BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00000203
         (2682 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF95196.1| replicase [Chrysanthemum virus B]                     646   0.0  
ref|YP_009022064.1| replicase [Gaillardia latent virus] >gi|6011...   248   e-118
ref|YP_001552317.1| replicase [Phlox virus B] >gi|157932100|gb|A...   236   e-103
gb|AKZ66614.1| replicase [Atractylodes mottle virus]                  289   3e-78
ref|YP_001165301.1| replicase [Phlox virus S] >gi|145206988|gb|A...   246   9e-64
ref|YP_001430021.1| replicase [Coleus vein necrosis virus] >gi|1...   131   2e-54
ref|YP_009224940.1| replicase polyprotein [Elderberry carlavirus...   203   8e-50
dbj|BAU20378.1| replicase [Daphne virus S]                            194   4e-47
ref|YP_006297586.1| unnamed protein product [American hop latent...   191   5e-46
gb|ALJ56053.1| putative viral replicase [American hop latent virus]   191   7e-46
ref|YP_009224952.1| replicase polyprotein [Elderberry carlavirus...   190   9e-46
ref|YP_595727.1| replicase [Daphne virus S] >gi|58415290|emb|CAF...   188   4e-45
gb|AVN98095.1| replicase [Chrysanthemum virus R]                      188   5e-45
emb|CAK54345.1| polyprotein, partial [Chrysanthemum virus B]          187   9e-45
gb|AEI55831.1| RNA dependent RNA polymerase [Potato virus H]          186   3e-44
ref|YP_006522434.1| RNA-dependent RNA polymerase [Potato virus H...   186   3e-44
emb|CAK54343.1| polyprotein, partial [Chrysanthemum virus B]          184   9e-44
emb|CAO78688.1| polyprotein [Chrysanthemum virus B]                   184   9e-44
emb|CAK97712.1| polyprotein, partial [Chrysanthemum virus B]          184   9e-44
ref|YP_001086452.2| polyprotein [Chrysanthemum virus B] >gi|1547...   184   9e-44

>dbj|BAF95196.1| replicase [Chrysanthemum virus B]
          Length = 2094

 Score =  646 bits (1667), Expect(2) = 0.0
 Identities = 322/359 (89%), Positives = 332/359 (92%)
 Frame = +1

Query: 1603 CPTALDRDNFILHSVAGDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFL 1782
            CP AL+ DNF+ H VAGDGNCFWYSLEKATALQW SVKEIAARC FTQ ELQ +KE QF 
Sbjct: 977  CPAALNLDNFVRHCVAGDGNCFWYSLEKATALQWNSVKEIAARCMFTQNELQEKKEAQFH 1036

Query: 1783 EGAFAEDEAIICAVATLKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKN 1962
            EGAFAEDEAIICAVATLKKNIIIYVEEQRAVYEY G C NADSIYLLLRNEHFEYIEPKN
Sbjct: 1037 EGAFAEDEAIICAVATLKKNIIIYVEEQRAVYEYAGICSNADSIYLLLRNEHFEYIEPKN 1096

Query: 1963 SCLLHAIAHALNRQFHEVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVIS 2142
            SCLLHAIAHALNRQFHEVLTVVERVLGSC+SGETWVGQGIDVADL FYF LFDIRACVIS
Sbjct: 1097 SCLLHAIAHALNRQFHEVLTVVERVLGSCLSGETWVGQGIDVADLEFYFGLFDIRACVIS 1156

Query: 2143 GSSAATYNEEGRVVANFILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGT 2322
            G SAATYNEEGRVVANFILS+GHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGT
Sbjct: 1157 GPSAATYNEEGRVVANFILSDGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGT 1216

Query: 2323 MLTYRAELARARVLADSLEAGSTGIISSKLFNQCPNLGAQIRTDGGFKDSQICCILGTFG 2502
            MLTYRAEL RARVLADSLEAGSTGIISSKLFNQ PNLGAQIRT+GGFKDSQ+CCILGTFG
Sbjct: 1217 MLTYRAELGRARVLADSLEAGSTGIISSKLFNQRPNLGAQIRTEGGFKDSQVCCILGTFG 1276

Query: 2503 AGKSSLFTEFTKKNPGKGVFYVSPRKALAQEHESKCMSLGKASVGALGGATRKSGRKER 2679
            AGKSSLFTEFTKKNPGKGVFYVSPRKALAQEHESKCMSLGK   G  G  T++ G +ER
Sbjct: 1277 AGKSSLFTEFTKKNPGKGVFYVSPRKALAQEHESKCMSLGKRRAGTFGRETKERGNRER 1335



 Score =  540 bits (1391), Expect(2) = 0.0
 Identities = 255/364 (70%), Positives = 281/364 (77%), Gaps = 18/364 (4%)
 Frame = +3

Query: 534  WYLGDKPDGKAMPRDFILQFAKIVGDVTGPVNRPKLTKRGCPPQFRYCRAKLGECDKCKG 713
            W L DKP+GKAMPRDFILQFA IV D+TG  NR KL KRGCPPQ RYCRAKLGECDKCKG
Sbjct: 592  WSLDDKPEGKAMPRDFILQFATIVSDITGSCNRQKLIKRGCPPQLRYCRAKLGECDKCKG 651

Query: 714  TDGKKSAENKASGGATNAQHAHSPEETGTSGEHEIPSAPAGQGGGNCSPKKEECETPDFE 893
            TDGK++ EN AS GAT  QHA++PE T TS  +E+P +PA QG G+C P  EE +T  FE
Sbjct: 652  TDGKRNVENGASEGATPEQHANNPEATETSEGNEMPDSPADQGDGSCPPAAEEHKTSGFE 711

Query: 894  EVAELPPLICICGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWYSLGGVPYRYNGGSHTSL 1073
            EV ELPPL+CICGLCIGVSTMRLPSGHNFKAPDQL+KR+AGWYSLGGVPY YNGGSHTSL
Sbjct: 712  EVVELPPLLCICGLCIGVSTMRLPSGHNFKAPDQLKKRKAGWYSLGGVPYHYNGGSHTSL 771

Query: 1074 GWPDWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESIFEVGSMVHTCNLDGYAS 1253
            GWPDWI+DWMFCNGIDS+YYNCCLYQ+YEKGGAIGFHQDNESIFEVGSMVHTCNLDG+AS
Sbjct: 772  GWPDWIRDWMFCNGIDSNYYNCCLYQVYEKGGAIGFHQDNESIFEVGSMVHTCNLDGHAS 831

Query: 1254 FGIMCTNRATDYDLKPGTHFTMPQNFQVTHRHALLNCSANRASLTFRRMK---------- 1403
            FGIMCT RATDYDLKPGTHFTMP+NFQ+TH+HALLNCSANRASLTFRRMK          
Sbjct: 832  FGIMCTKRATDYDLKPGTHFTMPENFQLTHKHALLNCSANRASLTFRRMKTSGSGHGDSA 891

Query: 1404 --------XXXEERGGSTPVNEEPXXXXXXXXXXXXEQTPVENTVEEPERTEPTGSKEHG 1559
                       +E G ++   +EP            E  P   T E P  T PT    +G
Sbjct: 892  QKGTTNGGVAEDEEGKTSSGKDEPPVDNSSSFGEETEDVPNGRTAETPGMTRPTQVNGNG 951

Query: 1560 KAGG 1571
            K GG
Sbjct: 952  KTGG 955



 Score =  317 bits (811), Expect = 2e-87
 Identities = 153/169 (90%), Positives = 163/169 (96%)
 Frame = +2

Query: 2   PKLIAAKLEVVKTVSLDDFVTFMAPYCFDVQLETVDFNYNSFFPLYDVAEADFGVALPEL 181
           PK IA KLEVVKTVSLDDFVTFMAPYCFDVQLETVDFNY+ FFPLYDVAEADFGVALPEL
Sbjct: 397 PKFIATKLEVVKTVSLDDFVTFMAPYCFDVQLETVDFNYDGFFPLYDVAEADFGVALPEL 456

Query: 182 IDDTFTMGNVAALCDRITRPYIGRHDRALVEKKETLLKIRETSLKRLVINLIIGNCFSDG 361
           ID+TFTMGNVA LCDRITRPY+GRHDRA+VEKKETLLKIRE SLKRLVINLIIGNCFS+G
Sbjct: 457 IDETFTMGNVAVLCDRITRPYVGRHDRAIVEKKETLLKIREASLKRLVINLIIGNCFSNG 516

Query: 362 IYHISASKTTVYIFHIFENCSNLLVPLKEVFKKLNNKQWVSESIQVAIS 508
           IY ISASKTTVYIFHIFENCSNLL+PLKEVF+KLNNK+WVSE+IQ+AIS
Sbjct: 517 IYQISASKTTVYIFHIFENCSNLLIPLKEVFRKLNNKEWVSEAIQIAIS 565


>ref|YP_009022064.1| replicase [Gaillardia latent virus]
 gb|AHN84511.1| replicase [Gaillardia latent virus]
          Length = 1990

 Score =  248 bits (634), Expect(2) = e-118
 Identities = 145/331 (43%), Positives = 197/331 (59%), Gaps = 1/331 (0%)
 Frame = +1

Query: 1627 NFILHSVAGDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLEGAFAEDE 1806
            N+ L  V GDGNCFW+ L KA ++    +K+   R  F   EL  R E Q     FAE+E
Sbjct: 900  NYNLIDVPGDGNCFWHCLSKAVSMGVKELKQACTRIDFKDEELNTRFEHQMQPRVFAEEE 959

Query: 1807 AIICAVATLKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCLLHAIA 1986
            AI+ A A L+  II+   E   V E+T         YL ++  HF+ IE KNSC++ AIA
Sbjct: 960  AIMAAAAILRAKIIVIAPEGPQVSEFTPHGELLQVHYLEMKANHFQLIELKNSCVIRAIA 1019

Query: 1987 HALNRQFHEVLTVVERVLGSCMSGETWV-GQGIDVADLGFYFSLFDIRACVISGSSAATY 2163
             A+NR+ HEVL V+E   G    G   + G G+++A+L  +FSLF I A V +G +    
Sbjct: 1020 SAMNRECHEVLKVLEES-GDLEEGSLLLSGLGVELAELEHFFSLFGIAALVEAGGTEHRL 1078

Query: 2164 NEEGRVVANFILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLTYRAE 2343
            NE G V A F L   HI +  KN SV  ++L+GE  GL+++N S++     G+ L Y+  
Sbjct: 1079 NETGPVPAYFKLENAHIEHIRKNCSVKSELLRGENLGLNITNRSLLYAEQCGSYLKYKPN 1138

Query: 2344 LARARVLADSLEAGSTGIISSKLFNQCPNLGAQIRTDGGFKDSQICCILGTFGAGKSSLF 2523
             +RA+VLAD   AG TGI++SKLFN   NL  +I  +G  ++S +  + GTFG GKS+ F
Sbjct: 1139 ESRAKVLADCFLAGRTGILNSKLFNNSGNLFDEINHNGEHEES-VLGVFGTFGCGKSTAF 1197

Query: 2524 TEFTKKNPGKGVFYVSPRKALAQEHESKCMS 2616
             +F   NPGKGVFYVSPRKALA+E  SK +S
Sbjct: 1198 RQFFHLNPGKGVFYVSPRKALAEEFRSKTLS 1228



