BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00010609
         (2424 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_835261.1| methyltransferase [Indian peanut clump virus] >...   856   0.0  
ref|NP_620040.1| hypothetical replicase [Peanut clump virus] >gi...   852   0.0  
ref|NP_835282.1| polymerase [Indian peanut clump virus]               856   0.0  
ref|NP_620047.1| replicase [Peanut clump virus] >gi|334350865|sp...   852   0.0  
gb|AUW36672.1| alpha a protein [Barley stripe mosaic virus]           330   2e-94
gb|AHY22367.1| alpha protein [Barley stripe mosaic virus]             330   2e-94
gb|AUW36673.1| alpha a protein [Barley stripe mosaic virus]           329   2e-94
gb|AIT18335.1| alpha a protein [Barley stripe mosaic virus]           329   2e-94
gb|AAA79147.1| alpha protein [Barley stripe mosaic virus]             329   3e-94
gb|AAA79146.1| alpha protein [Barley stripe mosaic virus]             329   3e-94
gb|AAA79145.1| alpha protein [Barley stripe mosaic virus]             327   1e-93
gb|AEP04414.1| alpha protein [Barley stripe mosaic virus]             327   1e-93
ref|YP_009047251.1| putative methyltransferase/helicase [Gentian...   328   2e-93
gb|ATO98263.1| alpha A protein [Lychnis ringspot virus]               325   6e-93
gb|AAA19829.1| alpha protein [Barley stripe mosaic virus]             325   1e-92
ref|NP_604474.1| alpha protein [Barley stripe mosaic virus] >gi|...   325   1e-92
gb|AUW36693.1| alpha a protein [Barley stripe mosaic virus]           324   2e-92
gb|AUW36674.1| alpha a protein [Barley stripe mosaic virus]           324   2e-92
gb|AAV67979.1| alpha protein [Barley stripe mosaic virus]             323   3e-92
ref|NP_059511.1| replicase [Oat golden stripe virus] >gi|6018640...   323   4e-91

>ref|NP_835261.1| methyltransferase [Indian peanut clump virus]
 emb|CAA67586.1| methyltransferase [Indian peanut clump virus]
          Length = 1130

 Score =  856 bits (2212), Expect = 0.0
 Identities = 423/581 (72%), Positives = 487/581 (83%), Gaps = 1/581 (0%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MAQ+NIY+DMIDRYVNDE VVQNLFMTAS+TT S+LHDVIADRAANHLK LE  Q QKEL
Sbjct: 1    MAQSNIYSDMIDRYVNDETVVQNLFMTASSTTKSLLHDVIADRAANHLKSLEKKQKQKEL 60

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR VL SES+NAL SLYPEFNV TSN+ERGSHTMAAVCRTLET+YIKSLLPV  TVVW
Sbjct: 61   VDVRRVLSSESLNALCSLYPEFNVITSNRERGSHTMAAVCRTLETLYIKSLLPVNDTVVW 120

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITPEF 1526
            DVGGNWLT++KY        ++  VHCCCPLL+YRDA RKQER+ ++E+FARNG    E 
Sbjct: 121  DVGGNWLTHVKY-------STNQDVHCCCPLLDYRDAMRKQERILSLELFARNGKEKTEE 173

Query: 1525 FEA-YTAVKTYEQQRMELLNAGKPEIAGNNHYCCNTFQTCNWEPEGENMKVAMGVHSVHD 1349
            F+A Y  ++ +E  R   ++AGK  +  N+ YCC+ FQ C +EP+   ++VAMGVHSV+D
Sbjct: 174  FDACYQQIRNFENTRRTAISAGK-NVVMNDRYCCDVFQNCAYEPDSGKLRVAMGVHSVYD 232

Query: 1348 MTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTDDTT 1169
            MTLQ++ DGLERK I+HFIGCFLFSPKLLLGQ+EG+LP           KIRFFF DDTT
Sbjct: 233  MTLQELVDGLERKKIEHFIGCFLFSPKLLLGQEEGELPFVNGRFKVKKGKIRFFFLDDTT 292

Query: 1168 HGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTEYSLLKTGFLSSD 989
            HGYEHDLNDYL+Y+RKSFVVAK GHVYMLE+F +RGDT+FFKLYDVTEYSL KTGFLS+ 
Sbjct: 293  HGYEHDLNDYLEYIRKSFVVAKCGHVYMLELFSMRGDTVFFKLYDVTEYSLSKTGFLSTL 352

Query: 988  YPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKANALQY 809
             P  D VFKAMPI  TDEVIVPLYWI +GEVVVER+YLPKSLV R MEWLMRNKANALQY
Sbjct: 353  LPTRDHVFKAMPIPNTDEVIVPLYWIENGEVVVERRYLPKSLVCRGMEWLMRNKANALQY 412

Query: 808  ETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILSVLRVK 629
            ETLLNY+VSTNVSA FNGCQVREGLKTDPW+L KLAMTLLVREEFNREKQKK+L +LR+ 
Sbjct: 413  ETLLNYLVSTNVSAVFNGCQVREGLKTDPWILCKLAMTLLVREEFNREKQKKVLEMLRLS 472

Query: 628  GAEEISLKQLVKGVFEKVFGPVSLKARVLKKLARWCGVEYGEMKYDIDVLPLYVEIEDCI 449
            G+E+ISLK++ KGVFEK FG VSLKARVL+ +ARWCGVE+G MKYD+DVLPLYVEIED I
Sbjct: 473  GSEQISLKRIFKGVFEKFFGSVSLKARVLRTVARWCGVEFGSMKYDVDVLPLYVEIEDSI 532

Query: 448  RLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKI 326
             LWRKGKLEGIE+YDM++EV R  DKK+D+++L   LK K+
Sbjct: 533  TLWRKGKLEGIEAYDMKDEVMRYNDKKQDVERLTQTLKDKV 573


>ref|NP_620040.1| hypothetical replicase [Peanut clump virus]
 emb|CAA55335.1| orf1 [Peanut clump virus]
          Length = 1145

 Score =  852 bits (2202), Expect = 0.0
 Identities = 429/604 (71%), Positives = 490/604 (81%), Gaps = 1/604 (0%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MAQ+NIY+DMIDRYVNDE VVQNLFMTAS+TT S+LHDVIADRAANHLK LE  Q QKEL
Sbjct: 1    MAQSNIYSDMIDRYVNDETVVQNLFMTASSTTKSLLHDVIADRAANHLKSLEKKQKQKEL 60

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR VL SES+NAL +LYPEF+V TSN ERGSHTMAAVCRTLET+YIKSLLPVK+TVVW
Sbjct: 61   VDVRRVLSSESLNALCALYPEFHVITSNCERGSHTMAAVCRTLETLYIKSLLPVKHTVVW 120

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNI-TPE 1529
            DVGGNWLT++KY        SD  VHCCCPLL+YRDA RKQER+ ++E+FARNG   T E
Sbjct: 121  DVGGNWLTHVKY-------ASDQNVHCCCPLLDYRDAMRKQERLLSLELFARNGKEKTEE 173

Query: 1528 FFEAYTAVKTYEQQRMELLNAGKPEIAGNNHYCCNTFQTCNWEPEGENMKVAMGVHSVHD 1349
            F E Y  +K +E QR   LNAG      NN YCC+ FQ C +EPE   M+VAMGVHSV+D
Sbjct: 174  FDECYKQIKAFELQRRAALNAGTAASC-NNKYCCDVFQDCAYEPEEGKMRVAMGVHSVYD 232

Query: 1348 MTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTDDTT 1169
            MTLQD+ +GLERK I+HFIGCFLFSPKLLLGQ+EG+LP           KIRFFF DDTT
Sbjct: 233  MTLQDLVNGLERKGIEHFIGCFLFSPKLLLGQEEGELPFVNGRFKVKKGKIRFFFLDDTT 292

Query: 1168 HGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTEYSLLKTGFLSSD 989
            HGYEHDLNDYLDY++KSFVVAK GHVYMLE+F VRGDT+FFKLYDVTEYSL +T  LSS 
Sbjct: 293  HGYEHDLNDYLDYIKKSFVVAKCGHVYMLELFSVRGDTIFFKLYDVTEYSLSRTRLLSSL 352

Query: 988  YPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKANALQY 809
             P  D VFKAMPI  T+EVIVPLYWI +GEVVVER+YLPKSLV R MEWLMRNKANALQY
Sbjct: 353  LPTRDHVFKAMPIPNTEEVIVPLYWIENGEVVVERRYLPKSLVCRGMEWLMRNKANALQY 412

Query: 808  ETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILSVLRVK 629
            ETLLNY+VSTNVSA FNGCQVREGLKTDPW+L KLAMTLLVREEFNREKQKKIL +LR+ 
Sbjct: 413  ETLLNYLVSTNVSAVFNGCQVREGLKTDPWILCKLAMTLLVREEFNREKQKKILEMLRMS 472

