BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00007798
         (1890 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_023746025.1| RNA polymerase sigma factor sigF, chloroplas...   810   0.0  
ref|XP_022000794.1| RNA polymerase sigma factor sigF, chloroplas...   808   0.0  
gb|PLY64601.1| hypothetical protein LSAT_6X27301 [Lactuca sativa]     801   0.0  
gb|KVH90482.1| RNA polymerase sigma-70 [Cynara cardunculus var. ...   762   0.0  
ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF,...   493   e-165
ref|XP_023900784.1| RNA polymerase sigma factor sigF, chloroplas...   492   e-164
ref|XP_019250683.1| PREDICTED: RNA polymerase sigma factor sigF,...   487   e-162
ref|XP_016487689.1| PREDICTED: RNA polymerase sigma factor sigF,...   485   e-162
dbj|GAV75806.1| Sigma70_r3 domain-containing protein/Sigma70_r2 ...   484   e-162
ref|XP_009621232.1| PREDICTED: RNA polymerase sigma factor sigF,...   484   e-162
ref|XP_020422238.1| RNA polymerase sigma factor sigF, chloroplas...   484   e-161
ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF,...   484   e-161
ref|XP_011094631.1| RNA polymerase sigma factor sigF, chloroplas...   483   e-161
ref|XP_021827462.1| RNA polymerase sigma factor sigF, chloroplas...   483   e-161
emb|CBI32760.3| unnamed protein product, partial [Vitis vinifera]     482   e-161
ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF,...   482   e-161
gb|POO01707.1| RNA polymerase sigma factor [Trema orientalis]         480   e-160
ref|XP_020422239.1| RNA polymerase sigma factor sigF, chloroplas...   480   e-160
ref|XP_019077288.1| PREDICTED: RNA polymerase sigma factor sigF,...   479   e-159
ref|XP_009794392.1| PREDICTED: RNA polymerase sigma factor sigF,...   478   e-159

>ref|XP_023746025.1| RNA polymerase sigma factor sigF, chloroplastic [Lactuca sativa]
          Length = 563

 Score =  810 bits (2093), Expect = 0.0
 Identities = 431/550 (78%), Positives = 470/550 (85%), Gaps = 14/550 (2%)
 Frame = -1

Query: 1890 LSLPPRTHLKQLPHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQT 1711
            LSLPPRT LKQ P PPSALK  EP+AP HSSMLATTLAQHFPTSVLIQEQRRESKPLLQT
Sbjct: 14   LSLPPRTQLKQSPPPPSALKFCEPSAPAHSSMLATTLAQHFPTSVLIQEQRRESKPLLQT 73

Query: 1710 LKEEKSSPETVDND--EVDAISSDQYLKEFQSQLLQWPGLW--LPS-HTREKSLSS-STM 1549
            +K+EK+S    D+   EVD  SSD+YLKEFQ QLLQWPGLW  LPS HTREK LS  +T 
Sbjct: 74   IKDEKTSQIGADSSTHEVDPTSSDEYLKEFQCQLLQWPGLWYMLPSSHTREKPLSPLTTT 133

Query: 1548 QP--------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSLVSTNPG 1393
            QP        MD E++QV+ LAKKALSAS EAASL DD ES+GVD DNS+ SSL S +  
Sbjct: 134  QPVPNGSKKLMDVEMQQVLDLAKKALSASKEAASLADDGESLGVDLDNSITSSLGSRHQT 193

Query: 1392 ELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANLHDPLRM 1213
            EL+TKKVKFVKSTR  ERQSKRRKG+KSNV++RE+  STKPE EKKTSYKD+NLHDPLRM
Sbjct: 194  ELQTKKVKFVKSTRHQERQSKRRKGTKSNVVIRETKNSTKPELEKKTSYKDSNLHDPLRM 253

Query: 1212 FLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLSSHEL 1033
            FLARPVTR          LI +IK GM+LEEARSRFH+QFNREPTLVEWAEAA+LSSHEL
Sbjct: 254  FLARPVTRELLTSKEELQLIVHIKAGMRLEEARSRFHDQFNREPTLVEWAEAANLSSHEL 313

Query: 1032 KSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAGC 853
            KSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAGC
Sbjct: 314  KSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAGC 373

Query: 852  RFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPTQKQIAD 673
            RFATYAYWWIRQSIRRAIFQNSKLIRLPEGVY ++YKVSEAKR CIREGNH+P+QKQIA+
Sbjct: 374  RFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYNLLYKVSEAKRVCIREGNHDPSQKQIAE 433

Query: 672  QAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPDASASKQIMRNHIT 493
            QAGMT+EKLQKLRS+QKITLSLQKP++ ND+              PD S SKQ+MRNHI+
Sbjct: 434  QAGMTLEKLQKLRSVQKITLSLQKPIYPNDTTTYEEITPDTTIDSPDTSVSKQVMRNHIS 493

Query: 492  NLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLKQYSESH 313
            NLLSVLNPKERKVIRLRYGIG EVRKSLADIGI+LGVSKERIRQ+ESR+LFKLKQYSES 
Sbjct: 494  NLLSVLNPKERKVIRLRYGIGGEVRKSLADIGIILGVSKERIRQLESRSLFKLKQYSESQ 553

Query: 312  GLDAYKELLI 283
            GLDAYK+LLI
Sbjct: 554  GLDAYKDLLI 563


>ref|XP_022000794.1| RNA polymerase sigma factor sigF, chloroplastic [Helianthus annuus]
 gb|OTG01248.1| putative RNApolymerase sigma-subunit F [Helianthus annuus]
          Length = 566

 Score =  808 bits (2086), Expect = 0.0
 Identities = 435/554 (78%), Positives = 468/554 (84%), Gaps = 18/554 (3%)
 Frame = -1

Query: 1890 LSLPPRTHLKQLPHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQT 1711
            LSLPPRT LKQ PHPPSALKLYEP AP HSSMLAT+LAQHFPTSVLIQEQR ES+PLLQT
Sbjct: 13   LSLPPRTQLKQSPHPPSALKLYEPTAPAHSSMLATSLAQHFPTSVLIQEQRPESRPLLQT 72

Query: 1710 LKEEKSSPETVDND-----EVDAISSDQYLKEFQSQLLQWPGLWLPS-HTREKSLSSSTM 1549
            +K++K+S   +D+      EVDAISSD+YLKEFQSQLLQWPGLWLPS   RE +LSSS  
Sbjct: 73   IKDDKTSQAIIDSRQLGACEVDAISSDRYLKEFQSQLLQWPGLWLPSSEKRENTLSSSVT 132

Query: 1548 QPM--------DAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASS---LVST 1402
            QP+        + E+++VIALAK+ALSAS EAASLVD+ ES  VD DNS  +S   L ST
Sbjct: 133  QPVPNGTETNINIEMEKVIALAKQALSASKEAASLVDNDESFKVDVDNSKVNSTLSLGST 192

Query: 1401 NPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPE-PEKKTSYKDANLHD 1225
            +  EL+TKKVKFVKSTRLLERQSKRRKGSKSNVIVRES +STK + PEKKTSYKDANLHD
Sbjct: 193  SSAELQTKKVKFVKSTRLLERQSKRRKGSKSNVIVRESTSSTKTDLPEKKTSYKDANLHD 252

Query: 1224 PLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLS 1045
            PLR FLARPVTR          LIA+IK GMKLEE R R H Q+ REPTLVEWAEAASL+
Sbjct: 253  PLRTFLARPVTRELLNSKEELELIAHIKCGMKLEEVRCRLHTQYGREPTLVEWAEAASLN 312

Query: 1044 SHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKP 865
              +LKSQ+HLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKP
Sbjct: 313  CQDLKSQVHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKP 372

Query: 864  QAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPTQK 685
            QAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKR  IREGNHEPTQK
Sbjct: 373  QAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRLIIREGNHEPTQK 432

Query: 684  QIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPDASASKQIMR 505
            QIADQAGMTVEKLQKL+SIQKITLSLQKP+WANDS              PD  ASKQ+MR
Sbjct: 433  QIADQAGMTVEKLQKLKSIQKITLSLQKPIWANDSTTYEEITPDTTMDSPDDCASKQLMR 492

Query: 504  NHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLKQY 325
            NHI NLL VLN KERKVIRLRYGIGCEVRKSLADIGIM+GV+KERIRQVESRALFKLKQY
Sbjct: 493  NHINNLLGVLNQKERKVIRLRYGIGCEVRKSLADIGIMMGVTKERIRQVESRALFKLKQY 552

Query: 324  SESHGLDAYKELLI 283
            SES GLDAYK+LLI
Sbjct: 553  SESQGLDAYKDLLI 566


>gb|PLY64601.1| hypothetical protein LSAT_6X27301 [Lactuca sativa]
          Length = 575

