BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00024391
         (1906 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKA63792.1| Retrovirus-related Pol polyprotein from transposo...   583   0.0  
ref|XP_018831391.1| PREDICTED: uncharacterized protein LOC108999...   603   0.0  
ref|XP_022001070.1| uncharacterized protein LOC110898578 [Helian...   561   0.0  
ref|XP_020197777.1| uncharacterized protein LOC109783596 [Aegilo...   592   0.0  
ref|XP_019161203.1| PREDICTED: uncharacterized protein LOC109157...   583   0.0  
dbj|BAH94406.1| Os08g0544300 [Oryza sativa Japonica Group]            568   0.0  
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   569   0.0  
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   580   0.0  
gb|AUT19993.1| orf490 (mitochondrion) [Oryza coarctata]               547   0.0  
ref|XP_019173195.1| PREDICTED: uncharacterized protein LOC109168...   568   0.0  
ref|YP_009241997.1| hypothetical protein (mitochondrion) [Oryza ...   542   0.0  
ref|YP_514636.1| hypothetical protein OrsaiPp07 (mitochondrion) ...   541   0.0  
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   565   0.0  
gb|PNX98781.1| hypothetical protein L195_g022038 [Trifolium prat...   548   0.0  
emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]   562   0.0  
gb|PNX97009.1| retrovirus-related Pol polyprotein from transposo...   547   0.0  
ref|YP_002000554.1| orf490 (mitochondrion) [Oryza sativa Japonic...   538   0.0  
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  567   0.0  
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   567   0.0  
gb|PNY03462.1| retrovirus-related Pol polyprotein from transposo...   546   0.0  

>gb|PKA63792.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Apostasia shenzhenica]
          Length = 500

 Score =  583 bits (1504), Expect = 0.0
 Identities = 291/506 (57%), Positives = 360/506 (71%)
 Frame = +3

Query: 267  MKEEYDALVKNGTWSLVPRASKSNVVDGKWVYRLKRDKHGAITRYKARFVAKGFRQQPGI 446
            M  E+DAL++NGTW LVPR    NV+  KWVY+LK    G+I R+KAR VAKG+ Q+PG+
Sbjct: 1    MATEFDALLRNGTWDLVPRNQSMNVIGCKWVYKLKHRADGSIERHKARLVAKGYHQEPGL 60

Query: 447  DFHETFSPVVKSTTIRVVLSLAVTNNWPLRQLDVQNAFLHGHLKEQVYMKQPPGFIDPQR 626
            D+ +TFSPV+K TT+R++LS+A+++NW +RQLDV NAFLHG L+E VYM+QPPGF  PQ 
Sbjct: 61   DYIDTFSPVIKITTVRLLLSIAISSNWNIRQLDVSNAFLHGSLQETVYMEQPPGFTHPQY 120

Query: 627  PNHVCLLHKSLYGLKQAPRAWFERLSKALYDLGFKGSKTDPSLFIYSRGPKLLYILVYVD 806
            P+HVC L KSLYGLKQAPRAWF RL   L+   F GSKTD SLF        +YIL+YVD
Sbjct: 121  PSHVCHLRKSLYGLKQAPRAWFNRLGGWLHTQDFLGSKTDTSLFYRCTSSSKVYILIYVD 180

Query: 807  DIIVTGNDKGTIDTIICQLGSAFALKDLGPLNYFLGIEIVPHVSGVLLSQKKYILELLQK 986
            DI++TG+D   I  II  L   F+++DLG  +YFLGIE+  H  G LLSQ KYIL LLQ+
Sbjct: 181  DILITGDDPKAITAIIQSLSKEFSIRDLGYAHYFLGIELHSHSKGSLLSQSKYILGLLQR 240

Query: 987  AGLSNCNXXXXXXXXXXXXXXXXXXAFFNPVKYRQVVGALQYVTLSRPDIAFAVNKVCQY 1166
            A +                         +P  YR +VGALQYVT++RPDI FAV++ CQ+
Sbjct: 241  AKMDGAR---PISTPISTLSIKNSPTMNDPSLYRSIVGALQYVTITRPDITFAVSRACQF 297

Query: 1167 MHAPTENHWSAVKRILRYLHGTVEYGMLIRRSSGSTLQAFTDVLWKGSPDTSLEAFSDAD 1346
            MHAPTE+HW+ VKRILRYL GT+ YG+   R S  TL A                FSDAD
Sbjct: 298  MHAPTEDHWTGVKRILRYLKGTILYGLQFHRHSSHTLHA----------------FSDAD 341

Query: 1347 WAGDSDDRRSTGGFAIYLGSNLISWTARKQRTVSRSSTEAEYKALADTVAELTWLQALLH 1526
            WAG   DRRSTGGFAI+LG+NLISW+++KQ TVSRSSTEAEYKA+A+  AEL WLQ+LL+
Sbjct: 342  WAGSPTDRRSTGGFAIFLGNNLISWSSKKQPTVSRSSTEAEYKAIANATAELVWLQSLLN 401

Query: 1527 ELGIRSSSTPILWCDNLGATYLSANPIFHARTKHVEIDYHFVREKVAQGDLRVQHISTHD 1706
            EL +  + TP LWCDN+GATYL+ANP+FHARTKHVEID+HFVRE+VA   L V +IST D
Sbjct: 402  ELHLPVTGTPTLWCDNIGATYLTANPVFHARTKHVEIDFHFVRERVASHQLTVSYISTKD 461

Query: 1707 QIADIFTKPLPTPRFLFLRSKLQVVA 1784
            Q+ADIFTKPL   RF  L + L V++
Sbjct: 462  QLADIFTKPLSRQRFQMLCTNLHVIS 487


>ref|XP_018831391.1| PREDICTED: uncharacterized protein LOC108999052 [Juglans regia]
          Length = 1125

 Score =  603 bits (1556), Expect = 0.0
 Identities = 299/542 (55%), Positives = 381/542 (70%), Gaps = 5/542 (0%)
 Frame = +3

Query: 162  VPYNPSANHATVLPTTI-----TEPTSFTVANNSPEWRQAMKEEYDALVKNGTWSLVPRA 326
            VP+ PS + +  L T+       EPTS+T A   PEWR AM+ E+ AL+ N TW LVP +
Sbjct: 530  VPW-PSTHQSMSLTTSTHTSVPEEPTSYTEAKKFPEWRLAMQTEFHALLHNHTWDLVPPS 588

Query: 327  SKSNVVDGKWVYRLKRDKHGAITRYKARFVAKGFRQQPGIDFHETFSPVVKSTTIRVVLS 506
            +  NV+  KW+ + KR+  G + R KAR VAKGF QQPG+D+ ETFSPVVK TTIRV+LS
Sbjct: 589  ASYNVLGPKWILKTKRNADGTLERRKARLVAKGFHQQPGVDYAETFSPVVKPTTIRVILS 648

Query: 507  LAVTNNWPLRQLDVQNAFLHGHLKEQVYMKQPPGFIDPQRPNHVCLLHKSLYGLKQAPRA 686
            LAV++NW L+QLD+QNAFLHG L+E VYM+QP GF+ P+ P+HVC L K++YGLKQAPRA
Sbjct: 649  LAVSSNWSLQQLDIQNAFLHGELEEAVYMQQPTGFVHPEYPSHVCKLRKAIYGLKQAPRA 708

Query: 687  WFERLSKALYDLGFKGSKTDPSLFIYSRGPKLLYILVYVDDIIVTGNDKGTIDTIICQLG 866
            WF +LS  L+ LGF+ SK+D SLF+Y     ++++L+YVDDIIVTG+D   I   I  LG
Sbjct: 709  WFSKLSNKLFSLGFQESKSDTSLFVYKNSSHVMFVLIYVDDIIVTGSDSNLISEFITALG 768

Query: 867  SAFALKDLGPLNYFLGIEIVPHVSGVLLSQKKYILELLQKAGLSNCNXXXXXXXXXXXXX 1046
            ++F +K LG L+YFLGIEI  +  G+ LSQ KYIL+LLQK  + N               
Sbjct: 769  TSFPVKHLGKLHYFLGIEICQNSQGLFLSQSKYILDLLQKTNMQNAKPVSTPMSVTTKLS 828

Query: 1047 XXXXXAFFNPVKYRQVVGALQYVTLSRPDIAFAVNKVCQYMHAPTENHWSAVKRILRYLH 1226
                 +F +P+ YR VVG+LQY++ +RPDI+FAVNKVCQYMH PT +HW AVKRILRYL 
Sbjct: 829  AFDSSSFEDPLTYRSVVGSLQYLSFTRPDISFAVNKVCQYMHNPTNSHWQAVKRILRYLR 888

Query: 1227 GTVEYGMLIRRSSGSTLQAFTDVLWKGSPDTSLEAFSDADWAGDSDDRRSTGGFAIYLGS 1406
             T   G+ + ++S   + A                FSDADWAG  DDR+STGGF ++LGS
Sbjct: 889  LTSHLGLFLSKTSPCNISA----------------FSDADWAGCPDDRKSTGGFCVFLGS 932

Query: 1407 NLISWTARKQRTVSRSSTEAEYKALADTVAELTWLQALLHELGIRSSSTPILWCDNLGAT 1586
            NL+SW ++KQ T++RSSTEAEYKA+A+T  E+ W+Q+LL ELGI     P LWCDNLGAT
Sbjct: 933  NLVSWGSKKQPTIARSSTEAEYKAVANTTCEVLWIQSLLRELGIFLQDPPKLWCDNLGAT 992

Query: 1587 YLSANPIFHARTKHVEIDYHFVREKVAQGDLRVQHISTHDQIADIFTKPLPTPRFLFLRS 1766
            YL+ NPI HARTKHVE+DYHFVR++VA   L V  +S+ DQ+ADI TKPL T RF FLRS
Sbjct: 993  YLTVNPILHARTKHVELDYHFVRDRVAAKTLTVSFLSSKDQLADILTKPLSTARFQFLRS 1052

Query: 1767 KL 1772
             L
Sbjct: 1053 SL 1054


>ref|XP_022001070.1| uncharacterized protein LOC110898578 [Helianthus annuus]
          Length = 408

 Score =  561 bits (1447), Expect = 0.0
 Identities = 279/411 (67%), Positives = 327/411 (79%)
 Frame = +3

