BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00013005
         (624 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_023751729.1| protein PAF1 homolog [Lactuca sativa] >gi|13...    70   2e-10
gb|KVH97977.1| RNA polymerase II-associated, Paf1, partial [Cyna...    68   1e-09
ref|XP_022009861.1| protein PAF1 homolog [Helianthus annuus] >gi...    65   8e-09

>ref|XP_023751729.1| protein PAF1 homolog [Lactuca sativa]
 ref|XP_023751730.1| protein PAF1 homolog [Lactuca sativa]
          Length = 683

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 34/56 (60%), Positives = 43/56 (76%), Gaps = 6/56 (10%)
 Frame = +1

Query: 475 KAKENRHDGYRRSSNEIDNSKRRD-----HAGPSRHHSKPS-LPPMPGRKSNGPLG 624
           +AK++RHD +++ S E++NSK RD     HAGPSR HSKPS LPP+P RKSNGP G
Sbjct: 164 QAKQSRHDSFKKPSTELENSKWRDSSHSHHAGPSRQHSKPSTLPPLPARKSNGPPG 219


>gb|KVH97977.1| RNA polymerase II-associated, Paf1, partial [Cynara cardunculus
           var. scolymus]
          Length = 664

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 34/54 (62%), Positives = 42/54 (77%), Gaps = 6/54 (11%)
 Frame = +1

Query: 472 EKAKENRHDGYRRSSNEIDNSKRRD-----HAGPSRHHSKP-SLPPMPGRKSNG 615
           ++AKENRH+GY+R SN+ + SK R+     HAGPSR HSKP SLPP+P RKSNG
Sbjct: 168 DQAKENRHEGYKRPSNDPEASKWRNPSHSHHAGPSRQHSKPSSLPPVPARKSNG 221


>ref|XP_022009861.1| protein PAF1 homolog [Helianthus annuus]
 gb|OTG33215.1| putative RNA polymerase II associated factor Paf1 [Helianthus
           annuus]
          Length = 680

 Score = 65.5 bits (158), Expect = 8e-09
 Identities = 32/57 (56%), Positives = 42/57 (73%), Gaps = 1/57 (1%)
 Frame = +1

Query: 457 SKAKAEKAKENRHDGYRRSSNEIDNSKRRDHAGPSRHHSKPS-LPPMPGRKSNGPLG 624
           S   + + KE R DG++R SN+++++K   HAGPSR HSKPS LPP+P RKSNGP G
Sbjct: 142 SAPASNQTKEIRQDGHKRPSNDVESNKGH-HAGPSRQHSKPSNLPPVPARKSNGPSG 197