BLASTX nr result

ID: Chrysanthemum21_contig00005784 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00005784
         (361 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KVI07819.1| hypothetical protein Ccrd_013816 [Cynara carduncu...    72   4e-12
ref|XP_021970997.1| extensin isoform X2 [Helianthus annuus]            69   3e-11
ref|XP_021970996.1| vegetative cell wall protein gp1 isoform X1 ...    69   3e-11
gb|OTG23640.1| putative hydroxyproline-rich glycoprotein family ...    69   4e-11

>gb|KVI07819.1| hypothetical protein Ccrd_013816 [Cynara cardunculus var. scolymus]
          Length = 508

 Score = 71.6 bits (174), Expect = 4e-12
 Identities = 37/68 (54%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
 Frame = +3

Query: 114 NPPLPSHPLQSIQHNRGHIXXXXXXXXXXXXXXXX---ALPPHYSSQPPSVVQPTMSAAS 284
           NP LPSHPLQS Q +R H+                   ALPPHYSSQ PS +QPTM A +
Sbjct: 131 NPSLPSHPLQSTQLSRSHLNAQTAPIPSPQSSQLSNMAALPPHYSSQAPSALQPTMPAVT 190

Query: 285 TPLQQPLH 308
           TPLQQPLH
Sbjct: 191 TPLQQPLH 198


>ref|XP_021970997.1| extensin isoform X2 [Helianthus annuus]
          Length = 344

 Score = 68.9 bits (167), Expect = 3e-11
 Identities = 41/83 (49%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +3

Query: 66  RDQXXXXXXXXXXXXINPPLPSHPLQSIQHNRGHIXXXXXXXXXXXXXXXXA-LPPHYSS 242
           RDQ              P LPS P Q IQHNRGHI                A LPP YS+
Sbjct: 77  RDQTSVPVPSSSIPPSTPTLPSLPSQPIQHNRGHINAQLVPPMPSPQPSNMAALPPQYST 136

Query: 243 QPP-SVVQPTMSAASTPLQQPLH 308
           QPP SV+QPTM  AS PLQQPLH
Sbjct: 137 QPPPSVIQPTMPPASVPLQQPLH 159


>ref|XP_021970996.1| vegetative cell wall protein gp1 isoform X1 [Helianthus annuus]
          Length = 370

 Score = 68.9 bits (167), Expect = 3e-11
 Identities = 41/83 (49%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +3

Query: 66  RDQXXXXXXXXXXXXINPPLPSHPLQSIQHNRGHIXXXXXXXXXXXXXXXXA-LPPHYSS 242
           RDQ              P LPS P Q IQHNRGHI                A LPP YS+
Sbjct: 103 RDQTSVPVPSSSIPPSTPTLPSLPSQPIQHNRGHINAQLVPPMPSPQPSNMAALPPQYST 162

Query: 243 QPP-SVVQPTMSAASTPLQQPLH 308
           QPP SV+QPTM  AS PLQQPLH
Sbjct: 163 QPPPSVIQPTMPPASVPLQQPLH 185


>gb|OTG23640.1| putative hydroxyproline-rich glycoprotein family protein
           [Helianthus annuus]
          Length = 413

 Score = 68.9 bits (167), Expect = 4e-11
 Identities = 41/83 (49%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +3

Query: 66  RDQXXXXXXXXXXXXINPPLPSHPLQSIQHNRGHIXXXXXXXXXXXXXXXXA-LPPHYSS 242
           RDQ              P LPS P Q IQHNRGHI                A LPP YS+
Sbjct: 103 RDQTSVPVPSSSIPPSTPTLPSLPSQPIQHNRGHINAQLVPPMPSPQPSNMAALPPQYST 162

Query: 243 QPP-SVVQPTMSAASTPLQQPLH 308
           QPP SV+QPTM  AS PLQQPLH
Sbjct: 163 QPPPSVIQPTMPPASVPLQQPLH 185


Top