 Score =  801 bits (2070), Expect = 0.0
 Identities = 431/562 (76%), Positives = 470/562 (83%), Gaps = 26/562 (4%)
 Frame = -1

Query: 1890 LSLPPRTHLKQLPHPPS------------ALKLYEPAAPTHSSMLATTLAQHFPTSVLIQ 1747
            LSLPPRT LKQ P PPS            ALK  EP+AP HSSMLATTLAQHFPTSVLIQ
Sbjct: 14   LSLPPRTQLKQSPPPPSGPLPNTIKNAIAALKFCEPSAPAHSSMLATTLAQHFPTSVLIQ 73

Query: 1746 EQRRESKPLLQTLKEEKSSPETVDND--EVDAISSDQYLKEFQSQLLQWPGLW--LPS-H 1582
            EQRRESKPLLQT+K+EK+S    D+   EVD  SSD+YLKEFQ QLLQWPGLW  LPS H
Sbjct: 74   EQRRESKPLLQTIKDEKTSQIGADSSTHEVDPTSSDEYLKEFQCQLLQWPGLWYMLPSSH 133

Query: 1581 TREKSLSS-STMQP--------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDN 1429
            TREK LS  +T QP        MD E++QV+ LAKKALSAS EAASL DD ES+GVD DN
Sbjct: 134  TREKPLSPLTTTQPVPNGSKKLMDVEMQQVLDLAKKALSASKEAASLADDGESLGVDLDN 193

Query: 1428 SVASSLVSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTS 1249
            S+ SSL S +  EL+TKKVKFVKSTR  ERQSKRRKG+KSNV++RE+  STKPE EKKTS
Sbjct: 194  SITSSLGSRHQTELQTKKVKFVKSTRHQERQSKRRKGTKSNVVIRETKNSTKPELEKKTS 253

Query: 1248 YKDANLHDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLVE 1069
            YKD+NLHDPLRMFLARPVTR          LI +IK GM+LEEARSRFH+QFNREPTLVE
Sbjct: 254  YKDSNLHDPLRMFLARPVTRELLTSKEELQLIVHIKAGMRLEEARSRFHDQFNREPTLVE 313

Query: 1068 WAEAASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLM 889
            WAEAA+LSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLM
Sbjct: 314  WAEAANLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLM 373

Query: 888  RSVQKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIRE 709
            RSVQKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVY ++YKVSEAKR CIRE
Sbjct: 374  RSVQKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYNLLYKVSEAKRVCIRE 433

Query: 708  GNHEPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPDA 529
            GNH+P+QKQIA+QAGMT+EKLQKLRS+QKITLSLQKP++ ND+              PD 
Sbjct: 434  GNHDPSQKQIAEQAGMTLEKLQKLRSVQKITLSLQKPIYPNDTTTYEEITPDTTIDSPDT 493

Query: 528  SASKQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESR 349
            S SKQ+MRNHI+NLLSVLNPKERKVIRLRYGIG EVRKSLADIGI+LGVSKERIRQ+ESR
Sbjct: 494  SVSKQVMRNHISNLLSVLNPKERKVIRLRYGIGGEVRKSLADIGIILGVSKERIRQLESR 553

Query: 348  ALFKLKQYSESHGLDAYKELLI 283
            +LFKLKQYSES GLDAYK+LLI
Sbjct: 554  SLFKLKQYSESQGLDAYKDLLI 575


>gb|KVH90482.1| RNA polymerase sigma-70 [Cynara cardunculus var. scolymus]
          Length = 549

 Score =  762 bits (1968), Expect = 0.0
 Identities = 414/560 (73%), Positives = 452/560 (80%), Gaps = 24/560 (4%)
 Frame = -1

Query: 1890 LSLPPRTHLKQL-PHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQ 1714
            LSLPPRT LKQ  P PPSALKLYEPAAP HSSMLAT+LAQHFPTSVLIQEQRRESKPLLQ
Sbjct: 13   LSLPPRTQLKQFSPPPPSALKLYEPAAPAHSSMLATSLAQHFPTSVLIQEQRRESKPLLQ 72

Query: 1713 TLKEEKSSPETVDND------EVDAISSDQYLKEFQSQLLQWPGLW--LPS-HTREKSLS 1561
            T+K++K+S  TVD +      EVDAISSDQYLKEFQ QLLQWP LW  LPS HTREK+ S
Sbjct: 73   TIKDDKTSQATVDGEQKGADHEVDAISSDQYLKEFQCQLLQWPALWYLLPSTHTREKTPS 132

Query: 1560 SSTMQP--------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSLVS 1405
            S TMQP        MD E++ V+ LAKKALSAS EAASL DD E  GV            
Sbjct: 133  SLTMQPAPNGTTKLMDVEMEHVLDLAKKALSASKEAASLADDGEPFGV------------ 180

Query: 1404 TNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANLHD 1225
                       KFVKSTRLLERQSKRRKG+KSNVIVRE++ STKPEPEKKT+Y+D+NLHD
Sbjct: 181  -----------KFVKSTRLLERQSKRRKGTKSNVIVRETSTSTKPEPEKKTTYRDSNLHD 229

Query: 1224 PLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLS 1045
            PLRMFLARPVTR          LIA+IK GM+LEEARSRF +QF+REPTLVEWAEA SLS
Sbjct: 230  PLRMFLARPVTRELLSSKEELELIAHIKAGMQLEEARSRFRDQFHREPTLVEWAEATSLS 289

Query: 1044 SHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKP 865
             HELKSQLH G SSREKLICANLRMVVYIAKQYRGRGLDLQDL+QEGSMGLMRSV KFKP
Sbjct: 290  CHELKSQLHRGTSSREKLICANLRMVVYIAKQYRGRGLDLQDLMQEGSMGLMRSVLKFKP 349

Query: 864  QAGCRFATYAYWWIRQSIRRAIFQNSKLIRLP------EGVYTMMYKVSEAKRSCIREGN 703
            QAGCRFATYAYWWIRQSIRRAIFQNSKLIRLP      EG+Y ++YKVSEAKR CIREGN
Sbjct: 350  QAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPVCHHFFEGIYNLLYKVSEAKRICIREGN 409

Query: 702  HEPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPDASA 523
            HEPTQKQIA QAGM VEK+QKLRS+QKITLSLQ+P+W +DS              PD SA
Sbjct: 410  HEPTQKQIAAQAGMPVEKVQKLRSVQKITLSLQQPIWPDDSTTYEEITADTTIDSPDTSA 469

Query: 522  SKQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRAL 343
            SKQ+MRNHI+NLL +L+PKERKVIRLRYGIG EVRKSLADIGI+LGVSKERIRQ+ESR+L
Sbjct: 470  SKQLMRNHISNLLGILSPKERKVIRLRYGIGGEVRKSLADIGIILGVSKERIRQLESRSL 529

Query: 342  FKLKQYSESHGLDAYKELLI 283
            FKLKQYSES GL AYK+LL+
Sbjct: 530  FKLKQYSESQGLTAYKDLLV 549


>ref|XP_009794385.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Nicotiana sylvestris]
 ref|XP_016467962.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X1 [Nicotiana tabacum]
          Length = 572

 Score =  493 bits (1268), Expect = e-165
 Identities = 280/564 (49%), Positives = 374/564 (66%), Gaps = 29/564 (5%)
 Frame = -1

Query: 1890 LSLPPRT--HLKQLPHPP------SALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRR 1735
            LS PP T  H  QL          S L LYE  AP  +S+    L +H P SV+  EQ+ 
Sbjct: 9    LSSPPTTFSHKTQLSRSSPSSISSSVLMLYEHVAPALTSVPHAYLVRHVPASVINPEQQF 68

Query: 1734 ESKPLLQTLKEEKSSPETVDN----------DEVDAISSDQYLKEFQSQLLQWPGL---W 1594
            E++  L ++KEEK+S  T+D           +E DA+ S+Q +   Q QLL+ PGL   +
Sbjct: 69   ENRLQLHSVKEEKTSLATIDRRLVEAASSAMEENDAVDSEQNINALQVQLLRSPGLSYLF 128

Query: 1593 LPSHTREK--------SLSSSTMQPMDAEVKQVIALAKKALSASIEAASLVDDTESIGVD 1438
               H +EK        SLS    + M+ E   V+ALA+KAL AS EAA L +D++ +G +
Sbjct: 129  SSYHLKEKVPLTLDTESLSDKGEKLMNFEPHNVVALARKALLASREAALLAEDSKLLGTN 188