Query: 628  GAEEISLKQLVKGVFEKVFGPVSLKARVLKKLARWCGVEYGEMKYDIDVLPLYVEIEDCI 449
            G+E+ISLK + +GVF K FG VSLKARVLK +ARWCGVE+G MKYD++VLPLYVEIED +
Sbjct: 473  GSEQISLKSIFRGVFVKFFGSVSLKARVLKTVARWCGVEFGSMKYDVEVLPLYVEIEDSL 532

Query: 448  RLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKIXXXXXXXXXXX*KKLVAAH 269
             LWRKG+LEGIESYDM++EV R  +KK+D+++L   L+ K+            KK+ A  
Sbjct: 533  CLWRKGRLEGIESYDMKDEVLRYNEKKQDVERLTRSLEQKVNDGSASDTSSKLKKVAAFA 592

Query: 268  ILCA 257
            +L +
Sbjct: 593  VLAS 596


>ref|NP_835282.1| polymerase [Indian peanut clump virus]
          Length = 1657

 Score =  856 bits (2212), Expect = 0.0
 Identities = 423/581 (72%), Positives = 487/581 (83%), Gaps = 1/581 (0%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MAQ+NIY+DMIDRYVNDE VVQNLFMTAS+TT S+LHDVIADRAANHLK LE  Q QKEL
Sbjct: 1    MAQSNIYSDMIDRYVNDETVVQNLFMTASSTTKSLLHDVIADRAANHLKSLEKKQKQKEL 60

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR VL SES+NAL SLYPEFNV TSN+ERGSHTMAAVCRTLET+YIKSLLPV  TVVW
Sbjct: 61   VDVRRVLSSESLNALCSLYPEFNVITSNRERGSHTMAAVCRTLETLYIKSLLPVNDTVVW 120

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITPEF 1526
            DVGGNWLT++KY        ++  VHCCCPLL+YRDA RKQER+ ++E+FARNG    E 
Sbjct: 121  DVGGNWLTHVKY-------STNQDVHCCCPLLDYRDAMRKQERILSLELFARNGKEKTEE 173

Query: 1525 FEA-YTAVKTYEQQRMELLNAGKPEIAGNNHYCCNTFQTCNWEPEGENMKVAMGVHSVHD 1349
            F+A Y  ++ +E  R   ++AGK  +  N+ YCC+ FQ C +EP+   ++VAMGVHSV+D
Sbjct: 174  FDACYQQIRNFENTRRTAISAGK-NVVMNDRYCCDVFQNCAYEPDSGKLRVAMGVHSVYD 232

Query: 1348 MTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTDDTT 1169
            MTLQ++ DGLERK I+HFIGCFLFSPKLLLGQ+EG+LP           KIRFFF DDTT
Sbjct: 233  MTLQELVDGLERKKIEHFIGCFLFSPKLLLGQEEGELPFVNGRFKVKKGKIRFFFLDDTT 292

Query: 1168 HGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTEYSLLKTGFLSSD 989
            HGYEHDLNDYL+Y+RKSFVVAK GHVYMLE+F +RGDT+FFKLYDVTEYSL KTGFLS+ 
Sbjct: 293  HGYEHDLNDYLEYIRKSFVVAKCGHVYMLELFSMRGDTVFFKLYDVTEYSLSKTGFLSTL 352

Query: 988  YPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKANALQY 809
             P  D VFKAMPI  TDEVIVPLYWI +GEVVVER+YLPKSLV R MEWLMRNKANALQY
Sbjct: 353  LPTRDHVFKAMPIPNTDEVIVPLYWIENGEVVVERRYLPKSLVCRGMEWLMRNKANALQY 412

Query: 808  ETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILSVLRVK 629
            ETLLNY+VSTNVSA FNGCQVREGLKTDPW+L KLAMTLLVREEFNREKQKK+L +LR+ 
Sbjct: 413  ETLLNYLVSTNVSAVFNGCQVREGLKTDPWILCKLAMTLLVREEFNREKQKKVLEMLRLS 472

Query: 628  GAEEISLKQLVKGVFEKVFGPVSLKARVLKKLARWCGVEYGEMKYDIDVLPLYVEIEDCI 449
            G+E+ISLK++ KGVFEK FG VSLKARVL+ +ARWCGVE+G MKYD+DVLPLYVEIED I
Sbjct: 473  GSEQISLKRIFKGVFEKFFGSVSLKARVLRTVARWCGVEFGSMKYDVDVLPLYVEIEDSI 532

Query: 448  RLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKI 326
             LWRKGKLEGIE+YDM++EV R  DKK+D+++L   LK K+
Sbjct: 533  TLWRKGKLEGIEAYDMKDEVMRYNDKKQDVERLTQTLKDKV 573


>ref|NP_620047.1| replicase [Peanut clump virus]
 sp|Q84687.2|RDRP_PCV87 RecName: Full=Replicase large subunit; AltName: Full=RNA-directed RNA
            polymerase; Contains: RecName: Full=Replicase small
            subunit; AltName: Full=Methyltransferase/RNA helicase
          Length = 1672

 Score =  852 bits (2202), Expect = 0.0
 Identities = 429/604 (71%), Positives = 490/604 (81%), Gaps = 1/604 (0%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MAQ+NIY+DMIDRYVNDE VVQNLFMTAS+TT S+LHDVIADRAANHLK LE  Q QKEL
Sbjct: 1    MAQSNIYSDMIDRYVNDETVVQNLFMTASSTTKSLLHDVIADRAANHLKSLEKKQKQKEL 60

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR VL SES+NAL +LYPEF+V TSN ERGSHTMAAVCRTLET+YIKSLLPVK+TVVW
Sbjct: 61   VDVRRVLSSESLNALCALYPEFHVITSNCERGSHTMAAVCRTLETLYIKSLLPVKHTVVW 120

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNI-TPE 1529
            DVGGNWLT++KY        SD  VHCCCPLL+YRDA RKQER+ ++E+FARNG   T E
Sbjct: 121  DVGGNWLTHVKY-------ASDQNVHCCCPLLDYRDAMRKQERLLSLELFARNGKEKTEE 173

Query: 1528 FFEAYTAVKTYEQQRMELLNAGKPEIAGNNHYCCNTFQTCNWEPEGENMKVAMGVHSVHD 1349
            F E Y  +K +E QR   LNAG      NN YCC+ FQ C +EPE   M+VAMGVHSV+D
Sbjct: 174  FDECYKQIKAFELQRRAALNAGTAASC-NNKYCCDVFQDCAYEPEEGKMRVAMGVHSVYD 232

Query: 1348 MTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTDDTT 1169
            MTLQD+ +GLERK I+HFIGCFLFSPKLLLGQ+EG+LP           KIRFFF DDTT
Sbjct: 233  MTLQDLVNGLERKGIEHFIGCFLFSPKLLLGQEEGELPFVNGRFKVKKGKIRFFFLDDTT 292

Query: 1168 HGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTEYSLLKTGFLSSD 989
            HGYEHDLNDYLDY++KSFVVAK GHVYMLE+F VRGDT+FFKLYDVTEYSL +T  LSS 
Sbjct: 293  HGYEHDLNDYLDYIKKSFVVAKCGHVYMLELFSVRGDTIFFKLYDVTEYSLSRTRLLSSL 352

Query: 988  YPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKANALQY 809
             P  D VFKAMPI  T+EVIVPLYWI +GEVVVER+YLPKSLV R MEWLMRNKANALQY
Sbjct: 353  LPTRDHVFKAMPIPNTEEVIVPLYWIENGEVVVERRYLPKSLVCRGMEWLMRNKANALQY 412

Query: 808  ETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILSVLRVK 629
            ETLLNY+VSTNVSA FNGCQVREGLKTDPW+L KLAMTLLVREEFNREKQKKIL +LR+ 
Sbjct: 413  ETLLNYLVSTNVSAVFNGCQVREGLKTDPWILCKLAMTLLVREEFNREKQKKILEMLRMS 472

Query: 628  GAEEISLKQLVKGVFEKVFGPVSLKARVLKKLARWCGVEYGEMKYDIDVLPLYVEIEDCI 449
            G+E+ISLK + +GVF K FG VSLKARVLK +ARWCGVE+G MKYD++VLPLYVEIED +
Sbjct: 473  GSEQISLKSIFRGVFVKFFGSVSLKARVLKTVARWCGVEFGSMKYDVEVLPLYVEIEDSL 532

Query: 448  RLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKIXXXXXXXXXXX*KKLVAAH 269
             LWRKG+LEGIESYDM++EV R  +KK+D+++L   L+ K+            KK+ A  
Sbjct: 533  CLWRKGRLEGIESYDMKDEVLRYNEKKQDVERLTRSLEQKVNDGSASDTSSKLKKVAAFA 592