Query: 558  FLHGHLKEQVYMKQPPGFIDPQRPNHVCLLHKSLYGLKQAPRAWFERLSKALYDLGFKGS 737
            FLHG LKE VY++QPPGF+DPQ+P+HVCLLHKSLYGLKQAPRAWFERLS  L  LGFKGS
Sbjct: 3    FLHGDLKETVYLQQPPGFVDPQKPDHVCLLHKSLYGLKQAPRAWFERLSSTLLALGFKGS 62

Query: 738  KTDPSLFIYSRGPKLLYILVYVDDIIVTGNDKGTIDTIICQLGSAFALKDLGPLNYFLGI 917
            +TDPSLFIYS    LLY+LVYVDDII+TGN+   I+ ++  L S+FA++++G L YFLGI
Sbjct: 63   ETDPSLFIYSHQGTLLYMLVYVDDIILTGNNSQAIERVVTSLSSSFAVQEMGTLAYFLGI 122

Query: 918  EIVPHVSGVLLSQKKYILELLQKAGLSNCNXXXXXXXXXXXXXXXXXXAFFNPVKYRQVV 1097
            E++P  + +LLSQ+KYI ELL++ GLS+                     F NPV+YRQ+V
Sbjct: 123  EVIPKGTDLLLSQRKYIRELLERDGLSHAKPVPSPMCTTTHLTNGDSPLFDNPVRYRQIV 182

Query: 1098 GALQYVTLSRPDIAFAVNKVCQYMHAPTENHWSAVKRILRYLHGTVEYGMLIRRSSGSTL 1277
            GALQYVTLSRPDIAFAVNKVCQ+MH+PTENHWS VKRILRYL GT  + +L+ R SGS L
Sbjct: 183  GALQYVTLSRPDIAFAVNKVCQFMHSPTENHWSTVKRILRYLQGTSGHDLLLSRKSGSHL 242

Query: 1278 QAFTDVLWKGSPDTSLEAFSDADWAGDSDDRRSTGGFAIYLGSNLISWTARKQRTVSRSS 1457
             A+TD         SL A+SDADWAG  DDRRSTGGFAIYLGSNL+S +ARKQ+TVSRSS
Sbjct: 243  HAYTDATCP-----SLRAYSDADWAGCPDDRRSTGGFAIYLGSNLVSLSARKQKTVSRSS 297

Query: 1458 TEAEYKALADTVAELTWLQALLHELGIRSSSTPILWCDNLGATYLSANPIFHARTKHVEI 1637
            TE+EYKALADTVAELTWL+ LL EL +  S+ P LWCDNLGATYLSANP+FHARTKHVE+
Sbjct: 298  TESEYKALADTVAELTWLETLLRELKVPMSTVPTLWCDNLGATYLSANPVFHARTKHVEV 357

Query: 1638 DYHFVREKVAQGDLRVQHISTHDQIADIFTKPLPTPRFLFLRSKLQVVARP 1790
            D++FVREKV Q  L VQ IST+DQIAD+FTKPLP+ RFL LRSKLQV  RP
Sbjct: 358  DFYFVREKVTQKKLYVQFISTNDQIADVFTKPLPSQRFLTLRSKLQVAPRP 408


>ref|XP_020197777.1| uncharacterized protein LOC109783596 [Aegilops tauschii subsp.
            tauschii]
          Length = 1355

 Score =  592 bits (1527), Expect = 0.0
 Identities = 284/525 (54%), Positives = 379/525 (72%), Gaps = 2/525 (0%)
 Frame = +3

Query: 213  TEPTSFTVANNSPEWRQAMKEEYDALVKNGTWSLVPRASKSNVVDGKWVYRLKRDKHGAI 392
            +EP ++  A + P WR+AM++EY AL++N TW+LVP   + NV+D KWV+++K+   G+I
Sbjct: 841  SEPCTYQAALSIPHWREAMEQEYHALLRNKTWTLVPPPPRVNVIDSKWVFKVKKHSDGSI 900

Query: 393  TRYKARFVAKGFRQQPGIDFHETFSPVVKSTTIRVVLSLAVTNNWPLRQLDVQNAFLHGH 572
             RYKAR VA+GFRQ+ G+D+ +TFSPVVK TTIR++LSLA+T  W LRQLDVQNAFLHG 
Sbjct: 901  ERYKARLVARGFRQRYGLDYEDTFSPVVKPTTIRLLLSLAITRGWSLRQLDVQNAFLHGV 960

Query: 573  LKEQVYMKQPPGFIDPQRPNHVCLLHKSLYGLKQAPRAWFERLSKALYDLGFKGSKTDPS 752
            L+E+VYM+QPPGF DP RP+++C L K+ YGLKQAPRAW  RL+ AL   GF  S  D S
Sbjct: 961  LEEEVYMRQPPGFFDPDRPDYLCRLTKAFYGLKQAPRAWHARLATALRAHGFASSAADSS 1020

Query: 753  LFIYSRGPKLLYILVYVDDIIVTGNDKGTIDTIICQLGSAFALKDLGPLNYFLGIEIVPH 932
            LF+  R    +Y+LVYVDDII+  + +     ++  LG+ FA+KDLG L+YFLG+E+   
Sbjct: 1021 LFLLQRPEVTMYLLVYVDDIILVSSSQSAAAALVRSLGADFAVKDLGHLHYFLGVEVASV 1080

Query: 933  VSGVLLSQKKYILELLQKAGLSNCNXXXXXXXXXXXXXXXXXXAFFNPV--KYRQVVGAL 1106
             +G++++QKKY L+LLQ+AG+  C                      + V  +YR +VG L
Sbjct: 1081 SNGLVMTQKKYSLDLLQRAGMLKCKPTTTPMSATDRITAADGDLLPSAVATQYRSIVGGL 1140

Query: 1107 QYVTLSRPDIAFAVNKVCQYMHAPTENHWSAVKRILRYLHGTVEYGMLIRRSSGSTLQAF 1286
            QY+T++RPDI+FAVN+VCQY+ AP + HWSAVKRILRY+  T+ YG+ IR +    + A+
Sbjct: 1141 QYLTITRPDISFAVNRVCQYLQAPRDTHWSAVKRILRYIRFTLSYGLHIRPNPSGVISAY 1200

Query: 1287 TDVLWKGSPDTSLEAFSDADWAGDSDDRRSTGGFAIYLGSNLISWTARKQRTVSRSSTEA 1466
                            SDADWAG  DDRRSTGG+A++ GS LI+W+ARKQ TVSRSSTEA
Sbjct: 1201 ----------------SDADWAGSPDDRRSTGGYAVFFGSTLIAWSARKQATVSRSSTEA 1244

Query: 1467 EYKALADTVAELTWLQALLHELGIRSSSTPILWCDNLGATYLSANPIFHARTKHVEIDYH 1646
            EYK +A+  AE+ W+Q+LL ELGI  S +PILWCDN+GATYLSANP+FHARTKH+E+DYH
Sbjct: 1245 EYKVVANATAEIIWIQSLLQELGISQSQSPILWCDNIGATYLSANPVFHARTKHIEVDYH 1304

Query: 1647 FVREKVAQGDLRVQHISTHDQIADIFTKPLPTPRFLFLRSKLQVV 1781
            FVRE+V+Q  L+++ IS+ DQ+ADIFTKPLP P+F   R  L ++
Sbjct: 1305 FVRERVSQKQLQIKFISSKDQLADIFTKPLPLPQFETCRRNLTLL 1349


>ref|XP_019161203.1| PREDICTED: uncharacterized protein LOC109157818 [Ipomoea nil]
          Length = 1118

 Score =  583 bits (1503), Expect = 0.0
 Identities = 285/529 (53%), Positives = 378/529 (71%)
 Frame = +3

Query: 204  TTITEPTSFTVANNSPEWRQAMKEEYDALVKNGTWSLVPRASKSNVVDGKWVYRLKRDKH 383
            TT  +PT ++ A   PEWR AM +E++A + NGTW LVP  +  N++  KWV+R KR   
Sbjct: 606  TTTIDPTCYSQAVGHPEWRDAMDQEFNAFLHNGTWRLVPPKANMNIIGCKWVFRTKRTAD 665

Query: 384  GAITRYKARFVAKGFRQQPGIDFHETFSPVVKSTTIRVVLSLAVTNNWPLRQLDVQNAFL 563
            G+I RYKAR VAKGF Q  G DF +TFSPVVK TT+R++LSLAV+++W LRQLDV NAFL
Sbjct: 666  GSIERYKARLVAKGFNQVAGEDFFDTFSPVVKPTTVRLLLSLAVSSSWTLRQLDVHNAFL 725

Query: 564  HGHLKEQVYMKQPPGFIDPQRPNHVCLLHKSLYGLKQAPRAWFERLSKALYDLGFKGSKT 743
            +GHL E +YMK PPG+ D   P++VC L +SLYGLKQAPRAWF+RL   L   GF+ SKT
Sbjct: 726  NGHLAETMYMKPPPGYEDSSHPDYVCHLQRSLYGLKQAPRAWFKRLHDFLISTGFQPSKT 785

Query: 744  DPSLFIYSRGPKLLYILVYVDDIIVTGNDKGTIDTIICQLGSAFALKDLGPLNYFLGIEI 923
            D SLF Y+ G   +++LVYVDDII+  ND   +D ++ +L +AF ++DLG   +FL IE 
Sbjct: 786  DVSLFHYTDGQSRVFLLVYVDDIIMMENDTPLLDVLLRRLSTAFKIRDLGTPGFFLSIET 845

Query: 924  VPHVSGVLLSQKKYILELLQKAGLSNCNXXXXXXXXXXXXXXXXXXAFFNPVKYRQVVGA 1103
            +    G LLSQK+Y++++L +AG+S+C                    + NP +YR++VGA
Sbjct: 846  LALNGGYLLSQKRYMVDILNRAGMSDCK-PLTTPAAVSTSATSASQPYDNPTQYRRIVGA 904

Query: 1104 LQYVTLSRPDIAFAVNKVCQYMHAPTENHWSAVKRILRYLHGTVEYGMLIRRSSGSTLQA 1283
            LQY+T++RPD++FAVN++ Q+MH+PT+ H   VK +LRY+ GT+ +G+ +  S+ S    
Sbjct: 905  LQYLTITRPDLSFAVNRLWQFMHSPTDEHLGLVKCVLRYVKGTLHFGLCLSPSTSS---- 960