Query: 1437 HDNSVASSLVSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEK 1258
             D+S+  +L+STN  + + K  +  +STRLLER+SK+R    S   V+E+N S +P+  +
Sbjct: 189  FDDSIFPNLLSTNLTDDKLKDQRIARSTRLLERRSKKRGAPTSKHQVQETNRSERPDVRR 248

Query: 1257 KTSYKDANLHDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPT 1078
            + + +  +L+DPLRMFL  P TR          LI  I+  MKL+E + R   QF+REPT
Sbjct: 249  RVN-ESIDLNDPLRMFLWGPETRQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPT 307

Query: 1077 LVEWAEAASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSM 898
            L+EWAEAA L+S EL+SQL  G SSR+KLI ANLRMVV+IAKQY+GRGL LQDLLQEGS+
Sbjct: 308  LIEWAEAAGLTSRELQSQLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSV 367

Query: 897  GLMRSVQKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSC 718
            GLM+SV+KFKPQAGCRF TYAYWWIRQ +R+AIFQ+S+ IRLPE VY ++ KV +AK+ C
Sbjct: 368  GLMKSVEKFKPQAGCRFPTYAYWWIRQGVRKAIFQHSRTIRLPENVYALLSKVKDAKKLC 427

Query: 717  IREGNHEPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXX 538
            I++GNH PT++ IA  AGM+VE+LQ L S  +  LS+Q+ VW +                
Sbjct: 428  IQQGNHHPTREDIASCAGMSVERLQSLLSAARTPLSMQQSVWTDQDATFQEITADNAIEA 487

Query: 537  PDASASKQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQV 358
            P+ S SKQ+MR H+ NLL+VL+PKERK+IRLR+GIG   RKSL++IG + G+SKER+RQ+
Sbjct: 488  PELSVSKQLMRRHVRNLLNVLSPKERKIIRLRFGIGDGERKSLSEIGAVFGLSKERVRQL 547

Query: 357  ESRALFKLKQYSESHGLDAYKELL 286
            ESRAL++LKQ   SHGLDAY +LL
Sbjct: 548  ESRALYRLKQNLSSHGLDAYNDLL 571


>ref|XP_023900784.1| RNA polymerase sigma factor sigF, chloroplastic [Quercus suber]
 gb|POE50311.1| rna polymerase sigma factor sigf, chloroplastic [Quercus suber]
          Length = 570

 Score =  492 bits (1266), Expect = e-164
 Identities = 280/559 (50%), Positives = 375/559 (67%), Gaps = 24/559 (4%)
 Frame = -1

Query: 1887 SLPPRTHLKQL---PHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLL 1717
            S P R HLK     P   S L L+E AAP  +SM +T +A+  PTSVL+QEQ  E+  LL
Sbjct: 13   SFPLRNHLKNCLASPSSASVLMLHEQAAPAVTSMPSTLIARRSPTSVLLQEQHDENGLLL 72

Query: 1716 QTLKEEKSSPETVD----------NDEVDAISSDQYLKEFQSQLLQWPGLW--LPS-HTR 1576
               KE+ +    +D          ++E ++ +SDQ +++F+ QLL WPGLW   PS  T 
Sbjct: 73   DMFKEDTAPRAMLDKRQMGTGASVHEEKNSGNSDQLVQDFERQLLHWPGLWHLFPSLQTG 132

Query: 1575 EKSLSSSTMQP--------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVA 1420
            + + SS ++QP        MD E   V+A+AKKALSAS EAA L +D++ IG D D+S +
Sbjct: 133  KNAHSSLSLQPVTTDLEKPMDVEPCNVVAIAKKALSASKEAALLAEDSKLIGADFDDSPS 192

Query: 1419 SSLVSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKD 1240
            S   S +   L  ++ K V+STRLLER+SK+R+  KS V++ E+ ++   E ++K   + 
Sbjct: 193  SGSGSRSLVNLPLEEEKTVRSTRLLERRSKKRRVPKSEVMIHETYSTRNVEVKRKIR-EG 251

Query: 1239 ANLHDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLVEWAE 1060
             + +DPLR+FL  P T+          LIA ++  +KLEE +SR    F REPTLVEWAE
Sbjct: 252  FDPNDPLRLFLWGPETKQLLTVDEESKLIAQVQDLLKLEEVKSRLQSHFGREPTLVEWAE 311

Query: 1059 AASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSV 880
             A LS   L+S+LH  NSSR+KLI ANLRMVV+IAKQY GRGL  QDLLQEGSMGLM+SV
Sbjct: 312  GAGLSYRVLQSKLHSCNSSRQKLIYANLRMVVHIAKQYLGRGLSFQDLLQEGSMGLMKSV 371

Query: 879  QKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNH 700
             KFKPQAGCRF TYAYWWIRQ+IR+AIFQ+S+ IRLPE V+T++ K+ E+KR+ I+EGNH
Sbjct: 372  VKFKPQAGCRFGTYAYWWIRQTIRKAIFQHSRTIRLPENVHTLLGKIMESKRALIQEGNH 431

Query: 699  EPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPDASAS 520
             PT++ IA   GMT++KL+KL    ++ LS+Q+PVWA+                PD S +
Sbjct: 432  HPTKEDIARHVGMTLDKLEKLLYNTRMPLSMQQPVWADQKTTFQEVTADTGIEIPDVSVA 491

Query: 519  KQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALF 340
            KQ+MR H+ NLLS L+P+ERK+IRLR+GI    +KSLA+IG M G+SKER+RQ+ESRAL+
Sbjct: 492  KQLMRQHVRNLLSNLSPRERKIIRLRFGIDNSEQKSLAEIGNMFGLSKERVRQLESRALY 551

Query: 339  KLKQYSESHGLDAYKELLI 283
            +LKQ   S GL AY +LL+
Sbjct: 552  RLKQCLSSEGLGAYADLLV 570


>ref|XP_019250683.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Nicotiana
            attenuata]
 gb|OIT01336.1| rna polymerase sigma factor sigf, chloroplastic [Nicotiana attenuata]
          Length = 571

 Score =  487 bits (1253), Expect = e-162
 Identities = 277/563 (49%), Positives = 373/563 (66%), Gaps = 28/563 (4%)
 Frame = -1

Query: 1890 LSLPPR--THLKQLPHPP-----SALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRE 1732
            LS PP   +H  QL         S L LYE  AP  +S+    LA+H P SV+  EQ+ E
Sbjct: 9    LSSPPTNFSHKTQLSRSSPSISSSVLMLYELVAPAFTSVPHAYLARHVPASVINPEQQFE 68

Query: 1731 SKPLLQTLKEEKSSPETVDN----------DEVDAISSDQYLKEFQSQLLQWPGL---WL 1591
            ++  L ++KE+K+S  T+            +E DA+ S+Q +   Q QLL+ PGL   + 
Sbjct: 69   NRLQLHSVKEDKTSLATIGRRLVEAASSAMEENDAVDSEQNINALQVQLLRSPGLSYLFS 128

Query: 1590 PSHTREK--------SLSSSTMQPMDAEVKQVIALAKKALSASIEAASLVDDTESIGVDH 1435
              H +EK        SLS    + M+ E   V+ALA+KAL AS EAA L  D++ +G + 
Sbjct: 129  SYHIKEKGPLTLDTESLSDKGEKLMNFEPHNVVALARKALLASREAALLAKDSKLLGTNF 188

Query: 1434 DNSVASSLVSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKK 1255
            D+S+  +L+STN  + + K  +  +STRLLER+SK+R    S   V+E+N S +P+  ++
Sbjct: 189  DDSIFPNLLSTNLTDDKLKDQRIARSTRLLERRSKKRGAPTSKHQVQETNRSERPDVRRR 248

Query: 1254 TSYKDANLHDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTL 1075
             + +  +L+DPLRMFL  P TR          LI  I+  MKL+E + R   QF+REPT+
Sbjct: 249  VN-ESIDLNDPLRMFLWGPETRQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTM 307

Query: 1074 VEWAEAASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMG 895
            +EWAEAA L+S EL+SQL  G SSR+KLI ANLRMVV+IAKQY+GRGL LQDLLQEGS+G
Sbjct: 308  IEWAEAAGLTSRELQSQLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVG 367

Query: 894  LMRSVQKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCI 715
            LM+SV+KFKPQAGCRF TYAYWWIRQ +R+AIFQ+S+ IRLPE VY ++ KV +AK+ CI
Sbjct: 368  LMKSVEKFKPQAGCRFPTYAYWWIRQGVRKAIFQHSRTIRLPENVYALLSKVKDAKKLCI 427