Query: 268  ILCA 257
            +L +
Sbjct: 593  VLAS 596


>gb|AUW36672.1| alpha a protein [Barley stripe mosaic virus]
          Length = 1138

 Score =  330 bits (845), Expect = 2e-94
 Identities = 203/588 (34%), Positives = 321/588 (54%), Gaps = 8/588 (1%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MA   I  ++I R    E+V+ NL  TAS++  S LHDV+       +  ++     ++ 
Sbjct: 1    MASDEIVRNLISR----EEVMGNLISTASSSVRSPLHDVLCSHVRTIVDSVDKKAVSRKH 56

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR  + SE +  L + YPE+ V++S  E G+H+MAA  R LET Y+  ++P+K T V+
Sbjct: 57   VDVRRNISSEELQMLMNAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVY 116

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITP-E 1529
            D+GGN       W +++K+ +D  +HCCCP+L+ RD+ R + RM AM+ + R     P  
Sbjct: 117  DIGGN-------WFSHMKFRADREIHCCCPILSMRDSERLETRMMAMQKYMRGSKDKPLR 169

Query: 1528 FFEAYTAVKTYEQQRMELLNAGKPE--IAGNNHYCCNTFQTC-NWEPEGENMKVAMGVHS 1358
                Y  +   +  R     AG+    +     +C NTFQ C    PEG  +K A+ VHS
Sbjct: 170  LLSRYQNILREQAVRTTAFTAGEVNAGVLDGEVFCENTFQDCVRRVPEG-FLKTAIAVHS 228

Query: 1357 VHDMTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTD 1178
            ++D+ +++ A  L+RK I    GCFLF P +L+GQKEG LP           +I+FFF +
Sbjct: 229  IYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGRIKFFFAN 288

Query: 1177 DTTHGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTE--YSLLKTG 1004
            D   GY HDL DYL YV K++V  K G V+ +E+  +RGDT+FFK+ DVT   Y +   G
Sbjct: 289  DPNAGYSHDLKDYLKYVEKTYVDIKDG-VFAIELMQMRGDTMFFKITDVTAAMYHMKYRG 347

Query: 1003 FLSSDYPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKA 824
                     D  FK +P+ +   V+VPL+   +  + +    LP++LV +   ++M+NK 
Sbjct: 348  M------KRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKNKE 401

Query: 823  NALQYETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILS 644
              L    L NY+ + N S  FNG QVR+G+K  P +++KLA+TL +RE+  R+++  I+S
Sbjct: 402  KDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENSIIS 461

Query: 643  VLRVKGAEEISLKQLVKGVFEKVFGPV-SLKARVLKKLARWCG-VEYGEMKYDIDVLPLY 470
                +   + +LK +       V   + S+   + K L  W G  E+    +DI    LY
Sbjct: 462  YFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYAEFDLTTFDICDPVLY 521

Query: 469  VEIEDCIRLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKI 326
            VEI D  ++ +KG++   E +D  EE ++   ++++   LA ++  K+
Sbjct: 522  VEIVDRYKIIQKGRIPLGEFFDCHEECEKYELREKEKNDLAVKMAQKV 569


>gb|AHY22367.1| alpha protein [Barley stripe mosaic virus]
          Length = 1139

 Score =  330 bits (845), Expect = 2e-94
 Identities = 213/632 (33%), Positives = 335/632 (53%), Gaps = 18/632 (2%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MA   I  ++I R    E+V+ NL  TAS++  S LHDV+       +  ++     ++ 
Sbjct: 1    MASDEIVRNLISR----EEVMGNLISTASSSVRSPLHDVLCSHVRTIVDSVDKKAVSRKH 56

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR  + SE +  L + YPE+ V++S  E G+H+MAA  R LET Y+  ++P+K T V+
Sbjct: 57   VDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKDTFVY 116

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITP-E 1529
            D+GGNW +++K+        +D  +HCCCP+L+ RD+ R + RM AM+ + R     P  
Sbjct: 117  DIGGNWFSHMKF-------RADREIHCCCPILSMRDSERLETRMMAMQKYMRGSKDKPLR 169

Query: 1528 FFEAYTAVKTYEQQRMELLNAGKPE--IAGNNHYCCNTFQTCNWE-PEGENMKVAMGVHS 1358
                Y  +   +  R     AG+    +     +C NTFQ C  E PEG  +K A+ VHS
Sbjct: 170  LLSRYQNILREQAARATAFVAGEVNAGVLDGEVFCENTFQDCVREVPEGF-LKTAIAVHS 228

Query: 1357 VHDMTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTD 1178
            ++D+ +++ A  L+RK I    GCFLF P +L+GQKEG LP           +I+FFF +
Sbjct: 229  IYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGRIKFFFAN 288

Query: 1177 DTTHGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTE--YSLLKTG 1004
            D   GY HDL DYL YV K++V  K G V+ +E+  +RGDT+FFK+ DVT   Y +   G
Sbjct: 289  DPNAGYSHDLKDYLKYVEKAYVDIKDG-VFAIELMQMRGDTMFFKITDVTAAMYHMKYRG 347

Query: 1003 FLSSDYPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKA 824
                     D  FK +P+ +   V+VPL+   +  + +    LP++LV +   ++M+NK 
Sbjct: 348  M------KRDETFKCIPMLKNSSVVVPLFSWDNHSLKITSGLLPRTLVEQGAAFIMKNKE 401

Query: 823  NALQYETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILS 644
              L    L NY+ + N S  FNG QVR+G+K  P +++KLA+TL +RE+  R+++  I+S
Sbjct: 402  KDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLFLREKVYRQRENSIIS 461

Query: 643  VLRVKGAEEISLKQLVKGVFEKVFGPV-SLKARVLKKLARWCG-VEYGEMKYDIDVLPLY 470
                +   + +LK +       V   + S+   + K L  W G  ++    +DI    LY
Sbjct: 462  HFEQEMLRDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYADFDLTTFDICDPVLY 521

Query: 469  VEIEDCIRLWRKGKLEGIESYDMEEEVK----RGLDKKEDIKKLATELKGKIXXXXXXXX 302
            VEI D  ++ +KG++   E +D  EE +    R  +K +   K+A ++ G +        
Sbjct: 522  VEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLAVKMAQKVTGTVTECEKDEG 581

Query: 301  XXX*K------KLVAAHILCALCDRENSTSQI 224
                       +L+  HI+ ALC   + TS +
Sbjct: 582  HLVQPTKQILVQLMMPHIVRALCKPRSPTSPL 613


>gb|AUW36673.1| alpha a protein [Barley stripe mosaic virus]
          Length = 1138

 Score =  329 bits (844), Expect = 2e-94
 Identities = 203/588 (34%), Positives = 320/588 (54%), Gaps = 8/588 (1%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MA   I  ++I R    E+V+ NL  TAS++  S LHDV+       +  ++     ++ 
Sbjct: 1    MASDEIVRNLISR----EEVMGNLISTASSSVRSPLHDVLCSHVRTIVDSVDKKAVSRKH 56

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR  + SE +  L + YPE+ V++S  E G+H+MAA  R LET Y+  ++P+K T V+
Sbjct: 57   VDVRRNISSEELQMLMNAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVY 116

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITP-E 1529
            D+GGN       W + +K+ +D  +HCCCP+L+ RD+ R + RM AM+ + R     P  
Sbjct: 117  DIGGN-------WFSRMKFRADREIHCCCPILSMRDSERLETRMMAMQKYMRGSKDKPLR 169

Query: 1528 FFEAYTAVKTYEQQRMELLNAGKPE--IAGNNHYCCNTFQTC-NWEPEGENMKVAMGVHS 1358
                Y  +   +  R     AG+    +     +C NTFQ C    PEG  +K A+ VHS
Sbjct: 170  LLSRYQNILREQAVRTTAFTAGEVNAGVLDGEVFCENTFQDCVRRVPEG-FLKTAIAVHS 228

Query: 1357 VHDMTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTD 1178
            ++D+ +++ A  L+RK I    GCFLF P +L+GQKEG LP           +I+FFF +
Sbjct: 229  IYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGRIKFFFAN 288

Query: 1177 DTTHGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTE--YSLLKTG 1004
            D   GY HDL DYL YV K++V  K G V+ +E+  +RGDT+FFK+ DVT   Y +   G
Sbjct: 289  DPNAGYSHDLKDYLKYVEKTYVDIKDG-VFAIELMQMRGDTMFFKITDVTAAMYHMKYRG 347

Query: 1003 FLSSDYPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKA 824
                     D  FK +P+ +   V+VPL+   +  + +    LP++LV +   ++M+NK 
Sbjct: 348  M------KRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKNKE 401

Query: 823  NALQYETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILS 644
              L    L NY+ + N S  FNG QVR+G+K  P +++KLA+TL +RE+  R+++  I+S
Sbjct: 402  KDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENSIIS 461