Query: 1284 FTDVLWKGSPDTSLEAFSDADWAGDSDDRRSTGGFAIYLGSNLISWTARKQRTVSRSSTE 1463
                        ++ A+SD+DWAG   DR+ST G+A++LG+NLISW +RKQRTV+RSSTE
Sbjct: 961  ------------AIHAYSDSDWAGCPLDRKSTSGYAVFLGNNLISWLSRKQRTVARSSTE 1008

Query: 1464 AEYKALADTVAELTWLQALLHELGIRSSSTPILWCDNLGATYLSANPIFHARTKHVEIDY 1643
            AEYKALAD  AE+TW+ +LL ELG+ S   P LWCDNLGATYL ANP+FHARTKHVEI++
Sbjct: 1009 AEYKALADVSAEVTWIVSLLRELGLHSGQPPTLWCDNLGATYLCANPVFHARTKHVEINF 1068

Query: 1644 HFVREKVAQGDLRVQHISTHDQIADIFTKPLPTPRFLFLRSKLQVVARP 1790
            HFVR+KVA G+  V  +ST DQ+ADIFTKPLP PRF  LR+KL VVA P
Sbjct: 1069 HFVRDKVASGEFAVNFVSTKDQLADIFTKPLPGPRFSALRTKLNVVAHP 1117


>dbj|BAH94406.1| Os08g0544300 [Oryza sativa Japonica Group]
          Length = 821

 Score =  568 bits (1463), Expect = 0.0
 Identities = 283/527 (53%), Positives = 365/527 (69%), Gaps = 2/527 (0%)
 Frame = +3

Query: 204  TTITEPTSFTVANNSPEWRQAMKEEYDALVKNGTWSLVPRASKSNVVDGKWVYRLKRDKH 383
            T+  EP S   A N+  W++AM  EY AL++N TW LVP     NV+D KWVY++KR   
Sbjct: 302  TSSGEPQSLEEAVNNKHWKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKAD 361

Query: 384  GAITRYKARFVAKGFRQQPGIDFHETFSPVVKSTTIRVVLSLAVTNNWPLRQLDVQNAFL 563
            G++ RYKAR VAKGF+Q+ GID+ +TFSPVVK+ TIR+VLSLAV+  W LRQLDV+NAFL
Sbjct: 362  GSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFL 421

Query: 564  HGHLKEQVYMKQPPGFIDPQRPNHVCLLHKSLYGLKQAPRAWFERLSKALYDLGFKGSKT 743
            HG L+E+VYM+QPPG+     PN+VC L K+LYGLKQAPRAW+ RLS  L +LGF  SK 
Sbjct: 422  HGVLEEEVYMEQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKA 481

Query: 744  DPSLFIYSRGPKLLYILVYVDDIIVTGNDKGTIDTIICQLGSAFALKDLGPLNYFLGIEI 923
            D SLF Y +G   +++L+YVDDII+  +      T++ +L   FALKDLG L+YFLGIE+
Sbjct: 482  DTSLFFYKKGQVSIFLLIYVDDIIMASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEV 541

Query: 924  VPHVSGVLLSQKKYILELLQKAGLSNCNXXXXXXXXXXXXXXXXXXAF--FNPVKYRQVV 1097
                 G++LSQ+KY  +LL++ G+  C                        +  +YR VV
Sbjct: 542  HKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVV 601

Query: 1098 GALQYVTLSRPDIAFAVNKVCQYMHAPTENHWSAVKRILRYLHGTVEYGMLIRRSSGSTL 1277
            GALQY+TL+RPDI+F++NKVCQ++HAPT  HW+AVKRILRY+  TV+ G+   R      
Sbjct: 602  GALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCR------ 655

Query: 1278 QAFTDVLWKGSPDTSLEAFSDADWAGDSDDRRSTGGFAIYLGSNLISWTARKQRTVSRSS 1457
                      +P   +  FSDADWAG  DDRRSTGGFA++LG NL+SW+ARKQ TVSRSS
Sbjct: 656  ----------NPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARKQATVSRSS 705

Query: 1458 TEAEYKALADTVAELTWLQALLHELGIRSSSTPILWCDNLGATYLSANPIFHARTKHVEI 1637
            TEAEYKALA+  AE+ W+Q LL ELG+ S     LWCDNLGA YLSANPIFHARTKH+E+
Sbjct: 706  TEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGAKYLSANPIFHARTKHIEV 765

Query: 1638 DYHFVREKVAQGDLRVQHISTHDQIADIFTKPLPTPRFLFLRSKLQV 1778
            D+HFVRE+VA+  L + +IST DQ+AD FTK +P  +    ++ L +
Sbjct: 766  DFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQMEMFKNNLNL 812


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 900

 Score =  569 bits (1467), Expect = 0.0
 Identities = 281/528 (53%), Positives = 370/528 (70%), Gaps = 2/528 (0%)
 Frame = +3

Query: 204  TTITEPTSFTVANNSPEWRQAMKEEYDALVKNGTWSLVPRASKSNVVDGKWVYRLKRDKH 383
            T   EP+S   A +S  W+QAM +E+ AL+ N TW LVP     N++D KWVY++K+   
Sbjct: 379  TETGEPSSLQEALSSANWKQAMDKEFSALLHNKTWHLVPPVKGKNIIDSKWVYKIKKKAD 438

Query: 384  GAITRYKARFVAKGFRQQPGIDFHETFSPVVKSTTIRVVLSLAVTNNWPLRQLDVQNAFL 563
            G I RYKAR VAKGF+Q+ GID+ +TFSPVVK+ TIR+VLS+A++  W LRQLDVQNAFL
Sbjct: 439  GTIDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRLVLSIAMSQGWSLRQLDVQNAFL 498

Query: 564  HGHLKEQVYMKQPPGFIDPQRPNHVCLLHKSLYGLKQAPRAWFERLSKALYDLGFKGSKT 743
            HG+L E+VYM+QPPGF D ++P+ +C L K+LYGLKQAPRAW+ RLSK L +LGF  SK 
Sbjct: 499  HGYLDEEVYMRQPPGFEDARQPHFLCKLDKALYGLKQAPRAWYSRLSKKLQELGFSSSKA 558

Query: 744  DPSLFIYSRGPKLLYILVYVDDIIVTGNDKGTIDTIICQLGSAFALKDLGPLNYFLGIEI 923
            D SLF Y++G   +++LVYVDDIIV  +    ++ ++  L   FALKDLG L+YFLGIE+
Sbjct: 559  DTSLFFYNKGHHKMFVLVYVDDIIVASSSSPAVNALLKDLEKDFALKDLGDLHYFLGIEV 618

Query: 924  VPHVSGVLLSQKKYILELLQKAGLSNCNXXXXXXXXXXXXXXXXXXAF--FNPVKYRQVV 1097
                  +LLSQ++Y  ELL++  +++C                        +  +YR +V
Sbjct: 619  KRTPQTLLLSQERYTTELLERVNMTSCKPVSTPLSTAEKLSVEIGDELGPSDVTQYRSIV 678

Query: 1098 GALQYVTLSRPDIAFAVNKVCQYMHAPTENHWSAVKRILRYLHGTVEYGMLIRRSSGSTL 1277
            GALQY+TL+RPDI+++VNKVCQ++  PT  HWSAVKRILRYL GT++ G+ I +SS + +
Sbjct: 679  GALQYLTLTRPDISYSVNKVCQFLQTPTTAHWSAVKRILRYLKGTLDLGLKIVKSSSNLV 738

Query: 1278 QAFTDVLWKGSPDTSLEAFSDADWAGDSDDRRSTGGFAIYLGSNLISWTARKQRTVSRSS 1457
             AF+D  W GS D       D    G   DRRSTGGFA++ G NLISW+ARKQ TVSRSS
Sbjct: 739  SAFSDADWAGSVD-------DRRSTGGFADRRSTGGFAVFFGDNLISWSARKQATVSRSS 791

Query: 1458 TEAEYKALADTVAELTWLQALLHELGIRSSSTPILWCDNLGATYLSANPIFHARTKHVEI 1637
            TEAEYKALA+  AE+ W++ LL ELGI   +   LWCDNLGATY++ANP+FHARTKH+E+
Sbjct: 792  TEAEYKALANAAAEIIWVRKLLTELGILHPNAARLWCDNLGATYMTANPVFHARTKHIEV 851

Query: 1638 DYHFVREKVAQGDLRVQHISTHDQIADIFTKPLPTPRFLFLRSKLQVV 1781
            DYHFVRE+VAQ  L +  +S+ DQ+AD FTKP+   + +  R  L +V
Sbjct: 852  DYHFVREQVAQKLLDIHFVSSQDQVADGFTKPISLQQLIGFRHNLNLV 899


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  580 bits (1495), Expect = 0.0
 Identities = 297/528 (56%), Positives = 366/528 (69%), Gaps = 2/528 (0%)
 Frame = +3

Query: 204  TTITEPTSFTVANNSPEWRQAMKEEYDALVKNGTWSLVPRASKSNVVDGKWVYRLKRDKH 383
            T   EPT+   A     W+ AM  EYDALVKN TW LVP     N++  KWVY++KR   
Sbjct: 940  TASGEPTNDLEALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKAD 999

Query: 384  GAITRYKARFVAKGFRQQPGIDFHETFSPVVKSTTIRVVLSLAVTNNWPLRQLDVQNAFL 563
            G + RYKAR VAKGF+Q+ GID+ +TFSPVVK+ TIR++LSLAV+  W LRQLDVQNAFL
Sbjct: 1000 GTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFL 1059

Query: 564  HGHLKEQVYMKQPPGFIDPQRPNHVCLLHKSLYGLKQAPRAWFERLSKALYDLGFKGSKT 743
            HG+L+E+VYM QPPGF DP +P+HVC L K+LYGLKQAPRAWF RLSK L DLGFKGSK 
Sbjct: 1060 HGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKP 1119

Query: 744  DPSLFIYSRGPKLLYILVYVDDIIVTGNDKGTIDTIICQLGSAFALKDLGPLNYFLGIEI 923
            D SLF  ++G   +++LVYVDDIIV  + +     ++  L   FALKDLG L+YFLGIE+
Sbjct: 1120 DTSLFFLNKGDITMFVLVYVDDIIVASSSEKATAALLQDLKGEFALKDLGELHYFLGIEV 1179

Query: 924  VPHVSGVLLSQKKYILELLQKAGLSNCNXXXXXXXXXXXXXXXXXXAF--FNPVKYRQVV 1097
                +G++L+Q KY  +LL+K G+ +C                        +   YR VV
Sbjct: 1180 SKVQNGIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVV 1239

