BLASTX nr result

ID: Chrysanthemum21_contig00024379 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00024379
         (372 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_021975304.1| putative pentatricopeptide repeat-containing...    74   8e-13
gb|OTG36982.1| putative ribosomal protein L18/L5 [Helianthus ann...    74   8e-13
gb|OTG36996.1| putative pentatricopeptide repeat protein [Helian...    69   4e-11
ref|XP_023750846.1| pentatricopeptide repeat-containing protein ...    59   2e-07

>ref|XP_021975304.1| putative pentatricopeptide repeat-containing protein At1g12700,
           mitochondrial [Helianthus annuus]
          Length = 539

 Score = 73.9 bits (180), Expect = 8e-13
 Identities = 34/58 (58%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
 Frame = -3

Query: 172 KVNYGKTNVMTYAIMLNGYCNYKDVSKALAVFEEMLRRKL-ANGGVCKRTIRILCDCG 2
           +V YGK +V +Y IM NGYC+  DV KA+ VFEEML+RK+  NG + +R IR+LCDCG
Sbjct: 439 EVRYGKLDVTSYTIMCNGYCSGNDVQKAVMVFEEMLKRKMTVNGALYERVIRLLCDCG 496


>gb|OTG36982.1| putative ribosomal protein L18/L5 [Helianthus annuus]
          Length = 861

 Score = 73.9 bits (180), Expect = 8e-13
 Identities = 34/58 (58%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
 Frame = -3

Query: 172 KVNYGKTNVMTYAIMLNGYCNYKDVSKALAVFEEMLRRKL-ANGGVCKRTIRILCDCG 2
           +V YGK +V +Y IM NGYC+  DV KA+ VFEEML+RK+  NG + +R IR+LCDCG
Sbjct: 439 EVRYGKLDVTSYTIMCNGYCSGNDVQKAVMVFEEMLKRKMTVNGALYERVIRLLCDCG 496


>gb|OTG36996.1| putative pentatricopeptide repeat protein [Helianthus annuus]
          Length = 518

 Score = 68.9 bits (167), Expect = 4e-11
 Identities = 33/55 (60%), Positives = 42/55 (76%), Gaps = 1/55 (1%)
 Frame = -3

Query: 163 YGKTNVMTYAIMLNGYCNYKDVSKALAVFEEMLRRKLA-NGGVCKRTIRILCDCG 2
           YGK +V +Y IM NGYC+  DV KA+ VFEEML+RK+A NG + +R IR+LCD G
Sbjct: 421 YGKLDVTSYTIMFNGYCSGNDVRKAVMVFEEMLKRKMAVNGALYERVIRLLCDRG 475


>ref|XP_023750846.1| pentatricopeptide repeat-containing protein At2g17140-like [Lactuca
           sativa]
          Length = 540

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 31/54 (57%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
 Frame = -3

Query: 160 GKTNVMTYAIMLNGYCNYKDVSKALAVFEEMLRRKL-ANGGVCKRTIRILCDCG 2
           GK NV T  IMLNGYC++ DVSKA+ VFEEML+ K+  +G   +R I  LCD G
Sbjct: 446 GKHNVETCRIMLNGYCSHNDVSKAIVVFEEMLKSKMVVDGASYERLICGLCDHG 499


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