BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Chrysanthemum21_contig00000008
         (8736 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AVN98095.1| replicase [Chrysanthemum virus R]                     2293   0.0  
emb|CAO78682.1| polyprotein [Chrysanthemum virus B]                  1870   0.0  
emb|CAK54344.1| polyprotein, partial [Chrysanthemum virus B]         1865   0.0  
ref|YP_001086452.2| polyprotein [Chrysanthemum virus B] >gi|1547...  1822   0.0  
emb|CAK97712.1| polyprotein, partial [Chrysanthemum virus B]         1817   0.0  
emb|CAO78688.1| polyprotein [Chrysanthemum virus B]                  1815   0.0  
emb|CAK54345.1| polyprotein, partial [Chrysanthemum virus B]         1814   0.0  
emb|CAO78694.1| polyprotein [Chrysanthemum virus B]                  1811   0.0  
emb|CAK54343.1| polyprotein, partial [Chrysanthemum virus B]         1810   0.0  
emb|CAK54342.1| polyprotein, partial [Chrysanthemum virus B]         1806   0.0  
ref|YP_001552317.1| replicase [Phlox virus B] >gi|157932100|gb|A...  1093   0.0  
ref|YP_009288956.1| replicase [Ligustrum virus A] >gi|1064270261...  1047   0.0  
dbj|BAF95196.1| replicase [Chrysanthemum virus B]                    1034   0.0  
dbj|BAU20378.1| replicase [Daphne virus S]                           1024   0.0  
ref|YP_595727.1| replicase [Daphne virus S] >gi|58415290|emb|CAF...  1018   0.0  
ref|YP_009022064.1| replicase [Gaillardia latent virus] >gi|6011...  1017   0.0  
gb|AJR19303.1| viral replicase [Hop latent virus]                    1012   0.0  
ref|NP_066258.1| polyprotein [Hop latent virus] >gi|10241913|dbj...   994   0.0  
emb|CDK36471.1| polyprotein [Hop latent virus]                        994   0.0  
ref|YP_001165301.1| replicase [Phlox virus S] >gi|145206988|gb|A...   990   0.0  

>gb|AVN98095.1| replicase [Chrysanthemum virus R]
          Length = 2075

 Score = 2293 bits (5943), Expect = 0.0
 Identities = 1132/1574 (71%), Positives = 1283/1574 (81%), Gaps = 34/1574 (2%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            MALT+RSPIADVITNFDPSINSIIATTAAEHYK+LEEENFALFNYAMSPQTTQHLI AGI
Sbjct: 1    MALTFRSPIADVITNFDPSINSIIATTAAEHYKRLEEENFALFNYAMSPQTTQHLIDAGI 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSPFSGVPHSHPACKTLENYILYIVLPQY+DNSFYFVGIKDFKLNALK RHKHTNMVQC
Sbjct: 61   YLSPFSGVPHSHPACKTLENYILYIVLPQYIDNSFYFVGIKDFKLNALKLRHKHTNMVQC 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            INRYVTSQDK+RYPSDFV+R+SKPH GLSRHRMSLE  TLRDLVPELM RSCKK+FLHDE
Sbjct: 121  INRYVTSQDKMRYPSDFVIRYSKPHEGLSRHRMSLESHTLRDLVPELMSRSCKKIFLHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            LHYWKIDELCTFLEVVQP+VV+GTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV
Sbjct: 181  LHYWKIDELCTFLEVVQPKVVIGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
            R EGYEQPLNGGFLLECGKI L DGT+YMVDIL SKFAHHL++LTRG AAGP+MRS+GPF
Sbjct: 241  RGEGYEQPLNGGFLLECGKITLYDGTVYMVDILCSKFAHHLVALTRGVAAGPTMRSFGPF 300

Query: 7772 EATACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 7593
            EATACNGLDPL RDV+CSFPI YEVVSK+YRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI
Sbjct: 301  EATACNGLDPLTRDVTCSFPIPYEVVSKVYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 360

Query: 7592 VFEQEFSKLVISTNSIKTMISADRLKIFMGKYLSRLPKVIAERFDTVKEISLHEFIKNLE 7413
            VF QEFS LVISTN+IKTMISADRLK+F+GKYLS+LPK++AERF+TVKE+SLHEFIKNLE
Sbjct: 361  VFVQEFSSLVISTNTIKTMISADRLKVFLGKYLSKLPKILAERFETVKELSLHEFIKNLE 420

Query: 7412 PFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGYYMT 7233
            PFTVDV LKE+KWNNVWTLEL+DDGMADELLDP R++++K+  G Y+A+PDR+SAGYY+ 
Sbjct: 421  PFTVDVQLKELKWNNVWTLELRDDGMADELLDPSRLMEEKYTHGVYNAVPDRRSAGYYVR 480

Query: 7232 REKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFFRMICARPFLRPA 7053
            +E L  + GPLIE++R VLK TLA+ICYKSLSNSDGTLASINEI AFFRMICARPFLRPA
Sbjct: 481  KEMLERMRGPLIEIERNVLKNTLAAICYKSLSNSDGTLASINEIGAFFRMICARPFLRPA 540

Query: 7052 KWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKYLTVHPNGGTT 6873
            K+KV+DLYG NGAIGLQ YMRSRWAR V FYWANIG++WFR N+K YQKYL   P+G  T
Sbjct: 541  KYKVHDLYGSNGAIGLQIYMRSRWARLVKFYWANIGILWFRSNHKFYQKYLCSVPDGIQT 600

Query: 6872 YSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRC--------GGRKVP-ECTQAEETNVPP 6720
            Y    Q W  V  EV      LKKT N+SWLRC        G  + P    ++ ET    
Sbjct: 601  YRTFTQPWKTVVHEVVCVKHTLKKTGNYSWLRCARVAQKHGGTNEEPIRADRSTETAGGG 660

Query: 6719 PEEKEANTESVNEPH-----------------FSSEPPPMYEYKEETSATREVKCSCGLI 6591
             +  EA T+  N+ +                 +   PPP      +    R +KC+C L+
Sbjct: 661  SQFNEARTDQDNKTNGGDAPNEGEWTPPQGSKYEEMPPPPQRQGSQREEQRAIKCTCNLV 720

Query: 6590 ITIEKDPSASLHKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTLLGI 6411
            + I  D +   HKF TPDRLKNR AGFYSK+ +GY YNGG+HQSL WP W+N+WM L+GI
Sbjct: 721  LPISTDEATRHHKFLTPDRLKNRCAGFYSKNKEGYTYNGGSHQSLGWPGWINAWMRLIGI 780

Query: 6410 PEEYNCCLVQRYDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDGVNF 6231
            PE YNCCLVQRYD G  +GLHSDDE+CF++G+PVFTVNIEG A F IACK          
Sbjct: 781  PEFYNCCLVQRYDEGAKLGLHSDDEECFVQGSPVFTVNIEGHATFLIACKNSPERRVTRS 840

Query: 6230 ALNSGEYFEMPRGFQETHKHGVGSTSKGRLSVTFRIMRDERETPETHSGTNGNHDAEPEG 6051
             +  G+ FEMP GFQETHKHGV  T KGRLSVTFR+M+        HSG   +H A  EG
Sbjct: 841  IVGPGDLFEMPGGFQETHKHGVCETEKGRLSVTFRVMK-----KNPHSGEEKDHGAS-EG 894

Query: 6050 GANSPKN-------ETHFENDEEQSNSDEANQDATSESDCGHSEEPQEQSGDQRKNRGAE 5892
              N  +N       ETH E  +++   +   +++  ES  G SEE +++  D   N  A 
Sbjct: 895  HQNGTENVNDQSESETHEEKPQQEGVKE---RESVQESGEGISEEHKQEQSDCPNNGTAG 951

Query: 5891 ASTEGFTRNFNGCKVSVCTGILSHTYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRH 5712
            A TE F+R+FNGCKVSV    L+H Y+T DCGGGGNCFWLCLA E+G +    KKLAL +
Sbjct: 952  AGTEAFSRHFNGCKVSVRKEELAHIYSTTDCGGGGNCFWLCLATEMGCDPFRGKKLALEY 1011

Query: 5711 DLGSAGANLEALKCAGEGVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRSDRVLH 5532
            DLGSAGAN  A  CAGEGVYAVDEAIACAA  F++ I++YQP+  + T FEP + +RVLH
Sbjct: 1012 DLGSAGANESARSCAGEGVYAVDEAIACAASVFRVVIKIYQPELNVMTTFEPAKGERVLH 1071

Query: 5531 LELKDEHFRIMRIVNGCVIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVF 5352
            LEL+ EHFR+MRI+NGCVIRAISSALNR E E+MHVIEENCD TM+ DLWKG GVDL VF
Sbjct: 1072 LELEGEHFRLMRIINGCVIRAISSALNRREGEVMHVIEENCDPTMITDLWKGAGVDLSVF 1131

Query: 5351 QALLELFSIKALIFENGKEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKV 5172
             +LLELFSIKALIFE  +EVLYN EGRF ASFEI GDHIEH LRKK AC  LFEECG+  
Sbjct: 1132 HSLLELFSIKALIFEGSREVLYNSEGRFEASFEIKGDHIEHVLRKKGACNVLFEECGKTF 1191

Query: 5171 GVKAESLELLNKAGTNIRYQSTLARARRLADSLCAGATGVVSSSLFNKRPNLAGKFRVNT 4992
             VKAESLELLN+AGT ++Y+STLARA+RLADSLC+G TGVVSSSLFNK+PNLAG+FR  T
Sbjct: 1192 EVKAESLELLNRAGTLLKYKSTLARAKRLADSLCSGTTGVVSSSLFNKKPNLAGQFREKT 1251

Query: 4991 EVLGRDVLAVIGTFGSGKSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVAR-XXX 4815
            E L RDVLAVIGTFGSGKSTILKNFFKINLGRKVLYVSPR+ALL EF  + CG  +    
Sbjct: 1252 ESLDRDVLAVIGTFGSGKSTILKNFFKINLGRKVLYVSPRRALLNEFQRSACGDFKDKKE 1311

Query: 4814 XXXXXXXXQENWDFMTFESFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHIV 4635
                    QENWDFMTFE+FIL CS+LP+GMAV+LDEIQLYPPGYLDMLCYL+ +GVH++
Sbjct: 1312 RKNARKKGQENWDFMTFETFILKCSSLPSGMAVVLDEIQLYPPGYLDMLCYLVKEGVHLI 1371

Query: 4634 VAGDPAQSDYDSEKDRVWLHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCTFNIP 4455
            VAGDPAQSDYDSEKDR WLHG+EPDHSKLL+G  YKYVTLSKRMQNSMF GRLPCT  + 
Sbjct: 1372 VAGDPAQSDYDSEKDRAWLHGVEPDHSKLLTGNEYKYVTLSKRMQNSMFEGRLPCTLKVA 1431

Query: 4454 KTSDADEDFEVRGGIEIIHKIEAKWKECYLVSSFEEKRLVEYYQDEKGKREEKVLTFGES 4275
            K +D +EDFE+RGG+EIIHK+++KW+EC+LVSSFEEKRL+EYYQ E  K +E +LTFGES
Sbjct: 1432 KNADTNEDFEIRGGVEIIHKLDSKWRECFLVSSFEEKRLIEYYQTESSKDKECILTFGES 1491

Query: 4274 TGLTFNYGCILITQSSEKTNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRALGRF 4095
            TGLTF+YG ILITQSSEKTNEQRW+TALSRFRKS+CFINATGM+LHELLLVY+DRALGRF
Sbjct: 1492 TGLTFDYGSILITQSSEKTNEQRWITALSRFRKSVCFINATGMTLHELLLVYKDRALGRF 1551

Query: 4094 LGKRADVEDLRKFL 4053
            LGKRA VEDL+KFL
Sbjct: 1552 LGKRASVEDLKKFL 1565



 Score =  911 bits (2354), Expect = 0.0
 Identities = 446/485 (91%), Positives = 463/485 (95%)
 Frame = -1

Query: 4047 AGDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEAR 3868
            AGDPWLKTMIDLLQIED         EIAREEWFKTHLPQEELESVRARWVHKILAKEAR
Sbjct: 1591 AGDPWLKTMIDLLQIEDVEEEVGVVEEIAREEWFKTHLPQEELESVRARWVHKILAKEAR 1650

Query: 3867 EVRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPL 3688
            EVRMGDIVSEQF DEHSKEKGKQLTNAAERFE IYPRHRSSDTVTF+MAVRKRLRFSKP 
Sbjct: 1651 EVRMGDIVSEQFTDEHSKEKGKQLTNAAERFETIYPRHRSSDTVTFIMAVRKRLRFSKPT 1710

Query: 3687 VEVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIR 3508
            VE+PKLRAAKPYGPMLLKKFLKHVPLKPN+DPILMA+AKMEFE KKVSKSAA IENHS+R
Sbjct: 1711 VEMPKLRAAKPYGPMLLKKFLKHVPLKPNKDPILMARAKMEFEEKKVSKSAATIENHSVR 1770

Query: 3507 STRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRES 3328
            STRDWL+D+GQIFSKSQICTKFEKRFS AKAAQSIVCFQHSVLVRFAPYMRYIELKLRES
Sbjct: 1771 STRDWLVDVGQIFSKSQICTKFEKRFSAAKAAQSIVCFQHSVLVRFAPYMRYIELKLRES 1830

Query: 3327 LPDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQ 3148
            LPDRFYIHSGKGL+ELD WVR+HGF G+CTESDYEAFDASQDQYIVAFE+ALM YLGLPQ
Sbjct: 1831 LPDRFYIHSGKGLDELDSWVRSHGFSGMCTESDYEAFDASQDQYIVAFEIALMKYLGLPQ 1890

Query: 3147 SLIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGD 2968
            SLIADYE+IKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRY+INN D ICFAGD
Sbjct: 1891 SLIADYEFIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYDINNKDCICFAGD 1950

Query: 2967 DMCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAK 2788
            DMCASR+LPLSKEYESFLSKLKLKAKVQFT KPTFCGWNLSPDGIYKKPQLVLERMCIAK
Sbjct: 1951 DMCASRRLPLSKEYESFLSKLKLKAKVQFTEKPTFCGWNLSPDGIYKKPQLVLERMCIAK 2010

Query: 2787 ETNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVY 2608
            ETNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRII+KN+HLLRSN+SEVY
Sbjct: 2011 ETNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIIKNKHLLRSNISEVY 2070

Query: 2607 GNRAW 2593
             NRAW
Sbjct: 2071 SNRAW 2075


>emb|CAO78682.1| polyprotein [Chrysanthemum virus B]
          Length = 2079

 Score = 1870 bits (4843), Expect = 0.0
 Identities = 950/1574 (60%), Positives = 1138/1574 (72%), Gaps = 38/1574 (2%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            MALTYRSP+ + +  +D S+ + IA+T+A ++++ E  NF  FNY + P   +HLI AGI
Sbjct: 1    MALTYRSPMEENVGAYDSSVQAAIASTSANYHREAEVSNFQFFNYYLRPIAKRHLIEAGI 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSP+S VPHSH ACKTLEN++LY VLP  +DN F+FVGIK  KL  LK R+   + +  
Sbjct: 61   YLSPYSAVPHSHAACKTLENHLLYNVLPPLVDNRFHFVGIKQSKLEFLKLRNSKLSTISK 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            INR+VTS DK RY SDFV + SKPH G  RH + +E PTLRDL+P L  R  K LFLHDE
Sbjct: 121  INRFVTSADKARYGSDFVKKVSKPHVGFKRHELQVETPTLRDLLPCLKEREAKYLFLHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            LHYW  ++L + LEV+QP+++LGT+VYPPELL GS +SLN WCY YEVK +   FYPDGV
Sbjct: 181  LHYWSKEDLISLLEVLQPEMMLGTMVYPPELLFGSNRSLNPWCYAYEVKKKNFLFYPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
            R+EGYEQPLNGG+LLECGKI L  GT+Y VDIL SKFAHHL+S+TRGEAAGP+MRS+GPF
Sbjct: 241  RSEGYEQPLNGGYLLECGKITLVGGTVYKVDILCSKFAHHLVSITRGEAAGPTMRSFGPF 300

Query: 7772 EATACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 7593
            EATACNGLDPL RDVSCSFPI YEVVSK+YRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI
Sbjct: 301  EATACNGLDPLTRDVSCSFPIPYEVVSKVYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 360

Query: 7592 VFEQEFSKLVISTNSIKTMISADRLKIFMGKYLSRLPKVIAERFDTVKEISLHEFIKNLE 7413
            VF QEFS LVI+TN++KTMISADRLKIFMGKYLS+LPK++AERF+TVKEISLHEFIKNLE
Sbjct: 361  VFVQEFSNLVIATNTVKTMISADRLKIFMGKYLSKLPKILAERFETVKEISLHEFIKNLE 420

Query: 7412 PFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGYYMT 7233
            PFTVDV LKE+KWNNVWTLELKDDG+ADE LDP+RM++++FG G Y A+PDR SAGYY+ 
Sbjct: 421  PFTVDVQLKELKWNNVWTLELKDDGLADEFLDPVRMIEERFGRGEYVAVPDRTSAGYYLA 480

