BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00024465
         (850 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_019229744.1| PREDICTED: uncharacterized protein LOC109210...   425   e-147
prf||1211235P rpoC-like ORF 236                                       417   e-145
pir||A05030 rpoC protein homolog - common tobacco chloroplast         415   e-145
ref|YP_009354282.1| RNA polymerase beta'' subunit (chloroplast) ...   426   e-139
ref|YP_009354195.1| RNA polymerase beta'' subunit (chloroplast) ...   426   e-139
gb|PHT44936.1| DNA-directed RNA polymerase subunit beta'' [Capsi...   400   e-137
ref|YP_009186020.1| RNA polymerase beta'' subunit (chloroplast) ...   419   e-133
gb|PLY79379.1| hypothetical protein LSAT_9X5941 [Lactuca sativa]      403   e-132
gb|PHT54967.1| DNA-directed RNA polymerase subunit beta'' [Capsi...   394   e-132
dbj|BBD13783.1| DNA-directed RNA polymerase beta'' chain, partia...   413   e-131
gb|PRQ15716.1| putative DNA-directed RNA polymerase (chloroplast...   418   e-130
ref|YP_009341767.1| RNA polymerase beta' subunit (chloroplast) [...   412   e-130
gb|OTF84746.1| putative RNA polymerase, beta subunit, protrusion...   397   e-129
ref|YP_009471533.1| RNA polymerase beta'' subunit (chloroplast) ...   406   e-128
ref|YP_009111726.1| RNA polymerase beta subunit-2 (chloroplast) ...   398   e-125
gb|AJE74911.1| RNA polymerase beta'' subunit (plastid) [Achillea...   398   e-125
gb|AVI25898.1| RNA polymerase beta subunit-2 (chloroplast) [Chry...   398   e-125
gb|ATL16862.1| RNA polymerase beta'' subunit (chloroplast) [Chry...   398   e-125
gb|ATL16925.1| RNA polymerase beta'' subunit (chloroplast) [Chry...   398   e-125
ref|YP_009365230.1| RNA polymerase beta'' subunit (plastid) [Art...   398   e-125

>ref|XP_019229744.1| PREDICTED: uncharacterized protein LOC109210741 [Nicotiana
           attenuata]
          Length = 367

 Score =  425 bits (1093), Expect = e-147
 Identities = 213/236 (90%), Positives = 219/236 (92%)
 Frame = -3

Query: 710 AGLTRTIIAIAEFLRESRSRKGSFTITDSNPLSNSTQRNMEVLMAERPTQVFHNKMIDGT 531
           +G  R    + EF+RESRS KGSFTITDSNPLSNSTQRNMEVLMAER   VFHNK IDGT
Sbjct: 100 SGNHRARSIVPEFIRESRSNKGSFTITDSNPLSNSTQRNMEVLMAERANLVFHNKAIDGT 159

Query: 530 AMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASISLGIDDLLTIPSKRWLVQDAEQ 351
           AMKRLISR IDH+G+ YTSHILDQVKTLGF+QATA SISLGIDDLLTIPSK WLVQDAEQ
Sbjct: 160 AMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQ 219

Query: 350 QSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGAR 171
           QS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGAR
Sbjct: 220 QSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGAR 279

Query: 170 GNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 3
           GNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA
Sbjct: 280 GNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 335


>prf||1211235P rpoC-like ORF 236
          Length = 236

 Score =  417 bits (1072), Expect = e-145
 Identities = 210/236 (88%), Positives = 218/236 (92%)
 Frame = -3

Query: 740 FYATRGNSSLAGLTRTIIAIAEFLRESRSRKGSFTITDSNPLSNSTQRNMEVLMAERPTQ 561
           FY TRG S L+G  R+I+   EF+RESRS KGSFTITDSNPLSNSTQRNMEVLMAER   
Sbjct: 1   FYDTRGTSGLSGSARSIVP--EFIRESRSIKGSFTITDSNPLSNSTQRNMEVLMAERANL 58

Query: 560 VFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASISLGIDDLLTIPS 381
           VFHNK I+GTAMKRLISR IDH+G+ YTSHILDQVKTLGF+QATA SISLGIDDLLTIPS
Sbjct: 59  VFHNKAINGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPS 118

Query: 380 KRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNP 201
           K WLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNP
Sbjct: 119 KGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNP 178

Query: 200 VHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCY 33
           VHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCY
Sbjct: 179 VHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCY 234