Query: 714  REGNHEPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXP 535
            ++GNH PT++ IA  AGM+VE+LQ L S  +  LS+Q+ VW +                P
Sbjct: 428  QQGNHHPTREDIASCAGMSVERLQSLLSAARTPLSMQQLVWTDQDTTFQEITADNAIEAP 487

Query: 534  DASASKQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVE 355
            + S SKQ+MR H+ NLL+VL+PKERK+IRLR+GIG   RKSL++IG + G+SKER+RQ+E
Sbjct: 488  ELSVSKQLMRRHVRNLLNVLSPKERKIIRLRFGIGDGERKSLSEIGAVFGLSKERVRQLE 547

Query: 354  SRALFKLKQYSESHGLDAYKELL 286
            SRAL++LKQ   SHGLDAY +LL
Sbjct: 548  SRALYRLKQNLNSHGLDAYSDLL 570


>ref|XP_016487689.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            [Nicotiana tabacum]
          Length = 572

 Score =  485 bits (1248), Expect = e-162
 Identities = 280/564 (49%), Positives = 371/564 (65%), Gaps = 29/564 (5%)
 Frame = -1

Query: 1890 LSLPPRT--HLKQLPHPP------SALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRR 1735
            LS PP T  H  Q           S L LYE  AP  +S+    LA+H P SV+  EQ+ 
Sbjct: 9    LSSPPTTFSHKTQFSRSSPSSISSSVLMLYEHVAPGLTSVPHAYLARHVPASVINPEQQF 68

Query: 1734 ESKPLLQTLKEEKSSPETVDN----------DEVDAISSDQYLKEFQSQLLQWPGL---W 1594
            E++  L T+K+EK+S  T+D           +E DA+ S+Q +   Q QLL+ PGL   +
Sbjct: 69   ENRLQLHTVKKEKTSLATIDRRLVEAASSAMEENDAVDSEQNINVLQVQLLRSPGLSYLF 128

Query: 1593 LPSHTREK--------SLSSSTMQPMDAEVKQVIALAKKALSASIEAASLVDDTESIGVD 1438
               H +EK        SLS    + M+ E + V+ALA+KAL AS EAA L +D++ +  +
Sbjct: 129  SSYHLKEKRPLTLDTESLSDKGEKLMNFEPESVVALARKALLASREAALLAEDSKLLETN 188

Query: 1437 HDNSVASSLVSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEK 1258
             D+S+  +L+STN  + + K  K V+STR LER+SKRR        V+E+N S +P+  +
Sbjct: 189  FDDSIFPNLLSTNLTDDKLKDQKTVRSTRFLERRSKRRGVPTPKHQVQETNRSERPDVRR 248

Query: 1257 KTSYKDANLHDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPT 1078
            +   +  +L+DPLRMFL  P T+          LI  I+  MKL+E + R   QF+REPT
Sbjct: 249  RVK-ESIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPT 307

Query: 1077 LVEWAEAASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSM 898
            L+EWAEAA L+S EL+SQL  G SSR+KLI ANLRMVV+IAKQY+GRGL LQDLLQEGS+
Sbjct: 308  LIEWAEAAGLTSRELQSQLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSV 367

Query: 897  GLMRSVQKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSC 718
            GLM+SV+KFKPQAGCRF TYAYWWIRQ +R+AIFQ+S+ IRLPE VY ++ KV +AK+ C
Sbjct: 368  GLMKSVEKFKPQAGCRFPTYAYWWIRQGVRKAIFQHSRTIRLPENVYALLSKVKDAKKLC 427

Query: 717  IREGNHEPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXX 538
            I++GN  PT++ IA  AGM+VE+LQ L S  +  LS+Q+ VW +                
Sbjct: 428  IQQGNRHPTREDIASCAGMSVERLQSLLSAARTPLSMQQSVWTDQDTTFQEITADSAIEA 487

Query: 537  PDASASKQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQV 358
            P+ S SKQ+MR HI NLL+VLNPKERK+IRLR+GIG   RKSL++IG + G+SKER+RQ+
Sbjct: 488  PELSVSKQLMRRHIRNLLNVLNPKERKIIRLRFGIGDGKRKSLSEIGAVFGLSKERVRQL 547

Query: 357  ESRALFKLKQYSESHGLDAYKELL 286
            ESRAL+KLK+   SHGLDAY +LL
Sbjct: 548  ESRALYKLKKNLSSHGLDAYSDLL 571


>dbj|GAV75806.1| Sigma70_r3 domain-containing protein/Sigma70_r2 domain-containing
            protein/Sigma70_r4 domain-containing protein [Cephalotus
            follicularis]
          Length = 564

 Score =  484 bits (1247), Expect = e-162
 Identities = 277/558 (49%), Positives = 368/558 (65%), Gaps = 23/558 (4%)
 Frame = -1

Query: 1887 SLPPRTHLKQLPHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTL 1708
            S P +THLK   +  S+      A+P  +S+  T  A+H PTSVL+QEQR E +PL    
Sbjct: 14   SFPSKTHLKNGLYSSSS------ASPAITSVSTTLTARHLPTSVLLQEQRDELRPLSHLF 67

Query: 1707 KEEKSSPETVD----------NDEVDAISSDQYLKEFQSQLLQWPGLW---LPSHTREKS 1567
            KEEK+   T+D          N+E  + + DQ +++F+ QLL WPGLW    PS T E  
Sbjct: 68   KEEKTPQTTLDGRQMESGALINEEKISGNLDQLVQDFEHQLLHWPGLWNFLSPSQTSEDP 127

Query: 1566 LSSSTMQP--------MDAEVKQVIALAKKALSASIEAASLVDDTES--IGVDHDNSVAS 1417
             S  T Q         MD E    I+LA++ALSAS  AASL  DT+S  I  D D  +++
Sbjct: 128  SSLLTTQSVVTDSQPLMDVEPSDAISLAERALSASKLAASLAQDTKSGTIEADIDYPLST 187

Query: 1416 SLVSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDA 1237
            S  S +      ++VK V+STR+LER SKRR   K NVIV E + S + + ++K   +  
Sbjct: 188  SSGSNSSSNFPIEEVKIVRSTRVLERWSKRRNIPKPNVIVHEMSISRRADVKRKLK-EGF 246

Query: 1236 NLHDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLVEWAEA 1057
            + +DPLR+FL  P T           LI  I+  +KLEE +SR   QF REPTL+EWAEA
Sbjct: 247  DPNDPLRLFLWGPETTQLLSFKEESELIVQIQNLLKLEEVKSRLQSQFGREPTLIEWAEA 306

Query: 1056 ASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQ 877
              +S   L+SQLH GN SREKLI ANLRMVV+IAKQY+GRGL LQDL+QEGSMGLM+SV+
Sbjct: 307  VGMSHQVLRSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLMQEGSMGLMKSVK 366

Query: 876  KFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHE 697
            KFKPQAGCRFA+YAYWWIRQ +R+AIFQ+SK IRLPE  Y+++ KV EAK+S I+EGNH 
Sbjct: 367  KFKPQAGCRFASYAYWWIRQMVRKAIFQHSKTIRLPERFYSLLGKVMEAKKSYIQEGNHH 426

Query: 696  PTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPDASASK 517
            P+ +++A + G+TV+KLQKL    +  LS+Q+PVWA+                PD S SK
Sbjct: 427  PSIEELAGRVGITVDKLQKLILSTRNPLSMQQPVWADQKTTLQEITADPEIEVPDLSVSK 486

Query: 516  QIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFK 337
            Q+MR H+ NLLSVL+ KE+++IRLR+GIG   ++SL++IG + G+SKER+RQ+E+RA++K
Sbjct: 487  QLMRQHVRNLLSVLSQKEKQIIRLRFGIGDGEQRSLSEIGNIFGLSKERVRQLENRAIYK 546

Query: 336  LKQYSESHGLDAYKELLI 283
            LKQ  ++ GLDAY  L+I
Sbjct: 547  LKQCLDNQGLDAYANLII 564


>ref|XP_009621232.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Nicotiana
            tomentosiformis]
          Length = 544

 Score =  484 bits (1245), Expect = e-162
 Identities = 272/540 (50%), Positives = 363/540 (67%), Gaps = 21/540 (3%)
 Frame = -1

Query: 1842 SALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTLKEEKSSPETVDN--- 1672
            + L LYE  AP  +S+    LA+H P SV+  EQ+ E++  L T+KEEK+S  T+D    
Sbjct: 5    AVLMLYEHVAPGLTSVPHAYLARHVPASVINPEQQFENRLQLHTVKEEKTSLATIDRRLV 64

