSCVSWNDHKSAD-----SSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDAS 2075
             + SC +WN+ +S          +     Y+PY V++SSF++GLNP+E FVHSVT+RD+S
Sbjct: 778  HQLSCAAWNNQRSHGLTQKVDDIAESAKNYIPYAVVESSFMTGLNPLESFVHSVTSRDSS 837

Query: 2076 FGGHADISGTLFRKLMFFMRDLYIAYDGTVRNCYGNQLVQFSYN-SKNAPGQSK---SLL 2243
            F  +AD+ GTL R+LMFFMRDLY AYDGTVRN YG+Q+VQF Y+  K+A   +     L+
Sbjct: 838  FSDNADLPGTLSRRLMFFMRDLYTAYDGTVRNSYGDQVVQFCYDIDKDASSPTSCAHELI 897

Query: 2244 DKAEC------GAPVGSLAACAISEAAYGALDQPVSALE 2342
             ++        G PVGSL+ACAISEAAY ALDQPVS LE
Sbjct: 898  SESRSIPEGIGGQPVGSLSACAISEAAYSALDQPVSLLE 936


>ref|XP_016717097.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium hirsutum]
 ref|XP_016717098.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium hirsutum]
          Length = 1481

 Score =  796 bits (2056), Expect = 0.0
 Identities = 420/817 (51%), Positives = 550/817 (67%), Gaps = 40/817 (4%)
 Frame = +3

Query: 12   SKICKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKLISGK----SLPHDYWDF 179
            +K CKYC  +  + YP M+FK++SK++F KSAI VE+     +   K    +LP DYWDF
Sbjct: 125  TKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPADYWDF 184

Query: 180  VHEDSQQEEAFSSFSRKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRV 359
            + +D QQEE F    R+VL+HAQV  +LKDV+P F+K  + + + IF+  FP+TPN HRV
Sbjct: 185  IPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVDPEFIKKFISEADSIFLNFFPVTPNSHRV 244

Query: 360  AEF------GQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRDP-- 515
             E        Q L FDERTR Y+K+V FRG ANELS+ V +C+K+SK+  EKP+  D   
Sbjct: 245  TEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTEDSAL 304

Query: 516  ----DSTEDNPSKMHGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLV 683
                   +D+ S M GL+YMK+V LGKR D CFR+V  G+P +KL EIG+P  +AE + +
Sbjct: 305  IAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQI 364

Query: 684  SEQLNSLNWERINASCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVL 863
            +EQLN  N ER+   C LRIL+KGE  IRR G LV +R+ +++++GDT+YRPL+DGD VL
Sbjct: 365  AEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGDTVL 424

Query: 864  VNRPPSIHPHSLIALRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELR 1043
            +NRPPSIH HSLIAL VKVLP++ V+S NPL+C PFRGDFDGD LHGY+PQS+ +R EL 
Sbjct: 425  INRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELS 484

Query: 1044 ELVSLENQLVDKQSGKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPA 1223
            ELVSL+ QL++ QSG+NL+SLSHDSLT A+L+ EDGV  N  Q+QQL+MFC      LPA
Sbjct: 485  ELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHS-PLPA 543

Query: 1224 VMG----SSCLWTGRQLFSLVLDKDFDANVA--ETQIKNGEFVSLLNPSACLQAGDDNIY 1385
            ++     S+ +WTG+QLFS++   +FD   A  +  I NG+ +     S+ L+  D N++
Sbjct: 544  IVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSDVVIHNGDLICSSEGSSWLRDADGNLF 603

Query: 1386 SYLIRNFEGDEVLEFLHSAQELMIEWLSSRGFSV--XXXXXXXXXXXKHNMNDEVLYGLY 1559
              LI++F+G +VL+FLH+AQE++ EWLS RG SV             + NM DE+ YGL 
Sbjct: 604  QSLIKHFQG-KVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQ 662

Query: 1560 EAERQAHGQLLMVDGHQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXF 1739
            EAE+  + + LMVD  QDF    L GN  +   +  LD ++MCY++Q            F
Sbjct: 663  EAEQTCNFKQLMVDSCQDF----LAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSF 718

Query: 1740 KQVFRDVQNLIYSYATRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREF 1919
            KQVFRD+QNL+Y YA ++NS  +M KAGSKGN+LK +QHSMC+G QHSLVPLSF FP + 
Sbjct: 719  KQVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQL 778

Query: 1920 SCVSWNDHKS------ADSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFG 2081
            SC +WN+ KS       D +  S   +Y+PY V++SSF+ GLNP+E FVHSVT RD SF 
Sbjct: 779  SCAAWNNQKSHILTQKVDDTDES-AKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFS 837

Query: 2082 GHADISGTLFRKLMFFMRDLYIAYDGTVRNCYGNQLVQFSYNSKNAPGQSKSLLDKAEC- 2258
             +AD+ GTL R+LMFFMRDL  AYDGTVRN YG+Q+VQF YN         S  DK    
Sbjct: 838  DNADLPGTLSRRLMFFMRDLCTAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQ 897

Query: 2259 ---------GAPVGSLAACAISEAAYGALDQPVSALE 2342
                     G PVGSL+ACAISEAAY ALDQP+S LE
Sbjct: 898  GNSLPDGIGGQPVGSLSACAISEAAYSALDQPISLLE 934


>ref|XP_016713417.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium hirsutum]
 ref|XP_016713418.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium hirsutum]
 ref|XP_016713420.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium hirsutum]
 ref|XP_016713421.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium hirsutum]
          Length = 1481

 Score =  795 bits (2054), Expect = 0.0
 Identities = 418/817 (51%), Positives = 550/817 (67%), Gaps = 40/817 (4%)
 Frame = +3

Query: 12   SKICKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKLISGK----SLPHDYWDF 179
            +K CKYC  +  + YP M+FK++SK++F KSAI VE+     +   K    +LP DYWDF
Sbjct: 125  TKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPADYWDF 184

Query: 180  VHEDSQQEEAFSSFSRKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRV 359
            + +D QQEE F    R+VL+HAQV  +LKDV+P F+K  + + + IF+  FP+TPN HRV
Sbjct: 185  IPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVDPEFIKKFISEADSIFLNFFPVTPNSHRV 244

Query: 360  AEF------GQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRDP-- 515
             E        Q L FDERTR Y+K+V FRG ANELS+ V +C+K+SK+  EKP+  D   
Sbjct: 245  TEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTEDSAL 304

Query: 516  ----DSTEDNPSKMHGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLV 683
                   +D+ S M GL+YMK+V LGKR D CFR+V  G+P +KL EIG+P  +AE + +
Sbjct: 305  IAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQI 364

Query: 684  SEQLNSLNWERINASCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVL 863
            +EQLN  N ER+   C LRIL+KGE  IRR G LV +R+ +++++GDT+YRPL+DGD VL
Sbjct: 365  AEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGDTVL 424

Query: 864  VNRPPSIHPHSLIALRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELR 1043
            +NRPPSIH HSLIAL VKVLP++ V+S NPL+C PFRGDFDGD LHGY+PQS+ +R EL 
Sbjct: 425  INRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELS 484

Query: 1044 ELVSLENQLVDKQSGKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPA 1223
            ELVSL+ QL++ QSG+NL+SLSHDSLT A+L+ EDGV  N  Q+QQL+MFC      LPA
Sbjct: 485  ELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHS-PLPA 543

Query: 1224 VMG----SSCLWTGRQLFSLVLDKDFDANVA--ETQIKNGEFVSLLNPSACLQAGDDNIY 1385
            ++     S+ +WTG+QLFS++   +FD   A  +  I NG+ +     S  L+  D N++
Sbjct: 544  IVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSDVVIHNGDLICSSEGSTWLRDADGNLF 603

Query: 1386 SYLIRNFEGDEVLEFLHSAQELMIEWLSSRGFSV--XXXXXXXXXXXKHNMNDEVLYGLY 1559
              LI++++G ++L+FLH+AQE++ EWLS RG SV             + NM DE+ YGL 
Sbjct: 604  QSLIKHYQG-KILDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQ 662

Query: 1560 EAERQAHGQLLMVDGHQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXF 1739
            EAE+  + + LMVD  QDF    L GN  +   +  LD ++MCY++Q            F
Sbjct: 663  EAEQTCNFKQLMVDSCQDF----LAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSF 718

Query: 1740 KQVFRDVQNLIYSYATRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREF 1919
            KQVFRD+QNL+Y YA ++NS  +M KAGSKGN+LK +QHSMC+G QHSLVPLSF FP + 
Sbjct: 719  KQVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQL 778

Query: 1920 SCVSWNDHKS------ADSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFG 2081
            SC +WN+ KS       D +  S   +Y+PY V++SSF+ GLNP+E FVHSVT RD SF 
Sbjct: 779  SCAAWNNQKSHILTQKVDDTDES-AKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFS 837

Query: 2082 GHADISGTLFRKLMFFMRDLYIAYDGTVRNCYGNQLVQFSYNSKNAPGQSKSLLDKAEC- 2258
             +AD+ GTL R+LMFFMRDL  AYDGTVRN YG+Q+VQF YN+        S  DK    
Sbjct: 838  DNADLPGTLSRRLMFFMRDLCTAYDGTVRNAYGDQVVQFCYNTNKGRFSPTSCPDKLVSQ 897

Query: 2259 ---------GAPVGSLAACAISEAAYGALDQPVSALE 2342
                     G PVGSL+ACAISEAAY ALDQP+S LE
Sbjct: 898  GNSLPDGIGGQPVGSLSACAISEAAYSALDQPISLLE 934


>ref|XP_019231702.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Nicotiana
            attenuata]
 ref|XP_019231703.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Nicotiana
            attenuata]
 gb|OIT28545.1| dna-directed rna polymerase iv subunit 1 [Nicotiana attenuata]
          Length = 1447

 Score =  794 bits (2051), Expect = 0.0
 Identities = 429/790 (54%), Positives = 546/790 (69%), Gaps = 16/790 (2%)
 Frame = +3

Query: 21   CKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKL--ISGKSLPHDYWDFVHEDS 194
            C YCD   +  YP MKFKVS KD+FGK+AI  E V+ +KL   SG SL  DYW F+ +D+
Sbjct: 117  CNYCDGILRG-YPPMKFKVSPKDMFGKTAIIAE-VSEKKLQQTSGGSLASDYWKFIPDDA 174

Query: 195  QQEEAFSSFS-RKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRVAEFG 371
            QQ+ +F+S   +KVLTHAQVY ILKDV+P FL+G   +KN IF+++  LTPN HRV EFG
Sbjct: 175  QQDASFNSSKYKKVLTHAQVYSILKDVDPGFLEGLFRRKNSIFLKSCLLTPNSHRVTEFG 234

Query: 372  QNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRDPDSTEDNPSKMHG 551
            Q++ FDE  R YRK++ FRGTAN+LS CV + IK+SKIRAE+    DP++         G
Sbjct: 235  QHMIFDESNRLYRKLIDFRGTANDLSMCVFNRIKVSKIRAERSLTNDPNAPAT------G 288

Query: 552  LKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLVSEQLNSLNWERINASC 731
            LKY+KE+ L KRT+  FR+V VGDP IKL EIG+P  +AE + ++E L+S NWE++   C
Sbjct: 289  LKYVKELVLAKRTNHAFRMVVVGDPNIKLGEIGIPCHVAEDLHMAEPLSSRNWEKLTDHC 348

Query: 732  GLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLVNRPPSIHPHSLIALR 911
             L ILQKG   +RR G LV +   DQL+ GD +YRPL DGD+VL+NRPPSIH HSLIAL 
Sbjct: 349  DLMILQKGAIHVRRNGVLVRISVMDQLQRGDIIYRPLIDGDVVLINRPPSIHQHSLIALS 408

Query: 912  VKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELRELVSLENQLVDKQSGK 1091
            V++LPI  VLS NPLVC PFRGDFDGD LHGY+PQS++SR EL ELV L  QL+D QSG+
Sbjct: 409  VRILPIISVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNRQLIDGQSGQ 468

Query: 1092 NLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPAVM----GSSCLWTGRQ 1259
            NL+SLSHDSLT AHL+LE+GVF +R Q+QQLQMFC  Q + +PA++     +   WTG+Q
Sbjct: 469  NLLSLSHDSLTAAHLILEEGVFLDRFQMQQLQMFCPHQ-VGMPAIVRAPSRNRSYWTGKQ 527

Query: 1260 LFSLVLDKDFDANVAETQ--IKNGEFVSLLNPSACLQAGDDNIYSYLIRNFEGDEVLEFL 1433
            LFSL L  D D +       I +GE V+    S+ L+   +N++  L+++  GD  L+ L
Sbjct: 528  LFSLFLPSDLDCDFPSNGVCISDGEIVTSSGGSSWLRDASENLFYTLVKHHGGD-TLDLL 586

Query: 1434 HSAQELMIEWLSSRGFSV--XXXXXXXXXXXKHNMNDEVLYGLYEAERQAHGQLLMVDGH 1607
            ++AQ ++ EWLS RG SV             + NM DEV  GL EAER ++ QLLM   +
Sbjct: 587  YAAQAVLCEWLSMRGLSVSLSDLYISSDPYSRENMIDEVFCGLQEAERLSYVQLLMTRYN 646

Query: 1608 QDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXFKQVFRDVQNLIYSYAT 1787
             DFL G L   +++K    G D + M   QQ            FKQVFRD+QNL+Y+YA+
Sbjct: 647  HDFLAGRL--EVSQKA--MGFDLEFMSIMQQMSASLSQASVTAFKQVFRDIQNLVYNYAS 702