 Score =  207 bits (527), Expect(2) = e-118
 Identities = 128/342 (37%), Positives = 166/342 (48%)
 Frame = +3

Query: 537  YLGDKPDGKAMPRDFILQFAKIVGDVTGPVNRPKLTKRGCPPQFRYCRAKLGECDKCKGT 716
            YL D+PDG A+P+ F   F  +VGD+   V   KL KR      R    +L E       
Sbjct: 588  YLCDQPDGIAVPKAFKKVFGTVVGDILAGV---KLRKR------RVVGFRLAE------- 631

Query: 717  DGKKSAENKASGGATNAQHAHSPEETGTSGEHEIPSAPAGQGGGNCSPKKEECETPDFEE 896
                                 +PE T   GE  +   P  Q   +  P +EE   P   +
Sbjct: 632  -------------------QPTPETTSGEGEGGMRHDPKPQ--NDAEPIREEEAVPVVVQ 670

Query: 897  VAELPPLICICGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWYSLGGVPYRYNGGSHTSLG 1076
              +L P  C CG+ +  S +     H F+APD L  R  GWYS  GV Y+YNGG H SLG
Sbjct: 671  PEQLCPAYCACGIELERSELIATDLHAFRAPDNLGNRSGGWYSATGVGYKYNGGKHGSLG 730

Query: 1077 WPDWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESIFEVGSMVHTCNLDGYASF 1256
            WP W+  WM  NGIDSDYYNCCLYQ+Y++G  IGFH D+E+IFE G+ + TCN+ G A F
Sbjct: 731  WPKWLGVWMQLNGIDSDYYNCCLYQVYKEGARIGFHSDDEAIFEEGASILTCNITGSADF 790

Query: 1257 GIMCTNRATDYDLKPGTHFTMPQNFQVTHRHALLNCSANRASLTFRRMKXXXEERGGSTP 1436
               CT       L       MP+ FQ +H+H++  CS  RAS+TFRR+     E  G  P
Sbjct: 791  SFKCTVGGNSQFLDGPMSILMPEGFQESHKHSVSRCSKGRASVTFRRLAG---EMIGEQP 847

Query: 1437 VNEEPXXXXXXXXXXXXEQTPVENTVEEPERTEPTGSKEHGK 1562
            + E              EQ P     E  E  E +GS++ G+
Sbjct: 848  IEE----LRKVCVAEQREQGP-----ESSELPERSGSEQPGE 880



 Score = 67.8 bits (164), Expect = 1e-07
 Identities = 33/81 (40%), Positives = 47/81 (58%)
 Frame = +2

Query: 2   PKLIAAKLEVVKTVSLDDFVTFMAPYCFDVQLETVDFNYNSFFPLYDVAEADFGVALPEL 181
           P  +A K   V  VSLDDFV+ M PY F ++L  VD+NY+  + LY  AE D+GV   +L
Sbjct: 396 PHALAVKFSGVSEVSLDDFVSQMEPYTFQIKLADVDWNYHHRWDLYSKAEEDYGVDASKL 455

Query: 182 IDDTFTMGNVAALCDRITRPY 244
           ++++F    +    DR   PY
Sbjct: 456 LEESFVANRLYEFGDRARAPY 476


>ref|YP_001552317.1| replicase [Phlox virus B]
 gb|ABW05092.1| replicase [Phlox virus B]
          Length = 2051

 Score =  236 bits (602), Expect(2) = e-103
 Identities = 128/323 (39%), Positives = 183/323 (56%), Gaps = 2/323 (0%)
 Frame = +1

Query: 1645 VAGDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLEGAFAEDEAIICAV 1824
            V GDGNCFWY+LE A  L    +K +  +  +     QR+   Q   GA+AEDE I  A 
Sbjct: 941  VRGDGNCFWYALECALGLDPMEMKRLCKQVKYKDPTKQRKLNDQLQTGAYAEDEIISAAT 1000

Query: 1825 ATLKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCLLHAIAHALNRQ 2004
                  +I        +  Y+     +  +Y+ + N+HF ++EPKN+CL+ AIA +LNR+
Sbjct: 1001 HIFNFQLICLSAGDTGLVVYSPKREFSQVVYMHIENQHFNWVEPKNNCLVRAIAVSLNRK 1060

Query: 2005 FHEVLTVVERVLGSCMS--GETWVGQGIDVADLGFYFSLFDIRACVISGSSAATYNEEGR 2178
              EVL V+E   GSC+   G  W G+G+ + DL FYF  F I A V     A  +NE G 
Sbjct: 1061 TSEVLKVLEE--GSCVGSVGTLWRGEGVALEDLDFYFDRFGINAMVEFEGKAYNFNETGH 1118

Query: 2179 VVANFILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLTYRAELARAR 2358
            + A F L +GHI +  +N    + +++G    L+VS  S++ + A G+ + +R + +RA+
Sbjct: 1119 LPAAFTLKDGHIEFIGRNSPSTVPMMRGRVNTLTVSPNSLLIIKAAGSTIEFRPDYSRAK 1178

Query: 2359 VLADSLEAGSTGIISSKLFNQCPNLGAQIRTDGGFKDSQICCILGTFGAGKSSLFTEFTK 2538
             LAD    G TG+++SK+FN   +L A +  +      QI  +LGTFG+GKSSLF  F  
Sbjct: 1179 CLADCFHTGCTGVMNSKIFNNSEHLLAHVNINDRPNTVQINSVLGTFGSGKSSLFRRFFD 1238

Query: 2539 KNPGKGVFYVSPRKALAQEHESK 2607
             NPGKGVFYVSPR+ALA E   K
Sbjct: 1239 ANPGKGVFYVSPRRALADEFRQK 1261



 Score =  171 bits (434), Expect(2) = e-103
 Identities = 98/289 (33%), Positives = 142/289 (49%), Gaps = 6/289 (2%)
 Frame = +3

Query: 723  KKSAENKASGGATNAQHAHSPEETGTSGEHEIPSAPAGQGGGNCSPKKEECETPDFEEVA 902
            +K   +K SGG           +    GE E   + +   G +    +E  E     +  
Sbjct: 631  EKDRSSKDSGGTVE-------NDEDDKGEPEGVVSSSSDDGSDDKSSQEYIEV----DTK 679

Query: 903  ELPPLICICGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWYSLGGVPYRYNGGSHTSLGWP 1082
             +  + C CG+ + + T+     H FKA D+L+ R  GWYS  G PY Y GGSH S GWP
Sbjct: 680  VVRRMTCSCGVSMEIKTLLGSDMHAFKAKDRLKGRVGGWYSKDGTPYLYTGGSHISQGWP 739

Query: 1083 DWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESIFEVGSMVHTCNLDGYASFGI 1262
            DW++ WM  N +  D YN CLYQIYE+G ++G+H D+E IF+ G  +HTCNL G A F I
Sbjct: 740  DWLELWMQINKVP-DKYNSCLYQIYEEGASVGYHADDEPIFKKGEEIHTCNLSGKAVFEI 798

Query: 1263 MCTNRATDYDLKPGTHFTMPQNFQVTHRHALLNCSANRASLTFRRMKXXXEERGGSTPVN 1442
             C N A    L+    FTMP +FQ TH+H++   +  R S+TFR ++     +       
Sbjct: 799  KCRNGAGGEYLEGPMQFTMPMDFQGTHKHSVSGTTKGRESVTFRVLRACETAQEKEVDAE 858

Query: 1443 EEPXXXXXXXXXXXXEQTPVE-----NTVEEPERTEPTGSKEH-GKAGG 1571
            +EP            ++  +       + E+    EP GS +  G+ GG
Sbjct: 859  QEPESPPDTDEENELDKEKLSEDEAGGSEEKEVEAEPCGSSDQSGECGG 907



 Score = 73.6 bits (179), Expect = 2e-09
 Identities = 35/83 (42%), Positives = 52/83 (62%)
 Frame = +2

Query: 2   PKLIAAKLEVVKTVSLDDFVTFMAPYCFDVQLETVDFNYNSFFPLYDVAEADFGVALPEL 181
           PK +A + + V  VSLDDF++ M P+ F  +L  VD+NY   F  ++  EADFG+ +  L
Sbjct: 397 PKPLAQRFKTVAEVSLDDFISIMEPFSFRQELCDVDWNYFHTFBFFEFTEADFGIEMAAL 456

Query: 182 IDDTFTMGNVAALCDRITRPYIG 250
           +D  F  G VA+L +R ++PY G
Sbjct: 457 MDHKFXYGKVASLLERQSQPYSG 479


>gb|AKZ66614.1| replicase [Atractylodes mottle virus]
          Length = 2036

 Score =  289 bits (740), Expect = 3e-78
 Identities = 162/354 (45%), Positives = 215/354 (60%), Gaps = 1/354 (0%)
 Frame = +1

Query: 1615 LDRDNFILHSVAGDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLEG-A 1791
            L++ N+  H+V GDGNCFWYS+EKA   +    K   ++  F Q     +K +Q ++  A
Sbjct: 927  LEQINYRCHAVPGDGNCFWYSIEKALGFEAMQFKSKCSQVIFNQDGGAIKKLSQQMQPQA 986

Query: 1792 FAEDEAIICAVATLKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCL 1971
            FAEDEAI+ A    K  I I   +++  Y YT        +++ L  EHFE+IEP N CL
Sbjct: 987  FAEDEAIMAAAICSKHCIRILCPDEKLSYTYTPKTDIIGCVHMRLSGEHFEHIEPVNKCL 1046

Query: 1972 LHAIAHALNRQFHEVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISGSS 2151
            + AIA AL R    ++ V+E+          W G GID+ DL FYF+LFDI+A +  G  
Sbjct: 1047 VTAIAAALGRSETAIMNVLEQQEQGAYQANIWAGDGIDIQDLEFYFTLFDIQAVIFVGDQ 1106

Query: 2152 AATYNEEGRVVANFILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLT 2331
               YNE G V A F L +GHI++  KN  V++++LKGE + LSVS+ SV EL    T ++
Sbjct: 1107 TIKYNEGGHVPACFNLDDGHISFCRKNCPVNVEVLKGEASTLSVSDKSVFELATLCTQIS 1166

Query: 2332 YRAELARARVLADSLEAGSTGIISSKLFNQCPNLGAQIRTDGGFKDSQICCILGTFGAGK 2511
            Y A  ARA+VLADSLE+G TGI  SKLFN   NL  +   + G   + + C+ GTFG GK
Sbjct: 1167 YTASHARAKVLADSLESGCTGITLSKLFNDAHNLMPE--HEQGEVTATLNCLFGTFGCGK 1224

Query: 2512 SSLFTEFTKKNPGKGVFYVSPRKALAQEHESKCMSLGKASVGALGGATRKSGRK 2673
            S+LFT+FT+KNPGKGVFYVSPRKALA EHE KC+   +  V    G  RK  R+
Sbjct: 1225 STLFTKFTQKNPGKGVFYVSPRKALAVEHERKCIGGQRTDVNDAAG--RKKNRR 1276



 Score =  216 bits (551), Expect = 3e-54
 Identities = 124/298 (41%), Positives = 161/298 (54%), Gaps = 5/298 (1%)
 Frame = +3