Query: 1671 -------DEVDAISSDQYLKEFQSQLLQWPGL---WLPSHTREK--------SLSSSTMQ 1546
                   +E DA+ S+Q +   Q QLL+ PGL   +   H +EK        SLS    +
Sbjct: 65   EAASSAMEENDAVDSEQNINALQVQLLRSPGLSYLFSSYHLKEKGPLTLDTESLSDKGEK 124

Query: 1545 PMDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSLVSTNPGELETKKVKF 1366
             M+ E + V+ALA+KAL AS EAA L +D++ +  + D+S+  +L+STN  + + K  K 
Sbjct: 125  LMNFEPESVVALARKALLASREAALLAEDSKLLETNFDDSIFPNLLSTNLTDDKLKDQKT 184

Query: 1365 VKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANLHDPLRMFLARPVTRX 1186
            V+STR LER+SKRR        V+E+N S +P+  ++   +  +L+DPLRMFL  P T+ 
Sbjct: 185  VRSTRFLERRSKRRGVPTPKHQVQETNRSERPDVRRRVK-ESIDLNDPLRMFLWGPETKQ 243

Query: 1185 XXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLSSHELKSQLHLGNS 1006
                     LI  I+  MKL+E + R   QF+REPTL+EWAEAA L+S EL+SQL  G S
Sbjct: 244  LLTVKEESELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGLTSRELQSQLRSGKS 303

Query: 1005 SREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAGCRFATYAYWW 826
            SR+KLI ANLRMVV+IAKQY+GRGL LQDLLQEGS+GLM+SV+KFKPQAGCRF TYAYWW
Sbjct: 304  SRDKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRFPTYAYWW 363

Query: 825  IRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPTQKQIADQAGMTVEKL 646
            IRQ +R+ IFQ+S+ IRLPE VY ++ KV +AK+ CI++GN  PT++ IA  AGM+VE+L
Sbjct: 364  IRQGVRKTIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNRHPTREDIASCAGMSVERL 423

Query: 645  QKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPDASASKQIMRNHITNLLSVLNPK 466
            Q L S  +  LS+Q+ VW +                P+ S SKQ+MR HI NLL+VLNPK
Sbjct: 424  QSLLSAARTPLSMQQSVWTDQDTTFQEITADSAIEAPELSVSKQLMRRHIRNLLNVLNPK 483

Query: 465  ERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLKQYSESHGLDAYKELL 286
            ERK+IRLR+GIG   RKSL++IG + G+SKER+RQ+ESRAL+KLK+   SHGLDAY +LL
Sbjct: 484  ERKIIRLRFGIGDGKRKSLSEIGAVFGLSKERVRQLESRALYKLKKNLSSHGLDAYSDLL 543


>ref|XP_020422238.1| RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Prunus
            persica]
 gb|ONI03024.1| hypothetical protein PRUPE_6G234100 [Prunus persica]
          Length = 573

 Score =  484 bits (1247), Expect = e-161
 Identities = 281/563 (49%), Positives = 377/563 (66%), Gaps = 28/563 (4%)
 Frame = -1

Query: 1887 SLPPRTHLKQLPHPPSA-----LKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKP 1723
            + P  THL+  P P S+     L L+E A P  +S+  T++A+HFPTSVL+QEQR E KP
Sbjct: 13   AFPSTTHLRH-PLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKP 71

Query: 1722 LLQTLKEEKSSPETVDNDEVD---AISSDQYLKEF-------QSQLLQWPGLWLPSHTRE 1573
            LL  LKE+K+S   +D  +++   ++  D  + +F       + QLL    L + S  + 
Sbjct: 72   LLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNHDILDVFSSLQT 131

Query: 1572 ----------KSLSSSTMQPMDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSV 1423
                      +SL++++ + MD E   V+ALAKKALSAS EAASL +D++S+G D D S+
Sbjct: 132  GAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDESL 191

Query: 1422 ASSLVSTNPGELETKKVKFVKSTRLLERQSKR---RKGSKSNVIVRESNASTKPEPEKKT 1252
            +  L  T+      ++ K V+STR+LER+ KR   RK  KS VI  ESN+ T  +  KK 
Sbjct: 192  SLGLGYTSLANWIVEEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTGSDVRKKI 251

Query: 1251 SYKDANLHDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLV 1072
            S +  N +DPLR+FL  P TR          LIA ++   KLEE +SR   QF REPTL+
Sbjct: 252  S-EGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLI 310

Query: 1071 EWAEAASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGL 892
            EWAEA  +S   LKSQL  G SSREKLI ANLRMVV+IAKQY+GRGL LQDL+QEGSMGL
Sbjct: 311  EWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGL 370

Query: 891  MRSVQKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIR 712
            M+SV+KFKPQAGCRFATYAYWWIRQ++R+AIFQ+S+ IRLPE VY+++ KV EAK+SCI+
Sbjct: 371  MKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQ 430

Query: 711  EGNHEPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPD 532
            EGNH P ++++A + G+TVEKL+KL    ++ LS+Q+PVWA+                PD
Sbjct: 431  EGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPD 490

Query: 531  ASASKQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVES 352
             S +KQ+MR H+ +LLS+LN +ER++IRLRYGI    ++SL++IG M G+SKER+RQ+ES
Sbjct: 491  VSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLES 550

Query: 351  RALFKLKQYSESHGLDAYKELLI 283
            RA  KL+Q   S GL AY  LL+
Sbjct: 551  RAFLKLRQSLGSQGLGAYGPLLV 573


>ref|XP_008243975.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Prunus
            mume]
          Length = 573

 Score =  484 bits (1246), Expect = e-161
 Identities = 281/563 (49%), Positives = 378/563 (67%), Gaps = 28/563 (4%)
 Frame = -1

Query: 1887 SLPPRTHLKQLPHPPSA-----LKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKP 1723
            + P  THL+  P P S+     L L+E A P  +S+  T++A+HFPTSVL+QEQR E KP
Sbjct: 13   AFPSTTHLRH-PLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKP 71

Query: 1722 LLQTLKEEKSSPETVDNDEVD---AISSDQYLKEF-------QSQLLQWPGLWLPSHTRE 1573
            LL  LKE+K+S  T+D  +++   ++  D  + +F       + QLL    L + S  + 
Sbjct: 72   LLHVLKEDKTSEATLDRMQIETGASVHEDLDIDDFYPLVNGSKPQLLNPDILDVFSSLQT 131

Query: 1572 ----------KSLSSSTMQPMDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSV 1423
                      +SL++++ + MD E   V+ALAKKALSAS EAASL +D++S+G D D S+
Sbjct: 132  GAKPSTPVTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDESL 191

Query: 1422 ASSLVSTNPGELETKKVKFVKSTRLLERQSKR---RKGSKSNVIVRESNASTKPEPEKKT 1252
            +  L  T+      ++ K V+STR+LER+ KR   RK  KS +I  ESN+ T  +  KK 
Sbjct: 192  SLGLGYTSLDNWIVEEEKTVRSTRILERRRKRIKTRKVPKSKLIGHESNSFTSSDVPKKI 251

Query: 1251 SYKDANLHDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLV 1072
            S +  N +DPLR+FL  P TR          LIA ++   KLEE +SR   QF REPTL+
Sbjct: 252  S-EGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLI 310

Query: 1071 EWAEAASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGL 892
            EWAEA  +S   LKSQL  G SSREKLI ANLRMVV+IAKQY+GRGL LQDL+QEGSMGL
Sbjct: 311  EWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGL 370

Query: 891  MRSVQKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIR 712
            M+SV+KFKPQAGCRFATYAYWWIRQ++R+AIFQ+S+ IRLPE VY+++ KV EAK+SCI+
Sbjct: 371  MKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQ 430

Query: 711  EGNHEPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPD 532
            EGNH P ++++A + G+TVEKL+KL    ++ LS+Q+PVWA+                PD
Sbjct: 431  EGNHNPNKEELAIRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPD 490

Query: 531  ASASKQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVES 352
             S +KQ+MR H+ +LLS+LN +ER++IRLRYGI    ++SL++IG M G+SKER+RQ+ES
Sbjct: 491  VSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLES 550

Query: 351  RALFKLKQYSESHGLDAYKELLI 283
            RA  KL+Q   S GL AY  LL+
Sbjct: 551  RAFLKLRQSLGSQGLGAYGPLLV 573


>ref|XP_011094631.1| RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Sesamum
            indicum]
          Length = 561

 Score =  483 bits (1244), Expect = e-161
 Identities = 277/556 (49%), Positives = 369/556 (66%), Gaps = 23/556 (4%)
 Frame = -1

Query: 1881 PPRTHLKQLPHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLL----- 1717
            PPRTHL+      S L L++   P  +S L+TTLA+H PTSVL Q+Q  ES+ +L     
Sbjct: 15   PPRTHLRNCSSS-SVLLLHDQVTPALTS-LSTTLARHSPTSVLTQDQHNESRSMLCSKED 72