Query: 1098 GALQYVTLSRPDIAFAVNKVCQYMHAPTENHWSAVKRILRYLHGTVEYGMLIRRSSGSTL 1277
            GALQY+TL+RPDIAF+VNKVCQ++HAPT  HW AVKRILRYL      G+ I + SGSTL
Sbjct: 1240 GALQYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEIHK-SGSTL 1298

Query: 1278 QAFTDVLWKGSPDTSLEAFSDADWAGDSDDRRSTGGFAIYLGSNLISWTARKQRTVSRSS 1457
                           +  FSDADWAG  DDRRSTGGFAI+LGSNL+SW ARKQ TVSRSS
Sbjct: 1299 ---------------VSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQATVSRSS 1343

Query: 1458 TEAEYKALADTVAELTWLQALLHELGIRSSSTPILWCDNLGATYLSANPIFHARTKHVEI 1637
            TE+EYKA+A+  AE+ W+Q LL EL I+S     +WCDNLGA YLSANP+FHARTKH+E+
Sbjct: 1344 TESEYKAIANATAEIMWVQTLLAELEIKSPKAAKIWCDNLGAKYLSANPVFHARTKHIEV 1403

Query: 1638 DYHFVREKVAQGDLRVQHISTHDQIADIFTKPLPTPRFLFLRSKLQVV 1781
            DYHFVRE+V+Q  L +  +ST+DQ+AD FTKPL        +S L +V
Sbjct: 1404 DYHFVRERVSQKLLEIDFVSTNDQVADGFTKPLSVRLLENFKSNLNLV 1451


>gb|AUT19993.1| orf490 (mitochondrion) [Oryza coarctata]
          Length = 490

 Score =  547 bits (1410), Expect = 0.0
 Identities = 274/498 (55%), Positives = 349/498 (70%), Gaps = 2/498 (0%)
 Frame = +3

Query: 267  MKEEYDALVKNGTWSLVPRASKSNVVDGKWVYRLKRDKHGAITRYKARFVAKGFRQQPGI 446
            M EEY AL++N TW LVP     N++D KWVY++KR   G I RYKAR VAKGF+Q+ GI
Sbjct: 1    MDEEYGALMRNNTWHLVPATQGRNLIDCKWVYKIKRKADGTIDRYKARLVAKGFKQRYGI 60

Query: 447  DFHETFSPVVKSTTIRVVLSLAVTNNWPLRQLDVQNAFLHGHLKEQVYMKQPPGFIDPQR 626
            D+ ETFSPVVK+ TIR++LSLAV+N W LRQLDVQNAFLHG L+E VYM+QPPG+ D  +
Sbjct: 61   DYEETFSPVVKAATIRLILSLAVSNGWSLRQLDVQNAFLHGVLEEDVYMRQPPGYEDKSK 120

Query: 627  PNHVCLLHKSLYGLKQAPRAWFERLSKALYDLGFKGSKTDPSLFIYSRGPKLLYILVYVD 806
             ++VC L K+LYGLKQAPRAWF RLS  L +LGF+ SK D SLF Y +G   +++L+YVD
Sbjct: 121  LDYVCKLDKALYGLKQAPRAWFSRLSMKLQNLGFQPSKADASLFFYKKGTISIFVLIYVD 180

Query: 807  DIIVTGNDKGTIDTIICQLGSAFALKDLGPLNYFLGIEIVPHVSGVLLSQKKYILELLQK 986
            DIIV  + +     ++  L   FALKDLG L+YFLGIE+     G++L+Q+KY  +LL++
Sbjct: 181  DIIVASSCEKATSALLQDLKEEFALKDLGALHYFLGIEVNKVHDGIILTQEKYATDLLKR 240

Query: 987  AGLSNCNXXXXXXXXXXXXXXXXXXAF--FNPVKYRQVVGALQYVTLSRPDIAFAVNKVC 1160
             G+  C                        +  +YR +VGALQY+TL+RPDIAF VNKVC
Sbjct: 241  VGMHGCKEINTPLSTTDKLLAKEGEPLGAEDSTRYRSIVGALQYLTLTRPDIAFPVNKVC 300

Query: 1161 QYMHAPTENHWSAVKRILRYLHGTVEYGMLIRRSSGSTLQAFTDVLWKGSPDTSLEAFSD 1340
            QY+HAPT  HW+AVKRILRYL G++  G+ I +S  + + A                FSD
Sbjct: 301  QYLHAPTSLHWTAVKRILRYLKGSLGLGLRICKSDSTLVSA----------------FSD 344

Query: 1341 ADWAGDSDDRRSTGGFAIYLGSNLISWTARKQRTVSRSSTEAEYKALADTVAELTWLQAL 1520
            ADWAG  DDR+STGGFA++LG+NLISW ARKQ TVSRSSTEAEYKALA+  AE+  +Q L
Sbjct: 345  ADWAGCPDDRKSTGGFAVFLGANLISWNARKQATVSRSSTEAEYKALANATAEIISVQTL 404

Query: 1521 LHELGIRSSSTPILWCDNLGATYLSANPIFHARTKHVEIDYHFVREKVAQGDLRVQHIST 1700
            L E GI       LWCDN+GATYLSANP+FHARTKH+E+DYHFVRE+V+QG L ++ + +
Sbjct: 405  LKERGIAQPRAACLWCDNIGATYLSANPVFHARTKHIEVDYHFVRERVSQGLLDIRFVPS 464

Query: 1701 HDQIADIFTKPLPTPRFL 1754
             DQ+AD FT   P  +++
Sbjct: 465  GDQVADGFTCNRPRRQYI 482


>ref|XP_019173195.1| PREDICTED: uncharacterized protein LOC109168598 [Ipomoea nil]
          Length = 1144

 Score =  568 bits (1465), Expect = 0.0
 Identities = 283/558 (50%), Positives = 376/558 (67%), Gaps = 8/558 (1%)
 Frame = +3

Query: 141  RQNPKPR--------VPYNPSANHATVLPTTITEPTSFTVANNSPEWRQAMKEEYDALVK 296
            R  P+PR           +  A  A     T  EPT ++ A   PEWR AM  E++AL++
Sbjct: 602  RVQPRPRSHTMELRNTTRSARAGQALAAIVTADEPTCYSQAVAFPEWRAAMDLEFNALLQ 661

Query: 297  NGTWSLVPRASKSNVVDGKWVYRLKRDKHGAITRYKARFVAKGFRQQPGIDFHETFSPVV 476
            N TW LVP     N+V  KWV+R+KR   G++ R+KAR V KGF Q  G DF +TFSPVV
Sbjct: 662  NDTWRLVPCRPGQNIVGCKWVFRVKRMADGSVERHKARLVVKGFNQVVGEDFFDTFSPVV 721

Query: 477  KSTTIRVVLSLAVTNNWPLRQLDVQNAFLHGHLKEQVYMKQPPGFIDPQRPNHVCLLHKS 656
            K TT+ ++L+LAV+  W +RQLDV NAFL+GHL + VYM+QPPG++D Q P HVC+L +S
Sbjct: 722  KPTTVYLLLALAVSRGWTIRQLDVHNAFLNGHLAKTVYMRQPPGYVDEQFPTHVCILQRS 781

Query: 657  LYGLKQAPRAWFERLSKALYDLGFKGSKTDPSLFIYSRGPKLLYILVYVDDIIVTGNDKG 836
            LYGLKQAPRAWF RL   L  +GF+ SKTD SLFIYS+    +Y+LVYVDDI++ G+D  
Sbjct: 782  LYGLKQAPRAWFRRLHDYLLKIGFRSSKTDVSLFIYSKSDCRVYLLVYVDDILIMGSDSA 841

Query: 837  TIDTIICQLGSAFALKDLGPLNYFLGIEIVPHVSGVLLSQKKYILELLQKAGLSNCNXXX 1016
             +  +   L  AF ++DLG   +FLGI+ V     ++LSQ++Y+ ++L++AG+ +C    
Sbjct: 842  LVSALFNHLAGAFKIRDLGAPRFFLGIKTVAVDGALVLSQRRYMSDILRRAGMEDCKPIL 901

Query: 1017 XXXXXXXXXXXXXXXAFFNPVKYRQVVGALQYVTLSRPDIAFAVNKVCQYMHAPTENHWS 1196
                              +P  +R++ GALQY+T+ RPD+++AVN++C+ MHAPT  HW 
Sbjct: 902  TPVSTTKSGFPAESDPLPDPTLFRRLAGALQYLTIIRPDLSYAVNRLCRSMHAPTVAHWI 961

Query: 1197 AVKRILRYLHGTVEYGMLIRRSSGSTLQAFTDVLWKGSPDTSLEAFSDADWAGDSDDRRS 1376
             +KR+LRY+ GT+++G+ I +S                    + AFSD+DWA    D++S
Sbjct: 962  DLKRVLRYVKGTLQFGLRISKSDSLV----------------VHAFSDSDWADCLVDKKS 1005

Query: 1377 TGGFAIYLGSNLISWTARKQRTVSRSSTEAEYKALADTVAELTWLQALLHELGIRSSSTP 1556
            T GF +YLG+NL+SW  RKQ+TV+RSSTEAEYK LAD  AE++WL +LL E+G+R SS P
Sbjct: 1006 TSGFVVYLGNNLVSWVCRKQKTVARSSTEAEYKGLADASAEVSWLVSLLVEMGLRLSSPP 1065

Query: 1557 ILWCDNLGATYLSANPIFHARTKHVEIDYHFVREKVAQGDLRVQHISTHDQIADIFTKPL 1736
             LWCDNLGATYL ANP+FHARTKHVEIDYHFVR+KVA G+L VQ IST DQ+ADIFTK L
Sbjct: 1066 RLWCDNLGATYLCANPVFHARTKHVEIDYHFVRDKVASGNLAVQFISTKDQLADIFTKAL 1125

Query: 1737 PTPRFLFLRSKLQVVARP 1790
             + RF FLR KL VV+ P
Sbjct: 1126 GSSRFSFLRDKLNVVSLP 1143


>ref|YP_009241997.1| hypothetical protein (mitochondrion) [Oryza minuta]
 gb|AMA06715.1| hypothetical protein (mitochondrion) [Oryza minuta]
          Length = 490

 Score =  542 bits (1396), Expect = 0.0
 Identities = 272/498 (54%), Positives = 347/498 (69%), Gaps = 2/498 (0%)
 Frame = +3