Query: 537  YLGDKPDGKAMPRDFILQFAKIVGDVTGPVNRPKLTKRGCPPQFRYCRAKLGECDKCKGT 716
            +L  +PD  +  R     F  +V +V+    +  L KR  P    YC A+L   D+ +G+
Sbjct: 590  FLTAQPDHVSTFRSITQPFRFVVDEVSN-FCKSSLRKRRMPAP--YCFAELAGTDRQRGS 646

Query: 717  DGKKSAENKASGGATNAQHAHSPEETGTSGEHE-IPSAPAGQGGGNCS-PKKE--ECETP 884
              ++   +   GG   A           SG+H  + S P   G    + P  +  ECE P
Sbjct: 647  VIERKENDY--GGTQEA-----------SGKHTYVGSIPISIGHVPATIPVNDTIECELP 693

Query: 885  DFEEVAELPPLICICGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWYSL-GGVPYRYNGGS 1061
              + V ++    C C L I + TM LP  HNFK+PD L+ RR GWY+  G VPY Y+GG 
Sbjct: 694  TLQIVRQVGAFSCPCSLDIPIMTMPLPDNHNFKSPDLLKGRRGGWYTKRGNVPYTYHGGK 753

Query: 1062 HTSLGWPDWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESIFEVGSMVHTCNLD 1241
            H  LGWP W+ DWM CNGID DYY+C LYQ YEK G IG H D+E+IF+    VHTCNL 
Sbjct: 754  HQDLGWPRWLPDWMLCNGIDLDYYDCVLYQKYEKHGRIGLHSDDEAIFDPNGRVHTCNLS 813

Query: 1242 GYASFGIMCTNRATDYDLKPGTHFTMPQNFQVTHRHALLNCSANRASLTFRRMKXXXE 1415
            G   F I C    T   L+PGT FTMP   Q TH+HA++  SA R SLTFR++    E
Sbjct: 814  GSVEFTITCGKGFTSASLEPGTQFTMPAGMQQTHKHAVMGASAGRESLTFRKLAVKVE 871



 Score = 75.5 bits (184), Expect = 6e-10
 Identities = 39/99 (39%), Positives = 65/99 (65%)
 Frame = +2

Query: 2   PKLIAAKLEVVKTVSLDDFVTFMAPYCFDVQLETVDFNYNSFFPLYDVAEADFGVALPEL 181
           P +I+++L +V+TVSLDDFVT++AP+ F+VQL  V +++     ++D+AE    + +P+L
Sbjct: 397 PTIISSQLSLVQTVSLDDFVTYLAPFTFEVQLGEVHYDHKEILSMFDMAECAEEMDVPDL 456

Query: 182 IDDTFTMGNVAALCDRITRPYIGRHDRALVEKKETLLKI 298
           + D FT+G  A L DR+ +P +      +  K  TLLK+
Sbjct: 457 M-DRFTLGKSAMLADRVPQP-VSADLFNVFRKTSTLLKV 493


>ref|YP_001165301.1| replicase [Phlox virus S]
 gb|ABP37862.1| replicase [Phlox virus S]
          Length = 1990

 Score =  246 bits (627), Expect = 9e-64
 Identities = 131/330 (39%), Positives = 198/330 (60%)
 Frame = +1

Query: 1627 NFILHSVAGDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLEGAFAEDE 1806
            ++ L  V GDGNCFW+ L K++ L +  +KE   R  + +AE      +Q     FAE+E
Sbjct: 900  SYSLQDVPGDGNCFWHCLSKSSGLAFKELKEACRRIKYGEAERDEALSSQLKPRIFAEEE 959

Query: 1807 AIICAVATLKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCLLHAIA 1986
            AI+ A   L+  II+   E     E+T         Y+ + N HF+ +E KN+C++ A+A
Sbjct: 960  AILAAAVVLRAKIIVLSPEWPQQSEFTPIGSLEQVHYIEMANNHFQLVELKNACVVRAVA 1019

Query: 1987 HALNRQFHEVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISGSSAATYN 2166
             ALNR+  EVL V++             GQG+++A+L  YF+LF I A V++ +++   N
Sbjct: 1020 SALNRRCCEVLKVLDDAGDLGEDSPLLSGQGVELAELEHYFALFGIAALVVTHTTSHQLN 1079

Query: 2167 EEGRVVANFILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLTYRAEL 2346
             +G V A F L +GHI +  KN  VD  +LKGE  GL++++ S + +   G++L Y  + 
Sbjct: 1080 VQGAVPATFRLHDGHIDHVKKNCQVDNGLLKGENIGLTITSRSKLYVEQCGSLLPYAPDE 1139

Query: 2347 ARARVLADSLEAGSTGIISSKLFNQCPNLGAQIRTDGGFKDSQICCILGTFGAGKSSLFT 2526
            ARA+VLAD L AG+TG+++S LFN C NL   +  +    ++++ CI GTFG GKS++F 
Sbjct: 1140 ARAKVLADCLLAGNTGVLNSSLFNNCSNLMGSVDLNVE-HENEVACIFGTFGCGKSTVFK 1198

Query: 2527 EFTKKNPGKGVFYVSPRKALAQEHESKCMS 2616
            +F   NPGKGVFY+SPR+ALA E + K M+
Sbjct: 1199 KFFNLNPGKGVFYISPRRALADEFKGKVMA 1228



 Score =  187 bits (475), Expect = 9e-45
 Identities = 103/289 (35%), Positives = 146/289 (50%), Gaps = 1/289 (0%)
 Frame = +3

Query: 537  YLGDKPDGKAMPRDFILQFAKIVGDVTGPVNRPKLTKRGCPPQFRYCRAKLGECDKCKGT 716
            +L ++ +  +MPR F+  F++++ DVT    RP L +R           +       +G 
Sbjct: 589  FLTNQAETPSMPRAFMRAFSEVMSDVT---KRPTLLRR-----------RRAGTPSTQGV 634

Query: 717  DGKKSAENKASGGAT-NAQHAHSPEETGTSGEHEIPSAPAGQGGGNCSPKKEECETPDFE 893
            D +  A  K       NA     P+E+G                        E   P  E
Sbjct: 635  DREMPAPVKVEEPVEKNAPREVDPDESGN-----------------------EKSVPVEE 671

Query: 894  EVAELPPLICICGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWYSLGGVPYRYNGGSHTSL 1073
              +EL P  C CGL + +  +     H F+APD L  R+ GWYS  GV Y+YNGG H S 
Sbjct: 672  FSSELCPAFCKCGLDLELRALLGTDLHGFRAPDDLGNRKGGWYSTTGVDYKYNGGHHKSQ 731

Query: 1074 GWPDWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESIFEVGSMVHTCNLDGYAS 1253
            GWP W+  WM  N ID +YY+CCL+Q+Y + G IG+H D+E IFE G+ + TCNL G A 
Sbjct: 732  GWPKWLTVWMQLNEIDCNYYDCCLFQVYNENGRIGYHSDDEPIFETGASILTCNLKGQAD 791

Query: 1254 FGIMCTNRATDYDLKPGTHFTMPQNFQVTHRHALLNCSANRASLTFRRM 1400
            F   C   ++   L       MP+ FQ++H+HA+ NC+A R S+TFRR+
Sbjct: 792  FSFRCDEGSSMQVLNGPMSILMPEGFQLSHKHAVCNCTAARESVTFRRL 840


>ref|YP_001430021.1| replicase [Coleus vein necrosis virus]
 gb|ABS89245.1| replicase [Coleus vein necrosis virus]
          Length = 1977

 Score =  131 bits (329), Expect(2) = 2e-54
 Identities = 84/257 (32%), Positives = 117/257 (45%), Gaps = 9/257 (3%)
 Frame = +3

Query: 816  IPSAP------AGQGGGNCSPKKEECETPDFEEVAELPPLICICGLCIGVSTMRLPSGHN 977
            +P AP         G    S +  E    +F   A +    C CGL + +S++       
Sbjct: 637  LPPAPEPIKQEGSNGSVGVSNELAEDAIANFTPPAFIRNFSCSCGLEMPISSVVGGDFVY 696

Query: 978  FKAPDQLQKRRAGWYSL-GGVPYRYNGGSHTSLGWPDWIKDWMFCNGIDSDYYNCCLYQI 1154
            F  PD L  RRA W++  G   Y Y GG H S+GW + +   +  +G +   ++  L Q 
Sbjct: 697  FDLPDVLPGRRAAWFTKDGSTAYTYKGGKHASMGWDERLDLLLEIHGFEGSLFDSALVQE 756

Query: 1155 YEKGGAIGFHQDNESIFEVGSMVHTCNLDGYASFGIMCTNRATDYDLKPGTHFTMPQNFQ 1334
            YE+G  IGFH D+ESIF+VGS + T  L G + F I  +       L  G HFTMP  FQ
Sbjct: 757  YEQGARIGFHSDDESIFKVGSEILTMQLKGTSRFAIQGSRCYGSSALLGGCHFTMPAGFQ 816

Query: 1335 VTHRHALLNCSANRASLTFRRMKXXXEERGGSTPVNE--EPXXXXXXXXXXXXEQTPVEN 1508
             TH+H++  CS+ R S+TFR +K   +      P NE  EP            E+    +
Sbjct: 817  ETHKHSVAECSSGRTSITFRVLKGTEQPSAPLHPTNEKVEPGGGAVSSRLGAPEELSAFD 876

Query: 1509 TVEEPERTEPTGSKEHG 1559
                P R E  G    G
Sbjct: 877  YQIGPVRVENVGGPRAG 893



 Score =  113 bits (283), Expect(2) = 2e-54
 Identities = 85/325 (26%), Positives = 144/325 (44%), Gaps = 4/325 (1%)
 Frame = +1

Query: 1627 NFILHSVAGDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLEGAFAEDE 1806
            ++ L  V GDG+CF++++  +  L   +++            +   +    L G  A  +
Sbjct: 894  SYTLTDVPGDGSCFFHAVGLSFNLTGLALRRALLDAAPEIGGMFPAEAFAELRGGGAVSD 953

Query: 1807 AIICAVATLKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCLLHAIA 1986
              +C VA   K+ I  +                + I LL ++ H+  +  KN C L A+A
Sbjct: 954  VCVCYVAHALKSSIAVISHHEGCMRVFCPDNWENKIDLLHKDGHYNVVNYKNDCALLAVA 1013

Query: 1987 HALNRQFHEVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISGSSAATYN 2166
              L R   EV  VV +     +      G+G+ V  LG  F +F I+A V         N
Sbjct: 1014 ETLGRTKREVTEVVCKAKHGGLLRSMRTGEGLKVELLGELFKIFSIKALVKCNGQLHRLN 1073

Query: 2167 EEGRVVANFILSEGHITYS----SKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLTY 2334
             EG+++ ++ L +GHI        +  S  +K+++       V  + ++ + A  T L++
Sbjct: 1074 PEGKILGHYRLEDGHIQVDKGLIKQLGSAPVKVIEH-----PVHGSGMVLIAAVATQLSF 1128

Query: 2335 RAELARARVLADSLEAGSTGIISSKLFNQCPNLGAQIRTDGGFKDSQICCILGTFGAGKS 2514
                     LA+ L +G TG+ISS+LFN    L     +DG  K   +  I G FG GKS
Sbjct: 1129 EINAEIGDKLAECLVSGRTGVISSQLFNGRQKLTIPAGSDG--KSRAVNLITGVFGCGKS 1186