>pir||A05030 rpoC protein homolog - common tobacco chloroplast
          Length = 236

 Score =  415 bits (1066), Expect = e-145
 Identities = 209/235 (88%), Positives = 217/235 (92%)
 Frame = -3

Query: 737 YATRGNSSLAGLTRTIIAIAEFLRESRSRKGSFTITDSNPLSNSTQRNMEVLMAERPTQV 558
           Y TRG S L+G  R+I+   EF+RESRS KGSFTITDSNPLSNSTQRNMEVLMAER   V
Sbjct: 2   YDTRGTSGLSGSARSIVP--EFIRESRSIKGSFTITDSNPLSNSTQRNMEVLMAERANLV 59

Query: 557 FHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASISLGIDDLLTIPSK 378
           FHNK I+GTAMKRLISR IDH+G+ YTSHILDQVKTLGF+QATA SISLGIDDLLTIPSK
Sbjct: 60  FHNKAINGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSK 119

Query: 377 RWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV 198
            WLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV
Sbjct: 120 GWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV 179

Query: 197 HIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCY 33
           HIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCY
Sbjct: 180 HIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCY 234


>ref|YP_009354282.1| RNA polymerase beta'' subunit (chloroplast) [Rehmannia elata]
 gb|AQZ40826.1| RNA polymerase beta'' subunit (chloroplast) [Rehmannia elata]
          Length = 1015

 Score =  426 bits (1096), Expect = e-139
 Identities = 212/227 (93%), Positives = 217/227 (95%)
 Frame = -3

Query: 683 IAEFLRESRSRKGSFTITDSNPLSNSTQRNMEVLMAERPTQVFHNKMIDGTAMKRLISRF 504
           I EFLRESRSRKGSF ITDSNPLSN TQ+NMEV MAER   VFHNK+IDGTAMKRLISRF
Sbjct: 2   ILEFLRESRSRKGSFPITDSNPLSNRTQQNMEVFMAERANLVFHNKVIDGTAMKRLISRF 61

Query: 503 IDHYGIGYTSHILDQVKTLGFRQATAASISLGIDDLLTIPSKRWLVQDAEQQSFILEKHH 324
           IDH+G+ YTSHILDQVKTLGF+QATA SISLGIDDLLTIPSKRWLVQDAEQQS ILEKHH
Sbjct: 62  IDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKRWLVQDAEQQSLILEKHH 121

Query: 323 HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQL 144
           HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQL
Sbjct: 122 HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQL 181

Query: 143 VGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 3
           VGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA
Sbjct: 182 VGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 228


>ref|YP_009354195.1| RNA polymerase beta'' subunit (chloroplast) [Rehmannia piasezkii]
 gb|AQZ40739.1| RNA polymerase beta'' subunit (chloroplast) [Rehmannia piasezkii]
          Length = 1018

 Score =  426 bits (1096), Expect = e-139
 Identities = 212/227 (93%), Positives = 217/227 (95%)
 Frame = -3

Query: 683 IAEFLRESRSRKGSFTITDSNPLSNSTQRNMEVLMAERPTQVFHNKMIDGTAMKRLISRF 504
           I EFLRESRSRKGSF ITDSNPLSN TQ+NMEV MAER   VFHNK+IDGTAMKRLISRF
Sbjct: 2   ILEFLRESRSRKGSFPITDSNPLSNRTQQNMEVFMAERANLVFHNKVIDGTAMKRLISRF 61

Query: 503 IDHYGIGYTSHILDQVKTLGFRQATAASISLGIDDLLTIPSKRWLVQDAEQQSFILEKHH 324
           IDH+G+ YTSHILDQVKTLGF+QATA SISLGIDDLLTIPSKRWLVQDAEQQS ILEKHH
Sbjct: 62  IDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKRWLVQDAEQQSLILEKHH 121

Query: 323 HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQL 144
           HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQL
Sbjct: 122 HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQL 181

Query: 143 VGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 3
           VGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA
Sbjct: 182 VGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 228


>gb|PHT44936.1| DNA-directed RNA polymerase subunit beta'' [Capsicum baccatum]
          Length = 353

 Score =  400 bits (1029), Expect = e-137
 Identities = 202/236 (85%), Positives = 212/236 (89%)
 Frame = -3