Query: 267  MKEEYDALVKNGTWSLVPRASKSNVVDGKWVYRLKRDKHGAITRYKARFVAKGFRQQPGI 446
            M EEY AL++N TW LVP     N++D KWVY++KR   G I RYKAR VAKGF+Q+ GI
Sbjct: 1    MDEEYGALMRNNTWHLVPATQGRNLIDCKWVYKIKRKADGTIDRYKARLVAKGFKQRYGI 60

Query: 447  DFHETFSPVVKSTTIRVVLSLAVTNNWPLRQLDVQNAFLHGHLKEQVYMKQPPGFIDPQR 626
            D+ ETFSPVVK+ TIR++LSLAV+N W LRQLDVQNAFLHG L+E VYM+QPPG+ D  +
Sbjct: 61   DYEETFSPVVKAATIRLILSLAVSNGWSLRQLDVQNAFLHGVLEEDVYMRQPPGYEDKSK 120

Query: 627  PNHVCLLHKSLYGLKQAPRAWFERLSKALYDLGFKGSKTDPSLFIYSRGPKLLYILVYVD 806
             ++VC L K+LYGLKQAPRAWF RLS  L +LGF+ SK D SLF Y +G   +++L+YVD
Sbjct: 121  LDYVCKLDKALYGLKQAPRAWFSRLSMKLQNLGFQPSKADASLFFYKKGTISIFVLIYVD 180

Query: 807  DIIVTGNDKGTIDTIICQLGSAFALKDLGPLNYFLGIEIVPHVSGVLLSQKKYILELLQK 986
            DIIV  + +     ++  L   FALKDLG L+YFLGIE+     G++L+Q+KY  +LL++
Sbjct: 181  DIIVASSCEKATSALLQDLKEEFALKDLGALHYFLGIEVNKVHDGIILTQEKYATDLLKR 240

Query: 987  AGLSNCNXXXXXXXXXXXXXXXXXXAF--FNPVKYRQVVGALQYVTLSRPDIAFAVNKVC 1160
             G+  C                        +  +YR +VGALQY+TL+RPDIAF VNKVC
Sbjct: 241  VGMHGCKEINTPLSTTDKFLAKEGEPLGAEDSTRYRSIVGALQYLTLTRPDIAFPVNKVC 300

Query: 1161 QYMHAPTENHWSAVKRILRYLHGTVEYGMLIRRSSGSTLQAFTDVLWKGSPDTSLEAFSD 1340
            QY+HAPT  HW+AVKRILRYL G++  G+ I +S  + + A                FSD
Sbjct: 301  QYLHAPTSLHWTAVKRILRYLKGSLGLGLRICKSDSTLVSA----------------FSD 344

Query: 1341 ADWAGDSDDRRSTGGFAIYLGSNLISWTARKQRTVSRSSTEAEYKALADTVAELTWLQAL 1520
            ADWAG  DDR+ TGGFA++LG+NLISW ARKQ TVSRSSTEAEYKALA+  AE+  +Q L
Sbjct: 345  ADWAGCPDDRKPTGGFAVFLGANLISWNARKQATVSRSSTEAEYKALANATAEIISVQTL 404

Query: 1521 LHELGIRSSSTPILWCDNLGATYLSANPIFHARTKHVEIDYHFVREKVAQGDLRVQHIST 1700
            L E GI       LWCDN+GAT LSANP+FHARTKH+E+DYHFVRE+V+QG L ++ + +
Sbjct: 405  LKERGIAQPRAACLWCDNIGATSLSANPVFHARTKHIEVDYHFVRERVSQGLLDIRFVPS 464

Query: 1701 HDQIADIFTKPLPTPRFL 1754
             DQ+AD FT   P  +++
Sbjct: 465  GDQVADGFTCNRPRRQYI 482


>ref|YP_514636.1| hypothetical protein OrsaiPp07 (mitochondrion) [Oryza sativa Indica
            Group]
 ref|YP_003433855.1| hypothetical protein OrrupM_p18 (mitochondrion) [Oryza rufipogon]
 gb|AAZ99275.1| hypothetical protein (mitochondrion) [Oryza sativa Indica Group]
 gb|AAZ99329.1| hypothetical protein (mitochondrion) [Oryza sativa Japonica Group]
 gb|AAZ99382.1| hypothetical protein (mitochondrion) [Oryza sativa Japonica Group]
 dbj|BAI67959.1| hypothetical protein (mitochondrion) [Oryza rufipogon]
 dbj|BAI67987.1| hypothetical protein (mitochondrion) [Oryza sativa Indica Group]
 gb|AER12982.1| hypothetical protein (mitochondrion) [Oryza sativa Indica Group]
 gb|AER13050.1| hypothetical protein (mitochondrion) [Oryza sativa Indica Group]
 gb|AEZ03755.1| hypothetical protein (mitochondrion) [Oryza sativa Indica Group]
 gb|AEZ03764.1| hypothetical protein (mitochondrion) [Oryza sativa Indica Group]
 dbj|BAN67511.1| hypothetical protein (mitochondrion) [Oryza rufipogon]
 dbj|BAN67513.1| hypothetical protein (mitochondrion) [Oryza rufipogon]
 dbj|BAV53152.1| hypothetical protein (mitochondrion) [Oryza sativa Indica Group]
          Length = 490

 Score =  541 bits (1393), Expect = 0.0
 Identities = 272/498 (54%), Positives = 347/498 (69%), Gaps = 2/498 (0%)
 Frame = +3

Query: 267  MKEEYDALVKNGTWSLVPRASKSNVVDGKWVYRLKRDKHGAITRYKARFVAKGFRQQPGI 446
            M EEY AL++N TW LVP     N++D KWVY++KR   G I RYKAR VAKGF+Q+ GI
Sbjct: 1    MDEEYGALMRNNTWHLVPATQGRNLIDCKWVYKIKRKADGTIDRYKARLVAKGFKQRYGI 60

Query: 447  DFHETFSPVVKSTTIRVVLSLAVTNNWPLRQLDVQNAFLHGHLKEQVYMKQPPGFIDPQR 626
            D+ ETFSPVVK+ TIR++LSLAV+N W LRQLDVQNAFLHG L+E VYM+QPPG+ D  +
Sbjct: 61   DYEETFSPVVKAATIRLILSLAVSNGWSLRQLDVQNAFLHGVLEEDVYMRQPPGYEDKSK 120

Query: 627  PNHVCLLHKSLYGLKQAPRAWFERLSKALYDLGFKGSKTDPSLFIYSRGPKLLYILVYVD 806
             ++VC L K+LYGLKQAPRAWF RLS  L +LGF+ SK D SLF Y +G   +++L+YVD
Sbjct: 121  LDYVCKLDKALYGLKQAPRAWFSRLSMKLQNLGFQPSKADASLFFYKKGTISIFVLIYVD 180

Query: 807  DIIVTGNDKGTIDTIICQLGSAFALKDLGPLNYFLGIEIVPHVSGVLLSQKKYILELLQK 986
            DIIV  + +     ++  L   FALKDLG L+YFLGIE+     G++L+Q+KY  +LL++
Sbjct: 181  DIIVASSCEKATSALLQDLKEEFALKDLGALHYFLGIEVNKVHDGIILTQEKYATDLLKR 240

Query: 987  AGLSNCNXXXXXXXXXXXXXXXXXXAF--FNPVKYRQVVGALQYVTLSRPDIAFAVNKVC 1160
             G+  C                        +  +YR +VGALQY+TL+RPDIAF VNKVC
Sbjct: 241  VGMHGCKEINTPLSTTDKLLAKEGEPLGAEDSTRYRSIVGALQYLTLTRPDIAFPVNKVC 300

Query: 1161 QYMHAPTENHWSAVKRILRYLHGTVEYGMLIRRSSGSTLQAFTDVLWKGSPDTSLEAFSD 1340
            QY+HAPT  HW+AVKRILRYL G++  G+ I +S  + + A                FSD
Sbjct: 301  QYLHAPTSLHWTAVKRILRYLKGSLGLGLRICKSDSTLVSA----------------FSD 344

Query: 1341 ADWAGDSDDRRSTGGFAIYLGSNLISWTARKQRTVSRSSTEAEYKALADTVAELTWLQAL 1520
            ADWAG  DDR+STGGFA++LG+NLISW A KQ TVSRSSTEAEYKALA+  AE+  +Q L
Sbjct: 345  ADWAGCPDDRKSTGGFAVFLGANLISWNAWKQATVSRSSTEAEYKALANATAEIISVQTL 404

Query: 1521 LHELGIRSSSTPILWCDNLGATYLSANPIFHARTKHVEIDYHFVREKVAQGDLRVQHIST 1700
            L E GI       LWCDN+GAT LSANP+FHARTKH+E+DYHFVRE+V+QG L ++ + +
Sbjct: 405  LKERGIAQPRAACLWCDNIGATSLSANPVFHARTKHIEVDYHFVRERVSQGLLDIRFVPS 464

Query: 1701 HDQIADIFTKPLPTPRFL 1754
             DQ+AD FT   P  +++
Sbjct: 465  GDQVADGFTCNRPRRQYI 482


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
 gb|ABF94109.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1247

 Score =  565 bits (1456), Expect = 0.0
 Identities = 283/541 (52%), Positives = 369/541 (68%), Gaps = 4/541 (0%)
 Frame = +3

Query: 126  RPANLRQNP--KPRVPYNPSANHATVLPTTITEPTSFTVANNSPEWRQAMKEEYDALVKN 299
            RPA   Q+   K +V  + +  + T   T   EP +   A     W++AM  E+ AL  N
Sbjct: 706  RPATRLQSGIRKEKVYTDGTVKYRTTFLTVTGEPENLDDALKDNNWKKAMDAEFMALQNN 765

Query: 300  GTWSLVPRASKSNVVDGKWVYRLKRDKHGAITRYKARFVAKGFRQQPGIDFHETFSPVVK 479
             TW LVP     NV+D KWVY++KR + G++ RYKAR VAKGF+Q+ GID+ +TFSPVVK
Sbjct: 766  KTWHLVPPQKGRNVIDCKWVYKIKRKQDGSLDRYKARLVAKGFKQRYGIDYEDTFSPVVK 825