Query: 2515 SLFTEFTKKNPGKGVFYVSPRKALA 2589
            +L     +   G   ++V+PR++LA
Sbjct: 1187 TLMKRSFESGLGSKCYFVTPRRSLA 1211


>ref|YP_009224940.1| replicase polyprotein [Elderberry carlavirus C]
 gb|AIZ76625.1| replicase polyprotein [Elderberry carlavirus C]
          Length = 2005

 Score =  203 bits (516), Expect = 8e-50
 Identities = 128/333 (38%), Positives = 175/333 (52%)
 Frame = +1

Query: 1606 PTALDRDNFILHSVAGDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLE 1785
            P  +D   FI  SV GDGNCFWYSLE A  +     KE+         E  +R E Q  +
Sbjct: 907  PYRIDPGKFIRTSVLGDGNCFWYSLETAVGVSISRQKELTRTYATGPPEFLKRLENQLGD 966

Query: 1786 GAFAEDEAIICAVATLKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNS 1965
               AE+EAI CA   LK  I +Y   Q  ++ YT T  +  S +L L +EHFE   P N 
Sbjct: 967  HVMAEEEAISCAAEALKVEINVYDAAQHCLFTYTPT-SSYRSAWLYLEDEHFEPARPAND 1025

Query: 1966 CLLHAIAHALNRQFHEVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISG 2145
            CL+ AI+ A++R   +V+ V+E+ LG     E W G G+DV+ L   F LF I+A +++ 
Sbjct: 1026 CLIVAISEAVSRPSSDVMHVMEKNLGPDYITELWDGDGVDVSFLPTIFELFGIQALLLTD 1085

Query: 2146 SSAATYNEEGRVVANFILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTM 2325
                       V A F L   HIT+  K   V  K L  +    +V+  SV  L   GT+
Sbjct: 1086 EGEIRCGAADGVGACFQLRNSHITFLRKEKVVAHKALNTKANLTAVTEESVELLRGCGTL 1145

Query: 2326 LTYRAELARARVLADSLEAGSTGIISSKLFNQCPNLGAQIRTDGGFKDSQICCILGTFGA 2505
            +TY+ +  RA  LA +L  G TG ISS L+N   +L +++          +  ILGTFGA
Sbjct: 1146 ITYQPDQGRALRLAKNLHGGQTGAISSGLYNDKSDL-SELVVGSSQAARALNVILGTFGA 1204

Query: 2506 GKSSLFTEFTKKNPGKGVFYVSPRKALAQEHES 2604
            GKS+LF +F   N G+ + YVSPR+ LA+E  S
Sbjct: 1205 GKSTLFKKFMHANKGRCITYVSPRRGLAEEFAS 1237



 Score =  145 bits (365), Expect = 2e-31
 Identities = 81/199 (40%), Positives = 102/199 (51%)
 Frame = +3

Query: 849  NCSPKKEECETPDFEEVAELPPLICICGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWYSL 1028
            N +P+     T  FE +   P L C C   +  + +      +   PDQ + R   WYS+
Sbjct: 638  NLTPQAPPTSTV-FEVIQSGPHLTCSCRTAMPTTPLPYAGLIHDHFPDQKKNRECAWYSV 696

Query: 1029 GGVPYRYNGGSHTSLGWPDWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESIFE 1208
              V Y YNGGSH SLGWP WI  W   N +D   Y+C L Q Y KG  IG H D+ESIFE
Sbjct: 697  VPVHYEYNGGSHNSLGWPSWIPKWAEVNDLDISGYDCMLAQKYRKGAGIGLHADDESIFE 756

Query: 1209 VGSMVHTCNLDGYASFGIMCTNRATDYDLKPGTHFTMPQNFQVTHRHALLNCSANRASLT 1388
              S + T N+ G A F +          L+ G  FTMP  FQ +H+HA+ +CSA R S T
Sbjct: 757  PHSPILTTNICGTAVFSVAGKCCHGSLLLEGGVSFTMPAGFQESHKHAVADCSAGRISFT 816

Query: 1389 FRRMKXXXEERGGSTPVNE 1445
            FRR+       G   PVNE
Sbjct: 817  FRRL-----ASGARGPVNE 830


>dbj|BAU20378.1| replicase [Daphne virus S]
          Length = 2004

 Score =  194 bits (494), Expect = 4e-47
 Identities = 123/347 (35%), Positives = 177/347 (51%), Gaps = 3/347 (0%)
 Frame = +1

Query: 1642 SVAGDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLEGAFAEDEAIICA 1821
            +V GDG+CFW+ + +  + +   +KE A +       L    + Q  +  +A+DEAI  A
Sbjct: 912  NVPGDGDCFWHCISRVMSNEMQIMKEKAGKVNLGSKSLNEALQFQMGDQVYAQDEAIAAA 971

Query: 1822 VATLKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCLLHAIAHALNR 2001
             A     I +Y   +  +  +T T G    I L+   +HF  IEP N C+  AIA A  R
Sbjct: 972  SACFSARINVYQPTECVLTRFTPTNGVKHEINLINEFDHFTIIEPANCCVPRAIAAAYKR 1031

Query: 2002 QFHEVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISGSSAATYNEEGRV 2181
               EVL+++       +S E W G+G++   +   F  FDI A VI    +  +NE GRV
Sbjct: 1032 PLSEVLSIIHENCDESVSAEIWNGEGVNEMHMLLLFECFDICAEVIQDGVSTMFNETGRV 1091

Query: 2182 VANFILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLTYRAELARARV 2361
              +F L E H+T+  K        L+ E+  LS+   S   L    T LTY+A   RA+V
Sbjct: 1092 RFSFHLEEKHLTFMEKTKIASAPSLRYERPELSLPLASQRALAQIATKLTYKATELRAKV 1151

Query: 2362 LADSLEAGSTGIISSKLFNQCPNLGAQIRTDGGFKDSQICCILGTFGAGKSSLFTEFTKK 2541
            L+ SL  G+TG+ISS LFN   NL     T    K   + C++GTFGAGKS+    F K 
Sbjct: 1152 LSRSLFEGTTGVISSNLFNGRLNLMQHGETLPPEKARDVFCLMGTFGAGKSTHLANFFKM 1211

Query: 2542 NPGKGVFYVSPRKALAQEHESKCMSLGKASVG---ALGGATRKSGRK 2673
            N G+ + YVSPRK LA++ E K + L K   G    + G  +K G++
Sbjct: 1212 NKGRMITYVSPRKVLAEDFE-KRIGLEKREKGLGREIAGQRKKLGQE 1257



 Score =  147 bits (372), Expect = 3e-32
 Identities = 71/168 (42%), Positives = 96/168 (57%)
 Frame = +3

Query: 894  EVAELPPLICICGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWYSLGGVPYRYNGGSHTSL 1073
            EV     + C CG+ + + +      H F+APDQL  RRAGWYS  G  Y Y G SH +L
Sbjct: 662  EVKVKKQVSCSCGVTMELRSPVETLDHLFQAPDQLLGRRAGWYSRDGHNYNYTGASHKNL 721

Query: 1074 GWPDWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESIFEVGSMVHTCNLDGYAS 1253
            GW  W+ +W+    +D +YYN CLYQ+YE    + +H D+E +FE G  + T NL G A 
Sbjct: 722  GWATWMDEWLRVLDLDPEYYNSCLYQVYEADAILNWHSDDEGLFENGGKIVTVNLSGSAI 781

Query: 1254 FGIMCTNRATDYDLKPGTHFTMPQNFQVTHRHALLNCSANRASLTFRR 1397
            F + C+      +L     F MP +FQ TH+H L N S+ R S+TFRR
Sbjct: 782  FHVKCSTGCRTNELTGFGVFEMPTHFQSTHKHKLSNTSSGRESVTFRR 829


>ref|YP_006297586.1| unnamed protein product [American hop latent virus]
 gb|AFI61519.1| putative viral replicase [American hop latent virus]
          Length = 1977

 Score =  191 bits (485), Expect = 5e-46
 Identities = 118/333 (35%), Positives = 169/333 (50%)
 Frame = +1

Query: 1606 PTALDRDNFILHSVAGDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLE 1785
            P  L  +NF    V GDGNCFWY+LE  T +    +KE A       +E   R   Q  +
Sbjct: 883  PAELSCNNFKFVKVNGDGNCFWYTLEHFTGVNQRRIKEAARTGASYDSEFSVRLAEQLQD 942

Query: 1786 GAFAEDEAIICAVATLKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNS 1965
               AE+EAI  A   L+  ++IY  E++ +    G      + ++ L NEHF  + P N 
Sbjct: 943  RVMAEEEAISAASYALRARLVIYDFEKQCIVS-VGNEVFKQTYFIGLSNEHFSPVLPVND 1001

Query: 1966 CLLHAIAHALNRQFHEVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISG 2145
            CL  AIA  L+R+  +V+ V+ + +      + W G+G+DV+ L   F +F+I A V   
Sbjct: 1002 CLAVAIAAHLDRKVEDVINVLSKQMDEASFMDLWCGKGVDVSFLPLIFEMFNIEALVTGK 1061

Query: 2146 SSAATYNEEGRVVANFILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTM 2325
                  N        + + E HITY  +      ++L        V+  S+  L  +GTM
Sbjct: 1062 GEDILINAGAEFKGVYDIVEEHITYLPERKVPHHQVLNTNVGTKGVNKGSLQLLRGSGTM 1121

Query: 2326 LTYRAELARARVLADSLEAGSTGIISSKLFNQCPNLGAQIRTDGGFKDSQICCILGTFGA 2505
            L Y  E++RA  LA +L  G TG ISS LFN   +L   +  +G F    +C +LGTFGA
Sbjct: 1122 LDYAPEMSRALRLAKNLFQGRTGAISSGLFNDKASLEPDVH-NGDFSSRAVCVVLGTFGA 1180

Query: 2506 GKSSLFTEFTKKNPGKGVFYVSPRKALAQEHES 2604
            GKS+LF +F + N GK V YVSPR+ LA +  S
Sbjct: 1181 GKSTLFKKFMQANKGKCVHYVSPRRGLADDFAS 1213



 Score =  141 bits (355), Expect = 3e-30
 Identities = 69/164 (42%), Positives = 93/164 (56%)
 Frame = +3

Query: 912  PLICICGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWYSLGGVPYRYNGGSHTSLGWPDWI 1091
            PL+C C   +   T+      +   PD+L+ R A WY+  G  YRY+  +H  LGWP+WI
Sbjct: 647  PLVCGCNEDLSYRTLPHAGLIHEYFPDKLRNREAAWYAKNGTCYRYSDITHQCLGWPNWI 706

Query: 1092 KDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESIFEVGSMVHTCNLDGYASFGIMCT 1271
            + W   N +D   Y+C L Q Y +GGAIGFH D+E IFE G  + T N+ G A F +   
Sbjct: 707  EKWAEVNDLDISGYDCLLAQRYREGGAIGFHADDECIFETGGSILTVNIKGRALFSLAGN 766

Query: 1272 NRATDYDLKPGTHFTMPQNFQVTHRHALLNCSANRASLTFRRMK 1403
                 ++L  G  FTMP  FQ TH+HA+  CS  R S TFR++K
Sbjct: 767  VCRKVWELNDGECFTMPCGFQQTHKHAVSGCSEGRISFTFRKLK 810


