BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00007052
         (1164 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81017.1| gag-pol polymerase, partial [Arabidopsis lyrata s...   607   0.0  
gb|OTG28738.1| putative zinc finger, CCHC-type [Helianthus annuus]    578   0.0  
gb|PPD96412.1| hypothetical protein GOBAR_DD06575 [Gossypium bar...   465   e-149
gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposo...   388   e-127
gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposo...   378   e-120
gb|EEE51974.1| hypothetical protein OsJ_33644 [Oryza sativa Japo...   368   e-118
gb|ABA94191.1| retrotransposon protein, putative, Ty1-copia subc...   371   e-116
emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]         375   e-115
gb|AAV31347.1| putative polyprotein [Oryza sativa Japonica Group]     370   e-115
gb|ABA98555.1| retrotransposon protein, putative, Ty1-copia subc...   373   e-114
gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]     372   e-114
gb|AAS01934.1| putative Integrase core domain containing protein...   369   e-114
gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subc...   371   e-114
gb|ABF96953.1| retrotransposon protein, putative, Ty1-copia subc...   369   e-114
gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subc...   368   e-114
gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japoni...   370   e-114
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Ja...   370   e-114
gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Jap...   370   e-113
gb|ABA93952.1| retrotransposon protein, putative, Ty1-copia subc...   370   e-113
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]         370   e-113

>gb|ABW81017.1| gag-pol polymerase, partial [Arabidopsis lyrata subsp. lyrata]
          Length = 1034

 Score =  607 bits (1564), Expect = 0.0
 Identities = 285/387 (73%), Positives = 323/387 (83%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLCD+HAT SLGNKKYF+TFIDD SRFCYVYLLH KDEAL+KFKV+KTEVELQ   L+
Sbjct: 458  HSDLCDIHATSSLGNKKYFITFIDDYSRFCYVYLLHAKDEALEKFKVYKTEVELQHSDLV 517

Query: 181  KRLRTDRGGEYMDTQYFQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSGLSQ 360
            K+LRTDRGGEY D  YFQSVGIIHETTAPYTPQQNG+ ERKNRVLKEMVNSMLSYSGLS 
Sbjct: 518  KKLRTDRGGEYYDPTYFQSVGIIHETTAPYTPQQNGVFERKNRVLKEMVNSMLSYSGLSD 577

Query: 361  GFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQKTLG 540
            GFWGEAMLTACYLLNRVPNKRNK+TPYELW K+KPNLNYL+VWGCRA+VRLP PK KTLG
Sbjct: 578  GFWGEAMLTACYLLNRVPNKRNKITPYELWYKKKPNLNYLRVWGCRAIVRLPQPKIKTLG 637

Query: 541  ERGIDCIFVGYAEHSKAFRFYVIEPNEYVSINSIIESRDANFDENRFSSVPRPSQRIPNG 720
            ERGIDCIF+GYA HSKA+RFYVIEPN+ ++++++IESRDA FDENRFS++PR    +P+ 
Sbjct: 638  ERGIDCIFIGYALHSKAYRFYVIEPNDSIAVHTVIESRDAIFDENRFSTIPRQKDLVPSS 697

Query: 721  THDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYLVEGTRDEVSD 900
            +                            LRKSKR R  KSFGP+FQLYLVEGTRDE   
Sbjct: 698  S-----------GTKEGDDTFVPPNESPTLRKSKRGRIEKSFGPDFQLYLVEGTRDETGF 746

Query: 901  QYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLPPGCKPLGCKW 1080
            QYSYC+ ++D+P+TF EAM S D+ FWKEA+NDEMDSIMGNNTW L DLPPGCKPL CKW
Sbjct: 747  QYSYCYHIDDEPRTFSEAMMSNDVIFWKEAVNDEMDSIMGNNTWFLTDLPPGCKPLACKW 806

Query: 1081 IFKRKMKVDGTIEKFKARLVIQGFKQK 1161
            IFK+K+KVDGTI+KFKARLV+QGF+QK
Sbjct: 807  IFKKKIKVDGTIDKFKARLVVQGFRQK 833