Query: 480  STTIRVVLSLAVTNNWPLRQLDVQNAFLHGHLKEQVYMKQPPGFIDPQRPNHVCLLHKSL 659
            + TIR++LS+AV+  W +RQLDVQNAFLHG L+E+VYMKQPPG+ D   P +VC L K+L
Sbjct: 826  AATIRIILSIAVSKGWCMRQLDVQNAFLHGVLEEEVYMKQPPGYEDSSLPGYVCKLDKAL 885

Query: 660  YGLKQAPRAWFERLSKALYDLGFKGSKTDPSLFIYSRGPKLLYILVYVDDIIVTGNDKGT 839
            YGLKQAPRAW+ RLSK LYD+GF+GSK D SLF Y++G  ++++L+YVDDIIVT + +  
Sbjct: 886  YGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGDLIIFVLIYVDDIIVTSSRQEA 945

Query: 840  IDTIICQLGSAFALKDLGPLNYFLGIEIVPHVSGVLLSQKKYILELLQKAGLSNCNXXXX 1019
            +  ++  L   FALKDLG L+YFLGIE+     G++L+Q KY+ +LL++  + +C     
Sbjct: 946  VPALLRDLQKEFALKDLGDLHYFLGIEVTKVSGGIVLTQDKYVNDLLRRVNMFDCKPVST 1005

Query: 1020 XXXXXXXXXXXXXXAF--FNPVKYRQVVGALQYVTLSRPDIAFAVNKVCQYMHAPTENHW 1193
                               +   YR VVGALQY+TL+RPDIAF VNKVCQ++HAPT +HW
Sbjct: 1006 PLSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTLTRPDIAFPVNKVCQFLHAPTTHHW 1065

Query: 1194 SAVKRILRYLHGTVEYGMLIRRSSGSTLQAFTDVLWKGSPDTSLEAFSDADWAGDSDDRR 1373
            +AVKRILRYL      G+ + +S                    + A+SDADWAG  DDRR
Sbjct: 1066 AAVKRILRYLKQCTRLGLKLSKSRSML----------------VSAYSDADWAGSLDDRR 1109

Query: 1374 STGGFAIYLGSNLISWTARKQRTVSRSSTEAEYKALADTVAELTWLQALLHELGIRSSST 1553
            STGGFA++LG NL+SW+ARKQ TVSRSSTE+EYKALA+  AE+ W+Q LL EL + S S 
Sbjct: 1110 STGGFAVFLGDNLVSWSARKQATVSRSSTESEYKALANATAEIMWVQTLLAELQVESPSM 1169

Query: 1554 PILWCDNLGATYLSANPIFHARTKHVEIDYHFVREKVAQGDLRVQHISTHDQIADIFTKP 1733
              LWCDNLGA YLSANP+FHARTKH+E+DYHFVRE+V++  L +  + T DQ+AD FTK 
Sbjct: 1170 AKLWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSRKLLEIDFVPTGDQVADGFTKA 1229

Query: 1734 L 1736
            L
Sbjct: 1230 L 1230


>gb|PNX98781.1| hypothetical protein L195_g022038 [Trifolium pratense]
          Length = 717

 Score =  548 bits (1412), Expect = 0.0
 Identities = 274/543 (50%), Positives = 368/543 (67%), Gaps = 1/543 (0%)
 Frame = +3

Query: 153  KPRVPYNPSANHATVLPTTITEPTSFTVANNSPEWRQAMKEEYDALVKNGTWSLVPRASK 332
            KP+  ++ S NH   LP  + EP++   A   P WR A+ EE++AL++NGTWSLVP    
Sbjct: 182  KPKRVFHAS-NHP--LPENL-EPSNVRQAMQHPHWRHAISEEFNALIRNGTWSLVPPPQD 237

Query: 333  SNVVDGKWVYRLKRDKHGAITRYKARFVAKGFRQQPGIDFHETFSPVVKSTTIRVVLSLA 512
             N+VD KW++R+KR+  G I RYKAR VAKGF Q PG+DF ETF+PVV+  TI+++LS+A
Sbjct: 238  KNIVDCKWLFRIKRNPDGTIARYKARLVAKGFTQCPGVDFKETFAPVVRPQTIKLILSIA 297

Query: 513  VTNNWPLRQLDVQNAFLHGHLKEQVYMKQPPGFIDPQRPNHVCLLHKSLYGLKQAPRAWF 692
            +   WP+ QLDV NAFL GHLKE VYM QPPG  D Q P +VC LHK++YGL+QAPRAW 
Sbjct: 298  LGKQWPMHQLDVNNAFLQGHLKEDVYMAQPPGLKDSQHPTYVCKLHKAIYGLRQAPRAWH 357

Query: 693  ERLSKALYDLGFKGSKTDPSLFIYSRGPKLLYILVYVDDIIVTGNDKGTIDTIICQLGSA 872
            + L + +   GF  SK+DPSLFIY+ G KL Y LVYVDD+++TGND   +   I  L + 
Sbjct: 358  DALKEFINLYGFVTSKSDPSLFIYTSGAKLAYFLVYVDDLLLTGNDSQMLHNFIETLSNK 417

Query: 873  FALKDLGPLNYFLGIEIVPHVSGVLLSQKKYILELLQKAGLSNCNXXXXXXXXXXXXXXX 1052
            F+LK++G  +YFLGIE++P  +G+ LSQ K+I E+L+K  +                   
Sbjct: 418  FSLKNMGSPHYFLGIELIPTPTGMFLSQHKFIREILEKFEMDGSKPAPTPLATTATLTLH 477

Query: 1053 XXXAFFNPVKYRQVVGALQYVTLSRPDIAFAVNKVCQYMHAPTENHWSAVKRILRYLHGT 1232
               A  +   YR+++GALQY+ L+RPD++FA+NK+ Q+MH PT  H   +KR+LRYL  T
Sbjct: 478  DGTAATDSTYYRKIIGALQYLNLTRPDLSFAINKLSQFMHKPTTLHLQHLKRLLRYLKST 537

Query: 1233 VEYGMLIRRSSGSTLQAFTDVLWKGSPDT-SLEAFSDADWAGDSDDRRSTGGFAIYLGSN 1409
            +  G+ +++                 P T SL AFSDADW G++DDR ST  + I+ G N
Sbjct: 538  INLGIFLKK-----------------PHTFSLCAFSDADWGGNTDDRTSTSAYIIFFGGN 580

Query: 1410 LISWTARKQRTVSRSSTEAEYKALADTVAELTWLQALLHELGIRSSSTPILWCDNLGATY 1589
             ISW +RKQRTV+RSSTEAEY+A+A T AEL WLQ LL EL +  +  P L CDN+GATY
Sbjct: 581  PISWLSRKQRTVARSSTEAEYRAVATTTAELMWLQNLLLELHMCVNQPPKLLCDNVGATY 640

Query: 1590 LSANPIFHARTKHVEIDYHFVREKVAQGDLRVQHISTHDQIADIFTKPLPTPRFLFLRSK 1769
            L +NP++H++ KH+ +DYHFVRE+V  G L+V H+ST DQ+AD+ TKPL T RF  LR+K
Sbjct: 641  LCSNPVYHSKMKHISMDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLATSRFADLRTK 700

Query: 1770 LQV 1778
            +QV
Sbjct: 701  MQV 703


>emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]
          Length = 1172

 Score =  562 bits (1448), Expect = 0.0
 Identities = 273/524 (52%), Positives = 366/524 (69%)
 Frame = +3

Query: 216  EPTSFTVANNSPEWRQAMKEEYDALVKNGTWSLVPRASKSNVVDGKWVYRLKRDKHGAIT 395
            EPT+ T A   P+WR+AM EEYDALV+NGTW LVP     NVV  KW++R KR+  G+I 
Sbjct: 655  EPTTPTQALKDPKWRKAMSEEYDALVRNGTWELVPSNPSQNVVGCKWIFRTKRNSDGSID 714

Query: 396  RYKARFVAKGFRQQPGIDFHETFSPVVKSTTIRVVLSLAVTNNWPLRQLDVQNAFLHGHL 575
            R+KAR VAKGF Q+P ID+++TFSPVVK TTI +VLS+AV+N W LRQLDV N FL G L
Sbjct: 715  RFKARLVAKGFHQRPDIDYYDTFSPVVKPTTIMLVLSVAVSNGWILRQLDVNNVFLQGTL 774

Query: 576  KEQVYMKQPPGFIDPQRPNHVCLLHKSLYGLKQAPRAWFERLSKALYDLGFKGSKTDPSL 755
             E VYM QPPGFID   P+HVC L K++YGLKQAPRAW++ L   L   GF  S  D SL
Sbjct: 775  TEHVYMTQPPGFIDQDSPSHVCKLKKAIYGLKQAPRAWYQELRSFLLQFGFTNSHADTSL 834

Query: 756  FIYSRGPKLLYILVYVDDIIVTGNDKGTIDTIICQLGSAFALKDLGPLNYFLGIEIVPHV 935
            F+      L+Y LVYVDD+I+TG+D+  ++  I  L + F+LKDLG L+YFLG+EIVP+ 
Sbjct: 835  FVLKFRGHLVYFLVYVDDLIITGDDEHLVNRYIHLLANRFSLKDLGKLSYFLGVEIVPNS 894

Query: 936  SGVLLSQKKYILELLQKAGLSNCNXXXXXXXXXXXXXXXXXXAFFNPVKYRQVVGALQYV 1115
             G LLSQ++Y+L+LL +  +S                        +P ++R VVG+LQY+
Sbjct: 895  QGFLLSQRRYLLDLLARTHMSEAKPVQTPLPSGTKISLHSGDKLSDPTEFRAVVGSLQYL 954

Query: 1116 TLSRPDIAFAVNKVCQYMHAPTENHWSAVKRILRYLHGTVEYGMLIRRSSGSTLQAFTDV 1295
             L+R DIAFA NK+ Q+MH PT  HW+ VKR+LRYL GT ++ + +   S  +L AF+D 
Sbjct: 955  LLTRLDIAFAANKLSQFMHTPTTEHWTLVKRLLRYLCGTPDHSLQLYCDSPLSLHAFSD- 1013

Query: 1296 LWKGSPDTSLEAFSDADWAGDSDDRRSTGGFAIYLGSNLISWTARKQRTVSRSSTEAEYK 1475
                    +L A+SDADWAGD DD  STG + +YLG N ISW+++KQ+ ++RSSTEAEY+
Sbjct: 1014 --------ALHAYSDADWAGDPDDFSSTGAYIVYLGRNPISWSSKKQKNIARSSTEAEYR 1065