>gb|ALJ56053.1| putative viral replicase [American hop latent virus]
          Length = 1977

 Score =  191 bits (484), Expect = 7e-46
 Identities = 118/333 (35%), Positives = 168/333 (50%)
 Frame = +1

Query: 1606 PTALDRDNFILHSVAGDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLE 1785
            P  L  +NF    V GDGNCFWY+LE  T +    +KE A       +E   R   Q  +
Sbjct: 883  PAELSCNNFKFVKVNGDGNCFWYTLEHFTGVNHRRIKEAARTGASYDSEFNVRLAEQLQD 942

Query: 1786 GAFAEDEAIICAVATLKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNS 1965
               AE+EAI  A   LK  ++IY  E++ +    G      + ++ L NEHF  + P N 
Sbjct: 943  RVMAEEEAISAASYALKARLVIYDFEKQCIVS-VGNEVFKQTYFIGLNNEHFSPVLPVND 1001

Query: 1966 CLLHAIAHALNRQFHEVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISG 2145
            CL  AIA  L+R+  +V+ V+ + +      + W G+G+DV+ L   F +F+I A V   
Sbjct: 1002 CLAVAIAAHLDRKVEDVINVLSKQMDEASFMDLWCGKGVDVSFLPLIFEMFNIEALVTGK 1061

Query: 2146 SSAATYNEEGRVVANFILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTM 2325
                  N        + +   HITY  +      ++L        V+  S+  L  +GTM
Sbjct: 1062 GEDILINAGAEFKGVYDIVGEHITYLPERKVPHHQVLNTNVGSKGVNKGSLQLLRGSGTM 1121

Query: 2326 LTYRAELARARVLADSLEAGSTGIISSKLFNQCPNLGAQIRTDGGFKDSQICCILGTFGA 2505
            L Y  E++RA  LA +L  G TG ISS LFN   +L   +  +G F    +C +LGTFGA
Sbjct: 1122 LDYAPEMSRALRLAKNLFQGRTGAISSGLFNDKASLEPDVH-NGDFSSRAVCVVLGTFGA 1180

Query: 2506 GKSSLFTEFTKKNPGKGVFYVSPRKALAQEHES 2604
            GKS+LF +F + N GK V YVSPR+ LA +  S
Sbjct: 1181 GKSTLFKKFMQANKGKCVHYVSPRRGLADDFAS 1213



 Score =  142 bits (358), Expect = 1e-30
 Identities = 73/174 (41%), Positives = 96/174 (55%)
 Frame = +3

Query: 882  PDFEEVAELPPLICICGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWYSLGGVPYRYNGGS 1061
            P  EEV    PL+C C   +   T+      +   PD+L+ R A WY+  G  YRY+  +
Sbjct: 638  PAEEEVVH-EPLVCGCSENLSYRTLPHAGLIHEYFPDKLRNREAAWYAKNGTCYRYSDIT 696

Query: 1062 HTSLGWPDWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESIFEVGSMVHTCNLD 1241
            H  LGWP WI+ W   N +D   Y+C L Q Y  GGAIGFH D+E IFE G  + T N+ 
Sbjct: 697  HQCLGWPSWIEKWAEVNDLDISGYDCLLAQRYRGGGAIGFHADDECIFETGGSILTVNIK 756

Query: 1242 GYASFGIMCTNRATDYDLKPGTHFTMPQNFQVTHRHALLNCSANRASLTFRRMK 1403
            G A F +        ++L  G  FTMP+ FQ TH+HA+  CS  R S TFR++K
Sbjct: 757  GRALFSLAGNVCRKVWELNDGECFTMPRGFQKTHKHAVSGCSEGRISFTFRKLK 810


>ref|YP_009224952.1| replicase polyprotein [Elderberry carlavirus E]
 gb|AIZ76637.2| replicase polyprotein [Elderberry carlavirus E]
          Length = 1958

 Score =  190 bits (483), Expect = 9e-46
 Identities = 128/348 (36%), Positives = 180/348 (51%), Gaps = 4/348 (1%)
 Frame = +1

Query: 1606 PTALDRDNFILHSVAGDGNCFWYSLEKATALQWYSVKE-IAARCTFTQAELQRRKETQFL 1782
            P  +  +NF      GDGNCFWY+LE    ++   +KE I  R +  Q   + R   Q  
Sbjct: 865  PRPILPENFTRTKTVGDGNCFWYALEHFLGVRMGRLKEKIRGRASGPQ-NYKERLWAQLT 923

Query: 1783 EGAFAEDEAIICAVATLKKNIIIYVEEQRAVYEYTGTCGNAD---SIYLLLRNEHFEYIE 1953
            +G  AE+EAI  A +     I I+ E Q+  + Y    GN D   S +L L NEHFE   
Sbjct: 924  DGTMAEEEAISSAASVFSLKIHIFDEAQQCAFIY----GNLDATASAFLYLANEHFEPAM 979

Query: 1954 PKNSCLLHAIAHALNRQFHEVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRAC 2133
            P N CL+ A++  ++RQ  ++L  +E+ +      E W  +G+D+  L   F LF+I A 
Sbjct: 980  PSNDCLIIALSSTIDRQPCDILHALEKTIEPESFLELWCNEGVDIVLLPGIFELFEINAL 1039

Query: 2134 VISGSSAATYNEEGRVVANFILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNA 2313
            +I+ S     N +G   A + +S GHI +  K       +L        VS  SV+ L++
Sbjct: 1040 LIADSKEIFINPDGEYKAVYQISNGHIEHMKKRKMPVHPVLNTNVGCTGVSEESVLALSS 1099

Query: 2314 NGTMLTYRAELARARVLADSLEAGSTGIISSKLFNQCPNLGAQIRTDGGFKDSQICCILG 2493
             GT L Y     RA+ LA +L  G TG ISS+LFN  P+L   + + G      +  ILG
Sbjct: 1100 CGTTLDYAPSELRAKRLAINLHQGRTGAISSELFNDKPSLEPLV-SAGNTGSRTLHIILG 1158

Query: 2494 TFGAGKSSLFTEFTKKNPGKGVFYVSPRKALAQEHESKCMSLGKASVG 2637
            TFGAGKS+LF +F + N G+ V YVSPR+ LA E  +  M L K S G
Sbjct: 1159 TFGAGKSTLFKKFMQANKGRCVTYVSPRRGLADEFAAD-MELHKRSKG 1205



 Score =  130 bits (327), Expect = 6e-27
 Identities = 72/195 (36%), Positives = 97/195 (49%)
 Frame = +3

Query: 819  PSAPAGQGGGNCSPKKEECETPDFEEVAELPPLICICGLCIGVSTMRLPSGHNFKAPDQL 998
            P AP      +  P   E ET    +       +C CG+ +    +   +  +   PDQL
Sbjct: 633  PLAPHESQPISSKPPPVETETQAASQ------FLCSCGVDLKAGILPRANLVHDHFPDQL 686

Query: 999  QKRRAGWYSLGGVPYRYNGGSHTSLGWPDWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIG 1178
              R A WYS  G PY Y G +H SLGWPDWI  W   N +D  +Y+C L Q Y     I 
Sbjct: 687  NGRAAAWYSKDGTPYAYTGFTHESLGWPDWIDKWAEINNLDIAHYDCLLAQKYTHNSGIP 746

Query: 1179 FHQDNESIFEVGSMVHTCNLDGYASFGIMCTNRATDYDLKPGTHFTMPQNFQVTHRHALL 1358
             H D+E IF+  + + T N  G A+F ++  N         G+ FTMP  FQ TH+H + 
Sbjct: 747  LHADDEPIFD-RTPILTVNAVGNANFTVIGRNCTASLHCTSGSFFTMPPGFQSTHKHKVD 805

Query: 1359 NCSANRASLTFRRMK 1403
             C+A R SLTFR++K
Sbjct: 806  RCTAGRISLTFRKLK 820


>ref|YP_595727.1| replicase [Daphne virus S]
 emb|CAF04326.1| replicase [Daphne virus S]
          Length = 2004

 Score =  188 bits (478), Expect = 4e-45
 Identities = 111/321 (34%), Positives = 163/321 (50%)
 Frame = +1

Query: 1645 VAGDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLEGAFAEDEAIICAV 1824
            V GDG+CFW+ + +  + +    KE A R       L    + Q  E  +A+DEAI    
Sbjct: 913  VPGDGDCFWHCVSRVMSNELRLTKEKAGRVDLGSESLNDALQHQMGEQVYAQDEAIAATS 972

Query: 1825 ATLKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCLLHAIAHALNRQ 2004
                  I +Y   +  + ++  T G    I L+   +HF  +EP N C+  AIA A  R 
Sbjct: 973  VCFSARINVYQPAECVLTKFIPTSGVKHEINLINEFDHFSIVEPANCCVPRAIAAAYKRS 1032

Query: 2005 FHEVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISGSSAATYNEEGRVV 2184
              E+L V+       +S E W G+G++   +   F  FDIRA V+    +  +NE GRV 
Sbjct: 1033 LSEILAVIREHCDESVSSEIWNGEGVNEMHMLLLFECFDIRADVVQQGVSTVFNEAGRVR 1092

Query: 2185 ANFILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLTYRAELARARVL 2364
             +F L + H+T+  K+       L+ E+  LS+   S   L    + LTY+A   RA+VL
Sbjct: 1093 FSFHLEDKHLTFLEKDKLASAPSLRYERPELSLPLASQHVLAQIASKLTYKATELRAKVL 1152

Query: 2365 ADSLEAGSTGIISSKLFNQCPNLGAQIRTDGGFKDSQICCILGTFGAGKSSLFTEFTKKN 2544
            + SL  G+TG+ISS LFN   +L     T    K   + C++GTFGAGKS+    F K N
Sbjct: 1153 SRSLFEGTTGVISSNLFNGRLDLMQHGETPPKEKSRDVYCLMGTFGAGKSTHLANFFKMN 1212

Query: 2545 PGKGVFYVSPRKALAQEHESK 2607
             G+ + YVSPRK LA++ E +
Sbjct: 1213 KGRMITYVSPRKVLAEDFEKR 1233



 Score =  150 bits (378), Expect = 5e-33
 Identities = 74/176 (42%), Positives = 96/176 (54%)
 Frame = +3

Query: 921  CICGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWYSLGGVPYRYNGGSHTSLGWPDWIKDW 1100
            C CG+ + + +      H F+APD L+ RRAGWYS  G  Y Y G SH SLGW  W+ +W
Sbjct: 671  CACGVTMELKSPVETLDHLFQAPDPLRGRRAGWYSRDGHDYNYTGASHKSLGWAAWMDEW 730

Query: 1101 MFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESIFEVGSMVHTCNLDGYASFGIMCTNRA 1280
            +    +D +YYN CLYQ+YE    + +H D+ES+FE G  + T NL G A F + C N  
Sbjct: 731  LKVLDLDPNYYNSCLYQVYEADATLNWHSDDESLFEKGGRIATVNLSGSAVFHVKCMNGC 790

Query: 1281 TDYDLKPGTHFTMPQNFQVTHRHALLNCSANRASLTFRRMKXXXEERGGSTPVNEE 1448
               +L     F MP +FQ TH+H L N S  R S+TFRR        G     N E
Sbjct: 791  RANELVGFGVFEMPADFQSTHKHKLSNPSNGRESVTFRRTAQQSVTTGSENFSNHE 846