>gb|OTG28738.1| putative zinc finger, CCHC-type [Helianthus annuus]
          Length = 1330

 Score =  578 bits (1489), Expect = 0.0
 Identities = 272/387 (70%), Positives = 315/387 (81%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLCD HATPSLGNKKY VTFIDD++RFCYVYLLH KDEAL+KFK++K EVEL    LI
Sbjct: 522  HSDLCDFHATPSLGNKKYVVTFIDDSTRFCYVYLLHAKDEALEKFKIYKQEVELHRSGLI 581

Query: 181  KRLRTDRGGEYMDTQYFQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSGLSQ 360
            K L TDRGGEY D  YFQS GIIH TTAPYTP+QNG++ERKNR LKEMVN+MLSYSGLS+
Sbjct: 582  KTLHTDRGGEYFDPVYFQSTGIIHHTTAPYTPEQNGVAERKNRTLKEMVNTMLSYSGLSE 641

Query: 361  GFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQKTLG 540
            GFWGEAMLTACYLLNRVPNKRNK TP+ELW ++ P L+ L+VWGCRAVVRL DPK + +G
Sbjct: 642  GFWGEAMLTACYLLNRVPNKRNKTTPHELWYRKPPELHKLRVWGCRAVVRLTDPKIRNIG 701

Query: 541  ERGIDCIFVGYAEHSKAFRFYVIEPNEYVSINSIIESRDANFDENRFSSVPRPSQRIPNG 720
            ERGIDCIF+GYAEHS A RFYVIEPN+YVS++++IE+R+A +DENRFSS+PRP   +P+ 
Sbjct: 702  ERGIDCIFIGYAEHSFAHRFYVIEPNDYVSVHTVIEARNAEYDENRFSSMPRPRDMVPSS 761

Query: 721  THDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYLVEGTRDEVSD 900
            ++                           LR+S R R  KSFG +FQLYLVEG+RDE+  
Sbjct: 762  SNS--------------HVADQVIDTPPELRRSGRARKAKSFGDDFQLYLVEGSRDEIKI 807

Query: 901  QYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLPPGCKPLGCKW 1080
            QY YCF +E+DPKT+ EAM S+D+AFWKEAINDEMDSIM NNTW L DLPPGCKPLGCKW
Sbjct: 808  QYQYCFNIEEDPKTYSEAMASRDVAFWKEAINDEMDSIMQNNTWKLSDLPPGCKPLGCKW 867

Query: 1081 IFKRKMKVDGTIEKFKARLVIQGFKQK 1161
            IFK+KMKVDG+IEKFKARLVIQGF+QK
Sbjct: 868  IFKKKMKVDGSIEKFKARLVIQGFRQK 894


>gb|PPD96412.1| hypothetical protein GOBAR_DD06575 [Gossypium barbadense]
          Length = 1355

 Score =  465 bits (1197), Expect = e-149
 Identities = 224/362 (61%), Positives = 274/362 (75%), Gaps = 3/362 (0%)
 Frame = +1

Query: 85   FCYVYLLHTKDEALDKFKVFKTEVELQLGSLIKRLRTDRGGEYMDTQYFQSVGIIHETTA 264
            +CYVYLLH+KDEALDKFKV+K+EVELQ  S IK LR+DRGGEY +  YF+  GI+H+ +A
Sbjct: 580  YCYVYLLHSKDEALDKFKVYKSEVELQCESFIKCLRSDRGGEYYNPSYFELTGIVHQVSA 639

Query: 265  PYTPQQNGISERKNRVLKEMVNSMLSYSGLSQGFWGEAMLTACYLLNRVPNKRNKVTPYE 444
            PYTPQQNG++ERKNRVL EM            GFWGEA+LTAC++LNRVPNK  K+TPYE
Sbjct: 640  PYTPQQNGVAERKNRVLIEM------------GFWGEAVLTACHILNRVPNKETKITPYE 687

