BLASTX nr result

ID: Chrysanthemum21_contig00016263 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00016263
         (620 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KVH91463.1| Zinc finger, CCCH-type [Cynara cardunculus var. s...    65   5e-09
ref|XP_022028733.1| zinc finger CCCH domain-containing protein 2...    64   2e-08

>gb|KVH91463.1| Zinc finger, CCCH-type [Cynara cardunculus var. scolymus]
          Length = 327

 Score = 65.5 bits (158), Expect = 5e-09
 Identities = 45/102 (44%), Positives = 50/102 (49%), Gaps = 14/102 (13%)
 Frame = -1

Query: 530 VNELTSSVRNXXXXXXXXXXXXL------PRNMSTLRPGFDSLPSTPTR--------XXX 393
           VNELTSSVRN                   PR++S LRPG+ SLPSTPTR           
Sbjct: 221 VNELTSSVRNLQIGNGGRLSMSPMSGFCSPRSLSILRPGYTSLPSTPTRNSSRTCVNSFD 280

Query: 392 XXXXXXXXXXXXXXXXXXXRDIRAKIYAKLSRENSLAGRVDS 267
                              ++IRAKIYAKLSRENSL GRVDS
Sbjct: 281 LWDQGCTTEEPIMERVESGKEIRAKIYAKLSRENSLGGRVDS 322


>ref|XP_022028733.1| zinc finger CCCH domain-containing protein 20-like [Helianthus
           annuus]
 gb|OTG31713.1| putative zinc finger C-x8-C-x5-C-x3-H type family protein
           [Helianthus annuus]
          Length = 338

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 44/102 (43%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
 Frame = -1

Query: 530 VNELTSSVRNXXXXXXXXXXXXL----PRNMSTLRPGFDSLPSTPTRXXXXXXXXXXXXX 363
           VNEL SSVRN                 PR++STLRPG+ SLPSTPT              
Sbjct: 225 VNELASSVRNMQIGNRMSPMSGPGFGSPRSLSTLRPGYTSLPSTPTTRNPTRTGGNIFDL 284

Query: 362 XXXXXXXXX----------RDIRAKIYAKLSRENSLAGRVDS 267
                              ++IRAKIYAKLSRENSL GRVDS
Sbjct: 285 WENNNITREEPVMERVESGKEIRAKIYAKLSRENSLVGRVDS 326


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