BLASTX nr result

ID: Chrysanthemum21_contig00024237 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00024237
         (372 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_023752067.1| DEAD-box ATP-dependent RNA helicase 47A [Lac...    61   3e-08
ref|XP_022029862.1| DEAD-box ATP-dependent RNA helicase 47, mito...    59   2e-07
gb|KVH90084.1| DNA/RNA helicase, DEAD/DEAH box type, N-terminal,...    59   2e-07

>ref|XP_023752067.1| DEAD-box ATP-dependent RNA helicase 47A [Lactuca sativa]
 gb|PLY94447.1| hypothetical protein LSAT_6X7001 [Lactuca sativa]
          Length = 561

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 41/113 (36%), Positives = 52/113 (46%), Gaps = 23/113 (20%)
 Frame = +3

Query: 102 MAALVATRVRFLVGDTLSIKKLPKITRAVS-----------------------XXXXVSD 212
           MAA+VATR  FLVGDTL++KKLPK +R  S                            + 
Sbjct: 1   MAAIVATRFLFLVGDTLTLKKLPKFSRPASFHKSAYILSPANAPLTLKSLGFKNDTETTT 60

Query: 213 TITKFEKSNGRQVVSTLQVIQDQXXXXXXXXXXXXXXXXXXXNPIDVDLAPFS 371
           T TKF+K N RQ VST ++IQ Q                   NP+ ++ APFS
Sbjct: 61  TATKFKKDNIRQTVSTPELIQGQLKEVKTNRVKVKPKAVATENPLVIESAPFS 113


>ref|XP_022029862.1| DEAD-box ATP-dependent RNA helicase 47, mitochondrial-like
           [Helianthus annuus]
 ref|XP_022029863.1| DEAD-box ATP-dependent RNA helicase 47, mitochondrial-like
           [Helianthus annuus]
 gb|OTG32764.1| putative P-loop containing nucleoside triphosphate hydrolases
           superfamily protein [Helianthus annuus]
          Length = 559

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 44/114 (38%), Positives = 51/114 (44%), Gaps = 24/114 (21%)
 Frame = +3

Query: 102 MAALVATRVRFLVGDTLSIKKLPKITRAVSXXXXV-----------------------SD 212
           MAALVATR  FLVGDTLSIKKLPKI++A S                             +
Sbjct: 1   MAALVATRFLFLVGDTLSIKKLPKISKAASFHKSAYILNRFGTTHGPLTLESLGFKNRDE 60

Query: 213 TITKFEKSNGRQVVSTLQVIQDQ-XXXXXXXXXXXXXXXXXXXNPIDVDLAPFS 371
              K E +  R  VSTLQVIQ Q                    NPI+++ APFS
Sbjct: 61  PTAKLETNKVRPTVSTLQVIQGQVEEEVKIKRVKVKPKAVAVENPIEIESAPFS 114


>gb|KVH90084.1| DNA/RNA helicase, DEAD/DEAH box type, N-terminal, partial [Cynara
           cardunculus var. scolymus]
          Length = 599

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 44/123 (35%), Positives = 55/123 (44%), Gaps = 23/123 (18%)
 Frame = +3

Query: 72  NQ*FKEHLGKMAALVATRVRFLVGDTLSIKKLPKITRAVSXXXXVS-------------- 209
           +Q  +E LG MA LVATR  FLVGD LS+KKLPKI++A S                    
Sbjct: 40  SQDLEEPLGNMAGLVATRFLFLVGDALSVKKLPKISKAASFHKSACILSQFGSSNGPLTL 99

Query: 210 ---------DTITKFEKSNGRQVVSTLQVIQDQXXXXXXXXXXXXXXXXXXXNPIDVDLA 362
                    +T+ KFEK   R  VSTLQ   +Q                   NP+ ++ A
Sbjct: 100 KSLGFKNGIETVPKFEKDKVRNKVSTLQGEVEQ---VKSKRVIVKVKAVAMGNPLVIESA 156

Query: 363 PFS 371
           PFS
Sbjct: 157 PFS 159


Top