Query: 445  LWTKRKPNLNYLKVWGCRAVVRLPDPKQKTLGERGIDCIFVGYAEHSKAFRFYVIEPNEY 624
             W KRKPNLNYLKVWGCRA+V++P PK+K LGERGI+CIF+GYA +SKA+RF VIEPN+ 
Sbjct: 688  QWKKRKPNLNYLKVWGCRAIVKVPTPKRKKLGERGIECIFIGYAHNSKAYRFIVIEPNDS 747

Query: 625  VSINSIIESRDANFDENRFSSVPR---PSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXX 795
            +SIN++IESRDA FDENRF+S+ R   P Q I +   +                      
Sbjct: 748  ISINTVIESRDAIFDENRFNSISRQLQPQQLIHSSNEN----------EIPLKQIDNNDE 797

Query: 796  XXXXLRKSKRVRTPKSFGPEFQLYLVEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIA 975
                LR+SKR++  K FGP+F ++LVEG  + + ++  YC+  E DP TFEEA+KSQD A
Sbjct: 798  SCQELRRSKRIKKVKDFGPDFIMFLVEGKGESICNKIPYCYNTESDPITFEEAVKSQDSA 857

Query: 976  FWKEAINDEMDSIMGNNTWVLVDLPPGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFK 1155
            FWKEAINDEMDSIMGN TW+LVDLPPG KP+GCKWIFK+KMKVDGTI+KFKARLV +GF 
Sbjct: 858  FWKEAINDEMDSIMGNQTWILVDLPPGSKPIGCKWIFKKKMKVDGTIDKFKARLVAKGFT 917

Query: 1156 QK 1161
            Q+
Sbjct: 918  QR 919


>gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 565

 Score =  388 bits (996), Expect = e-127
 Identities = 196/390 (50%), Positives = 252/390 (64%), Gaps = 4/390 (1%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSD+CD +   + G KKYF+TFIDD S++CYVYL+  K E  +KFKV+K EVE QL   I
Sbjct: 85   HSDICDSNGVITRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLEKSI 144

Query: 181  KRLRTDRGGEYMDTQ---YFQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            K LR+DRGGEY   +   +F++ GIIHE T PY PQ NGI+ERKNR L +M+N+ML  SG
Sbjct: 145  KILRSDRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINAMLISSG 204

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L    WGEA+ TAC++LNR+P K +  TPYELW  RKPNL YLKVWGC A V +P  K++
Sbjct: 205  LPDNLWGEALFTACHILNRIPYKNSDKTPYELWKNRKPNLKYLKVWGCLAKVNIPINKKR 264

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRFSSVPRPSQR 708
             +G + +DC+F+GY+ HS  +RF VI      +S N I+ESRDA F EN F    + S+ 
Sbjct: 265  KIGPKTVDCVFLGYSLHSTTYRFLVINSEVSEISNNIIMESRDAVFFENIFPLKNKLSKP 324

Query: 709  IPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYLVEGTRD 888
            +    +DT                          R SKR+R  K FGPEF          
Sbjct: 325  V----YDTSSSVLPSSSTVNKDFEP---------RISKRIRKAKDFGPEF---------- 361

Query: 889  EVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLPPGCKPL 1068
                   Y F++EDDPKT+ EAM+S D  FWKEAINDE+DS+  N TW L DLPPGCK +
Sbjct: 362  -------YSFLLEDDPKTYSEAMRSVDAPFWKEAINDEIDSLKINKTWFLTDLPPGCKSI 414

Query: 1069 GCKWIFKRKMKVDGTIEKFKARLVIQGFKQ 1158
            GCKW+F++K++ DG+I+KFKARLV+ G+KQ
Sbjct: 415  GCKWVFRKKLRTDGSIDKFKARLVVIGYKQ 444


>gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 880

 Score =  378 bits (970), Expect = e-120
 Identities = 192/390 (49%), Positives = 250/390 (64%), Gaps = 4/390 (1%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSD+CD +   + G KKYF+TFIDD S++CYVYL+  K E  +KFKV+K EVE QL   I
Sbjct: 415  HSDICDSNGVITRGGKKYFITFIDDFSKYCYVYLIIHKSELFEKFKVYKAEVENQLERSI 474

Query: 181  KRLRTDRGGEYMDTQ---YFQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            K LR+DRGGEY   +   +F++ GIIHE T PY PQ NGI+ERKNR L +M+N+ML  SG
Sbjct: 475  KILRSDRGGEYSSNEMGEFFETHGIIHEVTPPYAPQSNGIAERKNRTLLDMINAMLISSG 534

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L    WGEA+ TAC++LNR+P K +  TPYELW  RKPNL YLKVWGC A V +P  K++
Sbjct: 535  LPDNLWGEALFTACHILNRIPYKNSDKTPYELWKNRKPNLKYLKVWGCLAKVNIPINKKR 594

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRFSSVPRPSQR 708
             +G + +DC+F+GY+ HS  +RF VI+     +S N I+ESRDA F EN F    + S+ 
Sbjct: 595  KIGPKTVDCVFLGYSLHSTTYRFLVIKSEVSEISNNIIMESRDAIFFENIFPLKNKLSKP 654

Query: 709  IPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYLVEGTRD 888
            +    +DT                          R SKR+R  K FGP F          
Sbjct: 655  V----YDTSSSILPSSSTVNKDFET---------RISKRIRKAKDFGPGF---------- 691

Query: 889  EVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLPPGCKPL 1068
                   Y F++E+DPKT+ EAM+  D  FWKEAINDE+DS+  N TW L DL PGCK +
Sbjct: 692  -------YSFLLENDPKTYSEAMRYVDAPFWKEAINDEIDSLKINKTWFLTDLSPGCKSI 744

Query: 1069 GCKWIFKRKMKVDGTIEKFKARLVIQGFKQ 1158
            GCKW+F++K++ DG+I+KFKARLV+ G+KQ
Sbjct: 745  GCKWVFRKKLRTDGSIDKFKARLVVIGYKQ 774


>gb|EEE51974.1| hypothetical protein OsJ_33644 [Oryza sativa Japonica Group]
          Length = 679

 Score =  368 bits (945), Expect = e-118
 Identities = 186/397 (46%), Positives = 256/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+T IDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 234  HSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKI 293

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            KRLR++RGGE+   ++    +  GIIHE T PY+P+ NGI+ERKNR L ++VN+ML  +G
Sbjct: 294  KRLRSNRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAG 353

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ ++LNRVPN+    TPYE+W  RKP+L+YL+ WGC A V +P  K++
Sbjct: 354  LPKAWWGEALLTSNHVLNRVPNRNKNKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKR 413

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     + + +I+ESRDA F E+ F      S  
Sbjct: 414  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGS 473

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IP+                               R+SKR RT KSFG +F +YL
Sbjct: 474  NQPSEIIPSSITPPEQTEHTHELVSEEDVSEAP-------RRSKRQRTAKSFGDDFTVYL 526

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+  EMDSI+ N TW + + P
Sbjct: 527  VD-----------------DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 569

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ DGTIEK+KARLV +G+ QK
Sbjct: 570  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 606


>gb|ABA94191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1060

 Score =  371 bits (952), Expect = e-116
 Identities = 188/397 (47%), Positives = 258/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+TFIDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 362  HSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKI 421

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            KRLR+DRGGE+   ++    +  GIIHE T PY+P+ NGI+ERKNR L ++VN+ML  +G
Sbjct: 422  KRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAG 481

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ ++LNRVPN+    TPYE+W  RKP+L+YL+ WGC A V +P  K++
Sbjct: 482  LPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKR 541

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     +++ +I+ESRDA F E+ F      S  
Sbjct: 542  KLGPKTVDCVFLGYAYHSIAYRFLIVKSEVPDMNVGTIMESRDAIFFESFFPMKDTHSGS 601