Query: 1788 RENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREFSCVSWNDHKS-----A 1952
            +ENSFL+MLKAGSKGN+LK +QHSMC+G Q SLVPLSF  PR+ SC +WN+HK+      
Sbjct: 703  KENSFLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPLSFRMPRQLSCDAWNNHKAHLPFEK 762

Query: 1953 DSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFGGHADISGTLFRKLMFFM 2132
              +       Y+P  V+++SFL+GLNP+E FVHS+T RD+SF GHAD+SGTL RKLMFFM
Sbjct: 763  AHNVPERPGSYIPCAVVENSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFM 822

Query: 2133 RDLYIAYDGTVRNCYGNQLVQFSYNSKNAPGQSKSLLDKAECGAPVGSLAACAISEAAYG 2312
            RDLYI YDGTVRN YGNQ+VQFSY + +    + +    A  G PVGSLAACAISEAAY 
Sbjct: 823  RDLYIGYDGTVRNAYGNQIVQFSYYNADQIASTYNHASHAIGGHPVGSLAACAISEAAYS 882

Query: 2313 ALDQPVSALE 2342
            ALD P+ ALE
Sbjct: 883  ALDLPIGALE 892


>ref|XP_017626687.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Gossypium
            arboreum]
 ref|XP_017626688.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Gossypium
            arboreum]
          Length = 1481

 Score =  795 bits (2052), Expect = 0.0
 Identities = 419/817 (51%), Positives = 549/817 (67%), Gaps = 40/817 (4%)
 Frame = +3

Query: 12   SKICKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKLISGK----SLPHDYWDF 179
            +K CKYC  +  + YP M+FK++SK++F KSAI VE+     +   K    +LP DYWDF
Sbjct: 125  TKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPADYWDF 184

Query: 180  VHEDSQQEEAFSSFSRKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRV 359
            + +D QQEE F    R+VL+HAQV  +LKDV+P F+K  + + + IF+  FP+TPN HRV
Sbjct: 185  IPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVDPEFIKKFISEADSIFLNCFPVTPNSHRV 244

Query: 360  AEF------GQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRDP-- 515
             E        Q L FDERTR Y+K+V FRG ANELS+ V +C+K+SK+  EKP+  D   
Sbjct: 245  TEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTEDSAL 304

Query: 516  ----DSTEDNPSKMHGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLV 683
                   +D+ S M GL+YMK+V LGKR D CFR+V  G+P +KL EIG+P  +AE + +
Sbjct: 305  IAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQI 364

Query: 684  SEQLNSLNWERINASCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVL 863
            +EQLN  N ER+   C LRIL+KGE  IRR   LV +R+ +++++GDT+YRPL+DGD VL
Sbjct: 365  AEQLNRWNEERLKTCCNLRILEKGEIRIRRESKLVRIRHNEKVQVGDTIYRPLNDGDTVL 424

Query: 864  VNRPPSIHPHSLIALRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELR 1043
            +NRPPSIH HSLIAL VKVLP++ V+S NPL+C PFRGDFDGD LHGY+PQS+ +R EL 
Sbjct: 425  INRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELS 484

Query: 1044 ELVSLENQLVDKQSGKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPA 1223
            ELVSL+ QL++ QSG+NL+SLSHDSLT A+L+ EDGV  N  Q+QQL+MFC      LPA
Sbjct: 485  ELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHS-PLPA 543

Query: 1224 VMG----SSCLWTGRQLFSLVLDKDFDANVA--ETQIKNGEFVSLLNPSACLQAGDDNIY 1385
            ++     S+ +WTG+QLFS++   +FD   A  +  I NG+ +     S  L+  D N++
Sbjct: 544  IVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSDVVIHNGDLICSSEGSTWLRDADGNLF 603

Query: 1386 SYLIRNFEGDEVLEFLHSAQELMIEWLSSRGFSV--XXXXXXXXXXXKHNMNDEVLYGLY 1559
              LI++++G +VL+FLH+AQE++ EWLS RG SV             + NM DE+ YGL 
Sbjct: 604  QSLIKHYQG-KVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDSDSQKNMMDEIFYGLQ 662

Query: 1560 EAERQAHGQLLMVDGHQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXF 1739
            EAE+  + + LMVD  QDF    L GN  +   +  LD ++MCY++Q            F
Sbjct: 663  EAEQTCNFKQLMVDSCQDF----LAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSF 718

Query: 1740 KQVFRDVQNLIYSYATRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREF 1919
            KQVFRD+QNL+Y YA +ENS  +M KAGSKGN+LK +QHSMC+G QHSLVPLSF FP + 
Sbjct: 719  KQVFRDIQNLLYKYANKENSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQL 778

Query: 1920 SCVSWNDHKS------ADSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFG 2081
            SC +WN+ KS       D +  S   +Y+PY V++SSF+ GLNP+E FVHSVT RD SF 
Sbjct: 779  SCAAWNNQKSHILTQKVDDTDES-AKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFS 837

Query: 2082 GHADISGTLFRKLMFFMRDLYIAYDGTVRNCYGNQLVQFSYNSKNAPGQSKSLLDKAEC- 2258
             +AD+ GTL R+LMFFMRDL  AYDGTVRN YG+Q+VQF YN+        S  DK    
Sbjct: 838  DNADLPGTLSRRLMFFMRDLCTAYDGTVRNAYGDQVVQFCYNTNKGRFSPTSCPDKLVSQ 897

Query: 2259 ---------GAPVGSLAACAISEAAYGALDQPVSALE 2342
                     G PVGSL+ACAISEAAY ALDQP+S LE
Sbjct: 898  GNSLPDGIGGQPVGSLSACAISEAAYSALDQPISLLE 934


>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
          Length = 1478

 Score =  793 bits (2049), Expect = 0.0
 Identities = 419/817 (51%), Positives = 549/817 (67%), Gaps = 40/817 (4%)
 Frame = +3

Query: 12   SKICKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKLISGK----SLPHDYWDF 179
            +K CKYC  +  + YP M+FK++SK++F KSAI VE+     +   K    +LP DYWDF
Sbjct: 122  TKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPADYWDF 181

Query: 180  VHEDSQQEEAFSSFSRKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRV 359
            + +D QQEE F    R+VL+HAQV  +LKDV P F+K  + + + IF+  FP+TPN HRV
Sbjct: 182  IPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSHRV 241

Query: 360  AEF------GQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRDP-- 515
             E        Q L FDERTR Y+K+V FRG ANELS+ V +C+K+SK+  EKP+  D   
Sbjct: 242  TEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTEDSAL 301

Query: 516  ----DSTEDNPSKMHGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLV 683
                   +D+ S M GL+YMK+V LGKR D CFR+V  G+P +KL EIG+P  +AE + +
Sbjct: 302  IAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQI 361

Query: 684  SEQLNSLNWERINASCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVL 863
            +EQLN  N ER+   C LRIL+KGE  IRR G LV +R+ +++++GDT+YRPL+DGD VL
Sbjct: 362  AEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGDTVL 421

Query: 864  VNRPPSIHPHSLIALRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELR 1043
            +NRPPSIH HSLIAL VKVLP++ V+S NPL+C PFRGDFDGD LHGY+PQS+ +R EL 
Sbjct: 422  INRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELS 481

Query: 1044 ELVSLENQLVDKQSGKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPA 1223
            ELVSL+ QL++ QSG+NL+SLSHDSLT A+L+ EDGV  N  Q+QQL+MFC      LPA
Sbjct: 482  ELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHS-PLPA 540

Query: 1224 VMG----SSCLWTGRQLFSLVLDKDFDANVAET--QIKNGEFVSLLNPSACLQAGDDNIY 1385
            ++     S+ +WTG+QLFS++   +FD   A +   I NG+ +     S+ L+  D N++
Sbjct: 541  IVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGNLF 600

Query: 1386 SYLIRNFEGDEVLEFLHSAQELMIEWLSSRGFSV--XXXXXXXXXXXKHNMNDEVLYGLY 1559
              LI++++G +VL+FLH+AQE++ EWLS RG SV             + NM DE+ YGL 
Sbjct: 601  QSLIKHYQG-KVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQ 659

Query: 1560 EAERQAHGQLLMVDGHQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXF 1739
            EAE+  + + LMVD  QDF    L GN  +   +  LD ++MCY++Q            F
Sbjct: 660  EAEQTCNFKQLMVDSCQDF----LAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSF 715

Query: 1740 KQVFRDVQNLIYSYATRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREF 1919
            KQVFRD+QNL+Y YA ++NS  +M KAGSKGN+LK +QHSMC+G QHSLVPLSF FP + 
Sbjct: 716  KQVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQL 775

Query: 1920 SCVSWNDHKS------ADSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFG 2081
            SC +WN+ KS       D +  S   +Y+PY V++SSF+ GLNP+E FVHSVT RD SF 
Sbjct: 776  SCAAWNNQKSHILTQKVDDTDES-AKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFS 834

Query: 2082 GHADISGTLFRKLMFFMRDLYIAYDGTVRNCYGNQLVQFSYNSKNAPGQSKSLLDKAEC- 2258
             +AD+ GTL R+LMFFMRDL  AYDGTVRN YG+Q+VQF YN         S  DK    
Sbjct: 835  DNADLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQ 894

Query: 2259 ---------GAPVGSLAACAISEAAYGALDQPVSALE 2342
                     G PVGSL+ACAISEAAY ALDQP+S LE
Sbjct: 895  GSSLPDGIGGQPVGSLSACAISEAAYSALDQPISLLE 931


>ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium raimondii]
 ref|XP_012476046.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Gossypium raimondii]
 gb|KJB25755.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
 gb|KJB25757.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
          Length = 1481

 Score =  793 bits (2049), Expect = 0.0
 Identities = 419/817 (51%), Positives = 549/817 (67%), Gaps = 40/817 (4%)
 Frame = +3

Query: 12   SKICKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKLISGK----SLPHDYWDF 179
            +K CKYC  +  + YP M+FK++SK++F KSAI VE+     +   K    +LP DYWDF
Sbjct: 125  TKGCKYCVGNSIEWYPPMRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPADYWDF 184

Query: 180  VHEDSQQEEAFSSFSRKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRV 359
            + +D QQEE F    R+VL+HAQV  +LKDV P F+K  + + + IF+  FP+TPN HRV
Sbjct: 185  IPKDQQQEEGFVKPGRRVLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSHRV 244

Query: 360  AEF------GQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRDP-- 515
             E        Q L FDERTR Y+K+V FRG ANELS+ V +C+K+SK+  EKP+  D   
Sbjct: 245  TEIMHTSSNAQRLIFDERTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTEDSAL 304

Query: 516  ----DSTEDNPSKMHGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLV 683
                   +D+ S M GL+YMK+V LGKR D CFR+V  G+P +KL EIG+P  +AE + +
Sbjct: 305  IAALKKNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQI 364

Query: 684  SEQLNSLNWERINASCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVL 863
            +EQLN  N ER+   C LRIL+KGE  IRR G LV +R+ +++++GDT+YRPL+DGD VL
Sbjct: 365  AEQLNRWNEERLKTCCNLRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGDTVL 424

Query: 864  VNRPPSIHPHSLIALRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELR 1043
            +NRPPSIH HSLIAL VKVLP++ V+S NPL+C PFRGDFDGD LHGY+PQS+ +R EL 
Sbjct: 425  INRPPSIHQHSLIALSVKVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELS 484

Query: 1044 ELVSLENQLVDKQSGKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPA 1223
            ELVSL+ QL++ QSG+NL+SLSHDSLT A+L+ EDGV  N  Q+QQL+MFC      LPA
Sbjct: 485  ELVSLDRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHS-PLPA 543

Query: 1224 VMG----SSCLWTGRQLFSLVLDKDFDANVAET--QIKNGEFVSLLNPSACLQAGDDNIY 1385
            ++     S+ +WTG+QLFS++   +FD   A +   I NG+ +     S+ L+  D N++
Sbjct: 544  IVKAPLLSNPVWTGKQLFSMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGNLF 603

Query: 1386 SYLIRNFEGDEVLEFLHSAQELMIEWLSSRGFSV--XXXXXXXXXXXKHNMNDEVLYGLY 1559
              LI++++G +VL+FLH+AQE++ EWLS RG SV             + NM DE+ YGL 
Sbjct: 604  QSLIKHYQG-KVLDFLHAAQEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQ 662

Query: 1560 EAERQAHGQLLMVDGHQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXF 1739
            EAE+  + + LMVD  QDF    L GN  +   +  LD ++MCY++Q            F
Sbjct: 663  EAEQTCNFKQLMVDSCQDF----LAGNDEETNRFMVLDVEQMCYEKQRSAALSQASVDSF 718

Query: 1740 KQVFRDVQNLIYSYATRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREF 1919
            KQVFRD+QNL+Y YA ++NS  +M KAGSKGN+LK +QHSMC+G QHSLVPLSF FP + 
Sbjct: 719  KQVFRDIQNLLYKYANKDNSLFTMFKAGSKGNLLKLVQHSMCLGLQHSLVPLSFRFPHQL 778

Query: 1920 SCVSWNDHKS------ADSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFG 2081
            SC +WN+ KS       D +  S   +Y+PY V++SSF+ GLNP+E FVHSVT RD SF 
Sbjct: 779  SCAAWNNQKSHILTQKVDDTDES-AKKYIPYAVVESSFVKGLNPLECFVHSVTTRDTSFS 837

Query: 2082 GHADISGTLFRKLMFFMRDLYIAYDGTVRNCYGNQLVQFSYNSKNAPGQSKSLLDKAEC- 2258
             +AD+ GTL R+LMFFMRDL  AYDGTVRN YG+Q+VQF YN         S  DK    
Sbjct: 838  DNADLPGTLSRRLMFFMRDLCAAYDGTVRNAYGDQVVQFCYNIDKGTFSPTSCPDKLVSQ 897