Query: 710 AGLTRTIIAIAEFLRESRSRKGSFTITDSNPLSNSTQRNMEVLMAERPTQVFHNKMIDGT 531
           +G  R    + +F+RESRS KGSFTIT+SNPLSN TQRNMEVLMAER   VFHNK IDGT
Sbjct: 100 SGNHRARYIVPKFIRESRSIKGSFTITNSNPLSNPTQRNMEVLMAERANLVFHNKAIDGT 159

Query: 530 AMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASISLGIDDLLTIPSKRWLVQDAEQ 351
           AMKRLISR I H+G+ YTS ILDQ KTLGF+QATA SISLGIDDLLTIPSK WL+QDAEQ
Sbjct: 160 AMKRLISRLIKHFGMAYTSQILDQGKTLGFQQATATSISLGIDDLLTIPSKEWLIQDAEQ 219

Query: 350 QSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGAR 171
           QS ILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFN VHIMSFSGA+
Sbjct: 220 QSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNLVHIMSFSGAK 279

Query: 170 GNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 3
           GNASQVHQLVGMRGLM DPQ QMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA
Sbjct: 280 GNASQVHQLVGMRGLMLDPQEQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 335


>ref|YP_009186020.1| RNA polymerase beta'' subunit (chloroplast) [Gynochthodes
           nanlingensis]
 gb|ALO71340.1| RNA polymerase beta'' subunit (chloroplast) [Gynochthodes
           nanlingensis]
          Length = 1426

 Score =  419 bits (1077), Expect = e-133
 Identities = 213/245 (86%), Positives = 221/245 (90%)
 Frame = -3

Query: 737 YATRGNSSLAGLTRTIIAIAEFLRESRSRKGSFTITDSNPLSNSTQRNMEVLMAERPTQV 558
           Y T  NS L+G     I + EFLRESRSRKGSF ITD NPLSN TQ+NMEVLMAER   V
Sbjct: 2   YNTGRNSGLSG-----IIVPEFLRESRSRKGSFPITDPNPLSNPTQQNMEVLMAERANLV 56

Query: 557 FHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASISLGIDDLLTIPSK 378
           FHNK IDGTAMKRLISR IDH+G+ YTSHILDQVKTLGF+QATA SISLGIDDLLTIPSK
Sbjct: 57  FHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSK 116

Query: 377 RWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPV 198
            WLVQDAEQQS ILEKHHHYGNVH+VEKLRQSIEIWYATSEYLRQEMN NF+MTDPFNPV
Sbjct: 117 GWLVQDAEQQSLILEKHHHYGNVHSVEKLRQSIEIWYATSEYLRQEMNLNFKMTDPFNPV 176

Query: 197 HIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKG 18
           HIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKG
Sbjct: 177 HIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKG 236

Query: 17  VVDTA 3
           VVDTA
Sbjct: 237 VVDTA 241


>gb|PLY79379.1| hypothetical protein LSAT_9X5941 [Lactuca sativa]
          Length = 777

 Score =  403 bits (1035), Expect = e-132
 Identities = 203/217 (93%), Positives = 206/217 (94%), Gaps = 7/217 (3%)
 Frame = -3

Query: 632 TDSNPLSNSTQ-------RNMEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTS 474
           T  +P+S  TQ       RNMEVLMAERPTQVFHNK+IDGTAMKRLISRFIDHYGIGYTS
Sbjct: 179 TIGDPISAPTQDMLSGLYRNMEVLMAERPTQVFHNKVIDGTAMKRLISRFIDHYGIGYTS 238

Query: 473 HILDQVKTLGFRQATAASISLGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEK 294
           HILDQVKTLGFRQATAASISLGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEK
Sbjct: 239 HILDQVKTLGFRQATAASISLGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEK 298

Query: 293 LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDP 114
           LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDP
Sbjct: 299 LRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDP 358

Query: 113 QGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 3
           QGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA
Sbjct: 359 QGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 395


>gb|PHT54967.1| DNA-directed RNA polymerase subunit beta'' [Capsicum baccatum]
          Length = 527

 Score =  394 bits (1013), Expect = e-132
 Identities = 200/236 (84%), Positives = 210/236 (88%)
 Frame = -3

Query: 710 AGLTRTIIAIAEFLRESRSRKGSFTITDSNPLSNSTQRNMEVLMAERPTQVFHNKMIDGT 531
           +G  R    + +F+R+SRS K  FTITDSNPLSN TQRNMEVLM ER   VFHNK ID T
Sbjct: 200 SGNHRARYIVPKFIRKSRSIKECFTITDSNPLSNPTQRNMEVLMVERANLVFHNKAIDRT 259