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IP+                               R+SKR RT KSFG +F +YL
Sbjct: 602  NQPSEIIPSSITPPEQTEHTHELVSEEDVSEAP-------RRSKRQRTAKSFGDDFTVYL 654

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+  EMDSI+ N TW + + P
Sbjct: 655  VD-----------------DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 697

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ DGTIEK+KARLV +G+ QK
Sbjct: 698  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 734


>emb|CAE04792.1| OSJNBb0018J12.5 [Oryza sativa Japonica Group]
          Length = 1320

 Score =  375 bits (962), Expect = e-115
 Identities = 189/397 (47%), Positives = 258/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+TFIDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 494  HSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKI 553

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            KRLR+DRGGE+   ++    +  GIIHE T PY+P+ NGI+ERKNR L ++VN+ML  +G
Sbjct: 554  KRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAG 613

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ ++LNRVPN+    TPYE+W  RKP+L+YL++WGC A V +P  K++
Sbjct: 614  LPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRIWGCLAKVNVPITKKR 673

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPNEY-VSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     + + +IIESRDA F E+ F      S  
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVLDMHVGTIIESRDATFFESFFPMKDTHSGS 733

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IP+                               R+SKR RT KSFG +F +YL
Sbjct: 734  NQPSEIIPSSITPPEQTEHTHELVSEEDVSEAP-------RRSKRQRTAKSFGDDFTVYL 786

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+  EMDSI+ N TW + + P
Sbjct: 787  VD-----------------DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ DGTIEK+KARLV +G+ QK
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866


>gb|AAV31347.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1059

 Score =  370 bits (949), Expect = e-115
 Identities = 187/397 (47%), Positives = 256/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+T IDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 603  HSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKI 662

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            KRLR+DRGGE+   ++    +  GIIHE T PY+P+ NGI+ERKNR L ++VN+ML  +G
Sbjct: 663  KRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAG 722

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ ++LNRVPN+    TPYE+W  RKP+L+YL+ WGC A V +P  K++
Sbjct: 723  LPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKR 782

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     + + +I+ESRDA F E+ F      S  
Sbjct: 783  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGS 842

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IP+                               R+SKR RT KSFG +F +YL
Sbjct: 843  NQPSEIIPSSITPPEQTEHTHELVSEEDVSEAP-------RRSKRQRTAKSFGDDFTVYL 895

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+  EMDSI+ N TW + + P
Sbjct: 896  VD-----------------DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 938

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ DGTIEK+KARLV +G+ QK
Sbjct: 939  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 975


>gb|ABA98555.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1361

 Score =  373 bits (957), Expect = e-114
 Identities = 188/397 (47%), Positives = 257/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+T IDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 579  HSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKI 638

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            KRLR+DRGGE+   ++   F+  GIIHE T PY+P+ NGI+ERKNR L ++VN+ML  +G
Sbjct: 639  KRLRSDRGGEFFSNEFDLFFEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAG 698

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ ++LNRVPN+    TPYE+W  RKP+L+YL+ WGC A V +P  K++
Sbjct: 699  LPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKR 758

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     + + +I+ESRDA F E+ F      S  
Sbjct: 759  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDIHSGS 818

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IP+                               R+SKR RT KSFG +F +YL
Sbjct: 819  NQPSEIIPSSITPPEQTEHTHELVSEEDVSEAP-------RRSKRQRTAKSFGDDFTVYL 871

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+  EMDSI+ N TW + + P
Sbjct: 872  VD-----------------DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 914

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ DGTIEK+KARLV +G+ QK
Sbjct: 915  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 951


>gb|AAV24814.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1289

 Score =  372 bits (954), Expect = e-114
 Identities = 188/397 (47%), Positives = 257/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+TFIDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 494  HSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKI 553

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            KRLR+DRGGE+   ++    +  GIIHE T PY+P+ NGI+ERKNR L ++VN+ML  +G
Sbjct: 554  KRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAG 613

