BLASTX nr result

ID: Chrysanthemum21_contig00025639 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00025639
         (516 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_023741762.1| pre-mRNA-splicing factor ATP-dependent RNA h...    78   2e-13
gb|KVH97857.1| DNA/RNA helicase, DEAD/DEAH box type, N-terminal ...    69   2e-10
ref|XP_021999250.1| pre-mRNA-splicing factor ATP-dependent RNA h...    67   7e-10

>ref|XP_023741762.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Lactuca
           sativa]
 ref|XP_023741763.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Lactuca
           sativa]
 ref|XP_023741765.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [Lactuca
           sativa]
          Length = 1264

 Score = 77.8 bits (190), Expect = 2e-13
 Identities = 51/92 (55%), Positives = 60/92 (65%), Gaps = 4/92 (4%)
 Frame = +2

Query: 179 LSGLDVLASAKRVEGSFKVPRPKVSSMMESIDVDV*NPDSLIKMTLELGSGVSSSGQN-K 355
           L GLD LASAKR EGSFKVP+ K+SSMM S+D DV    S +    E+GSGVSSSG+N  
Sbjct: 42  LLGLDALASAKRAEGSFKVPKEKISSMMTSLDEDVEKTTSSLTGLDEVGSGVSSSGRNYT 101

Query: 356 SRKY--XXXXXTFDSES-ITEEERSARYATSH 442
           SR+Y       T  SES ITEEER+   +  H
Sbjct: 102 SRQYRDSTGSKTSGSESQITEEERAGGRSARH 133


>gb|KVH97857.1| DNA/RNA helicase, DEAD/DEAH box type, N-terminal [Cynara
           cardunculus var. scolymus]
          Length = 1256

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 51/101 (50%), Positives = 61/101 (60%), Gaps = 8/101 (7%)
 Frame = +2

Query: 179 LSGLDVLASAKR----VEGSFKVPRPKVSSMMESIDVDV*NPDSLIKMTLELGSGVSSSG 346
           L GLDVLA  KR    VEGSFKVPR K SSM+  +D +V    SL+    E+GSGVSSSG
Sbjct: 42  LLGLDVLAIEKRGGSQVEGSFKVPREKASSMLAYLDEEVEKSTSLLTGLDEVGSGVSSSG 101

Query: 347 QN-KSRKY--XXXXXTFDSES-ITEEERSARYATSH*ACYS 457
           +N  SR+Y       T D ES ITEEER    +  H + Y+
Sbjct: 102 RNFSSRRYRDSGGSKTSDLESQITEEERVGGTSARHGSDYN 142


>ref|XP_021999250.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
           [Helianthus annuus]
 gb|OTG06408.1| putative RNA helicase family protein [Helianthus annuus]
          Length = 1283

 Score = 67.4 bits (163), Expect = 7e-10
 Identities = 47/94 (50%), Positives = 59/94 (62%), Gaps = 9/94 (9%)
 Frame = +2

Query: 179 LSGLDVLASAKR----VEGSFKVPRPKVSSMMESIDVDV*NPDSLIKMTLELGSGVSSSG 346
           L GLDVLA+AKR    V+GSFKVP+ K+SSMM S+D +V N  S +    E+ +G SSSG
Sbjct: 42  LLGLDVLANAKRAGTHVDGSFKVPKEKISSMMASMDDEVENAMSTVTGPDEVDNGTSSSG 101

Query: 347 --QNKSRKY--XXXXXTFDSES-ITEEERSARYA 433
              + SR+Y       TFDSES ITEE     Y+
Sbjct: 102 ARNSSSRRYRDSSGIKTFDSESQITEERGDGTYS 135


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