Query: 2259 ---------GAPVGSLAACAISEAAYGALDQPVSALE 2342
                     G PVGSL+ACAISEAAY ALDQP+S LE
Sbjct: 898  GSSLPDGIGGQPVGSLSACAISEAAYSALDQPISLLE 934


>ref|XP_017973942.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3
            [Theobroma cacao]
          Length = 1203

 Score =  784 bits (2024), Expect = 0.0
 Identities = 409/819 (49%), Positives = 555/819 (67%), Gaps = 39/819 (4%)
 Frame = +3

Query: 3    IQASKICKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKLISGK----SLPHDY 170
            +   K CKYC  +  D YP M FK+SSKD+F KSAI VE+     +   K    +LP DY
Sbjct: 122  VNQRKGCKYCVGNSIDWYPPMNFKISSKDLFRKSAIIVEVSEKSSMKVRKRGKQALPSDY 181

Query: 171  WDFVHEDSQQEEAFSSFSRKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNC 350
            WDF+ +D QQEE+    +R+VL+H+QV  +LKDV+P F+K  ++  + IF+  FP+TPN 
Sbjct: 182  WDFIPKDEQQEESLIRPNRRVLSHSQVRYLLKDVDPEFIKKFVLSMDSIFLNCFPVTPNS 241

Query: 351  HRVAEF------GQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRD 512
            HRV E       GQ L FD+RTR Y+K+  FRG ANELS+ V +C+K+SK+  EKP+  +
Sbjct: 242  HRVTEIMHASSNGQRLIFDQRTRVYKKLADFRGIANELSSHVLECLKISKLHLEKPSNEE 301

Query: 513  P------DSTEDNPSKMHGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAET 674
                      +D+ S M GL+YMK+V LGKR D CFR+V  G+P +KL EIG+P  +AE 
Sbjct: 302  SALVLAQKRNKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAER 361

Query: 675  MLVSEQLNSLNWERINASCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGD 854
            + ++EQLN+ N ER+ A C LR+L+KGE  +RR G LV +R+ ++L++GDT++RPL++GD
Sbjct: 362  LQIAEQLNNWNEERLKACCDLRLLEKGEIHVRREGRLVRIRHNEKLQVGDTIFRPLNNGD 421

Query: 855  IVLVNRPPSIHPHSLIALRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRA 1034
            I+L+NRPPSIH HSLIAL VKVLP+S V+S NPL+C PFRGDFDGD LHGY+PQS+++R 
Sbjct: 422  IILINRPPSIHQHSLIALSVKVLPVSSVVSINPLICSPFRGDFDGDCLHGYVPQSIKARV 481

Query: 1035 ELRELVSLENQLVDKQSGKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLE 1214
            EL ELVSL  QL++ QSG+NL+SLSHDSLT A+L+ EDGV  N  Q+QQL+MFC      
Sbjct: 482  ELIELVSLNRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHS-P 540

Query: 1215 LPAVMGS----SCLWTGRQLFSLV--LDKDFDANVAETQIKNGEFVSLLNPSACLQAGDD 1376
             PA++ +    S +WTG+QL S++  L+ D+D    +  I+NGE +S    S  L+  D 
Sbjct: 541  FPAIVKAPLLRSSVWTGKQLLSMLFPLEFDYDFTPNDVVIRNGELISSSEGSTWLRDADG 600

Query: 1377 NIYSYLIRNFEGDEVLEFLHSAQELMIEWLSSRGFSV--XXXXXXXXXXXKHNMNDEVLY 1550
            N++  LI++++G +VL+FL++AQE++ EWLS RG SV             + NM DE+  
Sbjct: 601  NLFQSLIKHYQG-KVLDFLYAAQEVLCEWLSMRGLSVSLLDLYLSSDSNSQKNMMDEIFC 659

Query: 1551 GLYEAERQAHGQLLMVDGHQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXX 1730
            GL E E+  + + LMVD + DF    L G+  + + +  LD ++MCY++Q          
Sbjct: 660  GLQEIEQTCNFKQLMVDSNHDF----LVGHDEEVDSFMALDVEQMCYEKQRSAALSQASV 715

Query: 1731 XXFKQVFRDVQNLIYSYATRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFP 1910
              FKQVFRD+QNL+Y YA ++NS L+M KAGSKGN+LK +QHS+C+G QHSLVPLSF FP
Sbjct: 716  DSFKQVFRDIQNLLYKYANKDNSLLTMFKAGSKGNLLKLVQHSLCLGLQHSLVPLSFRFP 775

Query: 1911 REFSCVSWNDHKSAD-----SSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDAS 2075
             + SC +WN+ KS          +     Y+PY V++SSF++GLNP+E FVHSVT+RD+S
Sbjct: 776  HQLSCAAWNNQKSHGLTQKVDDTAESAKNYIPYAVVESSFMTGLNPLESFVHSVTSRDSS 835

Query: 2076 FGGHADISGTLFRKLMFFMRDLYIAYDGTVRNCYGNQLVQFSYN-SKNAPG--------- 2225
            F  +AD+ GTL R+LMFFMRDLY AYDGTVRN  G+ +VQF Y+  K+A           
Sbjct: 836  FSDNADLPGTLSRRLMFFMRDLYTAYDGTVRNSCGDLVVQFCYDIDKDASSPTSCAHELI 895

Query: 2226 QSKSLLDKAECGAPVGSLAACAISEAAYGALDQPVSALE 2342
               S + +   G PVGSL+ACAISEAAY ALDQPVS LE
Sbjct: 896  SESSTIPEGIGGQPVGSLSACAISEAAYSALDQPVSLLE 934


>ref|XP_009797463.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana sylvestris]
 ref|XP_009797464.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana sylvestris]
 ref|XP_009797465.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana sylvestris]
 ref|XP_009797466.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana sylvestris]
 ref|XP_009797467.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Nicotiana sylvestris]
          Length = 1447

 Score =  790 bits (2041), Expect = 0.0
 Identities = 426/790 (53%), Positives = 546/790 (69%), Gaps = 16/790 (2%)
 Frame = +3

Query: 21   CKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEIVNPEKL--ISGKSLPHDYWDFVHEDS 194
            C YCD   +  YP MKFKVS KD+FG++AI  E V+ +KL   SG SL  DYW+F+ +D+
Sbjct: 117  CNYCDGILRG-YPPMKFKVSPKDMFGRTAIIAE-VSEKKLQQTSGGSLASDYWNFIPDDA 174

Query: 195  QQEEAFSSFS-RKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRVAEFG 371
            QQ+ + +S   +KVLTHAQVY ILKDV+P FL+G L +KN IF+++  LTPN HRV EFG
Sbjct: 175  QQDASLNSSKYKKVLTHAQVYSILKDVDPGFLEGLLRRKNSIFLKSCLLTPNSHRVTEFG 234

Query: 372  QNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRDPDSTEDNPSKMHG 551
            Q++ FDE  R YRK++ FRGTAN+LS CV + IK+SKIRAE+    DP++         G
Sbjct: 235  QHMIFDESNRLYRKLIDFRGTANDLSMCVFNRIKVSKIRAERSLTNDPNAPAT------G 288