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ ++LNRVPN+    TPYE+W  RKP+L+YL+ WGC A V +P  K++
Sbjct: 614  LPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIDRKPSLSYLRTWGCLAKVNVPITKKR 673

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     + + +I+ESRDA F E+ F      S  
Sbjct: 674  KLGPKTVDCVFLGYAYHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGS 733

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IP+                               R+SKR RT KSFG +F +YL
Sbjct: 734  NQPSEIIPSSITPPEQTEHTHELVSEEDVSEAP-------RRSKRQRTAKSFGDDFTVYL 786

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+  EMDSI+ N TW + + P
Sbjct: 787  VD-----------------DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ DGTIEK+KARLV +G+ QK
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866


>gb|AAS01934.1| putative Integrase core domain containing protein [Oryza sativa
            Japonica Group]
          Length = 1180

 Score =  369 bits (948), Expect = e-114
 Identities = 187/397 (47%), Positives = 256/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+T IDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 372  HSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKI 431

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            KRLR+DRGGE+   ++    +  GIIHE + PY+P+ NGI+ERKNR L ++VN+ML  +G
Sbjct: 432  KRLRSDRGGEFFSNEFDLFCEEHGIIHERSPPYSPESNGIAERKNRTLTDLVNAMLDTAG 491

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ ++LNRVPN+    TPYE+W  RKP+L+YL+ WGC A V +P  K++
Sbjct: 492  LPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKR 551

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     + + +I+ESRDA F E+ F      S  
Sbjct: 552  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGS 611

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IP+                               RKSKR RT KSFG +F +YL
Sbjct: 612  NQPSEIIPSSITPPEQTEHTHELVSEEDVSEAP-------RKSKRQRTAKSFGDDFTVYL 664

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+  EMDSI+ N TW + + P
Sbjct: 665  VD-----------------DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 707

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ DGTIEK+KARLV +G+ QK
Sbjct: 708  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 744


>gb|ABA99473.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1287

 Score =  371 bits (952), Expect = e-114
 Identities = 188/397 (47%), Positives = 257/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+TFIDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 455  HSDLCEMNGVLTKGGKRYFMTFIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKI 514

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            KRLR+DRGGE+   ++    +  GIIHE T PY+P+ NGI+ERKNR L ++VN+ML  +G
Sbjct: 515  KRLRSDRGGEFFSNEFDLFCEEHGIIHEMTPPYSPESNGIAERKNRTLTDLVNAMLDTAG 574

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ ++LNRVPN+    TPYE+W  RKP+L+YL+ WGC A V +P  K++
Sbjct: 575  LPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKR 634

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     + + +I+ESRDA F E+ F      S  
Sbjct: 635  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDAIFFESFFPMKDTHSGS 694

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IP+                               R+SKR RT KSFG +F +YL
Sbjct: 695  NQPSEIIPSSITPPEQTEHTHELVSEEDVSEAP-------RRSKRQRTAKSFGDDFTVYL 747

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+  EMDSI+ N TW + + P
Sbjct: 748  VD-----------------DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 790

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ DGTIEK+KARLV +G+ QK
Sbjct: 791  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 827


>gb|ABF96953.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1197

 Score =  369 bits (948), Expect = e-114
 Identities = 187/397 (47%), Positives = 256/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+T IDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 389  HSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKI 448

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            KRLR+DRGGE+   ++    +  GIIHE + PY+P+ NGI+ERKNR L ++VN+ML  +G
Sbjct: 449  KRLRSDRGGEFFSNEFDLFCEEHGIIHERSPPYSPESNGIAERKNRTLTDLVNAMLDTAG 508

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ ++LNRVPN+    TPYE+W  RKP+L+YL+ WGC A V +P  K++
Sbjct: 509  LPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKR 568

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     + + +I+ESRDA F E+ F      S  
Sbjct: 569  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGS 628

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IP+                               RKSKR RT KSFG +F +YL
Sbjct: 629  NQPSEIIPSSITPPEQTEHTHELVSEEDVSEAP-------RKSKRQRTAKSFGDDFTVYL 681