Query: 1716 ------QTL--KEEKSSPETVDNDEVDAISSDQYLKEFQSQLLQWPGLWL--PSHTREKS 1567
                  QTL  ++   +P +  ND    +  DQY+ EFQ QLL+ P LW   PS   ++ 
Sbjct: 73   SVFQLKQTLGMRQAVMAPASSSNDGNGNVDPDQYVNEFQLQLLRRPELWYLWPSLQTKEQ 132

Query: 1566 LSSSTMQPM--------DAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSL 1411
            L S TM+ +        D E  +V+ALA++A SA  EAA++V D E  G   D+S +   
Sbjct: 133  LFSMTMESISNKNEKFIDVEADRVVALAREAFSACKEAAAIVKDAELFGARLDDSSSIRS 192

Query: 1410 VSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANL 1231
            ++  P +      + V+STRL+ERQ KRR+  K  + V+E+N   KPE ++K+  +  + 
Sbjct: 193  LTGVPAQ------RTVRSTRLVERQMKRRRVPKPKIEVQETNHRRKPESQRKSD-EGFDP 245

Query: 1230 HDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAAS 1051
            +DPLR+FL  P TR          LI  I+  M+L+E +SR   QF+REPTLVEWA AA 
Sbjct: 246  NDPLRLFLRGPETRQLLTSKEESELIVKIQELMRLQEMKSRLKVQFSREPTLVEWAAAAG 305

Query: 1050 LSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKF 871
            +S   L+SQ+H G+SSR+KLICAN RMVV+IAKQY+GRGL LQDLLQEGSMGLMRSV+KF
Sbjct: 306  ISCQALQSQIHCGDSSRQKLICANFRMVVHIAKQYQGRGLSLQDLLQEGSMGLMRSVEKF 365

Query: 870  KPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPT 691
            KPQAGCRFATYAYWWIRQSIR+A+FQ+S+ IRLPE VY+++ +V EAK+ CI++GNH PT
Sbjct: 366  KPQAGCRFATYAYWWIRQSIRKALFQHSRTIRLPENVYSLLSRVYEAKKLCIQQGNHLPT 425

Query: 690  QKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPDASASKQI 511
            ++ IA  AGM+VE L++L    ++ LSLQKPVW +                PD   +KQ+
Sbjct: 426  KEDIAACAGMSVEGLERLLYTARMPLSLQKPVWTDQDTTFQEITADTTIEVPDVGVAKQL 485

Query: 510  MRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLK 331
            MR HI NLLSVL+P+ERK+IRLR+GI    +KSL++IG   G+SKER+RQ+ESRAL+KLK
Sbjct: 486  MRQHIRNLLSVLSPRERKIIRLRFGIEHGEQKSLSEIGAGFGLSKERVRQLESRALYKLK 545

Query: 330  QYSESHGLDAYKELLI 283
            Q   SHGL AY  ++I
Sbjct: 546  QCLGSHGLAAYANMII 561


>ref|XP_021827462.1| RNA polymerase sigma factor sigF, chloroplastic isoform X1 [Prunus
            avium]
          Length = 573

 Score =  483 bits (1244), Expect = e-161
 Identities = 280/563 (49%), Positives = 378/563 (67%), Gaps = 28/563 (4%)
 Frame = -1

Query: 1887 SLPPRTHLKQLPHPPSA-----LKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKP 1723
            + P  THL+  P P S+     L L+E A P  +S+  T++A+HFPTSVL+QEQR E KP
Sbjct: 13   AFPSTTHLRH-PLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKP 71

Query: 1722 LLQTLKEEKSSPETVDNDEVD---AISSDQYLKEF-------QSQLLQWPGLWLPSHTRE 1573
            LL  LKE+K+S  T+D  +++   ++  D  + +F       + QLL    L + S  + 
Sbjct: 72   LLHVLKEDKTSEATLDRMQIETGASVHEDLDIDDFYPLVNGSKPQLLNPDILDVFSSLQT 131

Query: 1572 ----------KSLSSSTMQPMDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSV 1423
                      +SL++++ + MD E   V+ALAKKALSAS EAASL +D++S+G D D S+
Sbjct: 132  GAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDESL 191

Query: 1422 ASSLVSTNPGELETKKVKFVKSTRLLERQSKR---RKGSKSNVIVRESNASTKPEPEKKT 1252
            +  L  T+      ++   V+STR+LER+ KR   RK  KS VI  ESN+ T  +  KK 
Sbjct: 192  SLGLGYTSLANWIVEEETTVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTSSDVRKKI 251

Query: 1251 SYKDANLHDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLV 1072
            S +  N +DPLR+FL  P TR          LIA ++   KLEE ++R   QF REPTL+
Sbjct: 252  S-EGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKTRLQTQFGREPTLI 310

Query: 1071 EWAEAASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGL 892
            EWAEA  +S   LKSQL  G SSREKLI ANLRMVV+IAKQY+GRGL LQDL+QEGSMGL
Sbjct: 311  EWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGL 370

Query: 891  MRSVQKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIR 712
            M+SV+KFKPQAGCRFATYAYWWIRQ++R+AIFQ+S+ IRLPE VY+++ KV EAK+SCI+
Sbjct: 371  MKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQ 430

Query: 711  EGNHEPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPD 532
            EGNH P+++++A + G+TVEKL+KL    ++ LS+Q+PVWA+                PD
Sbjct: 431  EGNHNPSKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPD 490

Query: 531  ASASKQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVES 352
             S +KQ+MR H+ +LLS+LN +ER++IRLRYGI    ++SL++IG M G+SKER+RQ+ES
Sbjct: 491  VSVAKQLMRQHVRHLLSILNLRERQIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLES 550

Query: 351  RALFKLKQYSESHGLDAYKELLI 283
            RA  KL+Q   S GL AY  LL+
Sbjct: 551  RAFLKLRQSLGSQGLGAYGPLLV 573


>emb|CBI32760.3| unnamed protein product, partial [Vitis vinifera]
          Length = 561

 Score =  482 bits (1240), Expect = e-161
 Identities = 274/556 (49%), Positives = 378/556 (67%), Gaps = 21/556 (3%)
 Frame = -1

Query: 1887 SLPPRTHLKQLPHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTL 1708
            S PPRTH +      S L L++  AP  +S + TT+A+ FPTSVL+QEQR E +P  Q L
Sbjct: 13   SFPPRTHFRN--SSSSVLMLHDQVAPAVAS-IPTTIARKFPTSVLLQEQRDEYRPFPQAL 69

Query: 1707 KEEKSSPETVDNDEVDAISS---------DQYLKEFQSQLLQWPGLW--LPS-HTREKS- 1567
            K+E++   T++  +++ + S         +QY+  F+ QLL  PGLW  LPS  T EKS 
Sbjct: 70   KDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSP 129

Query: 1566 LSSSTMQP--------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSL 1411
             SSS M+         MD +   V+ALAKKALSAS +A SL ++ + +G D ++S + SL
Sbjct: 130  FSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSL 189

Query: 1410 VSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANL 1231
             + +   L  ++ K V+STRLLER+SK+R+  K  V V E++ S + E ++K + +  + 
Sbjct: 190  GAISSPNLPLEE-KTVRSTRLLERRSKKRRNPK--VAVHENHGSRRAEVQRKIN-EGYDP 245

Query: 1230 HDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAAS 1051
             DPLR+FL  P TR          LI  I+  M+LEE + R      REPT+VEWAEA  
Sbjct: 246  KDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVG 305

Query: 1050 LSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKF 871
            LS   L+SQLH GN SR+KLI ANLRMVV+IAKQY+GRGL+LQDLLQEGSMGLM SV+KF
Sbjct: 306  LSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKF 365

Query: 870  KPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPT 691
            KP AGCRFA+YAYWWIRQ++R+AIFQ+S+ IRLPE +Y+++ KV EAKR  I+EG+H+PT
Sbjct: 366  KPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPT 425

Query: 690  QKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPDASASKQI 511
            +++IA++ G+T+EKLQ+L    ++ LS+Q+PVWA+                PD S +KQ+
Sbjct: 426  KEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQL 485

Query: 510  MRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLK 331
            MR H+ NLL VL PKER++IRLR+GIG  + ++L++IG++ G SKER+RQ+E RAL KLK
Sbjct: 486  MRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLK 545

Query: 330  QYSESHGLDAYKELLI 283
            Q   SHGL++Y +LL+
Sbjct: 546  QCLSSHGLESYTDLLV 561


>ref|XP_010653602.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X1
            [Vitis vinifera]
          Length = 567