Query: 643  VLRVKGAEEISLKQLVKGVFEKVFGPV-SLKARVLKKLARWCG-VEYGEMKYDIDVLPLY 470
                +   + +LK +       V   + S+   + K L  W G  E+    +DI    LY
Sbjct: 462  YFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYAEFDLTTFDICDPVLY 521

Query: 469  VEIEDCIRLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKI 326
            VEI D  ++ +KG++   E +D  EE ++   ++++   LA ++  K+
Sbjct: 522  VEIVDRYKIIQKGRIPLGEFFDCHEECEKYELREKEKNDLAVKMAQKV 569


>gb|AIT18335.1| alpha a protein [Barley stripe mosaic virus]
          Length = 1138

 Score =  329 bits (844), Expect = 2e-94
 Identities = 212/632 (33%), Positives = 336/632 (53%), Gaps = 18/632 (2%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MA   I  ++I R    E+V+ NL  TAS++  S LHDV+       +  ++     ++ 
Sbjct: 1    MASDEIVRNLISR----EEVMGNLISTASSSVRSPLHDVLCSHVRTIVDSVDKKAVNRKH 56

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR  + SE +  L + YPE+ V++S  E G+H+MAA  R LET Y+  ++P+K T V+
Sbjct: 57   VDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVY 116

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITP-E 1529
            D+GGNW +++K+        +D  +HCCCP+L+ RD+ R + RM AM+ + R     P  
Sbjct: 117  DIGGNWFSHMKF-------RADREIHCCCPILSMRDSERLETRMMAMQKYMRGSKDKPLR 169

Query: 1528 FFEAYTAVKTYEQQRMELLNAGKPE--IAGNNHYCCNTFQTCNWE-PEGENMKVAMGVHS 1358
                Y  +   +  R     AG+    +     +C NTFQ C  + PEG  +K A+ VHS
Sbjct: 170  LLSRYQNILREQAARTTAFMAGEVNAGVLDGEVFCENTFQDCVRQVPEGF-LKTAIAVHS 228

Query: 1357 VHDMTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTD 1178
            ++D+ +++ A  L+RK I    GCFLF P +L+GQKEG LP           +I+FFF +
Sbjct: 229  IYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGRIKFFFAN 288

Query: 1177 DTTHGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTE--YSLLKTG 1004
            D   GY HDL DYL YV K++V  K G V+ +E+  +RGDT+FFK+ DVT   Y +   G
Sbjct: 289  DPNAGYSHDLKDYLKYVEKTYVDIKDG-VFAIELMQMRGDTMFFKITDVTAAMYHMKYRG 347

Query: 1003 FLSSDYPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKA 824
                     D  FK +P+ +   V+VPL+   +  + +    LP++LV +   ++M+NK 
Sbjct: 348  M------KRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKNKE 401

Query: 823  NALQYETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILS 644
              L    L NY+ + N S  FNG QVR+G+K  P +++KLA+TL +RE+  R+++  I+S
Sbjct: 402  KDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENSIIS 461

Query: 643  VLRVKGAEEISLKQLVKGVFEKVFGPV-SLKARVLKKLARWCG-VEYGEMKYDIDVLPLY 470
                +   + +LK +       V   + S+   + K L  W G  E+    +DI    LY
Sbjct: 462  YFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYAEFDLTTFDICDPVLY 521

Query: 469  VEIEDCIRLWRKGKLEGIESYDMEEEVK----RGLDKKEDIKKLATELKGKIXXXXXXXX 302
            VEI D  ++ +KG++   E +D  EE +    R  +K +   K+A ++ G +        
Sbjct: 522  VEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLAVKMAQKVTGTVTECEKDLG 581

Query: 301  XXX*K------KLVAAHILCALCDRENSTSQI 224
                       +LV ++++ ALC   + TS +
Sbjct: 582  PLVQPIKQILVQLVMSNLVRALCRPRSPTSPL 613


>gb|AAA79147.1| alpha protein [Barley stripe mosaic virus]
          Length = 1138

 Score =  329 bits (843), Expect = 3e-94
 Identities = 203/588 (34%), Positives = 322/588 (54%), Gaps = 8/588 (1%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MA   I  ++I R    E+V+ NL  TAS++  S LHDV+       +  ++     ++ 
Sbjct: 1    MASDEIVRNLISR----EEVMGNLISTASSSVRSPLHDVLCSHVRTIVDSVDKKAVSRKH 56

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR  + SE +  L + YPE+ V++S  E G+H+MAA  R LET Y+  ++P+K T V+
Sbjct: 57   VDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVY 116

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITP-E 1529
            D+GGNW +++K+        +D  +HCCCP+L+ RD+ R + RM AM+ + R     P  
Sbjct: 117  DIGGNWFSHMKF-------RADREIHCCCPILSMRDSERLETRMMAMQKYMRGSKDKPLR 169

Query: 1528 FFEAYTAVKTYEQQRMELLNAGKPE--IAGNNHYCCNTFQTCNWE-PEGENMKVAMGVHS 1358
                Y  +   +  R     AG+    +   + +C NTFQ C  + PEG  +K A+ VHS
Sbjct: 170  LLSRYQNILREQAARTTAFMAGEVNAGVLDGDVFCENTFQDCVRQVPEGF-LKTAIAVHS 228

Query: 1357 VHDMTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTD 1178
            ++D+ +++ A  L+RK I    GCFLF P +L+GQKEG LP           +I+FFF +
Sbjct: 229  IYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGRIKFFFAN 288

Query: 1177 DTTHGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTE--YSLLKTG 1004
            D   GY HDL DYL YV K++V  K G V+ +E+  +RGDT+FFK+ DVT   Y +   G
Sbjct: 289  DPNAGYSHDLKDYLKYVEKTYVDIKDG-VFAIELMQMRGDTMFFKITDVTAAMYHMKYRG 347

Query: 1003 FLSSDYPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKA 824
                     D  FK +P+ +   V+VPL+   +  + +    LP++LV +   ++M+NK 
Sbjct: 348  M------KRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKNKE 401

Query: 823  NALQYETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILS 644
              L    L NY+ + N S  FNG QVR+G+K  P +++KLA+TL +RE+  R+++  I+S
Sbjct: 402  KDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENSIIS 461

Query: 643  VLRVKGAEEISLKQLVKGVFEKVFGPV-SLKARVLKKLARWCG-VEYGEMKYDIDVLPLY 470
                +   + +LK +       V   + S+   + K L  W G  E+    +DI    LY
Sbjct: 462  YFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYAEFDLTTFDICDPVLY 521

Query: 469  VEIEDCIRLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKI 326
            VEI D  ++ +KG++   E +D  EE +    ++++   LA ++  K+
Sbjct: 522  VEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLAVKMAQKV 569


>gb|AAA79146.1| alpha protein [Barley stripe mosaic virus]
          Length = 1138

 Score =  329 bits (843), Expect = 3e-94
 Identities = 203/588 (34%), Positives = 322/588 (54%), Gaps = 8/588 (1%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MA   I  ++I R    E+V+ NL  TAS++  S LHDV+       +  ++     ++ 
Sbjct: 1    MASDEIVRNLISR----EEVMGNLISTASSSVRSPLHDVLCSHVRTIVDSVDKKAVSRKH 56

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR  + SE +  L + YPE+ V++S  E G+H+MAA  R LET Y+  ++P+K T V+
Sbjct: 57   VDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVY 116

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITP-E 1529
            D+GGNW +++K+        +D  +HCCCP+L+ RD+ R + RM AM+ + R     P  
Sbjct: 117  DIGGNWFSHMKF-------RADREIHCCCPILSMRDSERLETRMMAMQKYMRGSKDKPLR 169

Query: 1528 FFEAYTAVKTYEQQRMELLNAGKPE--IAGNNHYCCNTFQTCNWE-PEGENMKVAMGVHS 1358
                Y  +   +  R     AG+    +   + +C NTFQ C  + PEG  +K A+ VHS
Sbjct: 170  LLSRYQNILREQAARTTAFMAGEVNAGVLDGDVFCENTFQDCVRQVPEGF-LKTAIAVHS 228

Query: 1357 VHDMTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTD 1178
            ++D+ +++ A  L+RK I    GCFLF P +L+GQKEG LP           +I+FFF +
Sbjct: 229  IYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGRIKFFFAN 288

Query: 1177 DTTHGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTE--YSLLKTG 1004
            D   GY HDL DYL YV K++V  K G V+ +E+  +RGDT+FFK+ DVT   Y +   G
Sbjct: 289  DPNAGYSHDLKDYLKYVEKTYVDIKDG-VFAIELMQMRGDTMFFKITDVTAAMYHMKYRG 347

Query: 1003 FLSSDYPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKA 824
                     D  FK +P+ +   V+VPL+   +  + +    LP++LV +   ++M+NK 
Sbjct: 348  M------KRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKNKE 401