Query: 7232 REKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFFRMICARPFLRPA 7053
            +  L  L GPLIE+++ VL++TLA+ICYKSLSNSDGT+ASINEIAAFFRMICA+PFLRPA
Sbjct: 481  KPSLAKLRGPLIEIEQRVLRITLAAICYKSLSNSDGTIASINEIAAFFRMICAKPFLRPA 540

Query: 7052 KWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKYLTVHPNGGTT 6873
            K+KVYDLYG  GAIGLQ YMRSRWA +V FYWANIGL+WFR N K YQK+LT  P+G  T
Sbjct: 541  KYKVYDLYGEGGAIGLQKYMRSRWAHHVRFYWANIGLLWFRSNYKFYQKFLTAQPDGHGT 600

Query: 6872 YSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRC-----------------------GGRK 6762
            Y  LM  W  V  EV+       KT N+SWLRC                       GGRK
Sbjct: 601  YKSLMHPWSKVMHEVTNHQFHSSKTSNYSWLRCERSTDKPTETCGVHGGARPEAVGGGRK 660

Query: 6761 VPECTQAEETNVPPPEEKEANTES----VNEPHFSSEP--PPMYEYKEETSATREVKCSC 6600
              E   +     P  ++ E   +     V+E      P   P   + EE   T      C
Sbjct: 661  KAESKGSAGGEDPKSDQGEGKAQGEERPVDEAAHGEWPFHRPQAYFNEEKGCTHGGSAPC 720

Query: 6599 GLIITIEKDPSASLHKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTL 6420
             ++++I  D +  LHKF      +NR AGFYSK+G GY YNGG HQSLNWP W++ WM L
Sbjct: 721  SVVLSIRNDGATRLHKFPNAGPAQNRYAGFYSKNGVGYSYNGGEHQSLNWPGWISVWMRL 780

Query: 6419 LGIPEEYNCCLVQRYDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDG 6240
            +GIPE YNCCLVQRYD    IG+HSDDE+CF+ G P++TVNIEG A F   CK  +  + 
Sbjct: 781  VGIPEIYNCCLVQRYDENAKIGMHSDDEECFVTGGPIYTVNIEGRATFMTTCKEGKTKEI 840

Query: 6239 VNFALNSGEYFEMPRGFQETHKHGVGSTSKGRLSVTFRIMR----DERETPETHSGTNGN 6072
             +F L  G+ FEMP GFQETHKH V  TSK RLSVTFR+M+    DE++  E    + G 
Sbjct: 841  TSFELGPGDLFEMPGGFQETHKHAVFETSKDRLSVTFRLMKQICQDEQKDHEETDTSGGK 900

Query: 6071 HDAEPEGGANSPKNETHFENDEEQSNSDEANQDATSESDCGHSEEPQEQSGDQRKNRGAE 5892
               E E    + +  T  EN +E+   +E  +  +S S   + E  Q   G    N  AE
Sbjct: 901  KAGEAE---ETEQPNTEKENPDEEGAGNEEGEHGSSNS--RNKEREQGNDGSDCTNT-AE 954

Query: 5891 ASTEGFTRNFNGCKVSVCTGILSHTYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRH 5712
            +  E FTR+FNGCKVSV    L +TYNT DCGG GNCFWL LANE+G      KKLAL +
Sbjct: 955  SGAEAFTRHFNGCKVSVHAEKLPYTYNTTDCGGNGNCFWLDLANELGLCPFRGKKLALEY 1014

Query: 5711 DLGSAGANLEALKCAGEGVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRSDRVLH 5532
            DLGSAGAN  A  CAGEGVYAVDEAIACAA  F +AI++YQP+  + T+FEPT+ +RV++
Sbjct: 1015 DLGSAGANETARSCAGEGVYAVDEAIACAASVFSVAIKIYQPELSVMTVFEPTKGERVIY 1074

Query: 5531 LELKDEHFRIMRIVNGCVIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVF 5352
            LEL  EHFR+MRI+NGCV++A++SALNR E E+MHVIEENCD  MV  LW G GVDLGVF
Sbjct: 1075 LELSGEHFRLMRIINGCVVKAMASALNRKESEVMHVIEENCDPMMVTSLWNGEGVDLGVF 1134

Query: 5351 QALLELFSIKALIFENGKEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKV 5172
             +LLELFSIKALIFE  +EVLYNREGRF ASFEI GDHIEH  RKK AC  LFEECG+  
Sbjct: 1135 HSLLELFSIKALIFEGSREVLYNREGRFEASFEIKGDHIEHVHRKKGACNALFEECGKTH 1194

Query: 5171 GVKAESLELLNKAGTNIRYQSTLARARRLADSLCAGATGVVSSSLFNKRPNL-AGKFRVN 4995
             VKAESLELLN+AGT + Y+STLARARRLADSLC+G TGVVSSSLFNK+PNL   +FR  
Sbjct: 1195 EVKAESLELLNRAGTLLNYESTLARARRLADSLCSGTTGVVSSSLFNKKPNLFPVQFREK 1254

Query: 4994 TEVLGRDVLAVIGTFGSGKSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVAR-XX 4818
             E L RDVLAVIGT GSGKSTILKNFFKINLGRKVLYVSPR+ALL EF   VCG +R   
Sbjct: 1255 NESLSRDVLAVIGTLGSGKSTILKNFFKINLGRKVLYVSPRRALLNEFQRGVCGCSRNQE 1314

Query: 4817 XXXXXXXXXQENWDFMTFESFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHI 4638
                     QENWDFMTFE+FIL CS LP+GMAV+LDEIQLYPPGYLDM+CYL   GVH+
Sbjct: 1315 ERKAARKKGQENWDFMTFETFILKCSNLPSGMAVVLDEIQLYPPGYLDMICYLTKKGVHL 1374

Query: 4637 VVAGDPAQSDYDSEKDRVWLHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPC-TFN 4461
            +VAGDP QSDYD+E+DR WL  +  D  +LL GQ YK+   S R +N  F GRLPC    
Sbjct: 1375 IVAGDPCQSDYDNERDRAWLSTMRSDVEQLLDGQSYKFNVQSHRFKNENFRGRLPCEMIE 1434

Query: 4460 IPKTSDADEDFEVRGGIEIIHKIEAKWKECYLVSSFEEKRLVE--YYQDEKGKREEKVLT 4287
                    E+  +  G E + +I  ++   +LVSSF+EK+++E  +  DE    + KV T
Sbjct: 1435 SGSVEMLSEEHLLYTGCEELVQIMEEYSRVFLVSSFDEKKIIETHFPMDE----QRKVYT 1490

Query: 4286 FGESTGLTFNYGCILITQSSEKTNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRA 4107
            FGESTG++F  G I+IT  S  T+E+ W+TALSRF ++ICF+N      + L  +Y+ RA
Sbjct: 1491 FGESTGVSFRVGTIIITDVSAATSEKHWLTALSRFSENICFVNLLNTDWNGLFELYKHRA 1550

Query: 4106 LGRFLGKRADVEDL 4065
            LG FL +RA ++DL
Sbjct: 1551 LGHFLSQRAQLKDL 1564



 Score =  665 bits (1717), Expect = 0.0
 Identities = 335/481 (69%), Positives = 386/481 (80%)
 Frame = -1

Query: 4044 GDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEARE 3865
            G P LK MI L + ED          + +E+   T L +  LE VRAR   KI++ EARE
Sbjct: 1595 GGPLLKCMIVLGRGEDAQEVYLLEE-VMQEDLIVTRLHETVLEGVRARGGIKIMSNEARE 1653

Query: 3864 VRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPLV 3685
            VRMGDIVSEQF D++ K+ G  LTNAAERFE IYPRHR+SDTVTF+MAV+KRLRFS+P V
Sbjct: 1654 VRMGDIVSEQFTDDYPKDLGVNLTNAAERFETIYPRHRASDTVTFIMAVKKRLRFSRPAV 1713

Query: 3684 EVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIRS 3505
            E  KL+ AK YG  LL +FLK +PLK   +  +M +AK +FE KK SKSAA IENH+ RS
Sbjct: 1714 ERAKLQEAKLYGKFLLNEFLKKIPLKQAHNAAMMERAKFDFEEKKTSKSAATIENHAGRS 1773

Query: 3504 TRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRESL 3325
             RDWLID+G IFSKSQ+CTKF+ RF  AKAAQSIVCFQH+VL RFAPYMRY E KL E L
Sbjct: 1774 CRDWLIDVGLIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRFAPYMRYNEAKLHEVL 1833

Query: 3324 PDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQS 3145
            P RFYIHSGKGLEEL+ WV    F+G+CTESDYEAFDASQDQY+VAFELALM YLGLP+ 
Sbjct: 1834 PSRFYIHSGKGLEELNEWVIKGKFEGICTESDYEAFDASQDQYVVAFELALMEYLGLPRD 1893

Query: 3144 LIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGDD 2965
            LI DY +IK H GSKLG+FAIMRFSGEASTFLFNTMANMLFTF+RYNI ++++ICFAGDD
Sbjct: 1894 LIEDYAFIKCHFGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYNIRDNEHICFAGDD 1953

Query: 2964 MCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAKE 2785
            MCAS +L + KE+E FL+KLKLKAKV F  KPTFCGW+L PDGIYKKPQLVLERMCIAKE
Sbjct: 1954 MCASERLCIKKEHEGFLNKLKLKAKVFFVDKPTFCGWHLCPDGIYKKPQLVLERMCIAKE 2013

Query: 2784 TNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVYG 2605
             NNL NC+DNYAIEVSYAYK+GE+AVNRMDEEEL A YNCVRII+KN+ LL+S++   Y 
Sbjct: 2014 KNNLANCLDNYAIEVSYAYKLGERAVNRMDEEELEAAYNCVRIIIKNKKLLKSDILGFYS 2073

Query: 2604 N 2602
            N
Sbjct: 2074 N 2074


>emb|CAK54344.1| polyprotein, partial [Chrysanthemum virus B]
          Length = 2076

 Score = 1865 bits (4830), Expect = 0.0
 Identities = 947/1571 (60%), Positives = 1135/1571 (72%), Gaps = 38/1571 (2%)
 Frame = -2

Query: 8663 TYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGIYLS 8484
            TYRSP+ + +  +D S+ + IA+T+A ++++ E  NF  FNY + P   +HLI AGIYLS
Sbjct: 1    TYRSPMEENVGAYDSSVQAAIASTSANYHREAEVSNFQFFNYYLRPIAKRHLIEAGIYLS 60

Query: 8483 PFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQCINR 8304
            P+S VPHSH ACKTLEN++LY VLP  +DN F+FVGIK  KL  LK R+   + +  INR
Sbjct: 61   PYSAVPHSHAACKTLENHLLYNVLPPLVDNRFHFVGIKQSKLEFLKLRNSKLSTISKINR 120

Query: 8303 YVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDELHY 8124
            +VTS DK RY SDFV + SKPH G  RH + +E PTLRDL+P L  R  K LFLHDELHY
Sbjct: 121  FVTSADKARYGSDFVKKVSKPHVGFKRHELQVETPTLRDLLPCLKEREAKYLFLHDELHY 180

Query: 8123 WKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGVRAE 7944
            W  ++L + LEV+QP+++LGT+VYPPELL GS +SLN WCY YEVK +   FYPDGVR+E
Sbjct: 181  WSKEDLISLLEVLQPEMMLGTMVYPPELLFGSNRSLNPWCYAYEVKKKNFLFYPDGVRSE 240

Query: 7943 GYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPFEAT 7764
            GYEQPLNGG+LLECGKI L  GT+Y VDIL SKFAHHL+S+TRGEAAGP+MRS+GPFEAT
Sbjct: 241  GYEQPLNGGYLLECGKITLVGGTVYKVDILCSKFAHHLVSITRGEAAGPTMRSFGPFEAT 300

Query: 7763 ACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVFE 7584
            ACNGLDPL RDVSCSFPI YEVVSK+YRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVF 
Sbjct: 301  ACNGLDPLTRDVSCSFPIPYEVVSKVYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVFV 360

Query: 7583 QEFSKLVISTNSIKTMISADRLKIFMGKYLSRLPKVIAERFDTVKEISLHEFIKNLEPFT 7404
            QEFS LVI+TN++KTMISADRLKIFMGKYLS+LPK++AERF+TVKEISLHEFIKNLEPFT
Sbjct: 361  QEFSNLVIATNTVKTMISADRLKIFMGKYLSKLPKILAERFETVKEISLHEFIKNLEPFT 420

Query: 7403 VDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGYYMTREK 7224
            VDV LKE+KWNNVWTLELKDDG+ADE LDP+RM++++FG G Y A+PDR SAGYY+ +  
Sbjct: 421  VDVQLKELKWNNVWTLELKDDGLADEFLDPVRMIEERFGRGEYVAVPDRTSAGYYLAKPS 480

Query: 7223 LRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFFRMICARPFLRPAKWK 7044
            L  L GPLIE+++ VL++TLA+ICYKSLSNSDGT+ASINEIAAFFRMICA+PFLRPAK+K
Sbjct: 481  LAKLRGPLIEIEQRVLRITLAAICYKSLSNSDGTIASINEIAAFFRMICAKPFLRPAKYK 540

Query: 7043 VYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKYLTVHPNGGTTYSK 6864
            VYDLYG  GAIGLQ YMRSRWA +V FYWANIGL+WFR N K YQK+LT  P+G  TY  
Sbjct: 541  VYDLYGEGGAIGLQKYMRSRWAHHVRFYWANIGLLWFRSNYKFYQKFLTAQPDGHGTYKS 600

Query: 6863 LMQNWGVVCSEVSLGALKLKKTDNFSWLRC-----------------------GGRKVPE 6753
            LM  W  V  EV+       KT N+SWLRC                       GGRK  E
Sbjct: 601  LMHPWSKVMHEVTNHQFHSSKTSNYSWLRCERSTDKPTETCGVHGGARPEAVGGGRKKAE 660

Query: 6752 CTQAEETNVPPPEEKEANTES----VNEPHFSSEP--PPMYEYKEETSATREVKCSCGLI 6591
               +     P  ++ E   +     V+E      P   P   + EE   T      C ++
Sbjct: 661  SKGSAGGEDPKSDQGEGKAQGEERPVDEAAHGEWPFHRPQAYFNEEKGCTHGGSAPCSVV 720

Query: 6590 ITIEKDPSASLHKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTLLGI 6411
            ++I  D +  LHKF      +NR AGFYSK+G GY YNGG HQSLNWP W++ WM L+GI
Sbjct: 721  LSIRNDGATRLHKFPNAGPAQNRYAGFYSKNGVGYSYNGGEHQSLNWPGWISVWMRLVGI 780

Query: 6410 PEEYNCCLVQRYDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDGVNF 6231
            PE YNCCLVQRYD    IG+HSDDE+CF+ G P++TVNIEG A F   CK  +  +  +F
Sbjct: 781  PEIYNCCLVQRYDENAKIGMHSDDEECFVTGGPIYTVNIEGRATFMTTCKEGKTKEITSF 840

Query: 6230 ALNSGEYFEMPRGFQETHKHGVGSTSKGRLSVTFRIMR----DERETPETHSGTNGNHDA 6063
             L  G+ FEMP GFQETHKH V  TSK RLSVTFR+M+    DE++  E    + G    
Sbjct: 841  ELGPGDLFEMPGGFQETHKHAVFETSKDRLSVTFRLMKQICQDEQKDHEETDTSGGKKAG 900

Query: 6062 EPEGGANSPKNETHFENDEEQSNSDEANQDATSESDCGHSEEPQEQSGDQRKNRGAEAST 5883
            E E    + +  T  EN +E+   +E  +  +S S   + E  Q   G    N  AE+  
Sbjct: 901  EAE---ETEQPNTEKENPDEEGAGNEEGEHGSSNS--RNKEREQGNDGSDCTNT-AESGA 954

Query: 5882 EGFTRNFNGCKVSVCTGILSHTYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRHDLG 5703
            E FTR+FNGCKVSV    L +TYNT DCGG GNCFWL LANE+G      KKLAL +DLG
Sbjct: 955  EAFTRHFNGCKVSVHAEKLPYTYNTTDCGGNGNCFWLDLANELGLCPFRGKKLALEYDLG 1014

Query: 5702 SAGANLEALKCAGEGVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRSDRVLHLEL 5523
            SAGAN  A  CAGEGVYAVDEAIACAA  F +AI++YQP+  + T+FEPT+ +RV++LEL
Sbjct: 1015 SAGANETARSCAGEGVYAVDEAIACAASVFSVAIKIYQPELSVMTVFEPTKGERVIYLEL 1074

Query: 5522 KDEHFRIMRIVNGCVIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVFQAL 5343
              EHFR+MRI+NGCV++A++SALNR E E+MHVIEENCD  MV  LW G GVDLGVF +L
Sbjct: 1075 SGEHFRLMRIINGCVVKAMASALNRKESEVMHVIEENCDPMMVTSLWNGEGVDLGVFHSL 1134

Query: 5342 LELFSIKALIFENGKEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKVGVK 5163
            LELFSIKALIFE  +EVLYNREGRF ASFEI GDHIEH  RKK AC  LFEECG+   VK
Sbjct: 1135 LELFSIKALIFEGSREVLYNREGRFEASFEIKGDHIEHVHRKKGACNALFEECGKTHEVK 1194

Query: 5162 AESLELLNKAGTNIRYQSTLARARRLADSLCAGATGVVSSSLFNKRPNL-AGKFRVNTEV 4986
            AESLELLN+AGT + Y+STLARARRLADSLC+G TGVVSSSLFNK+PNL   +FR   E 
Sbjct: 1195 AESLELLNRAGTLLNYESTLARARRLADSLCSGTTGVVSSSLFNKKPNLFPVQFREKNES 1254

Query: 4985 LGRDVLAVIGTFGSGKSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVAR-XXXXX 4809
            L RDVLAVIGT GSGKSTILKNFFKINLGRKVLYVSPR+ALL EF   VCG +R      
Sbjct: 1255 LSRDVLAVIGTLGSGKSTILKNFFKINLGRKVLYVSPRRALLNEFQRGVCGCSRNQEERK 1314

Query: 4808 XXXXXXQENWDFMTFESFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHIVVA 4629
                  QENWDFMTFE+FIL CS LP+GMAV+LDEIQLYPPGYLDM+CYL   GVH++VA
Sbjct: 1315 AARKKGQENWDFMTFETFILKCSNLPSGMAVVLDEIQLYPPGYLDMICYLTKKGVHLIVA 1374

Query: 4628 GDPAQSDYDSEKDRVWLHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPC-TFNIPK 4452
            GDP QSDYD+E+DR WL  +  D  +LL GQ YK+   S R +N  F GRLPC       
Sbjct: 1375 GDPCQSDYDNERDRAWLSTMRSDVEQLLDGQSYKFNVQSHRFKNENFRGRLPCEMIESGS 1434

Query: 4451 TSDADEDFEVRGGIEIIHKIEAKWKECYLVSSFEEKRLVE--YYQDEKGKREEKVLTFGE 4278
                 E+  +  G E + +I  ++   +LVSSF+EK+++E  +  DE    + KV TFGE
Sbjct: 1435 VEMLSEEHLLYTGCEELVQIMEEYSRVFLVSSFDEKKIIETHFPMDE----QRKVYTFGE 1490

Query: 4277 STGLTFNYGCILITQSSEKTNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRALGR 4098
            STG++F  G I+IT  S  T+E+ W+TALSRF ++ICF+N      + L  +Y+ RALG 
Sbjct: 1491 STGVSFRVGTIIITDVSAATSEKHWLTALSRFSENICFVNLLNTDWNGLFELYKHRALGH 1550

Query: 4097 FLGKRADVEDL 4065
            FL +RA ++DL
Sbjct: 1551 FLSQRAQLKDL 1561



 Score =  665 bits (1717), Expect = 0.0
 Identities = 335/481 (69%), Positives = 386/481 (80%)
 Frame = -1

Query: 4044 GDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEARE 3865
            G P LK MI L + ED          + +E+   T L +  LE VRAR   KI++ EARE
Sbjct: 1592 GGPLLKCMIVLGRGEDAQEVYLLEE-VMQEDLIVTRLHETVLEGVRARGGIKIMSNEARE 1650

Query: 3864 VRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPLV 3685
            VRMGDIVSEQF D++ K+ G  LTNAAERFE IYPRHR+SDTVTF+MAV+KRLRFS+P V
Sbjct: 1651 VRMGDIVSEQFTDDYPKDLGVNLTNAAERFETIYPRHRASDTVTFIMAVKKRLRFSRPAV 1710

Query: 3684 EVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIRS 3505
            E  KL+ AK YG  LL +FLK +PLK   +  +M +AK +FE KK SKSAA IENH+ RS
Sbjct: 1711 ERAKLQEAKLYGKFLLNEFLKKIPLKQAHNAAMMERAKFDFEEKKTSKSAATIENHAGRS 1770

Query: 3504 TRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRESL 3325
             RDWLID+G IFSKSQ+CTKF+ RF  AKAAQSIVCFQH+VL RFAPYMRY E KL E L
Sbjct: 1771 CRDWLIDVGLIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRFAPYMRYNEAKLHEVL 1830

Query: 3324 PDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQS 3145
            P RFYIHSGKGLEEL+ WV    F+G+CTESDYEAFDASQDQY+VAFELALM YLGLP+ 
Sbjct: 1831 PSRFYIHSGKGLEELNEWVIKGKFEGICTESDYEAFDASQDQYVVAFELALMEYLGLPRD 1890

Query: 3144 LIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGDD 2965
            LI DY +IK H GSKLG+FAIMRFSGEASTFLFNTMANMLFTF+RYNI ++++ICFAGDD
Sbjct: 1891 LIEDYAFIKCHFGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYNIRDNEHICFAGDD 1950

Query: 2964 MCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAKE 2785
            MCAS +L + KE+E FL+KLKLKAKV F  KPTFCGW+L PDGIYKKPQLVLERMCIAKE
Sbjct: 1951 MCASERLCIKKEHEGFLNKLKLKAKVFFVDKPTFCGWHLCPDGIYKKPQLVLERMCIAKE 2010

Query: 2784 TNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVYG 2605
             NNL NC+DNYAIEVSYAYK+GE+AVNRMDEEEL A YNCVRII+KN+ LL+S++   Y 
Sbjct: 2011 KNNLANCLDNYAIEVSYAYKLGERAVNRMDEEELEAAYNCVRIIIKNKKLLKSDILGFYS 2070

Query: 2604 N 2602
            N
Sbjct: 2071 N 2071


>ref|YP_001086452.2| polyprotein [Chrysanthemum virus B]
 emb|CAM35753.2| polyprotein [Chrysanthemum virus B]
          Length = 2082

 Score = 1822 bits (4720), Expect = 0.0
 Identities = 935/1575 (59%), Positives = 1120/1575 (71%), Gaps = 39/1575 (2%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            MALTYRSP+ + +  +D S+ + IA+T+A ++++ E  NF  FNY + P   +HLI AGI
Sbjct: 1    MALTYRSPMEENVGAYDSSVQAAIASTSANYHREAEVSNFQFFNYYLRPIAKRHLIEAGI 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSP+S VPHSH ACKTLEN++LY VLP  +DN F+FVGIK  KL  LK R+   + +  
Sbjct: 61   YLSPYSAVPHSHAACKTLENHLLYNVLPPLVDNRFHFVGIKQSKLEFLKLRNSKLSTISK 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            INR+VTS DK RY SDFV + SKPH G  RH + +E PTLRDL+P L  R  K LFLHDE
Sbjct: 121  INRFVTSADKARYGSDFVKKVSKPHVGFKRHELQVETPTLRDLLPCLKEREAKYLFLHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            LHYW  ++L + LEV+QP+++LGT+VYPPELL GS +SLN WCY YEVK +   FYPDGV
Sbjct: 181  LHYWSKEDLISLLEVLQPEMMLGTMVYPPELLFGSNRSLNPWCYAYEVKKKNFLFYPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
            R+EGYEQPLNGG+LLECGKI L DGT+Y VDIL SKFAHHL+S+TRGEAAGP+MRS+GPF
Sbjct: 241  RSEGYEQPLNGGYLLECGKITLVDGTVYKVDILCSKFAHHLVSITRGEAAGPTMRSFGPF 300

Query: 7772 EATACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 7593
            EATACNGLDPL RDVSCSFPI YEVVSK+YRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI
Sbjct: 301  EATACNGLDPLTRDVSCSFPIPYEVVSKVYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 360

Query: 7592 VFEQEFSKLV-ISTNSIKTMISADRLKIFMGKYLSRL--PKVIAERFDTVKEISLHEFIK 7422
            VF QE  K      +S    +    LKIFMG+    L  PK++A+ F+TV EISLHEFIK
Sbjct: 361  VFVQEILKSCDRHQHSENHGLVQTGLKIFMGQVTLELSCPKILADVFETVLEISLHEFIK 420

Query: 7421 NLEPFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGY 7242
            NLEPFTVDV LKE+KWNNVWTLELKDDG+ADE LDP+RM++++FG G Y A+PDR SAGY
Sbjct: 421  NLEPFTVDVQLKELKWNNVWTLELKDDGLADEFLDPVRMIEERFGRGEYVAVPDRTSAGY 480

Query: 7241 YMTREKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFFRMICARPFL 7062
            Y+ +  L  L GPLIE+++ VL++TLA+ICYKSLSNSDGT+ASINEIAAFFRMICA+PFL
Sbjct: 481  YLAKPSLAKLRGPLIEIEQRVLRITLAAICYKSLSNSDGTIASINEIAAFFRMICAKPFL 540

Query: 7061 RPAKWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKYLTVHPNG 6882
            RPAK+KVYDLYG  GAIGLQ YMRSRWA +V FYWANIGL+WFR N K YQK+LT  P+G
Sbjct: 541  RPAKYKVYDLYGEGGAIGLQKYMRSRWAHHVRFYWANIGLLWFRSNYKFYQKFLTAQPDG 600

Query: 6881 GTTYSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRC-----------------------G 6771
              TY  LM  W  V  EV+       KT N+SWLRC                       G
Sbjct: 601  HGTYKSLMHPWSKVMHEVTNHQFHSSKTSNYSWLRCERSTDKPTETCGVHGGARSEAVGG 660

Query: 6770 GRKVPECTQAEETNVPPPEEKEANTESVNEP---HFSSEPP---PMYEYKEETSATREVK 6609
            GRK  E   +     P  ++ E   +    P       E P   P   + EE   T    
Sbjct: 661  GRKKAESKGSAGVEDPKSDQGEGKDQGEERPVDEAAHGELPFHRPQAYFNEEKGCTHGGS 720

Query: 6608 CSCGLIITIEKDPSASLHKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSW 6429
              C ++++I  D +  LHKF      +NR AGFYSK+G GY YNGG HQSLNWP W++ W
Sbjct: 721  GPCSVVLSIRNDGATRLHKFPNAGPAQNRYAGFYSKNGVGYSYNGGEHQSLNWPGWISVW 780

Query: 6428 MTLLGIPEEYNCCLVQRYDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRH 6249
            M L+GIPE YNCCLVQRYD    IG+HSDDE+CF+ G P++TVNIEG A F   CK  + 
Sbjct: 781  MRLVGIPEIYNCCLVQRYDENAKIGMHSDDEECFVTGGPIYTVNIEGRATFMTTCKEGKT 840

Query: 6248 SDGVNFALNSGEYFEMPRGFQETHKHGVGSTSKGRLSVTFRIMR----DERETPETHSGT 6081
             +  +F L  G+ FEMP GFQETHKH V  TSK RLSVTFR+M+    DE++  E    +
Sbjct: 841  KEITSFELGPGDLFEMPGGFQETHKHAVFETSKDRLSVTFRLMKQICQDEQKDHEETDTS 900

Query: 6080 NGNHDAEPEGGANSPKNETHFENDEEQSNSDEANQDATSESDCGHSEEPQEQSGDQRKNR 5901
             G    E E    + +  T  EN +E+   +E  +  +S S   + E  Q   G    N 
Sbjct: 901  GGKKAGEAE---ETEQPNTEKENPDEEGAGNEEGEHGSSNS--RNKEREQGNDGSDCTNT 955

Query: 5900 GAEASTEGFTRNFNGCKVSVCTGILSHTYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLA 5721
             AE+  E FTR+FNGCKVSV    L +TYNT DCGG GNCFWLCLANE+G      KKLA
Sbjct: 956  -AESGAEAFTRHFNGCKVSVHAEKLPYTYNTTDCGGNGNCFWLCLANELGLCPFRGKKLA 1014

Query: 5720 LRHDLGSAGANLEALKCAGEGVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRSDR 5541
            L +DLGSAGAN  A  CAGEGVYAVDEAIACAA  F++AI++YQP+  + T+FEPT+ +R
Sbjct: 1015 LEYDLGSAGANETARSCAGEGVYAVDEAIACAASVFRVAIKIYQPELSVMTVFEPTKGER 1074

Query: 5540 VLHLELKDEHFRIMRIVNGCVIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDL 5361
            V++LEL  EHFR+MRI+NGCV++A++SALNR E E+MHVIEENCD  MV  LW G GVDL
Sbjct: 1075 VIYLELSGEHFRLMRIINGCVVKAMASALNRKESEVMHVIEENCDPMMVTSLWNGEGVDL 1134

Query: 5360 GVFQALLELFSIKALIFENGKEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECG 5181
            GVF +LLELFSIKALIFE  +EVLYNREGRF ASFEI GDHIEH  RKK AC  LFEECG
Sbjct: 1135 GVFHSLLELFSIKALIFEGSREVLYNREGRFEASFEIKGDHIEHVHRKKGACNALFEECG 1194

Query: 5180 QKVGVKAESLELLNKAGTNIRYQSTLARARRLADSLCAGATGVVSSSLFNKRPNL-AGKF 5004
            +   VKAESLELLN+AGT + Y+STLARARRLADSLC+G TGVVSSSLFNK+PNL   +F
Sbjct: 1195 KTHEVKAESLELLNRAGTLLNYESTLARARRLADSLCSGTTGVVSSSLFNKKPNLFPVQF 1254

Query: 5003 RVNTEVLGRDVLAVIGTFGSGKSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVAR 4824
            R   E L RDVLAVIGT GSGKSTILKNFFKINLGRKVLYVSPR+ALL EF   VCG +R
Sbjct: 1255 REKNESLSRDVLAVIGTLGSGKSTILKNFFKINLGRKVLYVSPRRALLNEFQRGVCGCSR 1314

Query: 4823 -XXXXXXXXXXXQENWDFMTFESFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDG 4647
                        QENWDFMTFE+FIL CS LP+GMAV+LDEIQLYPPGYLDM+CYL   G
Sbjct: 1315 NQEERKAARKKGQENWDFMTFETFILKCSNLPSGMAVVLDEIQLYPPGYLDMICYLTKKG 1374

Query: 4646 VHIVVAGDPAQSDYDSEKDRVWLHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCT 4467
            VH++VAGDP QSDYD+E+DR WL  +  D  +LL GQ YK+   S R  N  F GRLPC 
Sbjct: 1375 VHLIVAGDPCQSDYDNERDRAWLSTMRSDVEQLLEGQSYKFNVQSHRFNNENFRGRLPCE 1434

Query: 4466 FNIPKTSDAD-EDFEVRGGIEIIHKIEAKWKECYLVSSFEEKRLVEYYQDEKGKREEKVL 4290
                  ++   E+  +  G E +  I  ++ + +LVSSFEEK+++E +     +R  KV 
Sbjct: 1435 ITEKNVAEPRLEEHLLYTGCEELVLIMDEYSKVFLVSSFEEKKIIETHFPVCEQR--KVY 1492

Query: 4289 TFGESTGLTFNYGCILITQSSEKTNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDR 4110
            TFGESTGL F  G I+IT  S  T+E+RW+TALSRF  ++CF+N  G   + L  +Y+ R
Sbjct: 1493 TFGESTGLNFRVGTIIITNVSAATSEKRWLTALSRFSDNVCFVNLLGTDWNGLFGLYKHR 1552

Query: 4109 ALGRFLGKRADVEDL 4065
            ALG FL KRA ++DL
Sbjct: 1553 ALGHFLSKRAQLKDL 1567



 Score =  687 bits (1772), Expect = 0.0
 Identities = 343/481 (71%), Positives = 390/481 (81%)
 Frame = -1

Query: 4044 GDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEARE 3865
            GDPWLK MIDL Q ED          + +EEWFKTHLPQ +LE VRARWVHKI+ KEARE
Sbjct: 1598 GDPWLKCMIDLGQTEDVEEVELLEE-VMQEEWFKTHLPQADLEGVRARWVHKIMLKEARE 1656

Query: 3864 VRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPLV 3685
            VRMGDIVSEQF D++ KE G  LTNAAERFE IYPRHR+SDTVTF+MAV+KRLRFS+P V
Sbjct: 1657 VRMGDIVSEQFTDDYPKELGTNLTNAAERFETIYPRHRASDTVTFIMAVKKRLRFSRPAV 1716

Query: 3684 EVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIRS 3505
            E  KL+ AK YG  LL +FLK VPLK   +  +M +AK +FE KK SKSA IIENH+ RS
Sbjct: 1717 EKAKLQEAKLYGQFLLNEFLKKVPLKQAHNTTMMERAKFDFEEKKTSKSAVIIENHAGRS 1776

Query: 3504 TRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRESL 3325
             RDW+I++G IFSKSQ+CTKF+ RF  AKAAQSIVCFQH+VL RFAPYMRYIE KL E+L
Sbjct: 1777 CRDWMIEVGLIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRFAPYMRYIEAKLHEAL 1836

Query: 3324 PDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQS 3145
            P RFYIHSGKGL+EL+ WV    F+G+CTESDYEAFDASQDQYIVAFELALM YLGLP+ 
Sbjct: 1837 PSRFYIHSGKGLDELNEWVIKGKFEGICTESDYEAFDASQDQYIVAFELALMEYLGLPRD 1896

Query: 3144 LIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGDD 2965
            LI DY +IK HLGSKLG+FAIMRFSGEASTFLFNTMA MLFTF+RYNI +S++I   GDD
Sbjct: 1897 LIEDYAFIKCHLGSKLGNFAIMRFSGEASTFLFNTMAIMLFTFLRYNIKDSEHINSIGDD 1956

Query: 2964 MCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAKE 2785
            MCAS    + KE+E FLSKLKLKAKV F AKPT CGW+L  DGIYKKPQLVLERM  AKE
Sbjct: 1957 MCASEPPCIKKEHEGFLSKLKLKAKVFFLAKPTLCGWHLCSDGIYKKPQLVLERMGSAKE 2016

Query: 2784 TNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVYG 2605
             NNL NC+DNYAIEVSYAY + E+AVNRMDEEEL A YNCVRII+KN+ LL+S++   Y 
Sbjct: 2017 KNNLANCLDNYAIEVSYAYNLRERAVNRMDEEELEAAYNCVRIIIKNKKLLKSDILSFYS 2076

Query: 2604 N 2602
            +
Sbjct: 2077 S 2077


>emb|CAK97712.1| polyprotein, partial [Chrysanthemum virus B]
          Length = 2079

 Score = 1817 bits (4707), Expect = 0.0
 Identities = 932/1572 (59%), Positives = 1117/1572 (71%), Gaps = 39/1572 (2%)
 Frame = -2

Query: 8663 TYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGIYLS 8484
            TYRSP+ + +  +D S+ + IA+T+A ++++ E  NF  FNY + P   +HLI AGIYLS
Sbjct: 1    TYRSPMEENVGAYDSSVQAAIASTSANYHREAEVSNFQFFNYYLRPIAKRHLIEAGIYLS 60

Query: 8483 PFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQCINR 8304
            P+S VPHSH ACKTLEN++LY VLP  +DN F+FVGIK  KL  LK R+   + +  INR
Sbjct: 61   PYSAVPHSHAACKTLENHLLYNVLPPLVDNRFHFVGIKQSKLEFLKLRNSKLSTISKINR 120

Query: 8303 YVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDELHY 8124
            +VTS DK RY SDFV + SKPH G  RH + +E PTLRDL+P L  R  K LFLHDELHY
Sbjct: 121  FVTSADKARYGSDFVKKVSKPHVGFKRHELQVETPTLRDLLPCLKEREAKYLFLHDELHY 180

Query: 8123 WKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGVRAE 7944
            W  ++L + LEV+QP+++LGT+VYPPELL GS +SLN WCY YEVK +   FYPDGVR+E
Sbjct: 181  WSKEDLISLLEVLQPEMMLGTMVYPPELLFGSNRSLNPWCYAYEVKKKNFLFYPDGVRSE 240

Query: 7943 GYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPFEAT 7764
            GYEQPLNGG+LLECGKI L DGT+Y VDIL SKFAHHL+S+TRGEAAGP+MRS+GPFEAT
Sbjct: 241  GYEQPLNGGYLLECGKITLVDGTVYKVDILCSKFAHHLVSITRGEAAGPTMRSFGPFEAT 300

Query: 7763 ACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVFE 7584
            ACNGLDPL RDVSCSFPI YEVVSK+YRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVF 
Sbjct: 301  ACNGLDPLTRDVSCSFPIPYEVVSKVYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVFV 360

Query: 7583 QEFSKLV-ISTNSIKTMISADRLKIFMGKYLSRL--PKVIAERFDTVKEISLHEFIKNLE 7413
            QE  K      +S    +    LKIFMG+    L  PK++A+ F+TV EISLHEFIKNLE
Sbjct: 361  QEILKSCDRHQHSENHGLVQTGLKIFMGQVTLELSCPKILADVFETVLEISLHEFIKNLE 420

Query: 7412 PFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGYYMT 7233
            PFTVDV LKE+KWNNVWTLELKDDG+ADE LDP+RM++++FG G Y A+PDR SAGYY+ 
Sbjct: 421  PFTVDVQLKELKWNNVWTLELKDDGLADEFLDPVRMIEERFGRGEYVAVPDRTSAGYYLA 480

Query: 7232 REKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFFRMICARPFLRPA 7053
            +  L  L GPLIE+++ VL++TLA+ICYKSLSNSDGT+ASINEIAAFFRMICA+PFLRPA
Sbjct: 481  KPSLAKLRGPLIEIEQRVLRITLAAICYKSLSNSDGTIASINEIAAFFRMICAKPFLRPA 540

Query: 7052 KWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKYLTVHPNGGTT 6873
            K+KVYDLYG  GAIGLQ YMRSRWA +V FYWANIGL+WFR N K YQK+LT  P+G  T
Sbjct: 541  KYKVYDLYGEGGAIGLQKYMRSRWAHHVRFYWANIGLLWFRSNYKFYQKFLTAQPDGHGT 600

Query: 6872 YSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRC-----------------------GGRK 6762
            Y  LM  W  V  EV+       KT N+SWLRC                       GGRK
Sbjct: 601  YKSLMHPWSKVMHEVTNHQFHSSKTSNYSWLRCERSTDKPTETCGVHGGARSEAVGGGRK 660

Query: 6761 VPECTQAEETNVPPPEEKEANTESVNEP---HFSSEPP---PMYEYKEETSATREVKCSC 6600
              E   +     P  ++ E   +    P       E P   P   + EE   T      C
Sbjct: 661  KAESKGSAGVEDPKSDQGEGKDQGEERPVDEAAHGELPFHRPQAYFNEEKGCTHGGSGPC 720

Query: 6599 GLIITIEKDPSASLHKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTL 6420
             ++++I  D +  LHKF      +NR AGFYSK+G GY YNGG HQSLNWP W++ WM L
Sbjct: 721  SVVLSIRNDGATRLHKFPNAGPAQNRYAGFYSKNGVGYSYNGGEHQSLNWPGWISVWMRL 780

Query: 6419 LGIPEEYNCCLVQRYDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDG 6240
            +GIPE YNCCLVQRYD    IG+HSDDE+CF+ G P++TVNIEG A F   CK  +  + 
Sbjct: 781  VGIPEIYNCCLVQRYDENAKIGMHSDDEECFVTGGPIYTVNIEGRATFMTTCKEGKTKEI 840

Query: 6239 VNFALNSGEYFEMPRGFQETHKHGVGSTSKGRLSVTFRIMR----DERETPETHSGTNGN 6072
             +F L  G+ FEMP GFQETHKH V  TSK RLSVTFR+M+    DE++  E    + G 
Sbjct: 841  TSFELGPGDLFEMPGGFQETHKHAVFETSKDRLSVTFRLMKQICQDEQKDHEETDTSGGK 900

Query: 6071 HDAEPEGGANSPKNETHFENDEEQSNSDEANQDATSESDCGHSEEPQEQSGDQRKNRGAE 5892
               E E    + +  T  EN +E+   +E  +  +S S   + E  Q   G    N  AE
Sbjct: 901  KAGEAE---ETEQPNTEKENPDEEGAGNEEGEHGSSNS--RNKEREQGNDGSDCTNT-AE 954

Query: 5891 ASTEGFTRNFNGCKVSVCTGILSHTYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRH 5712
            +  E FTR+FNGCKVSV    L +TYNT DCGG GNCFWLCLANE+G      KKLAL +
Sbjct: 955  SGAEAFTRHFNGCKVSVHAEKLPYTYNTTDCGGNGNCFWLCLANELGLCPFRGKKLALEY 1014

Query: 5711 DLGSAGANLEALKCAGEGVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRSDRVLH 5532
            DLGSAGAN  A  CAGEGVYAVDEAIACAA  F++AI++YQP+  + T+FEPT+ +RV++
Sbjct: 1015 DLGSAGANETARSCAGEGVYAVDEAIACAASVFRVAIKIYQPELSVMTVFEPTKGERVIY 1074

Query: 5531 LELKDEHFRIMRIVNGCVIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVF 5352
            LEL  EHFR+MRI+NGCV++A++SALNR E E+MHVIEENCD  MV  LW G GVDLGVF
Sbjct: 1075 LELSGEHFRLMRIINGCVVKAMASALNRKESEVMHVIEENCDPMMVTSLWNGEGVDLGVF 1134

Query: 5351 QALLELFSIKALIFENGKEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKV 5172
             +LLELFSIKALIFE  +EVLYNREGRF ASFEI GDHIEH  RKK AC  LFEECG+  
Sbjct: 1135 HSLLELFSIKALIFEGSREVLYNREGRFEASFEIKGDHIEHVHRKKGACNALFEECGKTH 1194

Query: 5171 GVKAESLELLNKAGTNIRYQSTLARARRLADSLCAGATGVVSSSLFNKRPNL-AGKFRVN 4995
             VKAESLELLN+AGT + Y+STLARARRLADSLC+G TGVVSSSLFNK+PNL   +FR  
Sbjct: 1195 EVKAESLELLNRAGTLLNYESTLARARRLADSLCSGTTGVVSSSLFNKKPNLFPVQFREK 1254

Query: 4994 TEVLGRDVLAVIGTFGSGKSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVAR-XX 4818
             E L RDVLAVIGT GSGKSTILKNFFKINLGRKVLYVSPR+ALL EF   VCG +R   
Sbjct: 1255 NESLSRDVLAVIGTLGSGKSTILKNFFKINLGRKVLYVSPRRALLNEFQRGVCGCSRNQE 1314

Query: 4817 XXXXXXXXXQENWDFMTFESFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHI 4638
                     QENWDFMTFE+FIL CS LP+GMAV+LDEIQLYPPGYLDM+CYL   GVH+
Sbjct: 1315 ERKAARKKGQENWDFMTFETFILKCSNLPSGMAVVLDEIQLYPPGYLDMICYLTKKGVHL 1374

Query: 4637 VVAGDPAQSDYDSEKDRVWLHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCTFNI 4458
            +VAGDP QSDYD+E+DR WL  +  D  +LL GQ YK+   S R  N  F GRLPC    
Sbjct: 1375 IVAGDPCQSDYDNERDRAWLSTMRSDVEQLLEGQSYKFNVQSHRFNNENFRGRLPCEITE 1434

Query: 4457 PKTSDAD-EDFEVRGGIEIIHKIEAKWKECYLVSSFEEKRLVEYYQDEKGKREEKVLTFG 4281
               ++   E+  +  G E +  I  ++ + +LVSSFEEK+++E +     +R  KV TFG
Sbjct: 1435 KNVAEPRLEEHLLYTGCEELVLIMDEYSKVFLVSSFEEKKIIETHFPVCEQR--KVYTFG 1492

Query: 4280 ESTGLTFNYGCILITQSSEKTNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRALG 4101
            ESTGL F  G I+IT  S  T+E+RW+TALSRF  ++CF+N  G   + L  +Y+ RALG
Sbjct: 1493 ESTGLNFRVGTIIITNVSAATSEKRWLTALSRFSDNVCFVNLLGTDWNGLFGLYKHRALG 1552

Query: 4100 RFLGKRADVEDL 4065
             FL KRA ++DL
Sbjct: 1553 HFLSKRAQLKDL 1564



 Score =  687 bits (1772), Expect = 0.0
 Identities = 343/481 (71%), Positives = 390/481 (81%)
 Frame = -1

Query: 4044 GDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEARE 3865
            GDPWLK MIDL Q ED          + +EEWFKTHLPQ +LE VRARWVHKI+ KEARE
Sbjct: 1595 GDPWLKCMIDLGQTEDVEEVELLEE-VMQEEWFKTHLPQADLEGVRARWVHKIMLKEARE 1653

Query: 3864 VRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPLV 3685
            VRMGDIVSEQF D++ KE G  LTNAAERFE IYPRHR+SDTVTF+MAV+KRLRFS+P V
Sbjct: 1654 VRMGDIVSEQFTDDYPKELGTNLTNAAERFETIYPRHRASDTVTFIMAVKKRLRFSRPAV 1713

Query: 3684 EVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIRS 3505
            E  KL+ AK YG  LL +FLK VPLK   +  +M +AK +FE KK SKSA IIENH+ RS
Sbjct: 1714 EKAKLQEAKLYGQFLLNEFLKKVPLKQAHNTTMMERAKFDFEEKKTSKSAVIIENHAGRS 1773

Query: 3504 TRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRESL 3325
             RDW+I++G IFSKSQ+CTKF+ RF  AKAAQSIVCFQH+VL RFAPYMRYIE KL E+L
Sbjct: 1774 CRDWMIEVGLIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRFAPYMRYIEAKLHEAL 1833

Query: 3324 PDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQS 3145
            P RFYIHSGKGL+EL+ WV    F+G+CTESDYEAFDASQDQYIVAFELALM YLGLP+ 
Sbjct: 1834 PSRFYIHSGKGLDELNEWVIKGKFEGICTESDYEAFDASQDQYIVAFELALMEYLGLPRD 1893

Query: 3144 LIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGDD 2965
            LI DY +IK HLGSKLG+FAIMRFSGEASTFLFNTMA MLFTF+RYNI +S++I   GDD
Sbjct: 1894 LIEDYAFIKCHLGSKLGNFAIMRFSGEASTFLFNTMAIMLFTFLRYNIKDSEHINSIGDD 1953

Query: 2964 MCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAKE 2785
            MCAS    + KE+E FLSKLKLKAKV F AKPT CGW+L  DGIYKKPQLVLERM  AKE
Sbjct: 1954 MCASEPPCIKKEHEGFLSKLKLKAKVFFLAKPTLCGWHLCSDGIYKKPQLVLERMGSAKE 2013

Query: 2784 TNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVYG 2605
             NNL NC+DNYAIEVSYAY + E+AVNRMDEEEL A YNCVRII+KN+ LL+S++   Y 
Sbjct: 2014 KNNLANCLDNYAIEVSYAYNLRERAVNRMDEEELEAAYNCVRIIIKNKKLLKSDILSFYS 2073

Query: 2604 N 2602
            +
Sbjct: 2074 S 2074


>emb|CAO78688.1| polyprotein [Chrysanthemum virus B]
          Length = 2078

 Score = 1815 bits (4702), Expect = 0.0
 Identities = 935/1572 (59%), Positives = 1124/1572 (71%), Gaps = 36/1572 (2%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            MALTYRSP+ + +  +D S+ + IA+T+A +Y++ E  NF  FNY + P   +H+I AGI
Sbjct: 1    MALTYRSPMEENVGAYDSSVQAAIASTSANYYREAEVSNFQFFNYYLRPIGKRHIIEAGI 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSP+S VPHSH ACKTLEN++LY VLP  +DN F+FVGIK  KL  LK R+   + +  
Sbjct: 61   YLSPYSAVPHSHAACKTLENHLLYNVLPPLVDNRFHFVGIKQSKLEFLKLRNSKLSTISK 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            INR+VTS DK RY SDFV + SKPH G  RH + +E PTLRDL+P L  R  K LFLHDE
Sbjct: 121  INRFVTSADKARYGSDFVKKVSKPHVGFKRHELQVETPTLRDLLPCLKEREAKYLFLHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            LHY   ++L + LEV+QP+++LGT+VYPPELL GS +SLN WCY YEVK +   FYPDGV
Sbjct: 181  LHYLNKEDLISLLEVLQPEMMLGTMVYPPELLFGSNRSLNPWCYAYEVKKKNFLFYPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
            R+EG+EQPLNGG+LLECGKI L DGT+Y VDIL SKFAHHL+S+TRGEAAGP+MRS+GPF
Sbjct: 241  RSEGHEQPLNGGYLLECGKITLVDGTVYKVDILCSKFAHHLVSITRGEAAGPTMRSFGPF 300

Query: 7772 EATACNGL-DPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEE 7596
                 +GL  P  RDVSCSFPI YEVVSK+YRYLKTLRKPDEQSSMAKLTQLLPCPTGEE
Sbjct: 301  N-NGVHGLGSPHTRDVSCSFPIPYEVVSKVYRYLKTLRKPDEQSSMAKLTQLLPCPTGEE 359

Query: 7595 IVFEQEFSKLV-ISTNSIKTMISADRLKIFMGKYLSRL--PKVIAERFDTVKEISLHEFI 7425
            IVF QE  K      +S    +    LKIFMG+    L  PK++A+ F+TV EISLHEFI
Sbjct: 360  IVFVQEILKSCDRHQHSENHGLVQTGLKIFMGQVTLELSCPKILADVFETVLEISLHEFI 419

Query: 7424 KNLEPFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAG 7245
            KNLEPFTVDV LKE+KWNNVWTLELKDDG+ADE LDP+RM++++FG G Y A+PDR SAG
Sbjct: 420  KNLEPFTVDVQLKELKWNNVWTLELKDDGLADEFLDPVRMIEERFGRGEYVAVPDRTSAG 479