>gb|AVN98095.1| replicase [Chrysanthemum virus R]
          Length = 2075

 Score =  188 bits (477), Expect = 5e-45
 Identities = 112/317 (35%), Positives = 161/317 (50%)
 Frame = +1

Query: 1651 GDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLEGAFAEDEAIICAVAT 1830
            G GNCFW  L        +  K++A       A       +   EG +A DEAI CA + 
Sbjct: 984  GGGNCFWLCLATEMGCDPFRGKKLALEYDLGSAGANESARSCAGEGVYAVDEAIACAASV 1043

Query: 1831 LKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCLLHAIAHALNRQFH 2010
             +  I IY  E   +  +    G    ++L L  EHF  +   N C++ AI+ ALNR+  
Sbjct: 1044 FRVVIKIYQPELNVMTTFEPAKGER-VLHLELEGEHFRLMRIINGCVIRAISSALNRREG 1102

Query: 2011 EVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISGSSAATYNEEGRVVAN 2190
            EV+ V+E      M  + W G G+D++       LF I+A +  GS    YN EGR  A+
Sbjct: 1103 EVMHVIEENCDPTMITDLWKGAGVDLSVFHSLLELFSIKALIFEGSREVLYNSEGRFEAS 1162

Query: 2191 FILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLTYRAELARARVLAD 2370
            F +   HI +  +       + +       V   S+  LN  GT+L Y++ LARA+ LAD
Sbjct: 1163 FEIKGDHIEHVLRKKGACNVLFEECGKTFEVKAESLELLNRAGTLLKYKSTLARAKRLAD 1222

Query: 2371 SLEAGSTGIISSKLFNQCPNLGAQIRTDGGFKDSQICCILGTFGAGKSSLFTEFTKKNPG 2550
            SL +G+TG++SS LFN+ PNL  Q R      D  +  ++GTFG+GKS++   F K N G
Sbjct: 1223 SLCSGTTGVVSSSLFNKKPNLAGQFREKTESLDRDVLAVIGTFGSGKSTILKNFFKINLG 1282

Query: 2551 KGVFYVSPRKALAQEHE 2601
            + V YVSPR+AL  E +
Sbjct: 1283 RKVLYVSPRRALLNEFQ 1299



 Score =  160 bits (406), Expect = 2e-36
 Identities = 101/298 (33%), Positives = 139/298 (46%), Gaps = 30/298 (10%)
 Frame = +3

Query: 753  GATNAQHAHSPEETGTSGE----HEIPSAPAGQGGGNCSPKKEECETPDFEEVAELPP-- 914
            G TN +   +   T T+G     +E  +    +  G  +P + E   P   +  E+PP  
Sbjct: 641  GGTNEEPIRADRSTETAGGGSQFNEARTDQDNKTNGGDAPNEGEWTPPQGSKYEEMPPPP 700

Query: 915  ------------LICICGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWYSLGGVPYRYNGG 1058
                        + C C L + +ST      H F  PD+L+ R AG+YS     Y YNGG
Sbjct: 701  QRQGSQREEQRAIKCTCNLVLPISTDEATRHHKFLTPDRLKNRCAGFYSKNKEGYTYNGG 760

Query: 1059 SHTSLGWPDWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESIFEVGSMVHTCNL 1238
            SH SLGWP WI  WM   GI  ++YNCCL Q Y++G  +G H D+E  F  GS V T N+
Sbjct: 761  SHQSLGWPGWINAWMRLIGI-PEFYNCCLVQRYDEGAKLGLHSDDEECFVQGSPVFTVNI 819

Query: 1239 DGYASFGIMCTN----RATDYDLKPGTHFTMPQNFQVTHRHALLNCSANRASLTFRRMK- 1403
            +G+A+F I C N    R T   + PG  F MP  FQ TH+H +      R S+TFR MK 
Sbjct: 820  EGHATFLIACKNSPERRVTRSIVGPGDLFEMPGGFQETHKHGVCETEKGRLSVTFRVMKK 879

Query: 1404 ----XXXEERGGSTPVNEEPXXXXXXXXXXXXEQTPVENTVEEPERTEPTG---SKEH 1556
                   ++ G S                   E+ P +  V+E E  + +G   S+EH
Sbjct: 880  NPHSGEEKDHGASEGHQNGTENVNDQSESETHEEKPQQEGVKERESVQESGEGISEEH 937


>emb|CAK54345.1| polyprotein, partial [Chrysanthemum virus B]
          Length = 2075

 Score =  187 bits (475), Expect = 9e-45
 Identities = 116/318 (36%), Positives = 161/318 (50%), Gaps = 1/318 (0%)
 Frame = +1

Query: 1651 GDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLEGAFAEDEAIICAVAT 1830
            G+GNCFW  L     L  +  K++A       A       +   EG +A DEAI CA + 
Sbjct: 983  GNGNCFWLCLANELGLCPFRGKKLALEYDLGSAGANETARSCAGEGVYAVDEAIACAASV 1042

Query: 1831 LKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCLLHAIAHALNRQFH 2010
                I IY  E   +  +  T G    IYL L  EHF  +   N C++ A+A ALNR+  
Sbjct: 1043 FSVAIKIYQPELSVMTVFEPTKGER-VIYLELSGEHFRLMRIINGCVVKAMASALNRKES 1101

Query: 2011 EVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISGSSAATYNEEGRVVAN 2190
            EV+ V+E      M    W G+G+D+        LF I+A +  GS    YN EGR  A+
Sbjct: 1102 EVMHVIEENCDPMMVTSLWNGEGVDLGVFHSLLELFSIKALIFEGSREVLYNREGRFEAS 1161

Query: 2191 FILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLTYRAELARARVLAD 2370
            F +   HI +  +       + +       V   S+  LN  GT+L Y++ LARAR LAD
Sbjct: 1162 FEIKGDHIEHVHRKKGACNALFEECGKTHEVKAESLELLNRAGTLLNYQSTLARARRLAD 1221

Query: 2371 SLEAGSTGIISSKLFNQCPNL-GAQIRTDGGFKDSQICCILGTFGAGKSSLFTEFTKKNP 2547
            SL +G+TG++SS LFN+ PNL   Q R    F    +  ++GT G+GKS++   F K N 
Sbjct: 1222 SLCSGTTGVVSSSLFNKKPNLFPVQFRNTSEFLSRDVLAVIGTLGSGKSTILKNFFKINL 1281

Query: 2548 GKGVFYVSPRKALAQEHE 2601
            G+ V YVSPR+AL  E +
Sbjct: 1282 GRKVLYVSPRRALLNEFQ 1299



 Score =  160 bits (404), Expect = 4e-36
 Identities = 107/362 (29%), Positives = 159/362 (43%), Gaps = 19/362 (5%)
 Frame = +3

Query: 537  YLGDKPDGKAMPRDFILQFAKIVGDVTGPVNRPKLTKRGCPPQFRYCRAKLGECDKCKGT 716
            +L  +PDG    +  +  ++K++ +VT               QF   +       +C+ +
Sbjct: 590  FLTAQPDGHGTYKSLMHPWSKVMHEVTNH-------------QFHSSKTSNYSWLRCERS 636

Query: 717  DGKKSAENKASGGATNAQHAHSPEETGTSGEHEIPSAPAGQGG-------------GNCS 857
              K +      GGA + +      E+  S   E P +  G+G              G C 
Sbjct: 637  TDKPTETCGVHGGARSGRVVGRKAESKGSAGGEDPKSDQGEGKDQGEERPVDEAAHGGCP 696

Query: 858  PKKEECETPDFEEVAELPPLICICGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWYSLGGV 1037
            P+ +        E      + C C + + +        H F+ PD+L+ R AG+YS  GV
Sbjct: 697  PQPQAYSN----EEKGAHTVQCPCSVVLSIRNDGATRLHKFQTPDRLKNRYAGFYSKNGV 752

Query: 1038 PYRYNGGSHTSLGWPDWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESIFEVGS 1217
             Y YNGG H SL WP WI  WM   GI  + YNCCL Q Y++   IG H D+E  F  G 
Sbjct: 753  GYSYNGGEHQSLNWPGWISVWMRLVGI-PEIYNCCLVQRYDENAKIGMHSDDEECFVTGG 811

Query: 1218 MVHTCNLDGYASFGIMC----TNRATDYDLKPGTHFTMPQNFQVTHRHALLNCSANRASL 1385
             ++T N++G A+F   C    T   T ++L PG  F MP  FQ TH+HA+   S +R S+
Sbjct: 812  PIYTVNIEGRATFMTTCKEGKTKEITSFELGPGDLFEMPGGFQETHKHAVFETSKDRLSV 871

Query: 1386 TFRRMKXXXEERGGSTPVNEEPXXXXXXXXXXXXEQTPVENTVEEPERTEPTGSK--EHG 1559
            TFR MK   ++       + E             E+T   NT +E    E  G++  EHG
Sbjct: 872  TFRLMKQICQDE----QKDHEETDTSGGKKAGEAEETEQPNTEKENPDEEGAGNEEGEHG 927

Query: 1560 KA 1565
             +
Sbjct: 928  SS 929


>gb|AEI55831.1| RNA dependent RNA polymerase [Potato virus H]
          Length = 1949

 Score =  186 bits (471), Expect = 3e-44
 Identities = 126/351 (35%), Positives = 181/351 (51%), Gaps = 5/351 (1%)
 Frame = +1

Query: 1633 ILHSVAGDGNCFWYSLEKATALQWYSVKEIAARCTFTQA-ELQRRKETQFLEGAFAEDEA 1809
            +L  V GDG+C+W+ L +   +    +K++      + A +L      Q  EG  A DE 
Sbjct: 860  VLRDVPGDGDCYWHCLSEVLDMSAKVIKKLCCERLLSVAPKLSEEIMRQVEEGESACDEL 919

Query: 1810 IICAVATLKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCLLHAIAH 1989
            I  + A     +II+ E++     + G       I LLL+ EHF+ I P+N+C+L AI  
Sbjct: 920  IAVSAALFGLCVIIHNEQRGDERTFKGQSATIQ-IKLLLKGEHFQLILPRNNCVLRAIGQ 978

Query: 1990 ALNRQFHEVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISGSSAATYNE 2169
            AL R   EVL VV       + G+ W G+G+ + +L   FS FDIRA V  G+     NE
Sbjct: 979  ALKRSEAEVLKVVNVKCTEALVGKIWEGEGVGLDELELVFSCFDIRAIVHRGNEQFVLNE 1038

Query: 2170 EGRVVANFILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLTYRAELA 2349
            +G+VV +F  ++ H+ Y  +      ++L G +    V   +V EL   GT L Y     
Sbjct: 1039 QGKVVKSFSATDDHLEYLERKRIPSAELLMGHKKCREVDERAVNELAMAGTSLVYEISTT 1098

Query: 2350 RARVLADSLEAGSTGIISSKLFNQCPNL---GAQIRTDGGFKDSQICCILGTFGAGKSSL 2520
            RARVLA+ L  G TG  SS+LF+   +L   G  +      + +++  I+GTFGAGKS+L
Sbjct: 1099 RARVLAECLLEGLTGAFSSELFDGKRSLMPTGTDVEVP---RCARVHVIMGTFGAGKSTL 1155