Query: 823  NALQYETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILS 644
              L    L NY+ + N S  FNG QVR+G+K  P +++KLA+TL +RE+  R+++  I+S
Sbjct: 402  KDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENSIIS 461

Query: 643  VLRVKGAEEISLKQLVKGVFEKVFGPV-SLKARVLKKLARWCG-VEYGEMKYDIDVLPLY 470
                +   + +LK +       V   + S+   + K L  W G  E+    +DI    LY
Sbjct: 462  YFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYAEFDLTTFDICDPVLY 521

Query: 469  VEIEDCIRLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKI 326
            VEI D  ++ +KG++   E +D  EE +    ++++   LA ++  K+
Sbjct: 522  VEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLAVKMAQKV 569


>gb|AAA79145.1| alpha protein [Barley stripe mosaic virus]
          Length = 1139

 Score =  327 bits (839), Expect = 1e-93
 Identities = 202/588 (34%), Positives = 321/588 (54%), Gaps = 8/588 (1%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MA   I  ++I R    E+V+ NL  TAS++  S LHDV+       +  ++     ++ 
Sbjct: 1    MASDEIVRNLISR----EEVMGNLISTASSSVRSPLHDVLCSHVRTIVDSVDKKAVSRKH 56

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR  + SE +  L + YPE+ V++S  E G+H+MAA  R LET Y+  ++P+K T V+
Sbjct: 57   VDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVY 116

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITP-E 1529
            D+GGN       W +++K+ +D  +HCCCP+L+ RD+ R + RM AM+ + R     P  
Sbjct: 117  DIGGN-------WFSHMKFRADREIHCCCPILSMRDSERLETRMMAMQKYMRGSKDKPLR 169

Query: 1528 FFEAYTAVKTYEQQRMELLNAGKPE--IAGNNHYCCNTFQTC-NWEPEGENMKVAMGVHS 1358
                Y  +   +  R     AG+ +  +     +C NTFQ C    PEG  +K A+ VHS
Sbjct: 170  LLSRYQNILREQAARTTAFMAGEVDAGVLDGEVFCENTFQDCVRRVPEG-FLKTAIAVHS 228

Query: 1357 VHDMTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTD 1178
            ++D+ +++ A  L+RK I    GCFLF P +L+GQKEG LP           +I+FFF +
Sbjct: 229  IYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGRIKFFFAN 288

Query: 1177 DTTHGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTE--YSLLKTG 1004
            D   GY HDL DYL YV K++V  + G V+ +E+  +RGDT+FFK+ DVT   Y +   G
Sbjct: 289  DPNAGYSHDLKDYLKYVEKTYVDIEDG-VFAIELMQMRGDTMFFKITDVTAAMYHMKYRG 347

Query: 1003 FLSSDYPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKA 824
                     D  FK +P+ +   V+VPL+   +  + +    LP++LV +   ++M+NK 
Sbjct: 348  M------KRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKNKE 401

Query: 823  NALQYETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILS 644
              L    L NY+ + N S  FNG QVR+G+K  P +++KLA+TL +RE+  R+++  I+S
Sbjct: 402  KDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENSIIS 461

Query: 643  VLRVKGAEEISLKQLVKGVFEKVFGPV-SLKARVLKKLARWCG-VEYGEMKYDIDVLPLY 470
                +   + +LK +       V   + S+   + K L  W G  E+    +DI    LY
Sbjct: 462  YFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYAEFDLTTFDICDPVLY 521

Query: 469  VEIEDCIRLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKI 326
            VEI D  ++ +KG++   E +D  EE +    ++++   LA ++  K+
Sbjct: 522  VEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLAVKMAQKV 569


>gb|AEP04414.1| alpha protein [Barley stripe mosaic virus]
          Length = 1139

 Score =  327 bits (839), Expect = 1e-93
 Identities = 202/588 (34%), Positives = 321/588 (54%), Gaps = 8/588 (1%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MA   I  ++I R    E+V+ NL  TAS++  S LHDV+       +  ++     ++ 
Sbjct: 1    MASDEIVRNLISR----EEVMGNLISTASSSVRSPLHDVLCSHVRTIVDSVDKKAVSRKH 56

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR  + SE +  L + YPE+ V++S  E G+H+MAA  R LET Y+  ++P+K T V+
Sbjct: 57   VDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVY 116

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITP-E 1529
            D+GGN       W +++K+ +D  +HCCCP+L+ RD+ R + RM AM+ + R     P  
Sbjct: 117  DIGGN-------WFSHMKFRADREIHCCCPILSMRDSERLETRMMAMQKYMRGSKDKPLR 169

Query: 1528 FFEAYTAVKTYEQQRMELLNAGKPE--IAGNNHYCCNTFQTC-NWEPEGENMKVAMGVHS 1358
                Y  +   +  R     AG+ +  +     +C NTFQ C    PEG  +K A+ VHS
Sbjct: 170  LLSRYQNILREQAARTTAFMAGEVDAGVLDGEVFCENTFQDCVRRVPEG-FLKTAIAVHS 228

Query: 1357 VHDMTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTD 1178
            ++D+ +++ A  L+RK I    GCFLF P +L+GQKEG LP           +I+FFF +
Sbjct: 229  IYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGRIKFFFAN 288

Query: 1177 DTTHGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTE--YSLLKTG 1004
            D   GY HDL DYL YV K++V  + G V+ +E+  +RGDT+FFK+ DVT   Y +   G
Sbjct: 289  DPNAGYSHDLKDYLKYVEKTYVDIEDG-VFAIELMQMRGDTMFFKITDVTAAMYHMKYRG 347

Query: 1003 FLSSDYPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKA 824
                     D  FK +P+ +   V+VPL+   +  + +    LP++LV +   ++M+NK 
Sbjct: 348  M------KRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKNKE 401

Query: 823  NALQYETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILS 644
              L    L NY+ + N S  FNG QVR+G+K  P +++KLA+TL +RE+  R+++  I+S
Sbjct: 402  KDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENSIIS 461

Query: 643  VLRVKGAEEISLKQLVKGVFEKVFGPV-SLKARVLKKLARWCG-VEYGEMKYDIDVLPLY 470
                +   + +LK +       V   + S+   + K L  W G  E+    +DI    LY
Sbjct: 462  YFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYAEFDLTTFDICDPVLY 521

Query: 469  VEIEDCIRLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKI 326
            VEI D  ++ +KG++   E +D  EE +    ++++   LA ++  K+
Sbjct: 522  VEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLAVKMAQKV 569


>ref|YP_009047251.1| putative methyltransferase/helicase [Gentian ovary ringspot virus]
 dbj|BAP18642.1| putative methyltransferase/helicase [Gentian ovary ringspot virus]
          Length = 1194

 Score =  328 bits (840), Expect = 2e-93
 Identities = 195/617 (31%), Positives = 336/617 (54%), Gaps = 49/617 (7%)
 Frame = -3

Query: 2041 DMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKELVDVRLVLC 1862
            +M+   ++ E V+  +  TA++ T S LH   +D  A  ++ +  T   K+ +DVR  + 
Sbjct: 6    EMMKNMLSSEAVINAVVTTAASNTRSPLHQEFSDYYATTIRGMTKTNQTKKTIDVRRTMS 65

Query: 1861 SESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVWDVGGNWLT 1682
              ++  LS+LYPE+NV +S  E G+H++AA CR LET  +  +LP K T VWD+GGNW+T
Sbjct: 66   PTTLQELSNLYPEYNVVSSGTESGTHSVAAACRKLETQLLLDMLPKKQTFVWDIGGNWVT 125

Query: 1681 NLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARN-GNITPEFFEAYTAV 1505
            ++K  L     + +P +HCCCP+L+ RDA RK+ R   +E FAR     TPEF   Y  V
Sbjct: 126  HMKKNL-----NDEPRIHCCCPILDARDAERKRTRFTNLERFARGLDKQTPEFKCDYEKV 180

Query: 1504 KTYEQQRMELLNAG--KPEIAGNNHYCCNTFQTCNWEP---EGEN-MKVAMGVHSVHDMT 1343
            K   ++    L  G    E      +C NTF+ C W+P   +GE+ ++ A+ +HS++D+ 
Sbjct: 181  KMDNERIKRALKRGDLSVEAMHGETFCQNTFEKCVWDPKTKDGESGLRYAVAIHSIYDIK 240

Query: 1342 LQDMADGLERKNIKHFIGCFLFSPKLLLGQK--EG----------------------DLP 1235
            L+D+   +E+K I+    CFLFSP +LLG++  EG                      +  
Sbjct: 241  LKDLVTAMEKKGIQQTFCCFLFSPYMLLGEECSEGAVHDVSVGGPLLFTGGRYCVLKNKT 300

Query: 1234 XXXXXXXXXXXKIRFFFTDDTTHGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDT 1055
                       ++RF+F+DD   GYEHD + YL+Y+RK FV++    ++ LE+  +RGDT
Sbjct: 301  KSMTHGLIGRDRVRFWFSDDPNMGYEHDYDSYLEYIRKGFVLSDDDTLFSLELMQIRGDT 360