Query: 7244 YYMTREKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFFRMICARPF 7065
            YY+ +  L  L GPLIE+++ VL++TLA+ICYKSLSNSDGT+ASINEIAAFFRMICA+PF
Sbjct: 480  YYLAKPSLAKLRGPLIEIEQRVLRITLAAICYKSLSNSDGTIASINEIAAFFRMICAKPF 539

Query: 7064 LRPAKWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKYLTVHPN 6885
            LRPAK+KVYDLYG  GAIGLQ YMRSRWA +V FYWANIGL+WFR N K YQK+LT  P+
Sbjct: 540  LRPAKYKVYDLYGEGGAIGLQKYMRSRWAHHVRFYWANIGLLWFRSNYKFYQKFLTAQPD 599

Query: 6884 GGTTYSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRCG---------------------- 6771
            G  TY  LM  W  V  EV+       KT N+SWLRC                       
Sbjct: 600  GHGTYKSLMHPWSKVMHEVTNHQFHSSKTSNYSWLRCERSTDKPTETCGVHGGARSGRVV 659

Query: 6770 GRKVPECTQA--EETNVPPPEEKEANTE-SVNEPHFSSEPPPMYEYKEETSATREVKCSC 6600
            GRK      A  E+      E K+   E  V+E      PP    Y  E      V+C C
Sbjct: 660  GRKAESKGSAGGEDPKSDQGEGKDQGEERPVDEAAHGGCPPQPQAYSNEEKGAHTVQCPC 719

Query: 6599 GLIITIEKDPSASLHKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTL 6420
             ++++I  D +  LHKFQTPDRLKNR AGFYSK+G GY YNGG HQSLNWP W++ WM L
Sbjct: 720  SVVLSIRNDGATRLHKFQTPDRLKNRYAGFYSKNGVGYSYNGGEHQSLNWPGWISVWMRL 779

Query: 6419 LGIPEEYNCCLVQRYDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDG 6240
            +GIPE YNCCLVQRYD    IG+HSDDE+CF+ G P++TVNIEG A F   CK  +  + 
Sbjct: 780  VGIPEIYNCCLVQRYDENAKIGMHSDDEECFVTGGPIYTVNIEGRATFMTTCKEGKTKEI 839

Query: 6239 VNFALNSGEYFEMPRGFQETHKHGVGSTSKGRLSVTFRIMR----DERETPETHSGTNGN 6072
             +F L  G+ FEMP GFQETHKH V  TSK RLSVTFR+M+    DE++  E    + G 
Sbjct: 840  TSFELGPGDLFEMPGGFQETHKHAVFETSKDRLSVTFRLMKQICQDEQKDHEETDTSGGK 899

Query: 6071 HDAEPEGGANSPKNETHFENDEEQSNSDEANQDATSESDCGHSEEPQEQSGDQRKNRGAE 5892
               E E    + +  T  EN +E+   +E  +  +S S   + E  Q   G    N  AE
Sbjct: 900  KAGEAE---ETEQPNTEKENPDEEGAGNEEGEHGSSNS--RNKEREQGNDGSDCTNT-AE 953

Query: 5891 ASTEGFTRNFNGCKVSVCTGILSHTYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRH 5712
            +  E FTR+FNGCKVSV    L +TYNT DCGG GNCFWLCLANE+G      KKLAL +
Sbjct: 954  SGAEAFTRHFNGCKVSVHAEKLPYTYNTTDCGGNGNCFWLCLANELGLCPFRGKKLALEY 1013

Query: 5711 DLGSAGANLEALKCAGEGVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRSDRVLH 5532
            DLGSAGAN  A  CAGEGVYAVDEAIACAA  F++AI++YQP+  + T+FEPT+ +RV++
Sbjct: 1014 DLGSAGANETARSCAGEGVYAVDEAIACAASVFRVAIKIYQPELSVMTVFEPTKGERVIY 1073

Query: 5531 LELKDEHFRIMRIVNGCVIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVF 5352
            LEL  EHFR+MRI+NGCV++A++SALNR E E+MHVIEENCD  MV  LW G GVDLGVF
Sbjct: 1074 LELSGEHFRLMRIINGCVVKAMASALNRKESEVMHVIEENCDPMMVTSLWNGEGVDLGVF 1133

Query: 5351 QALLELFSIKALIFENGKEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKV 5172
             +LLELFSIKALIFE  +EVLYNREGRF ASFEI GDHIEH  RKK AC  LFEECG+  
Sbjct: 1134 HSLLELFSIKALIFEGSREVLYNREGRFEASFEIKGDHIEHVHRKKGACNALFEECGKTH 1193

Query: 5171 GVKAESLELLNKAGTNIRYQSTLARARRLADSLCAGATGVVSSSLFNKRPNL-AGKFRVN 4995
             VKAESLELLN+AGT + Y+STLARARRLADSLC+G TGVVSSSLFNK+PNL   +FR  
Sbjct: 1194 EVKAESLELLNRAGTLLNYESTLARARRLADSLCSGTTGVVSSSLFNKKPNLFPVQFREK 1253

Query: 4994 TEVLGRDVLAVIGTFGSGKSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVAR-XX 4818
             E L RDVLAVIGT GSGKSTILKNFFKINLGRKVLYVSPR+ALL EF   VCG +R   
Sbjct: 1254 NESLSRDVLAVIGTLGSGKSTILKNFFKINLGRKVLYVSPRRALLNEFQRGVCGCSRNQE 1313

Query: 4817 XXXXXXXXXQENWDFMTFESFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHI 4638
                     QENWDFMTFE+FIL CS LP+GMAV+LDEIQLYPPGYLDM+CYL   GVH+
Sbjct: 1314 ERKAARKKGQENWDFMTFETFILKCSNLPSGMAVVLDEIQLYPPGYLDMICYLTKKGVHL 1373

Query: 4637 VVAGDPAQSDYDSEKDRVWLHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCTFNI 4458
            +VAGDP QSDYD+E+DR WL  +  D  +LL GQ YK+   S R  N  F GRLPC    
Sbjct: 1374 IVAGDPCQSDYDNERDRAWLSTMRSDVEQLLEGQSYKFNVQSHRFNNENFRGRLPCEITG 1433

Query: 4457 PKTSDA-DEDFEVRGGIEIIHKIEAKWKECYLVSSFEEKRLVEYYQDEKGKREEKVLTFG 4281
             + +++  E+  +  G E + +I  ++ + +LVSSFEEK+++E +     +R  KV TFG
Sbjct: 1434 KEVAESLSEEHLLYTGCEELVQIMDEYSKIFLVSSFEEKKIIETHFPISEQR--KVYTFG 1491

Query: 4280 ESTGLTFNYGCILITQSSEKTNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRALG 4101
            ESTGL F  G I+IT  S  T+E+RW+TALSRF ++ICF+N  G   + L  +Y+ RALG
Sbjct: 1492 ESTGLNFKVGTIIITNVSAATSEKRWLTALSRFSENICFVNLLGTDWNGLFGLYKHRALG 1551

Query: 4100 RFLGKRADVEDL 4065
            RFL K+A ++DL
Sbjct: 1552 RFLSKQAQLKDL 1563



 Score =  713 bits (1841), Expect = 0.0
 Identities = 352/481 (73%), Positives = 399/481 (82%)
 Frame = -1

Query: 4044 GDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEARE 3865
            GDPWLK MIDL Q ED          + +EEWFKTHLPQ +LE VRARWVHKI+ KEARE
Sbjct: 1594 GDPWLKCMIDLGQAEDAEEVELLEE-VMQEEWFKTHLPQADLEGVRARWVHKIMLKEARE 1652

Query: 3864 VRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPLV 3685
            VRMG++VSEQF D++ KE G  LTNAAERFE IYPRHR+SDTVTF+MAV+KRLRFS+P V
Sbjct: 1653 VRMGNMVSEQFTDDYPKELGTNLTNAAERFETIYPRHRASDTVTFIMAVKKRLRFSRPAV 1712

Query: 3684 EVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIRS 3505
            E  KL+ AK YG  LL +FLK V LK   +  +M +AK +FE KK SKSAA IENH+ RS
Sbjct: 1713 EKAKLQEAKLYGKFLLNEFLKKVSLKQAHNTTMMERAKFDFEEKKTSKSAATIENHAGRS 1772

Query: 3504 TRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRESL 3325
             RDWLID+G IFSKSQ+CTKF+ RF  AKAAQSIVCFQH+VL RFAPYMRYIE KL E L
Sbjct: 1773 CRDWLIDVGLIFSKSQLCTKFDNRFRIAKAAQSIVCFQHAVLCRFAPYMRYIEAKLHEVL 1832

Query: 3324 PDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQS 3145
            P RFYIHSGKGLEEL+ WV    F+G+CTESDYEAFDASQDQYIVAFELALM YLGLP+ 
Sbjct: 1833 PSRFYIHSGKGLEELNEWVIKGKFEGICTESDYEAFDASQDQYIVAFELALMEYLGLPRD 1892

Query: 3144 LIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGDD 2965
            LI DY +IK HLGSKLG+FAIMRFSGEASTFLFNTMANMLFTF+RYNI +S++ICFAGDD
Sbjct: 1893 LIEDYAFIKCHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYNIRDSEHICFAGDD 1952

Query: 2964 MCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAKE 2785
            +CAS +L + KE+E FL+KLKLKAKV F  KPTFCGW+L PDGIYKKPQLVLERMCIAKE
Sbjct: 1953 LCASERLCIKKEHEGFLNKLKLKAKVFFVDKPTFCGWHLCPDGIYKKPQLVLERMCIAKE 2012

Query: 2784 TNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVYG 2605
             NNL NC+DNYAIEVSYAYK+GE+AVNRMDEEEL A YNCVRII+KN+ LL+S++   Y 
Sbjct: 2013 KNNLANCLDNYAIEVSYAYKLGERAVNRMDEEELEAAYNCVRIIIKNKKLLKSDILGFYS 2072

Query: 2604 N 2602
            N
Sbjct: 2073 N 2073


>emb|CAK54345.1| polyprotein, partial [Chrysanthemum virus B]
          Length = 2075

 Score = 1814 bits (4698), Expect = 0.0
 Identities = 936/1571 (59%), Positives = 1119/1571 (71%), Gaps = 38/1571 (2%)
 Frame = -2

Query: 8663 TYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGIYLS 8484
            TYRSP+ + +  +D S+ + IA+T+A +Y++ E  NF  FNY + P   +HLI AGIYLS
Sbjct: 1    TYRSPMEENVGAYDSSVQAAIASTSANYYREAEVNNFQFFNYYLRPIAKRHLIEAGIYLS 60

Query: 8483 PFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQCINR 8304
            P+S VPHSH ACKTLEN +LY VLP  +DN F+FVGIK  KL  LK R+   + +  INR
Sbjct: 61   PYSAVPHSHAACKTLENLLLYNVLPPLVDNRFHFVGIKQSKLEFLKLRNSKLSTISKINR 120

Query: 8303 YVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDELHY 8124
            +VTS DK RY SDFV + SKPH G  RH + +E PTLRDL+P L  R  K LFLHDELHY
Sbjct: 121  FVTSADKARYGSDFVKKVSKPHVGFKRHELQVETPTLRDLLPCLKEREAKYLFLHDELHY 180

Query: 8123 WKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGVRAE 7944
            W  ++L + LEV+QP+++LGT+VYPPELL GS +SLN WCY YEVK +   FYPDGVR+E
Sbjct: 181  WSKEDLISLLEVLQPEMMLGTMVYPPELLFGSNRSLNPWCYAYEVKKKNFLFYPDGVRSE 240

Query: 7943 GYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPFEAT 7764
            G+EQPLNGG+LLECGKI L DGT+Y VDIL SKFAHHL+S+TRGEAAGP+MRS+GPF   
Sbjct: 241  GHEQPLNGGYLLECGKITLVDGTVYKVDILCSKFAHHLVSITRGEAAGPTMRSFGPFN-N 299

Query: 7763 ACNGL-DPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVF 7587
              +GL  P  RDVSCSFPI YEVVSK+YRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVF
Sbjct: 300  GVHGLGSPHTRDVSCSFPIPYEVVSKVYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVF 359

Query: 7586 EQEFSKLV-ISTNSIKTMISADRLKIFMGKYLSRL--PKVIAERFDTVKEISLHEFIKNL 7416
             QE  K      +S    +    LKIFMG+    L  PK++A+ F+TV EISLHEFIKNL
Sbjct: 360  VQEILKSCDRHQHSENHGLVQTGLKIFMGQVTLELSCPKILADVFETVLEISLHEFIKNL 419

Query: 7415 EPFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGYYM 7236
            EPFTVDV LKE+KWNNVWTLELKDDG+ADE LDP+RM++++FG G Y A+PDR SAGYY+
Sbjct: 420  EPFTVDVQLKELKWNNVWTLELKDDGLADEFLDPVRMIEERFGRGEYVAVPDRTSAGYYL 479

Query: 7235 TREKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFFRMICARPFLRP 7056
             +  L  L GPLIE+++ VL++TLA+ICYKSLSNSDGT+ASINEIAAFFRMICA+PFLRP
Sbjct: 480  AKPSLAKLRGPLIEIEQRVLRITLAAICYKSLSNSDGTIASINEIAAFFRMICAKPFLRP 539

Query: 7055 AKWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKYLTVHPNGGT 6876
            AK+KVYDLYG  GAIGLQ YMRSRWA +V FYWANIGL+WFR N K YQK+LT  P+G  
Sbjct: 540  AKYKVYDLYGEGGAIGLQKYMRSRWAHHVRFYWANIGLLWFRSNYKFYQKFLTAQPDGHG 599

Query: 6875 TYSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRCG----------------------GRK 6762
            TY  LM  W  V  EV+       KT N+SWLRC                       GRK
Sbjct: 600  TYKSLMHPWSKVMHEVTNHQFHSSKTSNYSWLRCERSTDKPTETCGVHGGARSGRVVGRK 659

Query: 6761 VPECTQA--EETNVPPPEEKEANTE-SVNEPHFSSEPPPMYEYKEETSATREVKCSCGLI 6591
                  A  E+      E K+   E  V+E      PP    Y  E      V+C C ++
Sbjct: 660  AESKGSAGGEDPKSDQGEGKDQGEERPVDEAAHGGCPPQPQAYSNEEKGAHTVQCPCSVV 719

Query: 6590 ITIEKDPSASLHKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTLLGI 6411
            ++I  D +  LHKFQTPDRLKNR AGFYSK+G GY YNGG HQSLNWP W++ WM L+GI
Sbjct: 720  LSIRNDGATRLHKFQTPDRLKNRYAGFYSKNGVGYSYNGGEHQSLNWPGWISVWMRLVGI 779

Query: 6410 PEEYNCCLVQRYDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDGVNF 6231
            PE YNCCLVQRYD    IG+HSDDE+CF+ G P++TVNIEG A F   CK  +  +  +F
Sbjct: 780  PEIYNCCLVQRYDENAKIGMHSDDEECFVTGGPIYTVNIEGRATFMTTCKEGKTKEITSF 839

Query: 6230 ALNSGEYFEMPRGFQETHKHGVGSTSKGRLSVTFRIMR----DERETPETHSGTNGNHDA 6063
             L  G+ FEMP GFQETHKH V  TSK RLSVTFR+M+    DE++  E    + G    
Sbjct: 840  ELGPGDLFEMPGGFQETHKHAVFETSKDRLSVTFRLMKQICQDEQKDHEETDTSGGKKAG 899

Query: 6062 EPEGGANSPKNETHFENDEEQSNSDEANQDATSESDCGHSEEPQEQSGDQRKNRGAEAST 5883
            E E    + +  T  EN +E+   +E  +  +S S   + E  Q   G    N  AE+  
Sbjct: 900  EAE---ETEQPNTEKENPDEEGAGNEEGEHGSSNS--RNKEREQGNDGSDCTNT-AESGA 953

Query: 5882 EGFTRNFNGCKVSVCTGILSHTYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRHDLG 5703
            E FTR+FNGCKVSV    L +TYNT DCGG GNCFWLCLANE+G      KKLAL +DLG
Sbjct: 954  EAFTRHFNGCKVSVHAEKLPYTYNTTDCGGNGNCFWLCLANELGLCPFRGKKLALEYDLG 1013

Query: 5702 SAGANLEALKCAGEGVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRSDRVLHLEL 5523
            SAGAN  A  CAGEGVYAVDEAIACAA  F +AI++YQP+  + T+FEPT+ +RV++LEL
Sbjct: 1014 SAGANETARSCAGEGVYAVDEAIACAASVFSVAIKIYQPELSVMTVFEPTKGERVIYLEL 1073

Query: 5522 KDEHFRIMRIVNGCVIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVFQAL 5343
              EHFR+MRI+NGCV++A++SALNR E E+MHVIEENCD  MV  LW G GVDLGVF +L
Sbjct: 1074 SGEHFRLMRIINGCVVKAMASALNRKESEVMHVIEENCDPMMVTSLWNGEGVDLGVFHSL 1133

Query: 5342 LELFSIKALIFENGKEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKVGVK 5163
            LELFSIKALIFE  +EVLYNREGRF ASFEI GDHIEH  RKK AC  LFEECG+   VK
Sbjct: 1134 LELFSIKALIFEGSREVLYNREGRFEASFEIKGDHIEHVHRKKGACNALFEECGKTHEVK 1193

Query: 5162 AESLELLNKAGTNIRYQSTLARARRLADSLCAGATGVVSSSLFNKRPNL-AGKFRVNTEV 4986
            AESLELLN+AGT + YQSTLARARRLADSLC+G TGVVSSSLFNK+PNL   +FR  +E 
Sbjct: 1194 AESLELLNRAGTLLNYQSTLARARRLADSLCSGTTGVVSSSLFNKKPNLFPVQFRNTSEF 1253

Query: 4985 LGRDVLAVIGTFGSGKSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVAR-XXXXX 4809
            L RDVLAVIGT GSGKSTILKNFFKINLGRKVLYVSPR+ALL EF   VCG +R      
Sbjct: 1254 LSRDVLAVIGTLGSGKSTILKNFFKINLGRKVLYVSPRRALLNEFQRGVCGCSRNQEERK 1313

Query: 4808 XXXXXXQENWDFMTFESFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHIVVA 4629
                  QENWDFMTFE+FIL CS LP+GMAV+LDEIQLYPPGYLDM+CYL   GVH++VA
Sbjct: 1314 AARKKGQENWDFMTFETFILKCSNLPSGMAVVLDEIQLYPPGYLDMICYLTKKGVHLIVA 1373

Query: 4628 GDPAQSDYDSEKDRVWLHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPC-TFNIPK 4452
            GDP QSDYD+E+DR WL  +  D  +LL GQ Y++   S R  N+ F GRLPC       
Sbjct: 1374 GDPCQSDYDNERDRAWLSVMRSDVEQLLEGQSYRFNVQSHRFNNANFRGRLPCEMIGADV 1433

Query: 4451 TSDADEDFEVRGGIEIIHKIEAKWKECYLVSSFEEKRLVE--YYQDEKGKREEKVLTFGE 4278
                 E+  +  G E + +I  ++ + +LVSSF+EK+++E  +  DEK     KV TFGE
Sbjct: 1434 AGSPSEEHLLYTGCEELVQIMDEYSKVFLVSSFDEKKIIETHFPMDEK----RKVYTFGE 1489

Query: 4277 STGLTFNYGCILITQSSEKTNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRALGR 4098
            STGL F  G I+IT  S  T+E+RW+TALSRF ++ICF+N  G   + LL +Y+ RALG 
Sbjct: 1490 STGLNFRVGTIIITNVSAATSEKRWLTALSRFSENICFVNLLGTDWNGLLGLYKHRALGH 1549

Query: 4097 FLGKRADVEDL 4065
            FL KRA ++DL
Sbjct: 1550 FLCKRAQLKDL 1560



 Score =  706 bits (1822), Expect = 0.0
 Identities = 349/481 (72%), Positives = 396/481 (82%)
 Frame = -1

Query: 4044 GDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEARE 3865
            GDPWLK MIDL Q ED          + +EEWFKTHLPQ +LE VRARWVHKI+ KEARE
Sbjct: 1591 GDPWLKCMIDLGQTEDVEEVELLEE-VMQEEWFKTHLPQADLEGVRARWVHKIMLKEARE 1649

Query: 3864 VRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPLV 3685
            VRMGDIVSEQF D++ KE G  LTNAAERFE IYPRHR+SDTVTF+MAV+KRLRFS+P V
Sbjct: 1650 VRMGDIVSEQFTDDYPKELGTNLTNAAERFETIYPRHRASDTVTFIMAVKKRLRFSRPAV 1709

Query: 3684 EVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIRS 3505
            E  KL+ AK YG  LL +FLK VPLK   +  +M +AK +FE KK SKSAAIIENH+ RS
Sbjct: 1710 EKAKLQEAKLYGQFLLNEFLKKVPLKQAHNTTMMERAKFDFEEKKTSKSAAIIENHAGRS 1769

Query: 3504 TRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRESL 3325
             RDWLID+G IFSKSQ+CTKF+ RF  AKAAQSIVCFQH+VL RFAPYMRYIE KL E L
Sbjct: 1770 CRDWLIDVGLIFSKSQLCTKFDNRFRVAKAAQSIVCFQHAVLCRFAPYMRYIEAKLHEVL 1829

Query: 3324 PDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQS 3145
            P RFYIHSGKGL+EL+ WV    F+G+CTESDYEAFDAS DQYIVAFELALM YLGLP+ 
Sbjct: 1830 PSRFYIHSGKGLDELNEWVIKGKFEGICTESDYEAFDASTDQYIVAFELALMEYLGLPRD 1889

Query: 3144 LIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGDD 2965
            L+ DY +IK HLGS L +FAIMRFSGEASTFLFNTMANMLF F+RYNI +S +ICFAGDD
Sbjct: 1890 LMEDYAFIKFHLGSNLPNFAIMRFSGEASTFLFNTMANMLFPFLRYNIRDSAHICFAGDD 1949

Query: 2964 MCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAKE 2785
            MCAS +L + K++E FL+KLKLKAKV F  KPTFCGW+L PDGIYKKPQLVLERMCIAKE
Sbjct: 1950 MCASERLCIKKDHEGFLNKLKLKAKVFFVDKPTFCGWHLCPDGIYKKPQLVLERMCIAKE 2009

Query: 2784 TNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVYG 2605
             NNL NC+DNYAIEVSYAYK+GE+AVNRMDEEEL A YNCVRII+KN+ LL+S++   Y 
Sbjct: 2010 KNNLANCLDNYAIEVSYAYKLGERAVNRMDEEELEAAYNCVRIIIKNKKLLKSDILGFYS 2069

Query: 2604 N 2602
            +
Sbjct: 2070 S 2070


>emb|CAO78694.1| polyprotein [Chrysanthemum virus B]
          Length = 2079

 Score = 1811 bits (4691), Expect = 0.0
 Identities = 934/1577 (59%), Positives = 1120/1577 (71%), Gaps = 37/1577 (2%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            MALTYRSP+ + +  +D S+ + IA+T+A +YK+ E  NF  FN+ + P   +HLI AGI
Sbjct: 1    MALTYRSPMEENVGAYDSSVQAAIASTSANYYKEAEVNNFQFFNHYLRPIAKRHLIEAGI 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSP+S VPHSH ACKTLEN++LY VLP  +DN FYFVGIK  KL  LK R+   + +  
Sbjct: 61   YLSPYSAVPHSHAACKTLENHLLYNVLPPLVDNRFYFVGIKQSKLEFLKLRNSKLSAISK 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            INR+VTS DK RY SDFV + SKPH+G  RH + +E PTLRDL+P L  R  K LFLHDE
Sbjct: 121  INRFVTSADKARYGSDFVKKVSKPHAGFKRHELQVETPTLRDLLPSLKEREAKYLFLHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            LHYW  ++L + LEV+QP+++LGT+VYPPELL GS +SLN WCY YEVK +   FYPDGV
Sbjct: 181  LHYWSKEDLISLLEVLQPEMMLGTMVYPPELLFGSNRSLNPWCYAYEVKKKNFLFYPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
            R+EG+EQPLNGG+LLECGKI L DGT+Y VDIL SKFAHHL+S+TRGEAAGP+MRS+GPF
Sbjct: 241  RSEGHEQPLNGGYLLECGKITLVDGTVYKVDILCSKFAHHLVSITRGEAAGPTMRSFGPF 300

Query: 7772 EATACNGL-DPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEE 7596
                 +GL  P  RDVSCSFPI YEVVSK+YRYLKTLRKPDEQSSMAKLTQLLPCPTGEE
Sbjct: 301  N-NGVHGLGSPHTRDVSCSFPIPYEVVSKVYRYLKTLRKPDEQSSMAKLTQLLPCPTGEE 359

Query: 7595 IVFEQEFSKLV-ISTNSIKTMISADRLKIFMGKYLSRL--PKVIAERFDTVKEISLHEFI 7425
            IVF QE  K      +S    +    LKIFMG+    L  PK++A+ F+TV EISLHEFI
Sbjct: 360  IVFVQEILKSCDRHQHSENHGLVQTGLKIFMGQVTLELSCPKILADVFETVLEISLHEFI 419

Query: 7424 KNLEPFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAG 7245
            KNLEPFTVDV LKE+KWNNVWTLELKDDG+ADE LDP+RM++++FG G Y A+PDR SAG
Sbjct: 420  KNLEPFTVDVQLKELKWNNVWTLELKDDGLADEFLDPVRMIEERFGRGEYVAVPDRTSAG 479

Query: 7244 YYMTREKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFFRMICARPF 7065
            YY+ +  L  L GPLIE+++ VL++TLA+ICYKSLSNSDGT+ASINEIAAFFRMICA+PF
Sbjct: 480  YYLAKPSLAKLRGPLIEIEQRVLRITLAAICYKSLSNSDGTIASINEIAAFFRMICAKPF 539

Query: 7064 LRPAKWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKYLTVHPN 6885
            LRPAK+KVYDLYG  GAIGLQ YMRSRWA +V FYWANIGL+WFR N K YQK+LT  P+
Sbjct: 540  LRPAKYKVYDLYGEGGAIGLQKYMRSRWAHHVRFYWANIGLLWFRSNYKFYQKFLTAQPD 599

Query: 6884 GGTTYSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRCG---------------------- 6771
            G  TY  LM  W  V  EV+       KT N+SWLRC                       
Sbjct: 600  GHGTYKSLMHPWSKVMHEVTNHQFHSSKTSNYSWLRCERSTDKPTETCGVHGGARSGRVV 659

Query: 6770 GRKVPECTQA--EETNVPPPEEKEANTE-SVNEPHFSSEPPPMYEYKEETSATREVKCSC 6600
            GRK      A  E+      E K+   E  V+E      PP    Y  E      V+C C
Sbjct: 660  GRKAESKGSAGGEDPKSDQGEGKDQGEERPVDEAAHGGCPPQPQAYSNEEKGAHTVQCPC 719

Query: 6599 GLIITIEKDPSASLHKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTL 6420
             ++++I  D +  LHKFQTPDRLKNR AGFYSK+G GY YNGG HQSLNWP W++ WM L
Sbjct: 720  SVVLSIRNDGATRLHKFQTPDRLKNRYAGFYSKNGVGYSYNGGEHQSLNWPGWISVWMRL 779

Query: 6419 LGIPEEYNCCLVQRYDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDG 6240
            +GIPE YNCCLVQRYD    IG+HSDDE+CF+ G P++TVNIEG A F   CK  +  + 
Sbjct: 780  VGIPEIYNCCLVQRYDENAKIGMHSDDEECFVTGGPIYTVNIEGRATFMTTCKEGKTKEI 839

Query: 6239 VNFALNSGEYFEMPRGFQETHKHGVGSTSKGRLSVTFRIMR----DERETPETHSGTNGN 6072
             +F L  G+ FEMP GFQETHKH V  TSK RLSVTFR+M+    DE++  E    + G 
Sbjct: 840  TSFELGPGDLFEMPGGFQETHKHAVFETSKDRLSVTFRLMKQICQDEQKDHEETDTSGGK 899

Query: 6071 HDAEPEGGANSPKNETHFENDEEQSNSDEANQDATSESDCGHSEEPQEQSGDQRKNRGAE 5892
               E E    + +  T  EN +E+   +E  +  +S S   + E  Q   G    N  AE
Sbjct: 900  KAGEAE---ETEQPNTEKENPDEEGAGNEEGEHGSSNS--RNKEREQGNDGSDCTNT-AE 953

Query: 5891 ASTEGFTRNFNGCKVSVCTGILSHTYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRH 5712
            +  E FTR+FNGCKVSV    L +TYNT DCGG GNCFWLCLANE+G      KKLAL +
Sbjct: 954  SGAEAFTRHFNGCKVSVHAEKLPYTYNTTDCGGNGNCFWLCLANELGLCPFRGKKLALEY 1013

Query: 5711 DLGSAGANLEALKCAGEGVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRSDRVLH 5532
            DLGSAGAN  A  CAGEGVYAVDEAIACAA  F++AI++YQP+  + T+FEPT+ +RV++
Sbjct: 1014 DLGSAGANETARSCAGEGVYAVDEAIACAASVFRVAIKIYQPELSVMTVFEPTKGERVIY 1073

Query: 5531 LELKDEHFRIMRIVNGCVIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVF 5352
            LEL  EHF++MRI+NGCV++A++SALNR E E+MHVIEENCD  MV  LW G GVDLGVF
Sbjct: 1074 LELSGEHFKLMRIINGCVVKAMASALNRKESEVMHVIEENCDPMMVTSLWNGEGVDLGVF 1133

Query: 5351 QALLELFSIKALIFENGKEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKV 5172
             +LLELFSIKALIFE  +EVLYNREGRF ASFEI GDHIEH  RKK AC  LFEECG+  
Sbjct: 1134 HSLLELFSIKALIFEGSREVLYNREGRFEASFEIKGDHIEHVHRKKGACNALFEECGKTH 1193

Query: 5171 GVKAESLELLNKAGTNIRYQSTLARARRLADSLCAGATGVVSSSLFNKRPNL--AGKFRV 4998
             VKAESLELLN+AGT + Y+STLAR  +LADSL  G TGVVSSSLFNK+PNL  A     
Sbjct: 1194 EVKAESLELLNRAGTLLNYESTLARPTKLADSLRPGTTGVVSSSLFNKKPNLFPAQFVEK 1253

Query: 4997 NTEVLGRDVLAVIGTFGSGKSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVAR-X 4821
              E L RDVLAVIGT GSGKSTILKNFFKINLGRKVLYVSPR+ALL EF   VCG +R  
Sbjct: 1254 TNESLSRDVLAVIGTLGSGKSTILKNFFKINLGRKVLYVSPRRALLNEFQRGVCGCSRNQ 1313

Query: 4820 XXXXXXXXXXQENWDFMTFESFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVH 4641
                      QENWDFMTFE+FIL CS LP+GMAV+LDEIQLYPPGYLDM+CYL   GVH
Sbjct: 1314 EERKAARKKGQENWDFMTFETFILKCSNLPSGMAVVLDEIQLYPPGYLDMICYLTKKGVH 1373

Query: 4640 IVVAGDPAQSDYDSEKDRVWLHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCTFN 4461
            ++VAGDP QSDYD+E+DR WL  +  D  +LL GQ YK+   S R  N  F GRLPC   
Sbjct: 1374 LIVAGDPCQSDYDNERDRAWLSTMRSDVEQLLEGQSYKFNVQSHRFSNENFRGRLPCEMT 1433

Query: 4460 IPKTSDAD-EDFEVRGGIEIIHKIEAKWKECYLVSSFEEKRLVEYYQDEKGKREEKVLTF 4284
              + S+   E+  +  G E + +I  ++ + +LVSSFEEK+++E +     +R  KV TF
Sbjct: 1434 GKEVSEVPLEEHLLYTGCEELVQIMDEYSKIFLVSSFEEKKIIETHFPMSEQR--KVYTF 1491

Query: 4283 GESTGLTFNYGCILITQSSEKTNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRAL 4104
            GESTGL F  G I+IT  S  T+E+RW+TALSRF ++ICF+N  G   + L  +Y+ RAL
Sbjct: 1492 GESTGLNFKVGTIIITNVSAATSEKRWLTALSRFSENICFVNLLGTDWNGLFGLYKHRAL 1551

Query: 4103 GRFLGKRADVEDLRKFL 4053
            GRFL K+A + DL + L
Sbjct: 1552 GRFLSKKAQLNDLLEHL 1568



 Score =  697 bits (1800), Expect = 0.0
 Identities = 344/481 (71%), Positives = 393/481 (81%)
 Frame = -1

Query: 4044 GDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEARE 3865
            GDPWLK MIDL Q ED          + +EEWFKTHLPQ +LE V ARWVHKI+ KEARE
Sbjct: 1595 GDPWLKCMIDLGQTEDVEEVELLEE-VMQEEWFKTHLPQPDLEGVPARWVHKIMLKEARE 1653

Query: 3864 VRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPLV 3685
            VRMGDIVS+QF +++ K+ G  LTN AERFE IYPRHR+SD VTF+MAV+KRLRFS+P V
Sbjct: 1654 VRMGDIVSDQFTEDYPKDLGTNLTNEAERFETIYPRHRASDPVTFLMAVKKRLRFSRPAV 1713

Query: 3684 EVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIRS 3505
            E   L+ AK YG  L+ +FLK VPLK   +  +M +AK +FE KK SKSAA IENH+ RS
Sbjct: 1714 EKAILQGAKLYGKFLINEFLKKVPLKQAHNAAMMERAKFDFEEKKTSKSAATIENHAGRS 1773

Query: 3504 TRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRESL 3325
             R+WLID+G IFSKSQ+CTKF+ RF   KAAQSIVCFQH+VL RFAPYMRYIE KL E+L
Sbjct: 1774 CRNWLIDVGLIFSKSQLCTKFDNRFRVVKAAQSIVCFQHAVLCRFAPYMRYIEAKLHEAL 1833