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+  EMDSI+ N TW + + P
Sbjct: 682  VD-----------------DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 724

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ DGTIEK+KARLV +G+ QK
Sbjct: 725  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 761


>gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1151

 Score =  368 bits (944), Expect = e-114
 Identities = 186/397 (46%), Positives = 256/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+T IDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 365  HSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKI 424

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            KRLR+DRGGE+   ++    +  GIIHE T PY+P+ NGI+ERKNR L ++VN+ML  +G
Sbjct: 425  KRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAG 484

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ ++LNRVPN+    TPYE+W  RKP+L+YL+ WGC A V +P  K++
Sbjct: 485  LPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKR 544

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     + + +I+ESRDA F E+ F      S  
Sbjct: 545  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGS 604

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IP+                               R+SKR RT KSFG +F +YL
Sbjct: 605  NQPSEIIPSSITPPEQTEHTHELVSEEDVSEAP-------RRSKRQRTAKSFGDDFTVYL 657

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+  EMDSI+ N TW + + P
Sbjct: 658  VD-----------------DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 700

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ +GTIEK+KARLV +G+ QK
Sbjct: 701  YGCKPVGCKWVFKKKLRPNGTIEKYKARLVAKGYTQK 737


>gb|AAR01682.1| putative gag and pol protein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  370 bits (949), Expect = e-114
 Identities = 187/397 (47%), Positives = 256/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+T IDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 494  HSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKI 553

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            KRLR+DRGGE+   ++    +  GIIHE T PY+P+ NGI+ERKNR L ++VN+ML  +G
Sbjct: 554  KRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAG 613

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ ++LNRVPN+    TPYE+W  RKP+L+YL+ WGC A V +P  K++
Sbjct: 614  LPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKR 673

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     + + +I+ESRDA F E+ F      S  
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGS 733

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IP+                               R+SKR RT KSFG +F +YL
Sbjct: 734  NQPSEIIPSSITPPEQTEHTHELVSEEDVSEAP-------RRSKRQRTAKSFGDDFTVYL 786

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+  EMDSI+ N TW + + P
Sbjct: 787  VD-----------------DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ DGTIEK+KARLV +G+ QK
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866


>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa Japonica Group]
          Length = 1302

 Score =  370 bits (949), Expect = e-114
 Identities = 187/397 (47%), Positives = 256/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+T IDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 494  HSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKI 553

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            KRLR+DRGGE+   ++    +  GIIHE T PY+P+ NGI+ERKNR L ++VN+ML  +G
Sbjct: 554  KRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAG 613

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ ++LNRVPN+    TPYE+W  RKP+L+YL+ WGC A V +P  K++
Sbjct: 614  LPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKR 673

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     + + +I+ESRDA F E+ F      S  
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGS 733

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IP+                               R+SKR RT KSFG +F +YL
Sbjct: 734  NQPSEIIPSSITPPEQTEHTHELVSEEDVSEAP-------RRSKRQRTAKSFGDDFTVYL 786

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+  EMDSI+ N TW + + P
Sbjct: 787  VD-----------------DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ DGTIEK+KARLV +G+ QK
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866


>gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1308

 Score =  370 bits (949), Expect = e-113
 Identities = 187/397 (47%), Positives = 256/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+T IDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 494  HSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKI 553

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            KRLR+DRGGE+   ++    +  GIIHE T PY+P+ NGI+ERKNR L ++VN+ML  +G
Sbjct: 554  KRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAG 613

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ ++LNRVPN+    TPYE+W  RKP+L+YL+ WGC A V +P  K++
Sbjct: 614  LPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKR 673

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     + + +I+ESRDA F E+ F      S  
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGS 733

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IP+                               R+SKR RT KSFG +F +YL
Sbjct: 734  NQPSEIIPSSITPPEQTEHTHELVSEEDVSEAP-------RRSKRQRTAKSFGDDFTVYL 786

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+  EMDSI+ N TW + + P
Sbjct: 787  VD-----------------DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ DGTIEK+KARLV +G+ QK
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866