Query: 1476 ALADTVAELTWLQALLHELGIRSSSTPILWCDNLGATYLSANPIFHARTKHVEIDYHFVR 1655
             +A+T AEL W+ +LL +LGI+  + P+++CDN+GAT + +NP+FH+R KHV  D+HF+R
Sbjct: 1066 FVANTAAELNWVSSLLCDLGIQLPTCPVIYCDNVGATQVCSNPVFHSRMKHVAFDFHFIR 1125

Query: 1656 EKVAQGDLRVQHISTHDQIADIFTKPLPTPRFLFLRSKLQVVAR 1787
            ++V +G LRV H+S+ DQ+AD+ TK LP  RFLFLR K+ +  R
Sbjct: 1126 DQVQKGILRVAHVSSTDQLADLLTKSLPRARFLFLRDKIGLSCR 1169


>gb|PNX97009.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 716

 Score =  547 bits (1410), Expect = 0.0
 Identities = 268/542 (49%), Positives = 363/542 (66%)
 Frame = +3

Query: 153  KPRVPYNPSANHATVLPTTITEPTSFTVANNSPEWRQAMKEEYDALVKNGTWSLVPRASK 332
            KP   Y  ++ H   LP  + EP++   A     WRQA+ EE++AL++NGTWSLVP+   
Sbjct: 182  KPNKKYFQASLHP--LPENL-EPSNIRQAMQHTHWRQAISEEFNALIRNGTWSLVPQPPN 238

Query: 333  SNVVDGKWVYRLKRDKHGAITRYKARFVAKGFRQQPGIDFHETFSPVVKSTTIRVVLSLA 512
             N+VD KW++R+KR+  G I RYKAR VAKGF Q PG+DF ETF+PVV+  TI+++L++A
Sbjct: 239  LNIVDCKWLFRIKRNPDGTIARYKARLVAKGFTQSPGVDFKETFAPVVRPQTIKLILTIA 298

Query: 513  VTNNWPLRQLDVQNAFLHGHLKEQVYMKQPPGFIDPQRPNHVCLLHKSLYGLKQAPRAWF 692
            +   W + QLDV NAFL G LKE VYM QPPG  D Q PNHVC LHK++YGL+QAPRAW 
Sbjct: 299  LGKGWLMHQLDVNNAFLQGSLKEDVYMAQPPGLKDKQYPNHVCKLHKAIYGLRQAPRAWH 358

Query: 693  ERLSKALYDLGFKGSKTDPSLFIYSRGPKLLYILVYVDDIIVTGNDKGTIDTIICQLGSA 872
            + L   +   GF  SK+DPSLFIY+ G  L Y LVYVDD+++TGN+   +   I  + + 
Sbjct: 359  DSLKAFITSHGFTTSKSDPSLFIYNSGSTLAYFLVYVDDLLLTGNNAQFLQDFIQSISNR 418

Query: 873  FALKDLGPLNYFLGIEIVPHVSGVLLSQKKYILELLQKAGLSNCNXXXXXXXXXXXXXXX 1052
            F+LK++G  +YFLGIE++P   G+ LSQ K+I ++L++  ++                  
Sbjct: 419  FSLKNMGTPHYFLGIELIPTNKGLFLSQHKFIRDILERFDMAGAKPAPTPLSTTATLTLN 478

Query: 1053 XXXAFFNPVKYRQVVGALQYVTLSRPDIAFAVNKVCQYMHAPTENHWSAVKRILRYLHGT 1232
                  +   YR+++GALQY+ L+RPD++FA+NK+ Q+MH PT  H   +KR+LRYL GT
Sbjct: 479  DGTPATDSTHYRKIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHLQHLKRLLRYLKGT 538

Query: 1233 VEYGMLIRRSSGSTLQAFTDVLWKGSPDTSLEAFSDADWAGDSDDRRSTGGFAIYLGSNL 1412
            + +G+ +R+SS   L AFT                DADW G+ DDR ST  + I+ G N 
Sbjct: 539  INFGIFLRQSSSLQLYAFT----------------DADWGGNVDDRTSTSAYLIFFGGNP 582

Query: 1413 ISWTARKQRTVSRSSTEAEYKALADTVAELTWLQALLHELGIRSSSTPILWCDNLGATYL 1592
            ISW +RKQRTV+RSSTEAEY+A+A T AE+ WL  LLHEL I  S  P+L CDN+GATYL
Sbjct: 583  ISWLSRKQRTVARSSTEAEYRAVATTTAEIMWLTNLLHELHILVSKPPLLLCDNVGATYL 642

Query: 1593 SANPIFHARTKHVEIDYHFVREKVAQGDLRVQHISTHDQIADIFTKPLPTPRFLFLRSKL 1772
             +NP+ H++ KH+ +DYHFVRE+V  G L+V H+ST DQ+AD+ TKPL   RF+ LRSK+
Sbjct: 643  CSNPVLHSKMKHISMDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLAHTRFIDLRSKM 702

Query: 1773 QV 1778
            QV
Sbjct: 703  QV 704


>ref|YP_002000554.1| orf490 (mitochondrion) [Oryza sativa Japonica Group]
 dbj|BAC19858.1| orf490 (mitochondrion) [Oryza sativa Japonica Group]
          Length = 490

 Score =  538 bits (1385), Expect = 0.0
 Identities = 270/498 (54%), Positives = 346/498 (69%), Gaps = 2/498 (0%)
 Frame = +3

Query: 267  MKEEYDALVKNGTWSLVPRASKSNVVDGKWVYRLKRDKHGAITRYKARFVAKGFRQQPGI 446
            M EEY AL++N TW LVP     N++D KWVY++KR   G I RYKAR VAKGF+Q+ GI
Sbjct: 1    MDEEYGALMRNNTWHLVPATQGRNLIDCKWVYKIKRKADGTIDRYKARLVAKGFKQRYGI 60

Query: 447  DFHETFSPVVKSTTIRVVLSLAVTNNWPLRQLDVQNAFLHGHLKEQVYMKQPPGFIDPQR 626
            D+ ETFSPVVK+ TIR++LSLAV+N W LRQLDVQNAFLHG L+E VYM+QPPG+ D  +
Sbjct: 61   DYEETFSPVVKAATIRLILSLAVSNGWSLRQLDVQNAFLHGVLEEDVYMRQPPGYEDKSK 120

Query: 627  PNHVCLLHKSLYGLKQAPRAWFERLSKALYDLGFKGSKTDPSLFIYSRGPKLLYILVYVD 806
             ++VC L K+LYGL+ APRAWF RLS  L +LGF+ SK D SLF Y +G   +++L+YVD
Sbjct: 121  LDYVCKLDKALYGLRHAPRAWFSRLSMKLQNLGFQPSKADASLFFYKKGTISIFVLIYVD 180

Query: 807  DIIVTGNDKGTIDTIICQLGSAFALKDLGPLNYFLGIEIVPHVSGVLLSQKKYILELLQK 986
            DIIV  + +     ++  L   FALKDLG L+YFLGIE+     G++L+Q+KY  +LL++
Sbjct: 181  DIIVASSCEKATSALLQDLKEEFALKDLGALHYFLGIEVNKVHDGIILTQEKYATDLLKR 240

Query: 987  AGLSNCNXXXXXXXXXXXXXXXXXXAF--FNPVKYRQVVGALQYVTLSRPDIAFAVNKVC 1160
             G+  C                        +  +YR +VGALQY+TL+RPDIAF VNKVC
Sbjct: 241  VGMHGCKEINTPLSTTDKLLAKEGEPLGAEDSTRYRSIVGALQYLTLTRPDIAFPVNKVC 300

Query: 1161 QYMHAPTENHWSAVKRILRYLHGTVEYGMLIRRSSGSTLQAFTDVLWKGSPDTSLEAFSD 1340
            QY+HAPT  HW+AVKRILRYL G++  G+ I +S  + + A                FSD
Sbjct: 301  QYLHAPTSLHWTAVKRILRYLKGSLGLGLRICKSDSTLVSA----------------FSD 344

Query: 1341 ADWAGDSDDRRSTGGFAIYLGSNLISWTARKQRTVSRSSTEAEYKALADTVAELTWLQAL 1520
            ADWAG  DDR+STGGFA++LG+NLISW A KQ TVSRSSTEAEYKALA+  AE+  +Q L
Sbjct: 345  ADWAGCPDDRKSTGGFAVFLGANLISWNAWKQATVSRSSTEAEYKALANATAEIISVQTL 404

Query: 1521 LHELGIRSSSTPILWCDNLGATYLSANPIFHARTKHVEIDYHFVREKVAQGDLRVQHIST 1700
            L E GI       LWCDN+GAT LSANP+FHARTKH+E+DYHFVRE+V+QG L ++ + +
Sbjct: 405  LKERGIAQPRAACLWCDNIGATSLSANPVFHARTKHIEVDYHFVRERVSQGLLDIRFVPS 464

Query: 1701 HDQIADIFTKPLPTPRFL 1754
             DQ+AD FT   P  +++
Sbjct: 465  GDQVADGFTCNRPRRQYI 482


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  567 bits (1462), Expect = 0.0
 Identities = 278/513 (54%), Positives = 362/513 (70%), Gaps = 2/513 (0%)
 Frame = +3

Query: 204  TTITEPTSFTVANNSPEWRQAMKEEYDALVKNGTWSLVPRASKSNVVDGKWVYRLKRDKH 383
            T+  EP +   A     W+ AM+ EYDAL+KN TW LVP     NV+  KWVY++KR   
Sbjct: 923  TSTGEPQNDKEALGDKNWKAAMEAEYDALIKNDTWHLVPYEKGQNVIGCKWVYKIKRKAD 982

Query: 384  GAITRYKARFVAKGFRQQPGIDFHETFSPVVKSTTIRVVLSLAVTNNWPLRQLDVQNAFL 563
            G + RYKAR VAKGF+Q+ GID+ +TFSPVVK+ TIR++LS+AV+  W LRQLDVQNAFL
Sbjct: 983  GTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFL 1042

Query: 564  HGHLKEQVYMKQPPGFIDPQRPNHVCLLHKSLYGLKQAPRAWFERLSKALYDLGFKGSKT 743
            HG L+E+VYM+QPPGF    +PN+VC L K+LYGLKQAPRAW+ RLSK L +LGF+ SK 
Sbjct: 1043 HGFLEEEVYMQQPPGFESFSKPNYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKA 1102