Query: 552  LKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLVSEQLNSLNWERINASC 731
            LKY+KE+ L KRT+  FR+V VGDP IKL EIG+P  +AE + ++E L+S NWE+++  C
Sbjct: 289  LKYVKELVLAKRTNHAFRMVVVGDPNIKLGEIGIPCHVAEDLHMAEPLSSRNWEKLSDHC 348

Query: 732  GLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLVNRPPSIHPHSLIALR 911
             L ILQKG   +RR G LV +   DQL+ GD +YRPL DGD+VL+NRPPSIH HSLIAL 
Sbjct: 349  DLMILQKGAIHVRRNGVLVRISVMDQLQRGDIIYRPLIDGDVVLINRPPSIHQHSLIALS 408

Query: 912  VKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELRELVSLENQLVDKQSGK 1091
            V++LPI  VLS NPLVC PFRGDFDGD LHGY+PQS++SR EL ELV L  QL+D QSG+
Sbjct: 409  VRILPIISVLSINPLVCSPFRGDFDGDCLHGYVPQSIDSRVELSELVGLNRQLIDGQSGQ 468

Query: 1092 NLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPAVM----GSSCLWTGRQ 1259
            NL+SLSHDSLT AHL+LE+GVF +R Q+QQLQMFC  Q + +PA++     +   WTG+Q
Sbjct: 469  NLLSLSHDSLTAAHLILEEGVFLDRFQMQQLQMFCPHQ-VGMPAIVRAPSRNRSYWTGKQ 527

Query: 1260 LFSLVLDKDFDANVAETQ--IKNGEFVSLLNPSACLQAGDDNIYSYLIRNFEGDEVLEFL 1433
            LF L L  D D +       I +GE V+    S+ L+   +N++  L+++  GD  L+ L
Sbjct: 528  LFGLFLPSDLDCDFPSNGVCISDGEIVTSSGGSSWLRDASENLFYSLVKHHGGD-TLDLL 586

Query: 1434 HSAQELMIEWLSSRGFSV--XXXXXXXXXXXKHNMNDEVLYGLYEAERQAHGQLLMVDGH 1607
            ++AQ ++ EWLS RG SV             + NM DEV  GL EAER ++ QLLM   +
Sbjct: 587  YAAQAVLCEWLSMRGLSVSLSDLYISSDPYSRENMIDEVFCGLQEAERLSYVQLLMTRYN 646

Query: 1608 QDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXFKQVFRDVQNLIYSYAT 1787
             DFL G L   +++K    G D + M    Q            FKQVFRD+QNL+Y+YA+
Sbjct: 647  HDFLAGSL--EVSQKA--MGFDLEFMSIMLQKSASLSQASVTAFKQVFRDIQNLVYNYAS 702

Query: 1788 RENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREFSCVSWNDHKS-----A 1952
            +ENSFL+MLKAGSKGN+LK +QHSMC+G Q SLVPLSF  PR+ SC +WN+HK+      
Sbjct: 703  KENSFLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPLSFRMPRQLSCDAWNNHKAHLPFEK 762

Query: 1953 DSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFGGHADISGTLFRKLMFFM 2132
              +       Y+P  V+++SFL+GLNP+E FVHS+T RD+SF GHAD+SGTL RKLMFFM
Sbjct: 763  AHNVPERPGSYIPCAVVENSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFM 822

Query: 2133 RDLYIAYDGTVRNCYGNQLVQFSYNSKNAPGQSKSLLDKAECGAPVGSLAACAISEAAYG 2312
            RDLYI YDGTVRN YGNQ+VQFSY + +    + +    A  G PVGSLAACAISEAAY 
Sbjct: 823  RDLYIGYDGTVRNAYGNQIVQFSYYNTDQIASTYNRASHAIGGHPVGSLAACAISEAAYS 882

Query: 2313 ALDQPVSALE 2342
            ALD P+ ALE
Sbjct: 883  ALDLPIGALE 892


>gb|PHU28344.1| hypothetical protein BC332_00437 [Capsicum chinense]
          Length = 1449

 Score =  790 bits (2041), Expect = 0.0
 Identities = 425/800 (53%), Positives = 549/800 (68%), Gaps = 26/800 (3%)
 Frame = +3

Query: 21   CKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEI----VNPEKLISGKSLPHDYWDFVHE 188
            CKYCD +    YP  KFKVS KD+FGK+AI  E+    +  ++ I+G SL  DYWDF+  
Sbjct: 118  CKYCDGTL--GYPPTKFKVSPKDMFGKTAIIAEVNENALKKQREITGVSLASDYWDFIPH 175

Query: 189  DSQQEEAFSSFS-RKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRVAE 365
            D+QQ+ + SS + ++VL+HAQVY ILKDV+P FL+G L +KN IFMQN  LTPNCHRV E
Sbjct: 176  DAQQDASLSSSNYKRVLSHAQVYSILKDVDPGFLEGLLKRKNSIFMQNCLLTPNCHRVTE 235

Query: 366  FGQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRDPDSTEDNPSKM 545
            FGQ++ FDE  R YRK++ FRGTAN+LS CV D IK+SKIRAE+  I DP +        
Sbjct: 236  FGQHMIFDESNRLYRKLIDFRGTANDLSVCVYDRIKVSKIRAERSIINDPAAPAT----- 290

Query: 546  HGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLVSEQLNSLNWERINA 725
             GLKY+KE+ L KRT+  FR+V VGDP I+L EIG+P  +AE + ++E L+S NWE++  
Sbjct: 291  -GLKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAEPLSSRNWEKMTD 349

Query: 726  SCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLVNRPPSIHPHSLIA 905
             C L ILQKG   +RR+G L+ V   DQL+ GD ++RPL DGD+VL+NRPPSIH HSLIA
Sbjct: 350  LCDLMILQKGGILVRRKGVLIRVSVMDQLQRGDVIHRPLVDGDVVLINRPPSIHQHSLIA 409

Query: 906  LRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELRELVSLENQLVDKQS 1085
            L V++LP++ VLS NPLVC PFRGDFDGDSLHGY+PQS++SR EL ELV+L  QL+D Q+
Sbjct: 410  LSVRILPVNSVLSINPLVCSPFRGDFDGDSLHGYVPQSIDSRIELSELVALNQQLIDGQN 469

Query: 1086 GKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPAVM---GSSCLWTGR 1256
            G+NL+SLSHDSLT A+L+LE  VF +R Q+QQLQMFC RQ + + A++        WTG+
Sbjct: 470  GQNLLSLSHDSLTAANLILEPTVFLDRVQMQQLQMFCPRQ-MGMNAIIRAPSGKSYWTGK 528