>gb|ABA93952.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1336

 Score =  370 bits (950), Expect = e-113
 Identities = 187/397 (47%), Positives = 256/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+T IDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 494  HSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRKI 553

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
            KRLR+DRGGE+   ++    +  GIIHE T PY+P+ NGI ERKNR L ++VN+ML  +G
Sbjct: 554  KRLRSDRGGEFFSNEFDLFCEKHGIIHERTPPYSPESNGIGERKNRTLTDLVNAMLDTAG 613

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ ++LNRVPN+    TPYE+W  RKP+L+YL+ WGC A V +P  K++
Sbjct: 614  LPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKR 673

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     + + +I+ESRDA F E+ F      S  
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGS 733

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IPN                               R+SKR RT KSFG +F +YL
Sbjct: 734  NQPSEIIPNSITPPEQTEHTHELVSEEDVSEAP-------RRSKRQRTAKSFGDDFTVYL 786

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+ +EMDSI+ N TW + + P
Sbjct: 787  VD-----------------DTPKSISEAYASPDADYWKEAVRNEMDSIIANGTWEVTERP 829

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ DGTIEK+KARLV +G+ +K
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTRK 866


>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa Japonica Group]
          Length = 1319

 Score =  370 bits (949), Expect = e-113
 Identities = 187/397 (47%), Positives = 255/397 (64%), Gaps = 10/397 (2%)
 Frame = +1

Query: 1    HSDLCDLHATPSLGNKKYFVTFIDDASRFCYVYLLHTKDEALDKFKVFKTEVELQLGSLI 180
            HSDLC+++   + G K+YF+T IDDA+RFCYVYLL TKDEALD FK++K EVE QL   I
Sbjct: 494  HSDLCEMNGVLTKGGKRYFMTLIDDATRFCYVYLLKTKDEALDYFKIYKAEVENQLDRRI 553

Query: 181  KRLRTDRGGEYMDTQY---FQSVGIIHETTAPYTPQQNGISERKNRVLKEMVNSMLSYSG 351
             RLR+DRGGE+   ++    +  GIIHE T PY+P+ NGI+ERKNR L ++VN+ML  +G
Sbjct: 554  NRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAG 613

Query: 352  LSQGFWGEAMLTACYLLNRVPNKRNKVTPYELWTKRKPNLNYLKVWGCRAVVRLPDPKQK 531
            L + +WGEA+LT+ Y+LNRVPN+    TPYE+W  RKP+L+YL+ WGC A V +P  K++
Sbjct: 614  LPKAWWGEALLTSNYVLNRVPNRNKDKTPYEIWIGRKPSLSYLRTWGCLAKVNVPITKKR 673

Query: 532  TLGERGIDCIFVGYAEHSKAFRFYVIEPN-EYVSINSIIESRDANFDENRF------SSV 690
             LG + +DC+F+GYA HS A+RF +++     + + +I+ESRDA F E+ F      S  
Sbjct: 674  KLGPKTVDCVFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPMKDTHSGS 733

Query: 691  PRPSQRIPNGTHDTGXXXXXXXXXXXXXXXXXXXXXXXXLRKSKRVRTPKSFGPEFQLYL 870
             +PS+ IP+                               R+SKR RT KSFG +F +YL
Sbjct: 734  NQPSEIIPSSITPPEQTEHTHELVSEEDVSEAP-------RRSKRQRTAKSFGDDFTVYL 786

Query: 871  VEGTRDEVSDQYSYCFIVEDDPKTFEEAMKSQDIAFWKEAINDEMDSIMGNNTWVLVDLP 1050
            V+                 D PK+  EA  S D  +WKEA+  EMDSI+ N TW + + P
Sbjct: 787  VD-----------------DTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERP 829

Query: 1051 PGCKPLGCKWIFKRKMKVDGTIEKFKARLVIQGFKQK 1161
             GCKP+GCKW+FK+K++ DGTIEK+KARLV +G+ QK
Sbjct: 830  YGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQK 866