Query: 1054 LFFKLYDVTEYSLLKTGFLS-----------SDYPVSDSV--FKAMPIGQTDEVIVPLYW 914
            +F K+ DV+EY    TG ++           +   +S+++  FK +P+ Q  + ++P+Y 
Sbjct: 361  MFLKITDVSEYQATLTGTMNVNGLRCGRDICNGDLLSENINGFKCIPVPQNADCLMPVYR 420

Query: 913  IVDGEVVVERKY--LPKSLVSRSMEWLMRNKANALQYETLLNYIVSTNVSAAFNGCQVRE 740
            + +    ++ K   +P  L  R  E+LMR     +  ++  + + S N S  FNG  VR 
Sbjct: 421  LNENSDTLDMKIVRIPNVLRKRIEEYLMRLNQGKMDLQSAKSMLASINNSIVFNGTHVRV 480

Query: 739  GLKTDPWVLAKLAMTLLVREEFNREKQKKILSVLRVKGAEEISLKQLVKGVF--EKVFGP 566
                +P +LA +A+T+  RE F R+++++++  L++   ++I +   V G F  +KV+  
Sbjct: 481  VDSVEPSLLADIAVTVTAREIFKRKEEEELMQQLKLHSKKDIGICD-VLGYFWKKKVWPK 539

Query: 565  VSLKARVLKKLARWCGVEYGEMKYDIDVLPLYVEIEDCIRLWRKGKLEGIE-SYDMEEEV 389
              +  + LK L++  G  +G+  ++I  LPL++ +E  +  W K   + +E  Y+M+ EV
Sbjct: 540  RGVYHKSLKWLSKLMGYNFGQDLFNIGDLPLFIPVESAVSAWYKSYQDEVEHMYNMDAEV 599

Query: 388  KRGLDKKEDIKKLATEL 338
            ++     +DI+K+  ++
Sbjct: 600  EKYNAMSDDIRKVTEKI 616


>gb|ATO98263.1| alpha A protein [Lychnis ringspot virus]
          Length = 1141

 Score =  325 bits (834), Expect = 6e-93
 Identities = 203/588 (34%), Positives = 314/588 (53%), Gaps = 9/588 (1%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MA   I  ++I R    E+V+ NL  TAS +  S LHDV+       +  +E     +  
Sbjct: 1    MASDEIVRNLISR----EEVMGNLISTASASVRSPLHDVLCTHVGTVINSVEKKCAGRRQ 56

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            +DVR  L S+ +  L   YPE+++ +S  E G+H+MAA  R LET Y+   +P + T++W
Sbjct: 57   IDVRRNLTSDELQTLIKDYPEYSIVSSACESGTHSMAACYRFLETEYLLDFVPKRETMIW 116

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITP-E 1529
            D+GGNW +++K+        SD  +HCCCP+L+ RD+ R + R   M+ F R       +
Sbjct: 117  DIGGNWFSHMKF-------RSDLNIHCCCPILSLRDSERFETRCMNMQRFMRGDREKSLQ 169

Query: 1528 FFEAYTAVKTYEQQRMELL---NAGKPEIAGNNHYCCNTFQTC-NWEPEGENMKVAMGVH 1361
             F  Y ++   EQ+R +L    N   P+      +C NTFQ C    PEG ++  A+ VH
Sbjct: 170  LFTKYLSILK-EQERRKLCFARNDVTPQQLDGEVFCENTFQECVRVAPEG-HLATAIAVH 227

Query: 1360 SVHDMTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFT 1181
            S +D++++ +    +RK I    GC LF P +L+GQKEGDLP           KI FFF 
Sbjct: 228  SCYDISVESLVSSCKRKGITQMYGCMLFPPSILIGQKEGDLPFVKGKFKIEKGKISFFFL 287

Query: 1180 DDTTHGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVT--EYSLLKT 1007
            +D   GY HDL+DYL Y  K+++   +G ++ +E+  +RGDT+FFK+ DVT   Y L   
Sbjct: 288  NDPNAGYTHDLSDYLKYFEKTYIDVPEG-IFSIELLQMRGDTMFFKITDVTAAAYHLKYR 346

Query: 1006 GFLSSDYPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNK 827
            G         D +FK +P+     V+VP++   +  + V    LP+++V +   + M+NK
Sbjct: 347  GI------KFDDIFKCVPMNAQTSVVVPVFSWDNSGLSVSSALLPRNIVEQGASYAMKNK 400

Query: 826  ANALQYETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKIL 647
               L    L NY+ S N S  FNG QVR+G K +P +L++LA+T+ +RE+  R ++ KI+
Sbjct: 401  EKDLTVSVLKNYLSSVNNSYIFNGSQVRQGEKVNPSLLSQLAVTIFLREKVYRVRETKIV 460

Query: 646  SVLRVKGAEEISLKQLVKGVF--EKVFGPVSLKARVLKKLARWCGVEYGEMKYDIDVLPL 473
                    E++SLK+L  GV   + V        +V   LARW G+      +DI   PL
Sbjct: 461  DHFEHLFKEDVSLKELFGGVVWGKNVKMVCDFYRKVKMDLARWFGLSVDPHAFDICDPPL 520

Query: 472  YVEIEDCIRLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGK 329
            Y EI+D   +  +G++     ++ EEEV+    +  + K LA  +  K
Sbjct: 521  YQEIKDRWEVNVRGEIPLSSFFNCEEEVEACEARIVERKLLAESIVNK 568


>gb|AAA19829.1| alpha protein [Barley stripe mosaic virus]
          Length = 1138

 Score =  325 bits (832), Expect = 1e-92
 Identities = 202/588 (34%), Positives = 318/588 (54%), Gaps = 8/588 (1%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MA   I  ++I R    E+V+ NL  TAS++  S LHDV+       +  +E     ++ 
Sbjct: 1    MASDEIVRNLISR----EEVMGNLISTASSSVRSPLHDVLCSHVRTIVDSVEKKAVSRKH 56

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR  + SE +  L + YPE+ V++S  E G+H+MAA  R LET Y+  ++P+K T V+
Sbjct: 57   VDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVY 116

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITP-E 1529
            D+GGN       W +++K+ +D  +HCCCP+L+ RD+ R + RM AM+ + R     P  
Sbjct: 117  DIGGN-------WFSHMKFRADREIHCCCPILSMRDSERLETRMMAMQKYMRGSKDKPLR 169

Query: 1528 FFEAYTAVKTYEQQRMELLNAGKPEIA--GNNHYCCNTFQTC-NWEPEGENMKVAMGVHS 1358
                Y  +   +  R     AG           +C NTFQ C    PEG  +K A+ VHS
Sbjct: 170  LLSRYQNILREQAARTTAFMAGDVNAGDLDGEVFCENTFQDCVRRVPEG-FLKTAIAVHS 228

Query: 1357 VHDMTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTD 1178
            ++D+ +++ A  L+RK I    GCFLF P +L+GQKEG LP           +I+FFF +
Sbjct: 229  IYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGRIKFFFAN 288

Query: 1177 DTTHGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTE--YSLLKTG 1004
            D   GY HDL DYL YV K++V  + G V+ +E+  +RGDT+FFK+ DVT   Y +   G
Sbjct: 289  DPNAGYSHDLKDYLKYVEKAYVDIEDG-VFAIELMQMRGDTMFFKITDVTAAMYHMKYRG 347

Query: 1003 FLSSDYPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKA 824
                     D  FK +P+ +   V+VPL+   +  + +    LP++LV +   ++M+NK 
Sbjct: 348  M------KRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKNKE 401

Query: 823  NALQYETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILS 644
              L    L NY+ + N S  FNG QVR+G+K  P +++KLA+TL +RE+  R+++  I+S
Sbjct: 402  KDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENSIIS 461

Query: 643  VLRVKGAEEISLKQLVKGVFEKVFGPV-SLKARVLKKLARWCG-VEYGEMKYDIDVLPLY 470
                +   + +LK +       V   + S+   + K L  W G  ++    +DI    LY
Sbjct: 462  YFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYADFDLTTFDICDPVLY 521

Query: 469  VEIEDCIRLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKI 326
            VEI D  ++ +KG++   E +D  EE +    ++++   LA ++  K+
Sbjct: 522  VEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLAAKMAQKV 569


>ref|NP_604474.1| alpha protein [Barley stripe mosaic virus]
 sp|P17595.1|ALPHA_BSMV RecName: Full=Alpha-A protein; Includes: RecName:
            Full=Methyltransferase; Includes: RecName:
            Full=NTPase/helicase
 gb|AAA46336.1| alpha protein [Barley stripe mosaic virus]
          Length = 1139