Query: 530 AMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASISLGIDDLLTIPSKRWLVQDAEQ 351
           AMKRLISR I H+G+ YTSHILDQVKTLGF+QATA SI LGIDDLLTIPSK WLVQDAEQ
Sbjct: 260 AMKRLISRLIKHFGMAYTSHILDQVKTLGFQQATATSILLGIDDLLTIPSKGWLVQDAEQ 319

Query: 350 QSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGAR 171
           QS ILEKHHHYGNVHAVEKL QSIEIWYATSEYL+QEMNPNFRMTDPFNPVHIMSFSGAR
Sbjct: 320 QSLILEKHHHYGNVHAVEKLCQSIEIWYATSEYLQQEMNPNFRMTDPFNPVHIMSFSGAR 379

Query: 170 GNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 3
           GNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT+YIIS YGARKGVVDTA
Sbjct: 380 GNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTKYIISFYGARKGVVDTA 435


>dbj|BBD13783.1| DNA-directed RNA polymerase beta'' chain, partial (chloroplast)
           [Cypripedium japonicum]
          Length = 1436

 Score =  413 bits (1061), Expect = e-131
 Identities = 210/243 (86%), Positives = 220/243 (90%)
 Frame = -3

Query: 731 TRGNSSLAGLTRTIIAIAEFLRESRSRKGSFTITDSNPLSNSTQRNMEVLMAERPTQVFH 552
           TRGNS L   T   I I+EFL ESR RKGSF ITDS PL N TQ+NMEVLMAER   VFH
Sbjct: 7   TRGNSGLPNFTG--IKISEFLCESRLRKGSFRITDSGPLWNLTQQNMEVLMAERADLVFH 64

Query: 551 NKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASISLGIDDLLTIPSKRW 372
           NK+IDGTAMKRLISR IDH+G+ YTSHILDQVKTLGF++ATA SISLGIDDLLTIPSK W
Sbjct: 65  NKVIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQRATATSISLGIDDLLTIPSKGW 124

Query: 371 LVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHI 192
           LVQDAEQQSF+LEK+HHYGNVH VEKLRQSIEIWYATSEYLRQEMNPNFRMTDP NPVH+
Sbjct: 125 LVQDAEQQSFLLEKNHHYGNVHVVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPSNPVHL 184

Query: 191 MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVV 12
           MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVV
Sbjct: 185 MSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVV 244

Query: 11  DTA 3
           DTA
Sbjct: 245 DTA 247


>gb|PRQ15716.1| putative DNA-directed RNA polymerase (chloroplast) [Rosa chinensis]
          Length = 2129

 Score =  418 bits (1074), Expect = e-130
 Identities = 208/227 (91%), Positives = 215/227 (94%)
 Frame = -3

Query: 683  IAEFLRESRSRKGSFTITDSNPLSNSTQRNMEVLMAERPTQVFHNKMIDGTAMKRLISRF 504
            + EFL ESRSRKGSF ITDSNPLSN TQRN EVLMAER + VFHNK+IDGTA+KRLISR 
Sbjct: 712  VPEFLCESRSRKGSFPITDSNPLSNPTQRNREVLMAERASLVFHNKVIDGTAIKRLISRL 771

Query: 503  IDHYGIGYTSHILDQVKTLGFRQATAASISLGIDDLLTIPSKRWLVQDAEQQSFILEKHH 324
            IDH+G+ YTSHILDQVKTLGFRQATA SISLGIDDLLTIPSK WLVQDAEQQS ILEKHH
Sbjct: 772  IDHFGMAYTSHILDQVKTLGFRQATATSISLGIDDLLTIPSKGWLVQDAEQQSLILEKHH 831

Query: 323  HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQL 144
            HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVH+MSFSGARGNASQVHQL
Sbjct: 832  HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHMMSFSGARGNASQVHQL 891

Query: 143  VGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 3
            VGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA
Sbjct: 892  VGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 938



 Score = 58.5 bits (140), Expect = 7e-06
 Identities = 27/31 (87%), Positives = 30/31 (96%)
 Frame = -1

Query: 850 SIKKEILYIYIRTTLGHISLYREIEEAIQGF 758
           SIKKE+L IY+RTT+GHISLYREIEEAIQGF
Sbjct: 671 SIKKEVLCIYVRTTVGHISLYREIEEAIQGF 701