 Score =  482 bits (1240), Expect = e-161
 Identities = 274/556 (49%), Positives = 378/556 (67%), Gaps = 21/556 (3%)
 Frame = -1

Query: 1887 SLPPRTHLKQLPHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTL 1708
            S PPRTH +      S L L++  AP  +S + TT+A+ FPTSVL+QEQR E +P  Q L
Sbjct: 19   SFPPRTHFRN--SSSSVLMLHDQVAPAVAS-IPTTIARKFPTSVLLQEQRDEYRPFPQAL 75

Query: 1707 KEEKSSPETVDNDEVDAISS---------DQYLKEFQSQLLQWPGLW--LPS-HTREKS- 1567
            K+E++   T++  +++ + S         +QY+  F+ QLL  PGLW  LPS  T EKS 
Sbjct: 76   KDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSP 135

Query: 1566 LSSSTMQP--------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSL 1411
             SSS M+         MD +   V+ALAKKALSAS +A SL ++ + +G D ++S + SL
Sbjct: 136  FSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSPSL 195

Query: 1410 VSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANL 1231
             + +   L  ++ K V+STRLLER+SK+R+  K  V V E++ S + E ++K + +  + 
Sbjct: 196  GAISSPNLPLEE-KTVRSTRLLERRSKKRRNPK--VAVHENHGSRRAEVQRKIN-EGYDP 251

Query: 1230 HDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAAS 1051
             DPLR+FL  P TR          LI  I+  M+LEE + R      REPT+VEWAEA  
Sbjct: 252  KDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAVG 311

Query: 1050 LSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKF 871
            LS   L+SQLH GN SR+KLI ANLRMVV+IAKQY+GRGL+LQDLLQEGSMGLM SV+KF
Sbjct: 312  LSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEKF 371

Query: 870  KPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPT 691
            KP AGCRFA+YAYWWIRQ++R+AIFQ+S+ IRLPE +Y+++ KV EAKR  I+EG+H+PT
Sbjct: 372  KPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDPT 431

Query: 690  QKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPDASASKQI 511
            +++IA++ G+T+EKLQ+L    ++ LS+Q+PVWA+                PD S +KQ+
Sbjct: 432  KEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQL 491

Query: 510  MRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLK 331
            MR H+ NLL VL PKER++IRLR+GIG  + ++L++IG++ G SKER+RQ+E RAL KLK
Sbjct: 492  MRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKLK 551

Query: 330  QYSESHGLDAYKELLI 283
            Q   SHGL++Y +LL+
Sbjct: 552  QCLSSHGLESYTDLLV 567


>gb|POO01707.1| RNA polymerase sigma factor [Trema orientalis]
          Length = 566

 Score =  480 bits (1235), Expect = e-160
 Identities = 274/558 (49%), Positives = 371/558 (66%), Gaps = 25/558 (4%)
 Frame = -1

Query: 1881 PPRTHLKQLPHPPSALKLYEPAAPTH----SSMLATTLAQHFPTSVLIQEQRRESKPLLQ 1714
            PPRTHL+      S+      +A T     +S+ AT++AQ F TSVL+QEQR E +PLL+
Sbjct: 15   PPRTHLRNYLSSSSSSSSCSASASTSGATVTSLPATSVAQRFSTSVLLQEQRDELRPLLR 74

Query: 1713 TLKEEKSSPETVDNDEVDA----------ISSDQYLKEFQSQLLQWPGLW--LPS-HTRE 1573
             +KEEK+S   +D  + D+            + + + EF+   + WPG W   PS  T+ 
Sbjct: 75   VIKEEKTSQGVLDRKQTDSGTLVHEDKTNADTSRLMWEFEHPSIHWPGFWHGFPSLQTKV 134

Query: 1572 KSLSSSTMQP--------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVAS 1417
             S +S TM+P        +D  +   IALAKKAL AS EAASLV++++S+  D D+ V+ 
Sbjct: 135  NSSASLTMEPTTAGSKKNVDVGLSDAIALAKKALQASKEAASLVEESKSVEADSDDMVSL 194

Query: 1416 SLVSTNPGELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDA 1237
            SL +  PG++E    K V+STRLLER+SK+RK  KSNV+  E N+S++    +K+  +  
Sbjct: 195  SLANF-PGKVE----KTVRSTRLLERRSKKRKVPKSNVLFYE-NSSSRSADIRKSLGERF 248

Query: 1236 NLHDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLVEWAEA 1057
            +  DPLR+FLA P TR          LI  ++  MKLE+ + R   +F REPTLVEWAEA
Sbjct: 249  DSDDPLRLFLAGPETRQLLNFEEESELIGRVQDVMKLEQVKDRLQSEFGREPTLVEWAEA 308

Query: 1056 ASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQ 877
              LS   L+SQ+  G SSREKLI +NLRMVVYIAKQY+GRG+ LQDL+Q GSMGLM+SV+
Sbjct: 309  VGLSCRILQSQIRSGTSSREKLIYSNLRMVVYIAKQYQGRGIGLQDLMQVGSMGLMKSVE 368

Query: 876  KFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHE 697
            KFKPQAGCRFA+YAYWWIRQ+IR+AIFQ+S+ IRLPE +YT++ KV EAKR CI+EGNH 
Sbjct: 369  KFKPQAGCRFASYAYWWIRQTIRKAIFQHSRTIRLPENMYTLLGKVLEAKRLCIQEGNHN 428

Query: 696  PTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPDASASK 517
            P+++ +A   G+TVE+L+KL  I +  LS+Q+PVWA+                PD S +K
Sbjct: 429  PSKEDLARCVGITVERLEKLLCITRRPLSMQQPVWADQETTFQEVTADTGIEIPDLSVTK 488

Query: 516  QIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFK 337
            Q+MR H+  LL  LN +ER++IRLR+GI    +KSL++IG + G+SKER+RQ+ESRAL+K
Sbjct: 489  QLMRQHVRGLLRNLNVRERQIIRLRFGIEDGTQKSLSEIGNLFGLSKERVRQLESRALYK 548

Query: 336  LKQYSESHGLDAYKELLI 283
            LKQ   S  L AY +LL+
Sbjct: 549  LKQCLVSQDLGAYADLLV 566


>ref|XP_020422239.1| RNA polymerase sigma factor sigF, chloroplastic isoform X2 [Prunus
            persica]
 gb|ONI03022.1| hypothetical protein PRUPE_6G234100 [Prunus persica]
          Length = 568

 Score =  480 bits (1235), Expect = e-160
 Identities = 281/563 (49%), Positives = 376/563 (66%), Gaps = 28/563 (4%)
 Frame = -1

Query: 1887 SLPPRTHLKQLPHPPSA-----LKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKP 1723
            + P  THL+  P P S+     L L+E A P  +S+  T++A+HFPTSVL+QEQR E KP
Sbjct: 13   AFPSTTHLRH-PLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKP 71

Query: 1722 LLQTLKEEKSSPETVDNDEVD---AISSDQYLKEF-------QSQLLQWPGLWLPSHTRE 1573
            LL  LKE+K+S   +D  +++   ++  D  + +F       + QLL    L + S  + 
Sbjct: 72   LLHVLKEDKTSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNHDILDVFSSLQT 131

Query: 1572 ----------KSLSSSTMQPMDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSV 1423
                      +SL++++ + MD E   V+ALAKKALSAS EAASL +D++S+G D D S+
Sbjct: 132  GAKPSTPLTLESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDESL 191

Query: 1422 ASSLVSTNPGELETKKVKFVKSTRLLERQSKR---RKGSKSNVIVRESNASTKPEPEKKT 1252
            +  L +    E +T     V+STR+LER+ KR   RK  KS VI  ESN+ T  +  KK 
Sbjct: 192  SLGLANWIVEEEKT-----VRSTRILERRRKRIKTRKVPKSKVIGHESNSFTGSDVRKKI 246

Query: 1251 SYKDANLHDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLV 1072
            S +  N +DPLR+FL  P TR          LIA ++   KLEE +SR   QF REPTL+
Sbjct: 247  S-EGFNPNDPLRLFLWGPETRQLLTAKEEAELIARVQDLFKLEEVKSRLQTQFGREPTLI 305

Query: 1071 EWAEAASLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGL 892
            EWAEA  +S   LKSQL  G SSREKLI ANLRMVV+IAKQY+GRGL LQDL+QEGSMGL
Sbjct: 306  EWAEAVGISCQILKSQLRSGTSSREKLIYANLRMVVHIAKQYQGRGLGLQDLMQEGSMGL 365