Query: 2521 FTEFTKKNPGKGVFYVSPRKALAQEHESKCMSLGKA-SVGALGGATRKSGR 2670
            F +F  K  G+ V YVSPRK LA   +S  M LG+    G L GA   S R
Sbjct: 1156 FKKFMGKCSGRKVTYVSPRKVLADSFKS-MMGLGRTKGEGMLVGAENWSVR 1205


>ref|YP_006522434.1| RNA-dependent RNA polymerase [Potato virus H]
 gb|AFN61353.1| RNA-dependent RNA polymerase [Potato virus H]
          Length = 1949

 Score =  186 bits (471), Expect = 3e-44
 Identities = 124/348 (35%), Positives = 180/348 (51%), Gaps = 2/348 (0%)
 Frame = +1

Query: 1633 ILHSVAGDGNCFWYSLEKATALQWYSVKEIAARCTFTQA-ELQRRKETQFLEGAFAEDEA 1809
            +L  V GDG+C+W+ L +   +    +K++      + A +L      Q  +G  A DE 
Sbjct: 860  VLRDVPGDGDCYWHCLAEVLDMSAKVIKKLCCERLLSVAPKLSEEVMRQVEDGESACDEL 919

Query: 1810 IICAVATLKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCLLHAIAH 1989
            I  + A     +II+ E++     + G       I LLL+ EHF+ I P+N+C+L AI  
Sbjct: 920  IAISAALFGLCVIIHNEQRGDERTFKGHSATIQ-IKLLLKGEHFQLILPRNNCVLRAIGQ 978

Query: 1990 ALNRQFHEVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISGSSAATYNE 2169
            AL R   EVL VV       + G+ W G+G+ + +L   FS FDIRA V  G+     NE
Sbjct: 979  ALKRSEVEVLKVVNVKCTEALVGKIWEGEGVGLDELDLVFSCFDIRAIVHRGNEQFVLNE 1038

Query: 2170 EGRVVANFILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLTYRAELA 2349
            +G+VV +F  ++ H+ Y  +  +   ++L G +    V   +V EL   GT L Y     
Sbjct: 1039 QGKVVKSFSATDDHLEYLERKRTPSAELLMGHKKCREVDQRAVNELAMAGTSLVYEISAT 1098

Query: 2350 RARVLADSLEAGSTGIISSKLFNQCPNLGAQIRTDGGFKDSQICCILGTFGAGKSSLFTE 2529
            RARVLA+ L  G TG  SS+LF+   +L          + +++  I+GTFGAGKS+LF +
Sbjct: 1099 RARVLAECLLEGLTGAFSSELFDGKRSLMPTGTDVEAPRCARVHVIMGTFGAGKSTLFKK 1158

Query: 2530 FTKKNPGKGVFYVSPRKALAQEHESKCMSLGKA-SVGALGGATRKSGR 2670
            F  K  G+ V YVSPRK LA   +S  M LG+     AL GA   S R
Sbjct: 1159 FMSKCSGRKVTYVSPRKVLADSFKS-MMGLGRTKGESALVGAENWSVR 1205


>emb|CAK54343.1| polyprotein, partial [Chrysanthemum virus B]
          Length = 2075

 Score =  184 bits (467), Expect = 9e-44
 Identities = 115/318 (36%), Positives = 160/318 (50%), Gaps = 1/318 (0%)
 Frame = +1

Query: 1651 GDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLEGAFAEDEAIICAVAT 1830
            G+GNCFW  L     L  +  K++A       A       +   EG +A DEAI CA + 
Sbjct: 983  GNGNCFWLCLANELGLCPFRGKKLALEYDLGSAGANETARSCAGEGVYAVDEAIACAASV 1042

Query: 1831 LKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCLLHAIAHALNRQFH 2010
             +  I IY  E   +  +  T G    IYL L  EHF  +   N C++ A+A ALNR+  
Sbjct: 1043 FRVAIKIYQPELSVMTVFEPTKGER-VIYLELSGEHFRLMRIINGCVVKAMASALNRKES 1101

Query: 2011 EVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISGSSAATYNEEGRVVAN 2190
            EV+ V+E      M    W G+G+D+        LF I+A +  GS    YN EGR  A+
Sbjct: 1102 EVMHVIEENCDPMMVTSLWNGEGVDLGVFHSLLELFSIKALIFEGSREVLYNREGRFEAS 1161

Query: 2191 FILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLTYRAELARARVLAD 2370
            F +   HI +  +       + +       V   S+  LN  GT+L Y + LARAR LAD
Sbjct: 1162 FEIKGDHIEHVHRKKGACNALFEECGKTHEVKAESLELLNRAGTLLNYESTLARARRLAD 1221

Query: 2371 SLEAGSTGIISSKLFNQCPNL-GAQIRTDGGFKDSQICCILGTFGAGKSSLFTEFTKKNP 2547
            SL +G+TG++SS LFN+ PNL   Q R         +  ++GT G+GKS++   F K N 
Sbjct: 1222 SLCSGTTGVVSSSLFNKKPNLFPVQFREKNESLSRDVLAVIGTLGSGKSTILKNFFKINL 1281

Query: 2548 GKGVFYVSPRKALAQEHE 2601
            G+ V YVSPR+AL  E +
Sbjct: 1282 GRKVLYVSPRRALLNEFQ 1299



 Score =  160 bits (404), Expect = 4e-36
 Identities = 107/362 (29%), Positives = 159/362 (43%), Gaps = 19/362 (5%)
 Frame = +3

Query: 537  YLGDKPDGKAMPRDFILQFAKIVGDVTGPVNRPKLTKRGCPPQFRYCRAKLGECDKCKGT 716
            +L  +PDG    +  +  ++K++ +VT               QF   +       +C+ +
Sbjct: 590  FLTAQPDGHGTYKSLMHPWSKVMHEVTNH-------------QFHSSKTSNYSWLRCERS 636

Query: 717  DGKKSAENKASGGATNAQHAHSPEETGTSGEHEIPSAPAGQGG-------------GNCS 857
              K +      GGA + +      E+  S   E P +  G+G              G C 
Sbjct: 637  TDKPTETCGVHGGARSGRVVGRKAESKGSAGGEDPKSDQGEGKDQGEERPVDEAAHGGCP 696

Query: 858  PKKEECETPDFEEVAELPPLICICGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWYSLGGV 1037
            P+ +        E      + C C + + +        H F+ PD+L+ R AG+YS  GV
Sbjct: 697  PQPQAYSN----EEKGAHTVQCPCSVVLSIRNDGATRLHKFQTPDRLKNRYAGFYSKNGV 752

Query: 1038 PYRYNGGSHTSLGWPDWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESIFEVGS 1217
             Y YNGG H SL WP WI  WM   GI  + YNCCL Q Y++   IG H D+E  F  G 
Sbjct: 753  GYSYNGGEHQSLNWPGWISVWMRLVGI-PEIYNCCLVQRYDENAKIGMHSDDEECFVTGG 811

Query: 1218 MVHTCNLDGYASFGIMC----TNRATDYDLKPGTHFTMPQNFQVTHRHALLNCSANRASL 1385
             ++T N++G A+F   C    T   T ++L PG  F MP  FQ TH+HA+   S +R S+
Sbjct: 812  PIYTVNIEGRATFMTTCKEGKTKEITSFELGPGDLFEMPGGFQETHKHAVFETSKDRLSV 871

Query: 1386 TFRRMKXXXEERGGSTPVNEEPXXXXXXXXXXXXEQTPVENTVEEPERTEPTGSK--EHG 1559
            TFR MK   ++       + E             E+T   NT +E    E  G++  EHG
Sbjct: 872  TFRLMKQICQDE----QKDHEETDTSGGKKAGEAEETEQPNTEKENPDEEGAGNEEGEHG 927

Query: 1560 KA 1565
             +
Sbjct: 928  SS 929


>emb|CAO78688.1| polyprotein [Chrysanthemum virus B]
          Length = 2078

 Score =  184 bits (467), Expect = 9e-44
 Identities = 115/318 (36%), Positives = 160/318 (50%), Gaps = 1/318 (0%)
 Frame = +1

Query: 1651 GDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLEGAFAEDEAIICAVAT 1830
            G+GNCFW  L     L  +  K++A       A       +   EG +A DEAI CA + 
Sbjct: 986  GNGNCFWLCLANELGLCPFRGKKLALEYDLGSAGANETARSCAGEGVYAVDEAIACAASV 1045

Query: 1831 LKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCLLHAIAHALNRQFH 2010
             +  I IY  E   +  +  T G    IYL L  EHF  +   N C++ A+A ALNR+  
Sbjct: 1046 FRVAIKIYQPELSVMTVFEPTKGER-VIYLELSGEHFRLMRIINGCVVKAMASALNRKES 1104

Query: 2011 EVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISGSSAATYNEEGRVVAN 2190
            EV+ V+E      M    W G+G+D+        LF I+A +  GS    YN EGR  A+
Sbjct: 1105 EVMHVIEENCDPMMVTSLWNGEGVDLGVFHSLLELFSIKALIFEGSREVLYNREGRFEAS 1164

Query: 2191 FILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLTYRAELARARVLAD 2370
            F +   HI +  +       + +       V   S+  LN  GT+L Y + LARAR LAD
Sbjct: 1165 FEIKGDHIEHVHRKKGACNALFEECGKTHEVKAESLELLNRAGTLLNYESTLARARRLAD 1224

Query: 2371 SLEAGSTGIISSKLFNQCPNL-GAQIRTDGGFKDSQICCILGTFGAGKSSLFTEFTKKNP 2547
            SL +G+TG++SS LFN+ PNL   Q R         +  ++GT G+GKS++   F K N 
Sbjct: 1225 SLCSGTTGVVSSSLFNKKPNLFPVQFREKNESLSRDVLAVIGTLGSGKSTILKNFFKINL 1284

Query: 2548 GKGVFYVSPRKALAQEHE 2601
            G+ V YVSPR+AL  E +
Sbjct: 1285 GRKVLYVSPRRALLNEFQ 1302



 Score =  160 bits (404), Expect = 4e-36
 Identities = 107/362 (29%), Positives = 159/362 (43%), Gaps = 19/362 (5%)
 Frame = +3

Query: 537  YLGDKPDGKAMPRDFILQFAKIVGDVTGPVNRPKLTKRGCPPQFRYCRAKLGECDKCKGT 716
            +L  +PDG    +  +  ++K++ +VT               QF   +       +C+ +
Sbjct: 593  FLTAQPDGHGTYKSLMHPWSKVMHEVTNH-------------QFHSSKTSNYSWLRCERS 639

Query: 717  DGKKSAENKASGGATNAQHAHSPEETGTSGEHEIPSAPAGQGG-------------GNCS 857
              K +      GGA + +      E+  S   E P +  G+G              G C 
Sbjct: 640  TDKPTETCGVHGGARSGRVVGRKAESKGSAGGEDPKSDQGEGKDQGEERPVDEAAHGGCP 699

Query: 858  PKKEECETPDFEEVAELPPLICICGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWYSLGGV 1037
            P+ +        E      + C C + + +        H F+ PD+L+ R AG+YS  GV
Sbjct: 700  PQPQAYSN----EEKGAHTVQCPCSVVLSIRNDGATRLHKFQTPDRLKNRYAGFYSKNGV 755