Query: 3324 PDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQS 3145
            P RFYIHSGKGLE L+ WV    F+G+CTESDYEAFDASQDQYIVAFELALM YLGLP+ 
Sbjct: 1834 PSRFYIHSGKGLEALNEWVIKGRFEGICTESDYEAFDASQDQYIVAFELALMEYLGLPRD 1893

Query: 3144 LIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGDD 2965
            LI DY +IK HLGSKLG+FAIMRFSGEASTFLFNTMANMLFTF+RYNI +S +ICFAGDD
Sbjct: 1894 LIEDYAFIKCHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYNIRDSAHICFAGDD 1953

Query: 2964 MCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAKE 2785
            MCAS +L + KE+E FL+KLKLKAKV F  KPTFCGW++  DGIYKKPQLVLERMCIAKE
Sbjct: 1954 MCASERLCIKKEHEGFLNKLKLKAKVFFVDKPTFCGWHVCSDGIYKKPQLVLERMCIAKE 2013

Query: 2784 TNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVYG 2605
             NNL NC+DNYAIEVSYAYK+GE+AVNRMDEEEL A YNCVRII+KN+ LL+SN+   Y 
Sbjct: 2014 KNNLANCLDNYAIEVSYAYKLGERAVNRMDEEELEAAYNCVRIIIKNKKLLKSNIIGFYS 2073

Query: 2604 N 2602
            N
Sbjct: 2074 N 2074


>emb|CAK54343.1| polyprotein, partial [Chrysanthemum virus B]
          Length = 2075

 Score = 1810 bits (4689), Expect = 0.0
 Identities = 932/1569 (59%), Positives = 1121/1569 (71%), Gaps = 36/1569 (2%)
 Frame = -2

Query: 8663 TYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGIYLS 8484
            TYRSP+ + +  +D S+ + IA+T+A +Y++ E  NF  FNY + P   +H+I AGIYLS
Sbjct: 1    TYRSPMEENVGAYDSSVQAAIASTSANYYREAEVSNFQFFNYYLRPIGKRHIIEAGIYLS 60

Query: 8483 PFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQCINR 8304
            P+S VPHSH ACKTLEN++LY VLP  +DN F+FVGIK  KL  LK R+   + +  INR
Sbjct: 61   PYSAVPHSHAACKTLENHLLYNVLPPLVDNRFHFVGIKQSKLEFLKLRNSKLSTISKINR 120

Query: 8303 YVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDELHY 8124
            +VTS DK RY SDFV + SKPH G  RH + +E PTLRDL+P L  R  K LFLHDELHY
Sbjct: 121  FVTSADKARYGSDFVKKVSKPHVGFKRHELQVETPTLRDLLPCLKEREAKYLFLHDELHY 180

Query: 8123 WKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGVRAE 7944
               ++L + LEV+QP+++LGT+VYPPELL GS +SLN WCY YEVK +   FYPDGVR+E
Sbjct: 181  LNKEDLISLLEVLQPEMMLGTMVYPPELLFGSNRSLNPWCYAYEVKKKNFLFYPDGVRSE 240

Query: 7943 GYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPFEAT 7764
            G+EQPLNGG+LLECGKI L DGT+Y VDIL SKFAHHL+S+TRGEAAGP+MRS+GPF   
Sbjct: 241  GHEQPLNGGYLLECGKITLVDGTVYKVDILCSKFAHHLVSITRGEAAGPTMRSFGPFN-N 299

Query: 7763 ACNGL-DPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVF 7587
              +GL  P  RDVSCSFPI YEVVSK+YRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVF
Sbjct: 300  GVHGLGSPHTRDVSCSFPIPYEVVSKVYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVF 359

Query: 7586 EQEFSKLV-ISTNSIKTMISADRLKIFMGKYLSRL--PKVIAERFDTVKEISLHEFIKNL 7416
             QE  K      +S    +    LKIFMG+    L  PK++A+ F+TV EISLHEFIKNL
Sbjct: 360  VQEILKSCDRHQHSENHGLVQTGLKIFMGQVTLELSCPKILADVFETVLEISLHEFIKNL 419

Query: 7415 EPFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGYYM 7236
            EPFTVDV LKE+KWNNVWTLELKDDG+ADE LDP+RM++++FG G Y A+PDR SAGYY+
Sbjct: 420  EPFTVDVQLKELKWNNVWTLELKDDGLADEFLDPVRMIEERFGRGEYVAVPDRTSAGYYL 479

Query: 7235 TREKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFFRMICARPFLRP 7056
             +  L  L GPLIE+++ VL++TLA+ICYKSLSNSDGT+ASINEIAAFFRMICA+PFLRP
Sbjct: 480  AKPSLAKLRGPLIEIEQRVLRITLAAICYKSLSNSDGTIASINEIAAFFRMICAKPFLRP 539

Query: 7055 AKWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKYLTVHPNGGT 6876
            AK+KVYDLYG  GAIGLQ YMRSRWA +V FYWANIGL+WFR N K YQK+LT  P+G  
Sbjct: 540  AKYKVYDLYGEGGAIGLQKYMRSRWAHHVRFYWANIGLLWFRSNYKFYQKFLTAQPDGHG 599

Query: 6875 TYSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRCG----------------------GRK 6762
            TY  LM  W  V  EV+       KT N+SWLRC                       GRK
Sbjct: 600  TYKSLMHPWSKVMHEVTNHQFHSSKTSNYSWLRCERSTDKPTETCGVHGGARSGRVVGRK 659

Query: 6761 VPECTQA--EETNVPPPEEKEANTE-SVNEPHFSSEPPPMYEYKEETSATREVKCSCGLI 6591
                  A  E+      E K+   E  V+E      PP    Y  E      V+C C ++
Sbjct: 660  AESKGSAGGEDPKSDQGEGKDQGEERPVDEAAHGGCPPQPQAYSNEEKGAHTVQCPCSVV 719

Query: 6590 ITIEKDPSASLHKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTLLGI 6411
            ++I  D +  LHKFQTPDRLKNR AGFYSK+G GY YNGG HQSLNWP W++ WM L+GI
Sbjct: 720  LSIRNDGATRLHKFQTPDRLKNRYAGFYSKNGVGYSYNGGEHQSLNWPGWISVWMRLVGI 779

Query: 6410 PEEYNCCLVQRYDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDGVNF 6231
            PE YNCCLVQRYD    IG+HSDDE+CF+ G P++TVNIEG A F   CK  +  +  +F
Sbjct: 780  PEIYNCCLVQRYDENAKIGMHSDDEECFVTGGPIYTVNIEGRATFMTTCKEGKTKEITSF 839

Query: 6230 ALNSGEYFEMPRGFQETHKHGVGSTSKGRLSVTFRIMR----DERETPETHSGTNGNHDA 6063
             L  G+ FEMP GFQETHKH V  TSK RLSVTFR+M+    DE++  E    + G    
Sbjct: 840  ELGPGDLFEMPGGFQETHKHAVFETSKDRLSVTFRLMKQICQDEQKDHEETDTSGGKKAG 899

Query: 6062 EPEGGANSPKNETHFENDEEQSNSDEANQDATSESDCGHSEEPQEQSGDQRKNRGAEAST 5883
            E E    + +  T  EN +E+   +E  +  +S S   + E  Q   G    N  AE+  
Sbjct: 900  EAE---ETEQPNTEKENPDEEGAGNEEGEHGSSNS--RNKEREQGNDGSDCTNT-AESGA 953

Query: 5882 EGFTRNFNGCKVSVCTGILSHTYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRHDLG 5703
            E FTR+FNGCKVSV    L +TYNT DCGG GNCFWLCLANE+G      KKLAL +DLG
Sbjct: 954  EAFTRHFNGCKVSVHAEKLPYTYNTTDCGGNGNCFWLCLANELGLCPFRGKKLALEYDLG 1013

Query: 5702 SAGANLEALKCAGEGVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRSDRVLHLEL 5523
            SAGAN  A  CAGEGVYAVDEAIACAA  F++AI++YQP+  + T+FEPT+ +RV++LEL
Sbjct: 1014 SAGANETARSCAGEGVYAVDEAIACAASVFRVAIKIYQPELSVMTVFEPTKGERVIYLEL 1073

Query: 5522 KDEHFRIMRIVNGCVIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVFQAL 5343
              EHFR+MRI+NGCV++A++SALNR E E+MHVIEENCD  MV  LW G GVDLGVF +L
Sbjct: 1074 SGEHFRLMRIINGCVVKAMASALNRKESEVMHVIEENCDPMMVTSLWNGEGVDLGVFHSL 1133

Query: 5342 LELFSIKALIFENGKEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKVGVK 5163
            LELFSIKALIFE  +EVLYNREGRF ASFEI GDHIEH  RKK AC  LFEECG+   VK
Sbjct: 1134 LELFSIKALIFEGSREVLYNREGRFEASFEIKGDHIEHVHRKKGACNALFEECGKTHEVK 1193

Query: 5162 AESLELLNKAGTNIRYQSTLARARRLADSLCAGATGVVSSSLFNKRPNL-AGKFRVNTEV 4986
            AESLELLN+AGT + Y+STLARARRLADSLC+G TGVVSSSLFNK+PNL   +FR   E 
Sbjct: 1194 AESLELLNRAGTLLNYESTLARARRLADSLCSGTTGVVSSSLFNKKPNLFPVQFREKNES 1253

Query: 4985 LGRDVLAVIGTFGSGKSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVAR-XXXXX 4809
            L RDVLAVIGT GSGKSTILKNFFKINLGRKVLYVSPR+ALL EF   VCG +R      
Sbjct: 1254 LSRDVLAVIGTLGSGKSTILKNFFKINLGRKVLYVSPRRALLNEFQRGVCGCSRNQEERK 1313

Query: 4808 XXXXXXQENWDFMTFESFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHIVVA 4629
                  QENWDFMTFE+FIL CS LP+GMAV+LDEIQLYPPGYLDM+CYL   GVH++VA
Sbjct: 1314 AARKKGQENWDFMTFETFILKCSNLPSGMAVVLDEIQLYPPGYLDMICYLTKKGVHLIVA 1373

Query: 4628 GDPAQSDYDSEKDRVWLHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCTFNIPKT 4449
            GDP QSDYD+E+DR WL  +  D  +LL GQ YK+   S R  N  F GRLPC     + 
Sbjct: 1374 GDPCQSDYDNERDRAWLSTMRSDVEQLLEGQSYKFNVQSHRFNNENFRGRLPCEITGKEV 1433

Query: 4448 SDA-DEDFEVRGGIEIIHKIEAKWKECYLVSSFEEKRLVEYYQDEKGKREEKVLTFGEST 4272
            +++  E+  +  G E + +I  ++ + +LVSSFEEK+++E +     +R  KV TFGEST
Sbjct: 1434 AESLSEEHLLYTGCEELVQIMDEYSKIFLVSSFEEKKIIETHFPISEQR--KVYTFGEST 1491

Query: 4271 GLTFNYGCILITQSSEKTNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRALGRFL 4092
            GL F  G I+IT  S  T+E+RW+TALSRF ++ICF+N  G   + L  +Y+ RALGRFL
Sbjct: 1492 GLNFKVGTIIITNVSAATSEKRWLTALSRFSENICFVNLLGTDWNGLFGLYKHRALGRFL 1551

Query: 4091 GKRADVEDL 4065
             K+A ++DL
Sbjct: 1552 SKQAQLKDL 1560



 Score =  713 bits (1841), Expect = 0.0
 Identities = 352/481 (73%), Positives = 399/481 (82%)
 Frame = -1

Query: 4044 GDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEARE 3865
            GDPWLK MIDL Q ED          + +EEWFKTHLPQ +LE VRARWVHKI+ KEARE
Sbjct: 1591 GDPWLKCMIDLGQAEDAEEVELLEE-VMQEEWFKTHLPQADLEGVRARWVHKIMLKEARE 1649

Query: 3864 VRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPLV 3685
            VRMG++VSEQF D++ KE G  LTNAAERFE IYPRHR+SDTVTF+MAV+KRLRFS+P V
Sbjct: 1650 VRMGNMVSEQFTDDYPKELGTNLTNAAERFETIYPRHRASDTVTFIMAVKKRLRFSRPAV 1709

Query: 3684 EVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIRS 3505
            E  KL+ AK YG  LL +FLK V LK   +  +M +AK +FE KK SKSAA IENH+ RS
Sbjct: 1710 EKAKLQEAKLYGKFLLNEFLKKVSLKQAHNTTMMERAKFDFEEKKTSKSAATIENHAGRS 1769

Query: 3504 TRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRESL 3325
             RDWLID+G IFSKSQ+CTKF+ RF  AKAAQSIVCFQH+VL RFAPYMRYIE KL E L
Sbjct: 1770 CRDWLIDVGLIFSKSQLCTKFDNRFRIAKAAQSIVCFQHAVLCRFAPYMRYIEAKLHEVL 1829

Query: 3324 PDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQS 3145
            P RFYIHSGKGLEEL+ WV    F+G+CTESDYEAFDASQDQYIVAFELALM YLGLP+ 
Sbjct: 1830 PSRFYIHSGKGLEELNEWVIKGKFEGICTESDYEAFDASQDQYIVAFELALMEYLGLPRD 1889

Query: 3144 LIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGDD 2965
            LI DY +IK HLGSKLG+FAIMRFSGEASTFLFNTMANMLFTF+RYNI +S++ICFAGDD
Sbjct: 1890 LIEDYAFIKCHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYNIRDSEHICFAGDD 1949

Query: 2964 MCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAKE 2785
            +CAS +L + KE+E FL+KLKLKAKV F  KPTFCGW+L PDGIYKKPQLVLERMCIAKE
Sbjct: 1950 LCASERLCIKKEHEGFLNKLKLKAKVFFVDKPTFCGWHLCPDGIYKKPQLVLERMCIAKE 2009

Query: 2784 TNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVYG 2605
             NNL NC+DNYAIEVSYAYK+GE+AVNRMDEEEL A YNCVRII+KN+ LL+S++   Y 
Sbjct: 2010 KNNLANCLDNYAIEVSYAYKLGERAVNRMDEEELEAAYNCVRIIIKNKKLLKSDILGFYS 2069

Query: 2604 N 2602
            N
Sbjct: 2070 N 2070


>emb|CAK54342.1| polyprotein, partial [Chrysanthemum virus B]
          Length = 2076

 Score = 1806 bits (4678), Expect = 0.0
 Identities = 931/1574 (59%), Positives = 1117/1574 (70%), Gaps = 37/1574 (2%)
 Frame = -2

Query: 8663 TYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGIYLS 8484
            TYRSP+ + +  +D S+ + IA+T+A +YK+ E  NF  FN+ + P   +HLI AGIYLS
Sbjct: 1    TYRSPMEENVGAYDSSVQAAIASTSANYYKEAEVNNFQFFNHYLRPIAKRHLIEAGIYLS 60

Query: 8483 PFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQCINR 8304
            P+S VPHSH ACKTLEN++LY VLP  +DN FYFVGIK  KL  LK R+   + +  INR
Sbjct: 61   PYSAVPHSHAACKTLENHLLYNVLPPLVDNRFYFVGIKQSKLEFLKLRNSKLSAISKINR 120

Query: 8303 YVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDELHY 8124
            +VTS DK RY SDFV + SKPH+G  RH + +E PTLRDL+P L  R  K LFLHDELHY
Sbjct: 121  FVTSADKARYGSDFVKKVSKPHAGFKRHELQVETPTLRDLLPSLKEREAKYLFLHDELHY 180

Query: 8123 WKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGVRAE 7944
            W  ++L + LEV+QP+++LGT+VYPPELL GS +SLN WCY YEVK +   FYPDGVR+E
Sbjct: 181  WSKEDLISLLEVLQPEMMLGTMVYPPELLFGSNRSLNPWCYAYEVKKKNFLFYPDGVRSE 240

Query: 7943 GYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPFEAT 7764
            G+EQPLNGG+LLECGKI L DGT+Y VDIL SKFAHHL+S+TRGEAAGP+MRS+GPF   
Sbjct: 241  GHEQPLNGGYLLECGKITLVDGTVYKVDILCSKFAHHLVSITRGEAAGPTMRSFGPFN-N 299

Query: 7763 ACNGL-DPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVF 7587
              +GL  P  RDVSCSFPI YEVVSK+YRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVF
Sbjct: 300  GVHGLGSPHTRDVSCSFPIPYEVVSKVYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEIVF 359

Query: 7586 EQEFSKLV-ISTNSIKTMISADRLKIFMGKYLSRL--PKVIAERFDTVKEISLHEFIKNL 7416
             QE  K      +S    +    LKIFMG+    L  PK++A+ F+TV EISLHEFIKNL
Sbjct: 360  VQEILKSCDRHQHSENHGLVQTGLKIFMGQVTLELSCPKILADVFETVLEISLHEFIKNL 419

