BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00023281
         (355 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KVH87043.1| RNA-processing protein, HAT helix [Cynara cardunc...    76   1e-13
ref|XP_022035507.1| pre-mRNA-processing factor 39 isoform X4 [He...    59   1e-07
ref|XP_022035506.1| pre-mRNA-processing factor 39 isoform X3 [He...    59   1e-07
ref|XP_022035505.1| pre-mRNA-processing factor 39 isoform X2 [He...    59   1e-07
ref|XP_022035504.1| pre-mRNA-processing factor 39 isoform X1 [He...    59   1e-07

>gb|KVH87043.1| RNA-processing protein, HAT helix [Cynara cardunculus var. scolymus]
          Length = 897

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 49/126 (38%), Positives = 65/126 (51%), Gaps = 15/126 (11%)
 Frame = -3

Query: 347  PVSLECLSLCTQEEEPNDLTHKSSTALEDTMNRSTANKNSTTDSPKRPDVTDEHGSE--- 177
            PVSLE LSL T+E+ PN L     +   +  + ST N  S T+S K+ + T+EHGSE   
Sbjct: 654  PVSLESLSLLTREKGPNVLEDTVPSVNNENPSTSTRNPFSATESAKKQNGTEEHGSESLS 713

Query: 176  -----------TDPPQIPSQNVET-CKTSHMLTASEHVDPEPTAHIVTIAQLPNKDYPTV 33
                       TDP Q  SQN ET CKT+HMLTASE    E         + P++ +P +
Sbjct: 714  FSPGHRNLREQTDPQQYSSQNPETCCKTNHMLTASEDASAESDGQPRQHHRQPHQGFPLI 773

Query: 32   PNAPQN 15
              +  N
Sbjct: 774  HESTAN 779


>ref|XP_022035507.1| pre-mRNA-processing factor 39 isoform X4 [Helianthus annuus]
 ref|XP_022035508.1| pre-mRNA-processing factor 39 isoform X4 [Helianthus annuus]
          Length = 903

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 15/106 (14%)
 Frame = -3

Query: 299 NDLTHKSSTALEDTMNRSTANKN------STTDSPKRPDVTDEHGSETDPPQIPSQNVET 138
           ND  H S    + T N S +++N      S T   K  ++  E   ETDP QIPS+N ET
Sbjct: 625 NDDLHVSQKDDQITTNPSVSDQNTVPVTESATKQHKADELEPEPEPETDPHQIPSRNTET 684

Query: 137 CKTSHMLTASEHV----DPEPTA-----HIVTIAQLPNKDYPTVPN 27
           C+T++MLTASEHV     P+  A     H+ T    P   YP   N
Sbjct: 685 CETNNMLTASEHVPNVQQPQNPATAAQSHVFTHNGQPVVQYPVQSN 730


>ref|XP_022035506.1| pre-mRNA-processing factor 39 isoform X3 [Helianthus annuus]
          Length = 920

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 15/106 (14%)
 Frame = -3

Query: 299 NDLTHKSSTALEDTMNRSTANKN------STTDSPKRPDVTDEHGSETDPPQIPSQNVET 138
           ND  H S    + T N S +++N      S T   K  ++  E   ETDP QIPS+N ET
Sbjct: 642 NDDLHVSQKDDQITTNPSVSDQNTVPVTESATKQHKADELEPEPEPETDPHQIPSRNTET 701

Query: 137 CKTSHMLTASEHV----DPEPTA-----HIVTIAQLPNKDYPTVPN 27
           C+T++MLTASEHV     P+  A     H+ T    P   YP   N
Sbjct: 702 CETNNMLTASEHVPNVQQPQNPATAAQSHVFTHNGQPVVQYPVQSN 747


>ref|XP_022035505.1| pre-mRNA-processing factor 39 isoform X2 [Helianthus annuus]
 gb|OTG29091.1| putative tetratricopeptide-like helical domain-containing protein
           [Helianthus annuus]
          Length = 925

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 15/106 (14%)
 Frame = -3

Query: 299 NDLTHKSSTALEDTMNRSTANKN------STTDSPKRPDVTDEHGSETDPPQIPSQNVET 138
           ND  H S    + T N S +++N      S T   K  ++  E   ETDP QIPS+N ET
Sbjct: 647 NDDLHVSQKDDQITTNPSVSDQNTVPVTESATKQHKADELEPEPEPETDPHQIPSRNTET 706

Query: 137 CKTSHMLTASEHV----DPEPTA-----HIVTIAQLPNKDYPTVPN 27
           C+T++MLTASEHV     P+  A     H+ T    P   YP   N
Sbjct: 707 CETNNMLTASEHVPNVQQPQNPATAAQSHVFTHNGQPVVQYPVQSN 752


>ref|XP_022035504.1| pre-mRNA-processing factor 39 isoform X1 [Helianthus annuus]
          Length = 926

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 41/106 (38%), Positives = 53/106 (50%), Gaps = 15/106 (14%)
 Frame = -3

Query: 299 NDLTHKSSTALEDTMNRSTANKN------STTDSPKRPDVTDEHGSETDPPQIPSQNVET 138
           ND  H S    + T N S +++N      S T   K  ++  E   ETDP QIPS+N ET
Sbjct: 648 NDDLHVSQKDDQITTNPSVSDQNTVPVTESATKQHKADELEPEPEPETDPHQIPSRNTET 707

Query: 137 CKTSHMLTASEHV----DPEPTA-----HIVTIAQLPNKDYPTVPN 27
           C+T++MLTASEHV     P+  A     H+ T    P   YP   N
Sbjct: 708 CETNNMLTASEHVPNVQQPQNPATAAQSHVFTHNGQPVVQYPVQSN 753