Query: 1038 PYRYNGGSHTSLGWPDWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESIFEVGS 1217
             Y YNGG H SL WP WI  WM   GI  + YNCCL Q Y++   IG H D+E  F  G 
Sbjct: 756  GYSYNGGEHQSLNWPGWISVWMRLVGI-PEIYNCCLVQRYDENAKIGMHSDDEECFVTGG 814

Query: 1218 MVHTCNLDGYASFGIMC----TNRATDYDLKPGTHFTMPQNFQVTHRHALLNCSANRASL 1385
             ++T N++G A+F   C    T   T ++L PG  F MP  FQ TH+HA+   S +R S+
Sbjct: 815  PIYTVNIEGRATFMTTCKEGKTKEITSFELGPGDLFEMPGGFQETHKHAVFETSKDRLSV 874

Query: 1386 TFRRMKXXXEERGGSTPVNEEPXXXXXXXXXXXXEQTPVENTVEEPERTEPTGSK--EHG 1559
            TFR MK   ++       + E             E+T   NT +E    E  G++  EHG
Sbjct: 875  TFRLMKQICQDE----QKDHEETDTSGGKKAGEAEETEQPNTEKENPDEEGAGNEEGEHG 930

Query: 1560 KA 1565
             +
Sbjct: 931  SS 932


>emb|CAK97712.1| polyprotein, partial [Chrysanthemum virus B]
          Length = 2079

 Score =  184 bits (467), Expect = 9e-44
 Identities = 115/318 (36%), Positives = 160/318 (50%), Gaps = 1/318 (0%)
 Frame = +1

Query: 1651 GDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLEGAFAEDEAIICAVAT 1830
            G+GNCFW  L     L  +  K++A       A       +   EG +A DEAI CA + 
Sbjct: 987  GNGNCFWLCLANELGLCPFRGKKLALEYDLGSAGANETARSCAGEGVYAVDEAIACAASV 1046

Query: 1831 LKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCLLHAIAHALNRQFH 2010
             +  I IY  E   +  +  T G    IYL L  EHF  +   N C++ A+A ALNR+  
Sbjct: 1047 FRVAIKIYQPELSVMTVFEPTKGER-VIYLELSGEHFRLMRIINGCVVKAMASALNRKES 1105

Query: 2011 EVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISGSSAATYNEEGRVVAN 2190
            EV+ V+E      M    W G+G+D+        LF I+A +  GS    YN EGR  A+
Sbjct: 1106 EVMHVIEENCDPMMVTSLWNGEGVDLGVFHSLLELFSIKALIFEGSREVLYNREGRFEAS 1165

Query: 2191 FILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLTYRAELARARVLAD 2370
            F +   HI +  +       + +       V   S+  LN  GT+L Y + LARAR LAD
Sbjct: 1166 FEIKGDHIEHVHRKKGACNALFEECGKTHEVKAESLELLNRAGTLLNYESTLARARRLAD 1225

Query: 2371 SLEAGSTGIISSKLFNQCPNL-GAQIRTDGGFKDSQICCILGTFGAGKSSLFTEFTKKNP 2547
            SL +G+TG++SS LFN+ PNL   Q R         +  ++GT G+GKS++   F K N 
Sbjct: 1226 SLCSGTTGVVSSSLFNKKPNLFPVQFREKNESLSRDVLAVIGTLGSGKSTILKNFFKINL 1285

Query: 2548 GKGVFYVSPRKALAQEHE 2601
            G+ V YVSPR+AL  E +
Sbjct: 1286 GRKVLYVSPRRALLNEFQ 1303



 Score =  144 bits (363), Expect = 3e-31
 Identities = 106/367 (28%), Positives = 156/367 (42%), Gaps = 24/367 (6%)
 Frame = +3

Query: 537  YLGDKPDGKAMPRDFILQFAKIVGDVTGPVNRPKLTKRGCPPQFRYCRAKLGECDKCKGT 716
            +L  +PDG    +  +  ++K++ +VT               QF   +       +C+ +
Sbjct: 590  FLTAQPDGHGTYKSLMHPWSKVMHEVTNH-------------QFHSSKTSNYSWLRCERS 636

Query: 717  DGKKSAENKASGGATNAQHAHSPEETGTSGEHEIPSAPAGQGGGNCSPKKEECETPDFEE 896
              K +      GGA +       ++  + G   +    + QG G     K++ E    +E
Sbjct: 637  TDKPTETCGVHGGARSEAVGGGRKKAESKGSAGVEDPKSDQGEG-----KDQGEERPVDE 691

Query: 897  VA--ELP---PLICI-------------CGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWY 1022
             A  ELP   P                 C + + +        H F      Q R AG+Y
Sbjct: 692  AAHGELPFHRPQAYFNEEKGCTHGGSGPCSVVLSIRNDGATRLHKFPNAGPAQNRYAGFY 751

Query: 1023 SLGGVPYRYNGGSHTSLGWPDWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESI 1202
            S  GV Y YNGG H SL WP WI  WM   GI  + YNCCL Q Y++   IG H D+E  
Sbjct: 752  SKNGVGYSYNGGEHQSLNWPGWISVWMRLVGI-PEIYNCCLVQRYDENAKIGMHSDDEEC 810

Query: 1203 FEVGSMVHTCNLDGYASFGIMC----TNRATDYDLKPGTHFTMPQNFQVTHRHALLNCSA 1370
            F  G  ++T N++G A+F   C    T   T ++L PG  F MP  FQ TH+HA+   S 
Sbjct: 811  FVTGGPIYTVNIEGRATFMTTCKEGKTKEITSFELGPGDLFEMPGGFQETHKHAVFETSK 870

Query: 1371 NRASLTFRRMKXXXEERGGSTPVNEEPXXXXXXXXXXXXEQTPVENTVEEPERTEPTGSK 1550
            +R S+TFR MK   ++       + E             E+T   NT +E    E  G++
Sbjct: 871  DRLSVTFRLMKQICQDE----QKDHEETDTSGGKKAGEAEETEQPNTEKENPDEEGAGNE 926

Query: 1551 --EHGKA 1565
              EHG +
Sbjct: 927  EGEHGSS 933


>ref|YP_001086452.2| polyprotein [Chrysanthemum virus B]
 emb|CAM35753.2| polyprotein [Chrysanthemum virus B]
          Length = 2082

 Score =  184 bits (467), Expect = 9e-44
 Identities = 115/318 (36%), Positives = 160/318 (50%), Gaps = 1/318 (0%)
 Frame = +1

Query: 1651 GDGNCFWYSLEKATALQWYSVKEIAARCTFTQAELQRRKETQFLEGAFAEDEAIICAVAT 1830
            G+GNCFW  L     L  +  K++A       A       +   EG +A DEAI CA + 
Sbjct: 990  GNGNCFWLCLANELGLCPFRGKKLALEYDLGSAGANETARSCAGEGVYAVDEAIACAASV 1049

Query: 1831 LKKNIIIYVEEQRAVYEYTGTCGNADSIYLLLRNEHFEYIEPKNSCLLHAIAHALNRQFH 2010
             +  I IY  E   +  +  T G    IYL L  EHF  +   N C++ A+A ALNR+  
Sbjct: 1050 FRVAIKIYQPELSVMTVFEPTKGER-VIYLELSGEHFRLMRIINGCVVKAMASALNRKES 1108

Query: 2011 EVLTVVERVLGSCMSGETWVGQGIDVADLGFYFSLFDIRACVISGSSAATYNEEGRVVAN 2190
            EV+ V+E      M    W G+G+D+        LF I+A +  GS    YN EGR  A+
Sbjct: 1109 EVMHVIEENCDPMMVTSLWNGEGVDLGVFHSLLELFSIKALIFEGSREVLYNREGRFEAS 1168

Query: 2191 FILSEGHITYSSKNPSVDIKILKGEQTGLSVSNTSVIELNANGTMLTYRAELARARVLAD 2370
            F +   HI +  +       + +       V   S+  LN  GT+L Y + LARAR LAD
Sbjct: 1169 FEIKGDHIEHVHRKKGACNALFEECGKTHEVKAESLELLNRAGTLLNYESTLARARRLAD 1228

Query: 2371 SLEAGSTGIISSKLFNQCPNL-GAQIRTDGGFKDSQICCILGTFGAGKSSLFTEFTKKNP 2547
            SL +G+TG++SS LFN+ PNL   Q R         +  ++GT G+GKS++   F K N 
Sbjct: 1229 SLCSGTTGVVSSSLFNKKPNLFPVQFREKNESLSRDVLAVIGTLGSGKSTILKNFFKINL 1288

Query: 2548 GKGVFYVSPRKALAQEHE 2601
            G+ V YVSPR+AL  E +
Sbjct: 1289 GRKVLYVSPRRALLNEFQ 1306



 Score =  144 bits (363), Expect = 3e-31
 Identities = 106/367 (28%), Positives = 156/367 (42%), Gaps = 24/367 (6%)
 Frame = +3

Query: 537  YLGDKPDGKAMPRDFILQFAKIVGDVTGPVNRPKLTKRGCPPQFRYCRAKLGECDKCKGT 716
            +L  +PDG    +  +  ++K++ +VT               QF   +       +C+ +
Sbjct: 593  FLTAQPDGHGTYKSLMHPWSKVMHEVTNH-------------QFHSSKTSNYSWLRCERS 639

Query: 717  DGKKSAENKASGGATNAQHAHSPEETGTSGEHEIPSAPAGQGGGNCSPKKEECETPDFEE 896
              K +      GGA +       ++  + G   +    + QG G     K++ E    +E
Sbjct: 640  TDKPTETCGVHGGARSEAVGGGRKKAESKGSAGVEDPKSDQGEG-----KDQGEERPVDE 694

Query: 897  VA--ELP---PLICI-------------CGLCIGVSTMRLPSGHNFKAPDQLQKRRAGWY 1022
             A  ELP   P                 C + + +        H F      Q R AG+Y
Sbjct: 695  AAHGELPFHRPQAYFNEEKGCTHGGSGPCSVVLSIRNDGATRLHKFPNAGPAQNRYAGFY 754

Query: 1023 SLGGVPYRYNGGSHTSLGWPDWIKDWMFCNGIDSDYYNCCLYQIYEKGGAIGFHQDNESI 1202
            S  GV Y YNGG H SL WP WI  WM   GI  + YNCCL Q Y++   IG H D+E  
Sbjct: 755  SKNGVGYSYNGGEHQSLNWPGWISVWMRLVGI-PEIYNCCLVQRYDENAKIGMHSDDEEC 813

Query: 1203 FEVGSMVHTCNLDGYASFGIMC----TNRATDYDLKPGTHFTMPQNFQVTHRHALLNCSA 1370
            F  G  ++T N++G A+F   C    T   T ++L PG  F MP  FQ TH+HA+   S 
Sbjct: 814  FVTGGPIYTVNIEGRATFMTTCKEGKTKEITSFELGPGDLFEMPGGFQETHKHAVFETSK 873

Query: 1371 NRASLTFRRMKXXXEERGGSTPVNEEPXXXXXXXXXXXXEQTPVENTVEEPERTEPTGSK 1550
            +R S+TFR MK   ++       + E             E+T   NT +E    E  G++
Sbjct: 874  DRLSVTFRLMKQICQDE----QKDHEETDTSGGKKAGEAEETEQPNTEKENPDEEGAGNE 929

Query: 1551 --EHGKA 1565
              EHG +
Sbjct: 930  EGEHGSS 936