Query: 891  MRSVQKFKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIR 712
            M+SV+KFKPQAGCRFATYAYWWIRQ++R+AIFQ+S+ IRLPE VY+++ KV EAK+SCI+
Sbjct: 366  MKSVEKFKPQAGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYSLLGKVLEAKKSCIQ 425

Query: 711  EGNHEPTQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPD 532
            EGNH P ++++A + G+TVEKL+KL    ++ LS+Q+PVWA+                PD
Sbjct: 426  EGNHNPNKEELARRVGITVEKLEKLLYATRMPLSMQQPVWADQDTTFQEVTADTGVEIPD 485

Query: 531  ASASKQIMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVES 352
             S +KQ+MR H+ +LLS+LN +ER++IRLRYGI    ++SL++IG M G+SKER+RQ+ES
Sbjct: 486  VSVAKQLMRQHVRHLLSILNLREREIIRLRYGIEDGKQRSLSEIGGMFGLSKERVRQLES 545

Query: 351  RALFKLKQYSESHGLDAYKELLI 283
            RA  KL+Q   S GL AY  LL+
Sbjct: 546  RAFLKLRQSLGSQGLGAYGPLLV 568


>ref|XP_019077288.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Vitis vinifera]
          Length = 566

 Score =  479 bits (1233), Expect = e-159
 Identities = 275/557 (49%), Positives = 377/557 (67%), Gaps = 22/557 (3%)
 Frame = -1

Query: 1887 SLPPRTHLKQLPHPPSALKLYEPAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTL 1708
            S PPRTH +      S L L++  AP  +S + TT+A+ FPTSVL+QEQR E +P  Q L
Sbjct: 19   SFPPRTHFRN--SSSSVLMLHDQVAPAVAS-IPTTIARKFPTSVLLQEQRDEYRPFPQAL 75

Query: 1707 KEEKSSPETVDNDEVDAISS---------DQYLKEFQSQLLQWPGLW--LPS-HTREKS- 1567
            K+E++   T++  +++ + S         +QY+  F+ QLL  PGLW  LPS  T EKS 
Sbjct: 76   KDERTFQATLEKRQMEIVVSADEENSDDHNQYMVNFERQLLLQPGLWYSLPSSQTGEKSP 135

Query: 1566 LSSSTMQP--------MDAEVKQVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSL 1411
             SSS M+         MD +   V+ALAKKALSAS +A SL ++ + +G D ++S +S  
Sbjct: 136  FSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKLLGADLEDSPSSLG 195

Query: 1410 VSTNPG-ELETKKVKFVKSTRLLERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDAN 1234
              ++P   LE K V+   STRLLER+SK+R+  K  V V E++ S + E ++K + +  +
Sbjct: 196  AISSPNLPLEEKTVR---STRLLERRSKKRRNPK--VAVHENHGSRRAEVQRKIN-EGYD 249

Query: 1233 LHDPLRMFLARPVTRXXXXXXXXXXLIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAA 1054
              DPLR+FL  P TR          LI  I+  M+LEE + R      REPT+VEWAEA 
Sbjct: 250  PKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKREPTVVEWAEAV 309

Query: 1053 SLSSHELKSQLHLGNSSREKLICANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQK 874
             LS   L+SQLH GN SR+KLI ANLRMVV+IAKQY+GRGL+LQDLLQEGSMGLM SV+K
Sbjct: 310  GLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQEGSMGLMNSVEK 369

Query: 873  FKPQAGCRFATYAYWWIRQSIRRAIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEP 694
            FKP AGCRFA+YAYWWIRQ++R+AIFQ+S+ IRLPE +Y+++ KV EAKR  I+EG+H+P
Sbjct: 370  FKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAKRLFIQEGHHDP 429

Query: 693  TQKQIADQAGMTVEKLQKLRSIQKITLSLQKPVWANDSXXXXXXXXXXXXXXPDASASKQ 514
            T+++IA++ G+T+EKLQ+L    ++ LS+Q+PVWA+                PD S +KQ
Sbjct: 430  TKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTGIEIPDVSVAKQ 489

Query: 513  IMRNHITNLLSVLNPKERKVIRLRYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKL 334
            +MR H+ NLL VL PKER++IRLR+GIG  + ++L++IG++ G SKER+RQ+E RAL KL
Sbjct: 490  LMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERVRQLEQRALHKL 549

Query: 333  KQYSESHGLDAYKELLI 283
            KQ   SHGL++Y +LL+
Sbjct: 550  KQCLSSHGLESYTDLLV 566


>ref|XP_009794392.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic isoform X2
            [Nicotiana sylvestris]
 ref|XP_016467963.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
            isoform X2 [Nicotiana tabacum]
          Length = 545

 Score =  478 bits (1230), Expect = e-159
 Identities = 264/533 (49%), Positives = 360/533 (67%), Gaps = 21/533 (3%)
 Frame = -1

Query: 1821 PAAPTHSSMLATTLAQHFPTSVLIQEQRRESKPLLQTLKEEKSSPETVDN---------- 1672
            P   +H + L+ +      +SV+  EQ+ E++  L ++KEEK+S  T+D           
Sbjct: 13   PTTFSHKTQLSRSSPSSISSSVINPEQQFENRLQLHSVKEEKTSLATIDRRLVEAASSAM 72

Query: 1671 DEVDAISSDQYLKEFQSQLLQWPGL---WLPSHTREK--------SLSSSTMQPMDAEVK 1525
            +E DA+ S+Q +   Q QLL+ PGL   +   H +EK        SLS    + M+ E  
Sbjct: 73   EENDAVDSEQNINALQVQLLRSPGLSYLFSSYHLKEKVPLTLDTESLSDKGEKLMNFEPH 132

Query: 1524 QVIALAKKALSASIEAASLVDDTESIGVDHDNSVASSLVSTNPGELETKKVKFVKSTRLL 1345
             V+ALA+KAL AS EAA L +D++ +G + D+S+  +L+STN  + + K  +  +STRLL
Sbjct: 133  NVVALARKALLASREAALLAEDSKLLGTNFDDSIFPNLLSTNLTDDKLKDQRIARSTRLL 192

Query: 1344 ERQSKRRKGSKSNVIVRESNASTKPEPEKKTSYKDANLHDPLRMFLARPVTRXXXXXXXX 1165
            ER+SK+R    S   V+E+N S +P+  ++ + +  +L+DPLRMFL  P TR        
Sbjct: 193  ERRSKKRGAPTSKHQVQETNRSERPDVRRRVN-ESIDLNDPLRMFLWGPETRQLLTVKEE 251

Query: 1164 XXLIANIKGGMKLEEARSRFHEQFNREPTLVEWAEAASLSSHELKSQLHLGNSSREKLIC 985
              LI  I+  MKL+E + R   QF+REPTL+EWAEAA L+S EL+SQL  G SSR+KLI 
Sbjct: 252  SELIVKIQNTMKLQEVKHRLQTQFDREPTLIEWAEAAGLTSRELQSQLRSGKSSRDKLIN 311

Query: 984  ANLRMVVYIAKQYRGRGLDLQDLLQEGSMGLMRSVQKFKPQAGCRFATYAYWWIRQSIRR 805
            ANLRMVV+IAKQY+GRGL LQDLLQEGS+GLM+SV+KFKPQAGCRF TYAYWWIRQ +R+
Sbjct: 312  ANLRMVVHIAKQYQGRGLSLQDLLQEGSVGLMKSVEKFKPQAGCRFPTYAYWWIRQGVRK 371

Query: 804  AIFQNSKLIRLPEGVYTMMYKVSEAKRSCIREGNHEPTQKQIADQAGMTVEKLQKLRSIQ 625
            AIFQ+S+ IRLPE VY ++ KV +AK+ CI++GNH PT++ IA  AGM+VE+LQ L S  
Sbjct: 372  AIFQHSRTIRLPENVYALLSKVKDAKKLCIQQGNHHPTREDIASCAGMSVERLQSLLSAA 431

Query: 624  KITLSLQKPVWANDSXXXXXXXXXXXXXXPDASASKQIMRNHITNLLSVLNPKERKVIRL 445
            +  LS+Q+ VW +                P+ S SKQ+MR H+ NLL+VL+PKERK+IRL
Sbjct: 432  RTPLSMQQSVWTDQDATFQEITADNAIEAPELSVSKQLMRRHVRNLLNVLSPKERKIIRL 491

Query: 444  RYGIGCEVRKSLADIGIMLGVSKERIRQVESRALFKLKQYSESHGLDAYKELL 286
            R+GIG   RKSL++IG + G+SKER+RQ+ESRAL++LKQ   SHGLDAY +LL
Sbjct: 492  RFGIGDGERKSLSEIGAVFGLSKERVRQLESRALYRLKQNLSSHGLDAYNDLL 544