Query: 744  DPSLFIYSRGPKLLYILVYVDDIIVTGNDKGTIDTIICQLGSAFALKDLGPLNYFLGIEI 923
            D SLF  ++G  ++++LVYVDDII+  + +     ++  L   FALKDLG L+YFLGIE+
Sbjct: 1103 DTSLFFLNKGGIIMFVLVYVDDIIIASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEV 1162

Query: 924  VPHVSGVLLSQKKYILELLQKAGLSNCNXXXXXXXXXXXXXXXXXXAF--FNPVKYRQVV 1097
                +G++L+Q+KY  +LL++  +SNC                        +  +YR +V
Sbjct: 1163 TKVPNGIVLTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIV 1222

Query: 1098 GALQYVTLSRPDIAFAVNKVCQYMHAPTENHWSAVKRILRYLHGTVEYGMLIRRSSGSTL 1277
            GALQY+TL+RPDIA++VNKVCQ++HAPT +HW+AVKRILRYL+     G+ I +S+    
Sbjct: 1223 GALQYLTLTRPDIAYSVNKVCQFLHAPTTDHWTAVKRILRYLNQCTSLGLNIHKSA---- 1278

Query: 1278 QAFTDVLWKGSPDTSLEAFSDADWAGDSDDRRSTGGFAIYLGSNLISWTARKQRTVSRSS 1457
                         T +  +SDADWAG  DDR+STGGFA++LGSNL+SW+ARKQ TVSRSS
Sbjct: 1279 ------------STLVHGYSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSS 1326

Query: 1458 TEAEYKALADTVAELTWLQALLHELGIRSSSTPILWCDNLGATYLSANPIFHARTKHVEI 1637
            TEAEYKA+A+T AEL W+Q LL ELGI S     +WCDNLGA YLSANP+FHARTKH+E+
Sbjct: 1327 TEAEYKAVANTTAELIWVQTLLRELGIDSPKAAKIWCDNLGAKYLSANPVFHARTKHIEV 1386

Query: 1638 DYHFVREKVAQGDLRVQHISTHDQIADIFTKPL 1736
            DYHFVRE+V+Q  L +  + + DQ+AD FTK L
Sbjct: 1387 DYHFVRERVSQKLLEIDFVPSGDQVADGFTKAL 1419


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|ABF96679.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1437

 Score =  567 bits (1462), Expect = 0.0
 Identities = 281/514 (54%), Positives = 362/514 (70%), Gaps = 2/514 (0%)
 Frame = +3

Query: 204  TTITEPTSFTVANNSPEWRQAMKEEYDALVKNGTWSLVPRASKSNVVDGKWVYRLKRDKH 383
            T+  EP +   A  +  W+ AM  EY AL+KN TW LVP     NV+D KWVY++KR + 
Sbjct: 918  TSTGEPENLQDALQNNNWKCAMDAEYMALIKNNTWHLVPPQQGRNVIDCKWVYKIKRKQD 977

Query: 384  GAITRYKARFVAKGFRQQPGIDFHETFSPVVKSTTIRVVLSLAVTNNWPLRQLDVQNAFL 563
            G++ RYKAR VAKGF+Q+ GID+ +TFSPVVK+ TIR++LS+AV+  W LRQLDVQNAFL
Sbjct: 978  GSLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWCLRQLDVQNAFL 1037

Query: 564  HGHLKEQVYMKQPPGFIDPQRPNHVCLLHKSLYGLKQAPRAWFERLSKALYDLGFKGSKT 743
            HG L+E+VYMKQPPG+ +P  P++VC L K+LYGLKQAPRAW+ RLS  L+DLGFKGSK 
Sbjct: 1038 HGVLEEEVYMKQPPGYENPSTPDYVCKLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKA 1097

Query: 744  DPSLFIYSRGPKLLYILVYVDDIIVTGNDKGTIDTIICQLGSAFALKDLGPLNYFLGIEI 923
            D SLF Y++G   +++L+YVDDIIV  + K  +  ++  L   FALKDLG L+YFLGIE+
Sbjct: 1098 DTSLFFYNKGSLTIFLLIYVDDIIVVSSRKEAVSALLQDLQKEFALKDLGDLHYFLGIEV 1157

Query: 924  VPHVSGVLLSQKKYILELLQKAGLSNCNXXXXXXXXXXXXXXXXXXAF--FNPVKYRQVV 1097
                 G+L+SQ+KY  +LL++  +S+C                        +  +YR +V
Sbjct: 1158 TKIPGGILMSQEKYASDLLKRVNMSDCKSVATPLSASEKLIAGKGTILGPNDATQYRSIV 1217

Query: 1098 GALQYVTLSRPDIAFAVNKVCQYMHAPTENHWSAVKRILRYLHGTVEYGMLIRRSSGSTL 1277
            GALQY+TL+R DIAF+VNKVCQ++H PT  HW+AVKRILRY+      G+ I +SS    
Sbjct: 1218 GALQYLTLTRLDIAFSVNKVCQFLHNPTTEHWAAVKRILRYIKQCTGLGLRICKSSSMI- 1276

Query: 1278 QAFTDVLWKGSPDTSLEAFSDADWAGDSDDRRSTGGFAIYLGSNLISWTARKQRTVSRSS 1457
                           +  +SDADWAG  DDRRSTGGFA+YLG NL+SW A+KQ TVSRSS
Sbjct: 1277 ---------------VSGYSDADWAGCLDDRRSTGGFAVYLGDNLVSWNAKKQATVSRSS 1321

Query: 1458 TEAEYKALADTVAELTWLQALLHELGIRSSSTPILWCDNLGATYLSANPIFHARTKHVEI 1637
            TEAEYKALA+  AE+ W+Q LL EL I S +   LWCDN+GA YLS NP+FHARTKH+E+
Sbjct: 1322 TEAEYKALANATAEIMWVQTLLQELNIVSPAMAQLWCDNMGAKYLSFNPVFHARTKHIEV 1381

Query: 1638 DYHFVREKVAQGDLRVQHISTHDQIADIFTKPLP 1739
            DYHFVRE+VA+  L+V ++ST+DQ+AD FTK LP
Sbjct: 1382 DYHFVRERVARKLLQVDYVSTNDQVADGFTKALP 1415


>gb|PNY03462.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
            [Trifolium pratense]
          Length = 716

 Score =  546 bits (1406), Expect = 0.0
 Identities = 267/542 (49%), Positives = 362/542 (66%)
 Frame = +3

Query: 153  KPRVPYNPSANHATVLPTTITEPTSFTVANNSPEWRQAMKEEYDALVKNGTWSLVPRASK 332
            KP   Y  ++ H   LP  + EP++   A     WRQA+ EE++AL++NGTWSLVP+   
Sbjct: 182  KPNKKYFQASLHP--LPENL-EPSNIRQAMQHTHWRQAISEEFNALIRNGTWSLVPQPPN 238

Query: 333  SNVVDGKWVYRLKRDKHGAITRYKARFVAKGFRQQPGIDFHETFSPVVKSTTIRVVLSLA 512
             N+VD KW++R+KR+  G I RYKAR VAKGF Q PG+DF ETF+PVV+  TI+++L++A
Sbjct: 239  LNIVDCKWLFRIKRNPDGTIARYKARLVAKGFTQSPGVDFKETFAPVVRPQTIKLILTIA 298

Query: 513  VTNNWPLRQLDVQNAFLHGHLKEQVYMKQPPGFIDPQRPNHVCLLHKSLYGLKQAPRAWF 692
            +   W + QLDV NAFL G LKE VYM QPPG  D Q PNHVC LHK++YGL+QAPRAW 
Sbjct: 299  LGKGWLMHQLDVNNAFLQGSLKEDVYMAQPPGLKDKQYPNHVCKLHKAIYGLRQAPRAWH 358

Query: 693  ERLSKALYDLGFKGSKTDPSLFIYSRGPKLLYILVYVDDIIVTGNDKGTIDTIICQLGSA 872
            + L   +   GF  SK+DPSLFIY+ G  L Y LVYVDD+++TGN+   +   I  + + 
Sbjct: 359  DSLKAFITSHGFTTSKSDPSLFIYNSGSTLAYFLVYVDDLLLTGNNAQFLQDFIQSISNR 418

Query: 873  FALKDLGPLNYFLGIEIVPHVSGVLLSQKKYILELLQKAGLSNCNXXXXXXXXXXXXXXX 1052
            F+LK++G  +YFLGIE++P   G+ LSQ K+I ++L++  ++                  
Sbjct: 419  FSLKNMGTPHYFLGIELIPTNKGLFLSQHKFIRDILERFDMAGAKPAPTPLSTTATLTLN 478

Query: 1053 XXXAFFNPVKYRQVVGALQYVTLSRPDIAFAVNKVCQYMHAPTENHWSAVKRILRYLHGT 1232
                  +   YR+++GALQY+ L+RPD++FA+NK+ Q+MH PT  H   +KR+LRYL GT
Sbjct: 479  DGTPATDSTHYRKIIGALQYLNLTRPDLSFAINKLSQFMHKPTSLHLQHLKRLLRYLKGT 538

Query: 1233 VEYGMLIRRSSGSTLQAFTDVLWKGSPDTSLEAFSDADWAGDSDDRRSTGGFAIYLGSNL 1412
            + +G+ +R+SS   L AFT                DADW G+ DDR ST  + I+ G N 
Sbjct: 539  INFGIFLRQSSSLQLYAFT----------------DADWGGNVDDRTSTSAYLIFFGGNP 582

Query: 1413 ISWTARKQRTVSRSSTEAEYKALADTVAELTWLQALLHELGIRSSSTPILWCDNLGATYL 1592
            ISW +RKQRTV+RSSTEAEY+ +A T AE+ WL  LLHEL I  S  P+L CDN+GATYL
Sbjct: 583  ISWLSRKQRTVARSSTEAEYRVVATTTAEIMWLTNLLHELHILVSKPPLLLCDNVGATYL 642

Query: 1593 SANPIFHARTKHVEIDYHFVREKVAQGDLRVQHISTHDQIADIFTKPLPTPRFLFLRSKL 1772
             +NP+ H++ KH+ +DYHFVRE+V  G L+V H+ST DQ+AD+ TKPL   RF+ LRSK+
Sbjct: 643  CSNPVLHSKMKHISMDYHFVREQVRDGKLQVSHVSTKDQLADLLTKPLAHTRFIDLRSKM 702

Query: 1773 QV 1778
            QV
Sbjct: 703  QV 704