Query: 1257 QLFSLVLDKDFDANVAETQ--IKNGEFVSLLNPSACLQAGDDNIYSYLIRNFEGDEVLEF 1430
            QLFSL+L  D +         I  GE ++  + S+ L+   +N++  L+++  GD  L+ 
Sbjct: 529  QLFSLLLPSDLEYVFPSNGVCISEGEILTSSSGSSWLRDASENLFYSLVKHHGGD-TLDL 587

Query: 1431 LHSAQELMIEWLSSRGFSV--XXXXXXXXXXXKHNMNDEVLYGLYEAERQAHGQLLMVDG 1604
            L++AQ ++ EWLS RG SV             + NM DEV+ GL EAER ++ QLLMV  
Sbjct: 588  LYAAQAVLGEWLSMRGLSVSLSDLYISSDLFSRENMIDEVISGLQEAERLSYIQLLMVKY 647

Query: 1605 HQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXFKQVFRDVQNLIYSYA 1784
            ++DF    L GN+ + +   G D + M   QQ            FK VFR+ QNL+Y+YA
Sbjct: 648  NKDF----LAGNLEESKNSMGFDLEFMSIMQQKSASLSQASATAFKHVFRNTQNLVYNYA 703

Query: 1785 TRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREFSCVSWNDHKS----- 1949
            + +NSFL+MLKAGSKGN+LK +QHSMC+G Q SLVPLSF  PR+ SC  WN H++     
Sbjct: 704  SNDNSFLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPLSFRIPRQLSCDGWNSHRTNLVFE 763

Query: 1950 ADSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFGGHADISGTLFRKLMFF 2129
               +       Y+P  V++SSFL+GLNP+E FVHS+ +RD+SF GHAD+SGTL RKLMFF
Sbjct: 764  KAHNVPECPGPYIPCAVVESSFLAGLNPLECFVHSLISRDSSFSGHADVSGTLNRKLMFF 823

Query: 2130 MRDLYIAYDGTVRNCYGNQLVQFSYNSKNAPG---------QSKSLLDKAECGAPVGSLA 2282
            MRDLY+ YDGTVRN YGNQ+VQFSYN  +            +S +    A  G PVGSLA
Sbjct: 824  MRDLYVGYDGTVRNAYGNQIVQFSYNEADQISCTTGSGETVESHNHATHAIGGHPVGSLA 883

Query: 2283 ACAISEAAYGALDQPVSALE 2342
            ACAISEAAY ALDQPVSALE
Sbjct: 884  ACAISEAAYSALDQPVSALE 903


>ref|XP_016567800.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
            [Capsicum annuum]
 gb|PHT92507.1| hypothetical protein T459_00389 [Capsicum annuum]
          Length = 1449

 Score =  790 bits (2040), Expect = 0.0
 Identities = 425/800 (53%), Positives = 548/800 (68%), Gaps = 26/800 (3%)
 Frame = +3

Query: 21   CKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEI----VNPEKLISGKSLPHDYWDFVHE 188
            CKYCD +    YP  KFKVS KD+FGK+AI  E+    +  ++ I+G SL  DYWDF+  
Sbjct: 118  CKYCDGTL--GYPPTKFKVSPKDMFGKTAIIAEVNENALKKQREITGVSLASDYWDFIPH 175

Query: 189  DSQQEEAFSSFS-RKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRVAE 365
            D+QQ+ + SS + ++VL+HAQVY ILKDV+P FL+G L +KN IFMQN  LTPNCHRV E
Sbjct: 176  DAQQDASLSSSNYKRVLSHAQVYSILKDVDPGFLEGLLKRKNSIFMQNCLLTPNCHRVTE 235

Query: 366  FGQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRDPDSTEDNPSKM 545
            FGQ++ FDE  R YRK++ FRGTAN+LS CV D IK+SKIRAE+  I DP +        
Sbjct: 236  FGQHMIFDESNRLYRKLIDFRGTANDLSVCVFDRIKVSKIRAERSIINDPAAPAT----- 290

Query: 546  HGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLVSEQLNSLNWERINA 725
             GLKY+KE+ L KRT+  FR+V VGDP I+L EIG+P  +AE + ++E L+S NWE++  
Sbjct: 291  -GLKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAEPLSSRNWEKMTD 349

Query: 726  SCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLVNRPPSIHPHSLIA 905
             C L ILQKG   +RR+G L+ V   DQL+ GD ++RPL DGD+VL+NRPPSIH HSLIA
Sbjct: 350  LCDLMILQKGGILVRRKGVLIRVSVMDQLQRGDVIHRPLVDGDVVLINRPPSIHQHSLIA 409

Query: 906  LRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELRELVSLENQLVDKQS 1085
            L V++LP++ VLS NPLVC PFRGDFDGDSLHGY+PQS++SR EL ELV+L  QL+D Q+
Sbjct: 410  LSVRILPVNSVLSINPLVCSPFRGDFDGDSLHGYVPQSIDSRIELSELVALNQQLIDGQN 469

Query: 1086 GKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPAVM---GSSCLWTGR 1256
            G+NL+SLSHDSLT A+L+LE  VF +R Q+QQLQMFC RQ + + A++        WTG+
Sbjct: 470  GQNLLSLSHDSLTAANLILEPTVFLDRVQMQQLQMFCPRQ-MGMNAIIRAPSGKSYWTGK 528

Query: 1257 QLFSLVLDKDFDANVAETQ--IKNGEFVSLLNPSACLQAGDDNIYSYLIRNFEGDEVLEF 1430
            QLFSL+L  D +         I  GE ++  + S+ L+   +N++  L+++  GD  L+ 
Sbjct: 529  QLFSLLLPSDLEYVFPSNGVCISEGEILTSSSGSSWLRDASENLFYSLVKHHGGD-TLDL 587

Query: 1431 LHSAQELMIEWLSSRGFSV--XXXXXXXXXXXKHNMNDEVLYGLYEAERQAHGQLLMVDG 1604
            L++AQ ++ EWLS RG SV             + NM DEV+ GL EAER ++ QLLMV  
Sbjct: 588  LYAAQAVLGEWLSMRGLSVSLSDLYISSDLFSRENMIDEVISGLQEAERLSYIQLLMVKY 647

Query: 1605 HQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXFKQVFRDVQNLIYSYA 1784
            ++DF    L GN+ + +   G D + M   QQ            FK VFR+ QNL+Y+YA
Sbjct: 648  NKDF----LAGNLEESKNSMGFDLEFMSIMQQKSASLSQASATAFKHVFRNTQNLVYNYA 703

Query: 1785 TRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREFSCVSWNDHKS----- 1949
            + +NSFL+MLKAGSKGN+LK +QHSMC+G Q SLVPLSF  PR+ SC  WN H++     
Sbjct: 704  SNDNSFLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPLSFRIPRQLSCDGWNSHRTNLVFE 763

Query: 1950 ADSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFGGHADISGTLFRKLMFF 2129
                       Y+P  V++SSFL+GLNP+E FVHS+ +RD+SF GHAD+SGTL RKLMFF
Sbjct: 764  KAHKVPECPGPYIPCAVVESSFLAGLNPLECFVHSLISRDSSFSGHADVSGTLNRKLMFF 823