>ref|YP_009341767.1| RNA polymerase beta' subunit (chloroplast) [Castanopsis concinna]
 gb|ALN96489.1| RNA polymerase beta' subunit (chloroplast) [Castanopsis concinna]
          Length = 1429

 Score =  412 bits (1058), Expect = e-130
 Identities = 206/232 (88%), Positives = 216/232 (93%)
 Frame = -3

Query: 698 RTIIAIAEFLRESRSRKGSFTITDSNPLSNSTQRNMEVLMAERPTQVFHNKMIDGTAMKR 519
           RTI+   EFLRE +SRKG F I DSNPLSN TQRNMEVLMAER   VFHNK+IDGTA+KR
Sbjct: 2   RTIVP--EFLREFKSRKGRFPIIDSNPLSNPTQRNMEVLMAERANTVFHNKVIDGTAIKR 59

Query: 518 LISRFIDHYGIGYTSHILDQVKTLGFRQATAASISLGIDDLLTIPSKRWLVQDAEQQSFI 339
           LISR IDH+G+ YTSHILDQVKTLGF+QATA SISLGIDDLLTIPSK WLVQDAEQQS +
Sbjct: 60  LISRLIDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSLV 119

Query: 338 LEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNAS 159
           LEKHH+YGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVH+MSFSGARGNAS
Sbjct: 120 LEKHHYYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHMMSFSGARGNAS 179

Query: 158 QVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 3
           QVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA
Sbjct: 180 QVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 231


>gb|OTF84746.1| putative RNA polymerase, beta subunit, protrusion (plastid)
            [Helianthus annuus]
          Length = 3147

 Score =  397 bits (1020), Expect(2) = e-129
 Identities = 196/200 (98%), Positives = 198/200 (99%)
 Frame = -3

Query: 602  QRNMEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAA 423
            QRNMEVLMAERPTQVFHNK+IDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAA
Sbjct: 1783 QRNMEVLMAERPTQVFHNKVIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAA 1842

Query: 422  SISLGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQ 243
            SISLGIDDLLTIPSKRWLVQDAEQQS +LEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQ
Sbjct: 1843 SISLGIDDLLTIPSKRWLVQDAEQQSVLLEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQ 1902

Query: 242  EMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGL 63
            EM PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGL
Sbjct: 1903 EMTPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGL 1962

Query: 62   SLTEYIISCYGARKGVVDTA 3
            SLTEYIISCYGARKGVVDTA
Sbjct: 1963 SLTEYIISCYGARKGVVDTA 1982



 Score = 93.6 bits (231), Expect(2) = e-129
 Identities = 45/48 (93%), Positives = 45/48 (93%)
 Frame = -1

Query: 850  SIKKEILYIYIRTTLGHISLYREIEEAIQGFWQGCCNSMLPGGIRVSP 707
            SIKKEILYIYIRTTLGHISLYREIEEAIQGFWQGC NSMLP  IRVSP
Sbjct: 1734 SIKKEILYIYIRTTLGHISLYREIEEAIQGFWQGCYNSMLPARIRVSP 1781


>ref|YP_009471533.1| RNA polymerase beta'' subunit (chloroplast) [Firmiana major]
 gb|AVH80336.1| RNA polymerase beta'' subunit (chloroplast) [Firmiana major]
          Length = 1400

 Score =  406 bits (1044), Expect = e-128
 Identities = 203/227 (89%), Positives = 212/227 (93%)
 Frame = -3

Query: 683 IAEFLRESRSRKGSFTITDSNPLSNSTQRNMEVLMAERPTQVFHNKMIDGTAMKRLISRF 504
           + +FLR+SRSRKGSF I DSNPLS STQRN  VLMAER   VFHNK+IDGTA+KRLISR 
Sbjct: 1   MTDFLRKSRSRKGSFPIIDSNPLSKSTQRNKGVLMAERANLVFHNKVIDGTAIKRLISRL 60

Query: 503 IDHYGIGYTSHILDQVKTLGFRQATAASISLGIDDLLTIPSKRWLVQDAEQQSFILEKHH 324
           IDH+G+ YTSHILDQVKTLGF+QATA SISLGIDDLLTIPSK WLVQDAEQQS ILEKHH
Sbjct: 61  IDHFGMAYTSHILDQVKTLGFQQATATSISLGIDDLLTIPSKGWLVQDAEQQSSILEKHH 120

