BLASTX nr result

ID: Chrysanthemum21_contig00010050 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00010050
         (394 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KVH91696.1| Tetratricopeptide-like helical [Cynara cardunculu...    77   6e-14
ref|XP_022029276.1| uncharacterized transmembrane protein DDB_G0...    76   2e-13
ref|XP_023753896.1| uncharacterized protein DDB_G0283357 [Lactuc...    75   4e-13

>gb|KVH91696.1| Tetratricopeptide-like helical [Cynara cardunculus var. scolymus]
          Length = 525

 Score = 77.4 bits (189), Expect = 6e-14
 Identities = 57/146 (39%), Positives = 67/146 (45%), Gaps = 23/146 (15%)
 Frame = +3

Query: 24  TGSKANVGSKTSVPAVSGGDEFGGFQNAAKSGGNG-------------SQSTFGDFGFGG 164
           TG KA    KT+V + SG D FG FQNA+K   N              SQS   DFGFGG
Sbjct: 233 TGLKA---VKTNVSSKSGDDVFGSFQNASKPSTNAFPSTTSFTGLGMNSQSKVDDFGFGG 289

Query: 165 MGNQAXXXXXXXXXXXXXXXTF----------DEFGFGGVGNQASVQSSVGNDFDVLFPX 314
           M NQ                +           D+FGFGG+ N   VQSS GNDFDVLF  
Sbjct: 290 MQNQPSVQSSGGNVFQSNTSSMGSGMNSQSKVDDFGFGGMKNPPPVQSSGGNDFDVLF-- 347

Query: 315 XXXXXXXXXXXXXXDNFVNEQFAGAE 392
                         +NF+++QFAGAE
Sbjct: 348 SSSSASAGNASKDSENFMSQQFAGAE 373


>ref|XP_022029276.1| uncharacterized transmembrane protein DDB_G0289901 [Helianthus
           annuus]
 gb|OTG32212.1| putative tetratricopeptide repeat (TPR)-like superfamily protein
           [Helianthus annuus]
          Length = 546

 Score = 76.3 bits (186), Expect = 2e-13
 Identities = 57/157 (36%), Positives = 70/157 (44%), Gaps = 27/157 (17%)
 Frame = +3

Query: 3   KGSGGMKTGSKANVGSKTSVPAVSGGDEFGGFQNAAK--------------SGGNGSQST 140
           K + GMK GSK+      + P  SG D FG FQNA+K                G GSQ+ 
Sbjct: 243 KPAAGMKAGSKS------TAPKASGDDVFGTFQNASKPSASSFSSNNTSFTGSGIGSQAK 296

Query: 141 FGDFGFG-------GMGNQAXXXXXXXXXXXXXXX------TFDEFGFGGVGNQASVQSS 281
             DFGFG       GMG+Q+                       D+FGFGG+ +Q  VQSS
Sbjct: 297 LDDFGFGQPPVQSSGMGSQSKMDDFDFGQPSVQSSGIGSQSKMDDFGFGGIPSQPPVQSS 356

Query: 282 VGNDFDVLFPXXXXXXXXXXXXXXXDNFVNEQFAGAE 392
            GNDFD+LF                + F N+QFAGAE
Sbjct: 357 GGNDFDMLF--SSSSASGGNASKASEAFANQQFAGAE 391


>ref|XP_023753896.1| uncharacterized protein DDB_G0283357 [Lactuca sativa]
 ref|XP_023753905.1| uncharacterized protein DDB_G0283357 [Lactuca sativa]
 gb|PLY99184.1| hypothetical protein LSAT_6X78121 [Lactuca sativa]
          Length = 501

 Score = 75.1 bits (183), Expect = 4e-13
 Identities = 54/137 (39%), Positives = 63/137 (45%), Gaps = 13/137 (9%)
 Frame = +3

Query: 21  KTGSKANVGSKTSVPAVSGGDEFGGFQNAAK-------------SGGNGSQSTFGDFGFG 161
           K  S    G+KTS P  SG D FG FQNA+K             S G+ SQ    DFGFG
Sbjct: 229 KPASGTKSGNKTSKPTKSGDDMFGSFQNASKDSKPNTNPSFTGSSMGSHSQPKVDDFGFG 288

Query: 162 GMGNQAXXXXXXXXXXXXXXXTFDEFGFGGVGNQASVQSSVGNDFDVLFPXXXXXXXXXX 341
             GN +                 D+FGF G  NQ  VQSS GNDFD+LF           
Sbjct: 289 -FGNISNPPPVQSSK-------LDDFGFNGKQNQPPVQSSTGNDFDILF---------AS 331

Query: 342 XXXXXDNFVNEQFAGAE 392
                +N V++QFAGAE
Sbjct: 332 SSKDSENLVSQQFAGAE 348


Top