Query: 2130 MRDLYIAYDGTVRNCYGNQLVQFSYNSKNAPG---------QSKSLLDKAECGAPVGSLA 2282
            MRDLY+ YDGTVRN YGNQ+VQFSYN  +            +S +    A  G PVGSLA
Sbjct: 824  MRDLYVGYDGTVRNAYGNQIVQFSYNEADQISCTTGTGETVESHNHATHAIGGHPVGSLA 883

Query: 2283 ACAISEAAYGALDQPVSALE 2342
            ACAISEAAY ALDQPVSALE
Sbjct: 884  ACAISEAAYSALDQPVSALE 903


>ref|XP_016567789.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Capsicum annuum]
 ref|XP_016567795.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
            [Capsicum annuum]
          Length = 1450

 Score =  790 bits (2040), Expect = 0.0
 Identities = 425/800 (53%), Positives = 548/800 (68%), Gaps = 26/800 (3%)
 Frame = +3

Query: 21   CKYCDRSYKDDYPAMKFKVSSKDVFGKSAISVEI----VNPEKLISGKSLPHDYWDFVHE 188
            CKYCD+     YP  KFKVS KD+FGK+AI  E+    +  ++ I+G SL  DYWDF+  
Sbjct: 118  CKYCDQGTLG-YPPTKFKVSPKDMFGKTAIIAEVNENALKKQREITGVSLASDYWDFIPH 176

Query: 189  DSQQEEAFSSFS-RKVLTHAQVYQILKDVEPSFLKGSLMKKNKIFMQNFPLTPNCHRVAE 365
            D+QQ+ + SS + ++VL+HAQVY ILKDV+P FL+G L +KN IFMQN  LTPNCHRV E
Sbjct: 177  DAQQDASLSSSNYKRVLSHAQVYSILKDVDPGFLEGLLKRKNSIFMQNCLLTPNCHRVTE 236

Query: 366  FGQNLTFDERTRAYRKMVAFRGTANELSTCVTDCIKLSKIRAEKPTIRDPDSTEDNPSKM 545
            FGQ++ FDE  R YRK++ FRGTAN+LS CV D IK+SKIRAE+  I DP +        
Sbjct: 237  FGQHMIFDESNRLYRKLIDFRGTANDLSVCVFDRIKVSKIRAERSIINDPAAPAT----- 291

Query: 546  HGLKYMKEVSLGKRTDFCFRLVCVGDPYIKLDEIGVPRDLAETMLVSEQLNSLNWERINA 725
             GLKY+KE+ L KRT+  FR+V VGDP I+L EIG+P  +AE + ++E L+S NWE++  
Sbjct: 292  -GLKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIPCHVAENLHMAEPLSSRNWEKMTD 350

Query: 726  SCGLRILQKGETFIRRRGGLVPVRYGDQLRIGDTVYRPLHDGDIVLVNRPPSIHPHSLIA 905
             C L ILQKG   +RR+G L+ V   DQL+ GD ++RPL DGD+VL+NRPPSIH HSLIA
Sbjct: 351  LCDLMILQKGGILVRRKGVLIRVSVMDQLQRGDVIHRPLVDGDVVLINRPPSIHQHSLIA 410

Query: 906  LRVKVLPISCVLSYNPLVCDPFRGDFDGDSLHGYIPQSLESRAELRELVSLENQLVDKQS 1085
            L V++LP++ VLS NPLVC PFRGDFDGDSLHGY+PQS++SR EL ELV+L  QL+D Q+
Sbjct: 411  LSVRILPVNSVLSINPLVCSPFRGDFDGDSLHGYVPQSIDSRIELSELVALNQQLIDGQN 470

Query: 1086 GKNLISLSHDSLTGAHLMLEDGVFFNRPQLQQLQMFCRRQKLELPAVM---GSSCLWTGR 1256
            G+NL+SLSHDSLT A+L+LE  VF +R Q+QQLQMFC RQ + + A++        WTG+
Sbjct: 471  GQNLLSLSHDSLTAANLILEPTVFLDRVQMQQLQMFCPRQ-MGMNAIIRAPSGKSYWTGK 529

Query: 1257 QLFSLVLDKDFDANVAETQ--IKNGEFVSLLNPSACLQAGDDNIYSYLIRNFEGDEVLEF 1430
            QLFSL+L  D +         I  GE ++  + S+ L+   +N++  L+++  GD  L+ 
Sbjct: 530  QLFSLLLPSDLEYVFPSNGVCISEGEILTSSSGSSWLRDASENLFYSLVKHHGGD-TLDL 588

Query: 1431 LHSAQELMIEWLSSRGFSV--XXXXXXXXXXXKHNMNDEVLYGLYEAERQAHGQLLMVDG 1604
            L++AQ ++ EWLS RG SV             + NM DEV+ GL EAER ++ QLLMV  
Sbjct: 589  LYAAQAVLGEWLSMRGLSVSLSDLYISSDLFSRENMIDEVISGLQEAERLSYIQLLMVKY 648

Query: 1605 HQDFLTGDLTGNMTKKEGYSGLDSDKMCYKQQTXXXXXXXXXXXFKQVFRDVQNLIYSYA 1784
            ++DF    L GN+ + +   G D + M   QQ            FK VFR+ QNL+Y+YA
Sbjct: 649  NKDF----LAGNLEESKNSMGFDLEFMSIMQQKSASLSQASATAFKHVFRNTQNLVYNYA 704

Query: 1785 TRENSFLSMLKAGSKGNMLKFMQHSMCVGYQHSLVPLSFNFPREFSCVSWNDHKS----- 1949
            + +NSFL+MLKAGSKGN+LK +QHSMC+G Q SLVPLSF  PR+ SC  WN H++     
Sbjct: 705  SNDNSFLAMLKAGSKGNLLKLVQHSMCLGLQQSLVPLSFRIPRQLSCDGWNSHRTNLVFE 764

Query: 1950 ADSSFSSGVDRYVPYGVIKSSFLSGLNPMELFVHSVTNRDASFGGHADISGTLFRKLMFF 2129
                       Y+P  V++SSFL+GLNP+E FVHS+ +RD+SF GHAD+SGTL RKLMFF
Sbjct: 765  KAHKVPECPGPYIPCAVVESSFLAGLNPLECFVHSLISRDSSFSGHADVSGTLNRKLMFF 824

Query: 2130 MRDLYIAYDGTVRNCYGNQLVQFSYNSKNAPG---------QSKSLLDKAECGAPVGSLA 2282
            MRDLY+ YDGTVRN YGNQ+VQFSYN  +            +S +    A  G PVGSLA
Sbjct: 825  MRDLYVGYDGTVRNAYGNQIVQFSYNEADQISCTTGTGETVESHNHATHAIGGHPVGSLA 884

Query: 2283 ACAISEAAYGALDQPVSALE 2342
            ACAISEAAY ALDQPVSALE
Sbjct: 885  ACAISEAAYSALDQPVSALE 904