 Score =  325 bits (832), Expect = 1e-92
 Identities = 201/588 (34%), Positives = 320/588 (54%), Gaps = 8/588 (1%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MA   I  ++I R    E+V+ NL  TAS++  S LHDV+       +  ++     ++ 
Sbjct: 1    MASDEIVRNLISR----EEVMGNLISTASSSVRSPLHDVLCSHVRTIVDSVDKKAVSRKH 56

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
             DVR  + SE +  L + YPE+ V++S  E G+H+MAA  R LET Y+  ++P+K T V+
Sbjct: 57   EDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVY 116

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITP-E 1529
            D+GGNW +++K+        +D  +HCCCP+L+ RD+ R + RM AM+ + R     P  
Sbjct: 117  DIGGNWFSHMKF-------RADREIHCCCPILSMRDSERLETRMMAMQKYMRGSKDKPLR 169

Query: 1528 FFEAYTAVKTYEQQRMELLNAGKPE--IAGNNHYCCNTFQTC-NWEPEGENMKVAMGVHS 1358
                Y  +   +  R     AG+    +   + +C NTFQ C    PEG  +K A+ VHS
Sbjct: 170  LLSRYQNILREQAARTTAFMAGEVNAGVLDGDVFCENTFQDCVRRVPEGF-LKTAIAVHS 228

Query: 1357 VHDMTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTD 1178
            ++D+ +++ A  L+RK I    GCFLF P +L+GQKEG LP           +I+FFF +
Sbjct: 229  IYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGRIKFFFAN 288

Query: 1177 DTTHGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTE--YSLLKTG 1004
            D   GY HDL DYL YV K++V  + G V+ +E+  +RGDT+FFK+ DVT   Y +   G
Sbjct: 289  DPNAGYSHDLKDYLKYVEKTYVDIEDG-VFAIELMQMRGDTMFFKITDVTAAMYHMKYRG 347

Query: 1003 FLSSDYPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKA 824
                     D  FK +P+ +   V+VPL+   +  + +    LP++LV +   ++M+NK 
Sbjct: 348  M------KRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKNKE 401

Query: 823  NALQYETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILS 644
              L    L NY+ + N S  FNG QVR+G+K  P +++KLA+TL +RE+  R+++  I+S
Sbjct: 402  KDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENSIIS 461

Query: 643  VLRVKGAEEISLKQLVKGVFEKVFGPV-SLKARVLKKLARWCG-VEYGEMKYDIDVLPLY 470
                +   + +LK +       V   + S+   + K L  W G  E+    +DI    LY
Sbjct: 462  YFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYAEFDLTTFDICDPVLY 521

Query: 469  VEIEDCIRLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKI 326
            VEI D  ++ +KG++   E +D  EE +    ++++   LA ++  K+
Sbjct: 522  VEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLAVKMAQKV 569


>gb|AUW36693.1| alpha a protein [Barley stripe mosaic virus]
          Length = 1138

 Score =  324 bits (830), Expect = 2e-92
 Identities = 197/580 (33%), Positives = 317/580 (54%), Gaps = 8/580 (1%)
 Frame = -3

Query: 2041 DMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKELVDVRLVLC 1862
            +++   ++ E+V+ NL  TAS++  S LHDV+       +  ++     ++ VDVR  + 
Sbjct: 5    EIVRNPISREEVMGNLISTASSSVRSPLHDVLCSHVRTIVDSVDKKAVSRKHVDVRRNIS 64

Query: 1861 SESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVWDVGGNWLT 1682
            SE +  L + YPE+ V++S  E G+H+MAA  R LET Y+  ++P+K T V+D+GGN   
Sbjct: 65   SEELQMLMNAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVYDIGGN--- 121

Query: 1681 NLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITP-EFFEAYTAV 1505
                W +++K+ +D  +HCCCP+L+ RD+ R + RM AM+ + R     P      Y  +
Sbjct: 122  ----WFSHMKFRADREIHCCCPILSMRDSERLETRMMAMQKYMRGSKDKPLRLLSRYQNI 177

Query: 1504 KTYEQQRMELLNAGKPE--IAGNNHYCCNTFQTC-NWEPEGENMKVAMGVHSVHDMTLQD 1334
               +  R     AG+    +     +C NTFQ C    PEG  +K A+ VHS++D+ +++
Sbjct: 178  LREQAVRTTAFTAGEVNAGVLDGEVFCENTFQDCVRRVPEG-FLKTAIAVHSIYDIKVEE 236

Query: 1333 MADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTDDTTHGYEH 1154
             A  L+RK I    GCFL  P +L+GQKEG LP           +I+FFF +D   GY H
Sbjct: 237  FASALKRKGITQAYGCFLSPPAVLIGQKEGILPSVDGHYLVENGRIKFFFANDPNAGYSH 296

Query: 1153 DLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTE--YSLLKTGFLSSDYPV 980
            DL DYL YV K++V  K G V+ +E+  +RGDT+FFK+ DVT   Y +   G        
Sbjct: 297  DLKDYLKYVEKTYVDIKDG-VFAIELMQMRGDTMFFKITDVTAAMYHMKYRGM------K 349

Query: 979  SDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKANALQYETL 800
             D  FK +P+ +   V+VPL+   +  + +    LP++LV +   ++M+NK   L    L
Sbjct: 350  RDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKNKEKDLNVAVL 409

Query: 799  LNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILSVLRVKGAE 620
             NY+ + N S  FNG QVR+G+K  P +++KLA+TL +RE+  R+++  I+S    +   
Sbjct: 410  KNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENSIISYFEQEMLH 469

Query: 619  EISLKQLVKGVFEKVFGPV-SLKARVLKKLARWCG-VEYGEMKYDIDVLPLYVEIEDCIR 446
            + +LK +       V   + S+   + K L  W G  E+    +DI    LYVEI D  +
Sbjct: 470  DPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYAEFDLTTFDICDPVLYVEIVDRYK 529

Query: 445  LWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKI 326
              +KG++   E +D  EE ++   ++++   LA ++  K+
Sbjct: 530  TIQKGRIPLGEFFDCHEECEKYELREKEKNDLAVKMAQKV 569


>gb|AUW36674.1| alpha a protein [Barley stripe mosaic virus]
          Length = 1138

 Score =  324 bits (830), Expect = 2e-92
 Identities = 201/588 (34%), Positives = 319/588 (54%), Gaps = 8/588 (1%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MA   I  ++I R    E+V+ NL  TAS++  S LHDV+       +  ++     ++ 
Sbjct: 1    MASDEIVRNLISR----EEVMGNLISTASSSVRSPLHDVLCSHVRTIVDSVDKKAVSRKH 56

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR  + SE +  L + YPE+ V++S  E G+H+MAA  R LET Y+  ++P+K T V+
Sbjct: 57   VDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVY 116

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITP-E 1529
            D+GGN       W +++K+ +D  +HCCCP+L+ RD+ R + RM AM+ + R     P  
Sbjct: 117  DIGGN-------WFSHMKFRADREIHCCCPILSMRDSERLETRMMAMQKYMRGSKDKPLR 169

Query: 1528 FFEAYTAVKTYEQQRMELLNAGKPE--IAGNNHYCCNTFQTC-NWEPEGENMKVAMGVHS 1358
                Y  +   +  R     AG+    +     +C NTFQ C    PEG  +K A+ VHS
Sbjct: 170  LLSRYQNILREQAARTTAFMAGEVNAGVLDGEVFCENTFQDCVRRVPEG-FLKTAIAVHS 228

Query: 1357 VHDMTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTD 1178
            ++D+ +++ A  L+RK I    GCFLF P +L+GQKEG LP           +I+FFF +
Sbjct: 229  IYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGRIKFFFAN 288

Query: 1177 DTTHGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTE--YSLLKTG 1004
            D   GY HDL DYL YV K++V  + G V+ +E+  +RGDT+FFK+ DVT   Y +   G
Sbjct: 289  DPNAGYSHDLKDYLKYVEKTYVDIEDG-VFAIELMQMRGDTMFFKITDVTAAMYHMKYRG 347

Query: 1003 FLSSDYPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKA 824
                     D  FK +P+ +   V+VPL+   +  + +    LP++LV +   ++M+NK 
Sbjct: 348  M------KRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKNKE 401

Query: 823  NALQYETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILS 644
              L    L NY+ + N S  FNG QVR+G+K  P +++KLA+TL +RE+  R+++  I+S
Sbjct: 402  KDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENSIIS 461

Query: 643  VLRVKGAEEISLKQLVKGVFEKVFGPV-SLKARVLKKLARWCG-VEYGEMKYDIDVLPLY 470
                +   + +LK +       V   + S+   + K L  W G   +    +DI    LY
Sbjct: 462  YFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYAGFDLTTFDICDPVLY 521

Query: 469  VEIEDCIRLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKI 326
            VEI D  ++ +KG++   E +D  EE +    ++++   LA ++  K+
Sbjct: 522  VEIVDRYKIIQKGRMPLGEFFDCHEECENYELREKEKNDLAAKMAQKV 569


>gb|AAV67979.1| alpha protein [Barley stripe mosaic virus]
          Length = 1138

 Score =  323 bits (829), Expect = 3e-92
 Identities = 202/588 (34%), Positives = 318/588 (54%), Gaps = 8/588 (1%)
 Frame = -3

Query: 2065 MAQTNIYADMIDRYVNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQKEL 1886
            MA   I  ++I R    E+V+ NL  TAS++  S LHDV+       +  +E     ++ 
Sbjct: 1    MASDEIVRNLISR----EEVMGNLISTASSSVRSPLHDVLCSHVRTIVDSVEKKAVSRKH 56

Query: 1885 VDVRLVLCSESINALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVW 1706
            VDVR  + SE +  L + YPE+ V++S  E G+H+MAA  R LET Y+  ++P+K T V+
Sbjct: 57   VDVRRNISSEELQMLINAYPEYAVSSSACESGTHSMAACFRFLETEYLLDMVPMKETFVY 116

Query: 1705 DVGGNWLTNLKYWLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGNITP-E 1529
            D+GGN       W +++K+ +D  +HCCCP+L+ RD+ R + RM AM+ + R     P  
Sbjct: 117  DIGGN-------WFSHMKFRADREIHCCCPILSMRDSERLETRMMAMQKYMRGSKDKPLR 169

Query: 1528 FFEAYTAVKTYEQQRMELLNAGKPEIA--GNNHYCCNTFQTC-NWEPEGENMKVAMGVHS 1358
                Y  +   +  R     AG+          +C NTFQ C    PEG  +K A+ VHS
Sbjct: 170  LLSRYQNILREQAARTTAFMAGEVNAGDLDGEVFCENTFQDCVRGVPEG-FLKTAIAVHS 228

Query: 1357 VHDMTLQDMADGLERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTD 1178
            ++D+ +++ A  L+RK I    GCFLF P +L+GQKEG LP           +I+FFF +
Sbjct: 229  IYDIKVEEFASALKRKGITQAYGCFLFPPAVLIGQKEGILPSVDGHYLVENGRIKFFFAN 288

Query: 1177 DTTHGYEHDLNDYLDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTE--YSLLKTG 1004
            D   GY HDL DYL YV K++V  + G V  +E+  +RGDT+FFK+ DVT   Y +   G
Sbjct: 289  DPNAGYSHDLKDYLKYVEKAYVDIEDG-VSAIELMQMRGDTMFFKITDVTAAMYHMKYRG 347

Query: 1003 FLSSDYPVSDSVFKAMPIGQTDEVIVPLYWIVDGEVVVERKYLPKSLVSRSMEWLMRNKA 824
                     D  FK +P+ +   V+VPL+   +  + +    LP++LV +   ++M+NK 
Sbjct: 348  M------KRDETFKCIPLLKNSSVVVPLFSWDNRSLKITSGLLPRTLVEQGAAFIMKNKE 401

Query: 823  NALQYETLLNYIVSTNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILS 644
              L    L NY+ + N S  FNG QVR+G+K  P +++KLA+TL +RE+  R+++  I+S
Sbjct: 402  KDLNVAVLKNYLSAVNNSYIFNGSQVRDGVKIAPDLISKLAVTLYLREKVYRQRENSIIS 461

Query: 643  VLRVKGAEEISLKQLVKGVFEKVFGPV-SLKARVLKKLARWCG-VEYGEMKYDIDVLPLY 470
                +   + +LK +       V   + S+   + K L  W G  ++    +DI    LY
Sbjct: 462  YFEQEMLHDPNLKAMFGDFLWFVPNTLSSVWKNMRKSLMEWFGYADFDLTTFDICDPVLY 521

Query: 469  VEIEDCIRLWRKGKLEGIESYDMEEEVKRGLDKKEDIKKLATELKGKI 326
            VEI D  ++ +KG++   E +D  EE +    ++++   LA ++  K+
Sbjct: 522  VEIVDRYKIIQKGRIPLGEFFDCHEECENYELREKEKNDLALKMAQKV 569


>ref|NP_059511.1| replicase [Oat golden stripe virus]
 emb|CAB57883.1| replicase [Oat golden stripe virus]
          Length = 1345

 Score =  323 bits (827), Expect = 4e-91
 Identities = 203/613 (33%), Positives = 324/613 (52%), Gaps = 8/613 (1%)
 Frame = -3

Query: 2023 VNDEQVVQNLFMTASTTTNSMLHDVIADRAANHLKILETTQNQK--ELVDVRLVLCSESI 1850
            +N+E+VV+    T++T TNS LH  + +      + L+T +NQK  + +DVR  L  E +
Sbjct: 12   INEEEVVRAAIATSATRTNSELHRTVCEHIRG--QFLDTVENQKTKKKIDVRRDLTQEQL 69

Query: 1849 NALSSLYPEFNVTTSNQERGSHTMAAVCRTLETMYIKSLLPVKYTVVWDVGGNWLTNLKY 1670
              L+ LYPE ++ TSN ERG+H+ AA  R +ET  I S +P K   V+D+GGNW T+LK 
Sbjct: 70   QLLNDLYPERHIVTSNCERGTHSFAAASRKIETDLILSRIP-KNANVYDIGGNWATHLKR 128

Query: 1669 WLTNLKYDSDPFVHCCCPLLNYRDAYRKQERMFAMEVFARNGN-ITPEFFEAYTAVKTYE 1493
               +L+      VHCCCP+L++RDA RK  R  ++E F  + N + PE  E    ++  E
Sbjct: 129  --KDLRK-----VHCCCPILDFRDAQRKTTRWLSVEKFITDRNELMPEVGEKLKEIQEDE 181

Query: 1492 QQRMELLNAG--KPEIAGNNHYCCNTFQTCNWEPEGENMKVAMGVHSVHDMTLQDMADGL 1319
                  L  G  +P+      YC N F+ C ++ E      AM +HS++D+ L D+A+ +
Sbjct: 182  NFISGNLRKGLVEPKFLTGKWYCENKFEDCVFKAE---KAYAMAIHSIYDIALDDLANAM 238

Query: 1318 ERKNIKHFIGCFLFSPKLLLGQKEGDLPXXXXXXXXXXXKIRFFFTDDTTHGYEHDLNDY 1139
            E K IK+ +G FLFS  +L+G+K G++             +++ F DDT  GY+H++   
Sbjct: 239  EEKRIKYLMGTFLFSVDMLIGKKRGEMTTVDGFYEIDGEDVKYGFYDDTNCGYKHNMQQL 298

Query: 1138 LDYVRKSFVVAKKGHVYMLEIFGVRGDTLFFKLYDVTEYSLLKTGFLSSDYPVSDSVFKA 959
            ++Y+ ++FV AK G VY LE+   RGD +FF + D TE  +             D  FK 
Sbjct: 299  MEYLTRTFVKAKAGSVYYLELTEQRGDVMFFSMTDATEARMHGV--------AQDESFKC 350

Query: 958  MPIGQTDEVIVPLYWI--VDGEVVVERKYLPKSLVSRSMEWLMRNKANALQYETLLNYIV 785
            +PI   D V+ PL+ +      +V     L ++ V R++E+  R K N L  ET+ +Y+ 
Sbjct: 351  IPIDSKDNVVFPLFELDKRTDVLVFSEIILSRTFVRRAVEYTARLKPNQLNAETVNSYLT 410

Query: 784  STNVSAAFNGCQVREGLKTDPWVLAKLAMTLLVREEFNREKQKKILSVLRVKGAEEISLK 605
            STN +    G   +   K D  ++ ++  TL+V  E    +QK++L+ LR++  ++++  
Sbjct: 411  STNNTVIIGGSAKKTVEKVDALLIQQITTTLIVWTELMNARQKRVLTQLRLQMKDDVNFS 470

Query: 604  QLVKGVFEKVFGPVSLKARVLKKLARWCGVEYGEMKYDIDVLPLYVEIEDCIRLWRKGKL 425
             L +  F KVFG VS   + L+  ARW    +G    +   +PLYVEI D ++LW++   
Sbjct: 471  SLAQAAFHKVFGKVSTYQKALRVFARWISYCHGSDAIEFRNVPLYVEITDRVKLWKQHAP 530

Query: 424  EGIESYDMEEEVKRGLDKKEDI-KKLATELKGKIXXXXXXXXXXX*KKLVAAHILCALCD 248
                S+D+E     GLD K ++ K+L  E K                + VA+  L  LC 
Sbjct: 531  NHGFSFDLE-----GLDAKIELHKELERERKA-------------ISEYVASDKLGELCP 572

Query: 247  RENSTSQIYQLQE 209
            +E     + +++E
Sbjct: 573  KEVDAGSVTEVRE 585