Query: 323 HYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQL 144
           H+GNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTD FNPVHIMSFSGARGNASQVHQL
Sbjct: 121 HFGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDSFNPVHIMSFSGARGNASQVHQL 180

Query: 143 VGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 3
           VGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA
Sbjct: 181 VGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTA 227


>ref|YP_009111726.1| RNA polymerase beta subunit-2 (chloroplast) [Artemisia montana]
 gb|AHJ61134.1| RNA polymerase beta subunit-2 (chloroplast) [Artemisia montana]
          Length = 1380

 Score =  398 bits (1023), Expect = e-125
 Identities = 197/197 (100%), Positives = 197/197 (100%)
 Frame = -3

Query: 593 MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS 414
           MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS
Sbjct: 1   MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS 60

Query: 413 LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 234
           LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 233 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 54
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 53  EYIISCYGARKGVVDTA 3
           EYIISCYGARKGVVDTA
Sbjct: 181 EYIISCYGARKGVVDTA 197


>gb|AJE74911.1| RNA polymerase beta'' subunit (plastid) [Achillea millefolium]
          Length = 1381

 Score =  398 bits (1023), Expect = e-125
 Identities = 197/197 (100%), Positives = 197/197 (100%)
 Frame = -3

Query: 593 MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS 414
           MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS
Sbjct: 1   MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS 60

Query: 413 LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 234
           LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 233 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 54
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 53  EYIISCYGARKGVVDTA 3
           EYIISCYGARKGVVDTA
Sbjct: 181 EYIISCYGARKGVVDTA 197


>gb|AVI25898.1| RNA polymerase beta subunit-2 (chloroplast) [Chrysanthemum boreale]
          Length = 1383

 Score =  398 bits (1023), Expect = e-125
 Identities = 197/197 (100%), Positives = 197/197 (100%)
 Frame = -3

Query: 593 MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS 414
           MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS
Sbjct: 1   MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS 60

Query: 413 LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 234
           LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 233 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 54
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 53  EYIISCYGARKGVVDTA 3
           EYIISCYGARKGVVDTA
Sbjct: 181 EYIISCYGARKGVVDTA 197


>gb|ATL16862.1| RNA polymerase beta'' subunit (chloroplast) [Chrysanthemum
           zawadskii var. latilobum]
          Length = 1383

 Score =  398 bits (1023), Expect = e-125
 Identities = 197/197 (100%), Positives = 197/197 (100%)
 Frame = -3

Query: 593 MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS 414
           MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS
Sbjct: 1   MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS 60

Query: 413 LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 234
           LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 233 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 54
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 53  EYIISCYGARKGVVDTA 3
           EYIISCYGARKGVVDTA
Sbjct: 181 EYIISCYGARKGVVDTA 197


>gb|ATL16925.1| RNA polymerase beta'' subunit (chloroplast) [Chrysanthemum
           zawadskii subsp. coreanum]
          Length = 1383

 Score =  398 bits (1023), Expect = e-125
 Identities = 197/197 (100%), Positives = 197/197 (100%)
 Frame = -3

Query: 593 MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS 414
           MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS
Sbjct: 1   MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS 60

Query: 413 LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 234
           LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 233 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 54
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 53  EYIISCYGARKGVVDTA 3
           EYIISCYGARKGVVDTA
Sbjct: 181 EYIISCYGARKGVVDTA 197


>ref|YP_009365230.1| RNA polymerase beta'' subunit (plastid) [Artemisia annua]
 gb|ARJ60744.1| RNA polymerase beta'' subunit (plastid) [Artemisia annua]
          Length = 1383

 Score =  398 bits (1023), Expect = e-125
 Identities = 197/197 (100%), Positives = 197/197 (100%)
 Frame = -3

Query: 593 MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS 414
           MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS
Sbjct: 1   MEVLMAERPTQVFHNKMIDGTAMKRLISRFIDHYGIGYTSHILDQVKTLGFRQATAASIS 60

Query: 413 LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 234
           LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
Sbjct: 61  LGIDDLLTIPSKRWLVQDAEQQSFILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN 120

Query: 233 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 54
           PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
Sbjct: 121 PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT 180

Query: 53  EYIISCYGARKGVVDTA 3
           EYIISCYGARKGVVDTA
Sbjct: 181 EYIISCYGARKGVVDTA 197