Query: 7415 EPFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGYYM 7236
            EPFTVDV LKE+KWNNVWTLELKDDG+ADE LDP+RM++++FG G Y A+PDR SAGYY+
Sbjct: 420  EPFTVDVQLKELKWNNVWTLELKDDGLADEFLDPVRMIEERFGRGEYVAVPDRTSAGYYL 479

Query: 7235 TREKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFFRMICARPFLRP 7056
             +  L  L GPLIE+++ VL++TLA+ICYKSLSNSDGT+ASINEIAAFFRMICA+PFLRP
Sbjct: 480  AKPSLAKLRGPLIEIEQRVLRITLAAICYKSLSNSDGTIASINEIAAFFRMICAKPFLRP 539

Query: 7055 AKWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKYLTVHPNGGT 6876
            AK+KVYDLYG  GAIGLQ YMRSRWA +V FYWANIGL+WFR N K YQK+LT  P+G  
Sbjct: 540  AKYKVYDLYGEGGAIGLQKYMRSRWAHHVRFYWANIGLLWFRSNYKFYQKFLTAQPDGHG 599

Query: 6875 TYSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRCG----------------------GRK 6762
            TY  LM  W  V  EV+       KT N+SWLRC                       GRK
Sbjct: 600  TYKSLMHPWSKVMHEVTNHQFHSSKTSNYSWLRCERSTDKPTETCGVHGGARSGRVVGRK 659

Query: 6761 VPECTQA--EETNVPPPEEKEANTE-SVNEPHFSSEPPPMYEYKEETSATREVKCSCGLI 6591
                  A  E+      E K+   E  V+E      PP    Y  E      V+C C ++
Sbjct: 660  AESKGSAGGEDPKSDQGEGKDQGEERPVDEAAHGGCPPQPQAYSNEEKGAHTVQCPCSVV 719

Query: 6590 ITIEKDPSASLHKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTLLGI 6411
            ++I  D +  LHKFQTPDRLKNR AGFYSK+G GY YNGG HQSLNWP W++ WM L+GI
Sbjct: 720  LSIRNDGATRLHKFQTPDRLKNRYAGFYSKNGVGYSYNGGEHQSLNWPGWISVWMRLVGI 779

Query: 6410 PEEYNCCLVQRYDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDGVNF 6231
            PE YNCCLVQRYD    IG+HSDDE+CF+ G P++TVNIEG A F   CK  +  +  +F
Sbjct: 780  PEIYNCCLVQRYDENAKIGMHSDDEECFVTGGPIYTVNIEGRATFMTTCKEGKTKEITSF 839

Query: 6230 ALNSGEYFEMPRGFQETHKHGVGSTSKGRLSVTFRIMR----DERETPETHSGTNGNHDA 6063
             L  G+ FEMP GFQETHKH V  TSK RLSVTFR+M+    DE++  E    + G    
Sbjct: 840  ELGPGDLFEMPGGFQETHKHAVFETSKDRLSVTFRLMKQICQDEQKDHEETDTSGGKKAG 899

Query: 6062 EPEGGANSPKNETHFENDEEQSNSDEANQDATSESDCGHSEEPQEQSGDQRKNRGAEAST 5883
            E E    + +  T  EN +E+   +E  +  +S S   + E  Q   G    N  AE+  
Sbjct: 900  EAE---ETEQPNTEKENPDEEGAGNEEGEHGSSNS--RNKEREQGNDGSDCTNT-AESGA 953

Query: 5882 EGFTRNFNGCKVSVCTGILSHTYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRHDLG 5703
            E FTR+FNGCKVSV    L +TYNT DCGG GNCFWLCLANE+G      KKLAL +DLG
Sbjct: 954  EAFTRHFNGCKVSVHAEKLPYTYNTTDCGGNGNCFWLCLANELGLCPFRGKKLALEYDLG 1013

Query: 5702 SAGANLEALKCAGEGVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRSDRVLHLEL 5523
            SAGAN  A  CAGEGVYAVDEAIACAA  F++AI++YQP+  + T+FEPT+ +RV++LEL
Sbjct: 1014 SAGANETARSCAGEGVYAVDEAIACAASVFRVAIKIYQPELSVMTVFEPTKGERVIYLEL 1073

Query: 5522 KDEHFRIMRIVNGCVIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVFQAL 5343
              EHF++MRI+NGCV++A++SALNR E E+MHVIEENCD  MV  LW G GVDLGVF +L
Sbjct: 1074 SGEHFKLMRIINGCVVKAMASALNRKESEVMHVIEENCDPMMVTSLWNGEGVDLGVFHSL 1133

Query: 5342 LELFSIKALIFENGKEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKVGVK 5163
            LELFSIKALIFE  +EVLYNREGRF ASFEI GDHIEH  RKK AC  LFEECG+   VK
Sbjct: 1134 LELFSIKALIFEGSREVLYNREGRFEASFEIKGDHIEHVHRKKGACNALFEECGKTHEVK 1193

Query: 5162 AESLELLNKAGTNIRYQSTLARARRLADSLCAGATGVVSSSLFNKRPNL--AGKFRVNTE 4989
            AESLELLN+AGT + Y+STLAR  +LADSL  G TGVVSSSLFNK+PNL  A       E
Sbjct: 1194 AESLELLNRAGTLLNYESTLARPTKLADSLRPGTTGVVSSSLFNKKPNLFPAQFVEKTNE 1253

Query: 4988 VLGRDVLAVIGTFGSGKSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVAR-XXXX 4812
             L RDVLAVIGT GSGKSTILKNFFKINLGRKVLYVSPR+ALL EF   VCG +R     
Sbjct: 1254 SLSRDVLAVIGTLGSGKSTILKNFFKINLGRKVLYVSPRRALLNEFQRGVCGCSRNQEER 1313

Query: 4811 XXXXXXXQENWDFMTFESFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHIVV 4632
                   QENWDFMTFE+FIL CS LP+GMAV+LDEIQLYPPGYLDM+CYL   GVH++V
Sbjct: 1314 KAARKKGQENWDFMTFETFILKCSNLPSGMAVVLDEIQLYPPGYLDMICYLTKKGVHLIV 1373

Query: 4631 AGDPAQSDYDSEKDRVWLHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCTFNIPK 4452
            AGDP QSDYD+E+DR WL  +  D  +LL GQ YK+   S R  N  F GRLPC     +
Sbjct: 1374 AGDPCQSDYDNERDRAWLSTMRSDVEQLLEGQSYKFNVQSHRFSNENFRGRLPCEMTGKE 1433

Query: 4451 TSDAD-EDFEVRGGIEIIHKIEAKWKECYLVSSFEEKRLVEYYQDEKGKREEKVLTFGES 4275
             S+   E+  +  G E + +I  ++ + +LVSSFEEK+++E +     +R  KV TFGES
Sbjct: 1434 VSEVPLEEHLLYTGCEELVQIMDEYSKIFLVSSFEEKKIIETHFPMSEQR--KVYTFGES 1491

Query: 4274 TGLTFNYGCILITQSSEKTNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRALGRF 4095
            TGL F  G I+IT  S  T+E+RW+TALSRF ++ICF+N  G   + L  +Y+ RALGRF
Sbjct: 1492 TGLNFKVGTIIITNVSAATSEKRWLTALSRFSENICFVNLLGTDWNGLFGLYKHRALGRF 1551

Query: 4094 LGKRADVEDLRKFL 4053
            L K+A + DL + L
Sbjct: 1552 LSKKAQLNDLLEHL 1565



 Score =  697 bits (1800), Expect = 0.0
 Identities = 344/481 (71%), Positives = 393/481 (81%)
 Frame = -1

Query: 4044 GDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEARE 3865
            GDPWLK MIDL Q ED          + +EEWFKTHLPQ +LE V ARWVHKI+ KEARE
Sbjct: 1592 GDPWLKCMIDLGQTEDVEEVELLEE-VMQEEWFKTHLPQPDLEGVPARWVHKIMLKEARE 1650

Query: 3864 VRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPLV 3685
            VRMGDIVS+QF +++ K+ G  LTN AERFE IYPRHR+SD VTF+MAV+KRLRFS+P V
Sbjct: 1651 VRMGDIVSDQFTEDYPKDLGTNLTNEAERFETIYPRHRASDPVTFLMAVKKRLRFSRPAV 1710

Query: 3684 EVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIRS 3505
            E   L+ AK YG  L+ +FLK VPLK   +  +M +AK +FE KK SKSAA IENH+ RS
Sbjct: 1711 EKAILQGAKLYGKFLINEFLKKVPLKQAHNAAMMERAKFDFEEKKTSKSAATIENHAGRS 1770

Query: 3504 TRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRESL 3325
             R+WLID+G IFSKSQ+CTKF+ RF   KAAQSIVCFQH+VL RFAPYMRYIE KL E+L
Sbjct: 1771 CRNWLIDVGLIFSKSQLCTKFDNRFRVVKAAQSIVCFQHAVLCRFAPYMRYIEAKLHEAL 1830

Query: 3324 PDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQS 3145
            P RFYIHSGKGLE L+ WV    F+G+CTESDYEAFDASQDQYIVAFELALM YLGLP+ 
Sbjct: 1831 PSRFYIHSGKGLEALNEWVIKGRFEGICTESDYEAFDASQDQYIVAFELALMEYLGLPRD 1890

Query: 3144 LIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGDD 2965
            LI DY +IK HLGSKLG+FAIMRFSGEASTFLFNTMANMLFTF+RYNI +S +ICFAGDD
Sbjct: 1891 LIEDYAFIKCHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYNIRDSAHICFAGDD 1950

Query: 2964 MCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAKE 2785
            MCAS +L + KE+E FL+KLKLKAKV F  KPTFCGW++  DGIYKKPQLVLERMCIAKE
Sbjct: 1951 MCASERLCIKKEHEGFLNKLKLKAKVFFVDKPTFCGWHVCSDGIYKKPQLVLERMCIAKE 2010

Query: 2784 TNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVYG 2605
             NNL NC+DNYAIEVSYAYK+GE+AVNRMDEEEL A YNCVRII+KN+ LL+SN+   Y 
Sbjct: 2011 KNNLANCLDNYAIEVSYAYKLGERAVNRMDEEELEAAYNCVRIIIKNKKLLKSNIIGFYS 2070

Query: 2604 N 2602
            N
Sbjct: 2071 N 2071


>ref|YP_001552317.1| replicase [Phlox virus B]
 gb|ABW05092.1| replicase [Phlox virus B]
          Length = 2051

 Score = 1093 bits (2826), Expect = 0.0
 Identities = 624/1569 (39%), Positives = 880/1569 (56%), Gaps = 29/1569 (1%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            MALTYRSP+ + +  +D S+ S IA+T+A +YK  E + F  FNY ++P   + LI AG+
Sbjct: 1    MALTYRSPLEENVAAYDASVQSTIASTSACYYKDTEADKFRFFNYFVNPTAKKKLIEAGL 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSP+S +PHSHP CKTLENY L+ V+P  +DN F+FVGIK+ KL+ LKAR+ H + V+ 
Sbjct: 61   YLSPYSAMPHSHPVCKTLENYFLFEVIPSKIDNRFFFVGIKNEKLSMLKARNTHLSTVEK 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            +NRYVTS DK+RY SDFVVR ++   GL R R  L+G TL+DLVPELM +S K LF+HDE
Sbjct: 121  VNRYVTSADKVRYGSDFVVRPTEKIPGLIRQRPCLDGVTLKDLVPELMRKSAKHLFMHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            +HYW   +L TFLEV+QP+V+  T+VYPPELL GSK SL  WCY ++V G    FYPDGV
Sbjct: 181  IHYWSARDLITFLEVIQPEVMYATMVYPPELLVGSKFSLFKWCYEFDVIGNDFFFYPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
            R EGY QPL  G+LL+  +I L DG +Y VD++ SKFAHHLI++TRGE+ GP++R++GPF
Sbjct: 241  RTEGYLQPLKNGYLLKAKRILLPDGGVYHVDVVQSKFAHHLIAITRGESMGPNVRAFGPF 300

Query: 7772 EATACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 7593
            +AT C GL+PL  DVS  FP+S+EVVS++YRYL+TL+KPD QS+MAKL+QL+P P+G EI
Sbjct: 301  DATTCQGLEPLTSDVSHCFPVSFEVVSRVYRYLRTLKKPDVQSAMAKLSQLIPEPSGVEI 360

Query: 7592 VFEQEFSKLVISTNSIKTMISADRLKIFMGKYLSRLPKVIAERFDTVKEISLHEFIKNLE 7413
             F Q+F+ L+ISTN+IK+++   RL +F+G +L +LPK +A+RF TV E+SL +FI  +E
Sbjct: 361  KFLQDFASLIISTNTIKSILCPSRLPLFLGGWLRKLPKPLAQRFKTVAEVSLDDFISIME 420

Query: 7412 PFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGYYMT 7233
            PF+    L ++ WN   T +  +   AD  ++   ++D KF  G   ++ +R+S  Y   
Sbjct: 421  PFSFRQELCDVDWNYFHTFBFFEFTEADFGIEMAALMDHKFXYGKVASLLERQSQPY--- 477

Query: 7232 REKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFFRMICARPFLRPA 7053
               +  +  PL+E   E +     +  YK L +         ++ + +  +     LR  
Sbjct: 478  SGLVNGVKQPLLECPTECILKGFTTAIYKDLID-----VYAKDVISCWVAVDVEHRLRNN 532

Query: 7052 KWKVYD-------LYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKYLTV 6894
                 D       L  PN        + ++  R+    W  IG  WF    +A+ ++LT 
Sbjct: 533  TNYCVDIGAFKKLLLEPNHVNSTIRSLVNKALRSRLSSWFEIGPAWFLKAGRAHTRFLTS 592

Query: 6893 HPNGGTTYSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRCGGRKVPECTQAEETNVPPPE 6714
            +P+    Y +  Q W  V  E++ G+  LK  +   W     R   +     E +     
Sbjct: 593  YPHDAIVYKEAKQGWSHVLKELAGGSRSLKHREMDYWFE-KDRSSKDSGGTVENDEDDKG 651

Query: 6713 EKEANTESVNEPHFSSEPPPMYEYKE-ETSATREVKCSCGLIITIEKDPSASLHKFQTPD 6537
            E E    S ++    S+     EY E +T   R + CSCG+ + I+    + +H F+  D
Sbjct: 652  EPEGVVSSSSDD--GSDDKSSQEYIEVDTKVVRRMTCSCGVSMEIKTLLGSDMHAFKAKD 709

Query: 6536 RLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTLLGIPEEYNCCLVQRYDGGGGI 6357
            RLK R  G+YSK G  Y+Y GG+H S  WP WL  WM +  +P++YN CL Q Y+ G  +
Sbjct: 710  RLKGRVGGWYSKDGTPYLYTGGSHISQGWPDWLELWMQINKVPDKYNSCLYQIYEEGASV 769

Query: 6356 GLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDGVNFALNSGEYFEMPRGFQETH 6177
            G H+DDE  F KG  + T N+ G+A F I C   R+  G  + L     F MP  FQ TH
Sbjct: 770  GYHADDEPIFKKGEEIHTCNLSGKAVFEIKC---RNGAGGEY-LEGPMQFTMPMDFQGTH 825

Query: 6176 KHGVGSTSKGRLSVTFRIMRDERETPETHSGTNGNHDAEPEGGANSPKNETHFENDEEQS 5997
            KH V  T+KGR SVTFR++R      ET      + + EPE   + P  +   E D+E+ 
Sbjct: 826  KHSVSGTTKGRESVTFRVLR----ACETAQEKEVDAEQEPE---SPPDTDEENELDKEKL 878

Query: 5996 NSDEANQDATSESDCGHSEEPQEQSGDQRKNRGAEAST-EGFTRNFNGCKVSVCTGILSH 5820
            + DEA      E +     EP   S    +  G+EAS  E    +   C +         
Sbjct: 879  SEDEAGGSEEKEVEA----EPCGSSDQSGECGGSEASRDETLAVDMECCTIEYKEMPKGI 934

Query: 5819 TYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRHDLGSAGANLEALKCAGEGVYAVDE 5640
             YN VD  G GNCFW  L   +G +    K+L  +          +       G YA DE
Sbjct: 935  KYNKVDVRGDGNCFWYALECALGLDPMEMKRLCKQVKYKDPTKQRKLNDQLQTGAYAEDE 994

Query: 5639 AIACAACTFKIAIRVYQPDEKITTIFEPTRS-DRVLHLELKDEHFRIMRIVNGCVIRAIS 5463
             I+ A   F   +      +    ++ P R   +V+++ ++++HF  +   N C++RAI+
Sbjct: 995  IISAATHIFNFQLICLSAGDTGLVVYSPKREFSQVVYMHIENQHFNWVEPKNNCLVRAIA 1054

Query: 5462 SALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVFQALLELFSIKALIFENGKEVLYN 5283
             +LNR   E++ V+EE      V  LW+G GV L       + F I A++   GK   +N
Sbjct: 1055 VSLNRKTSEVLKVLEEGSCVGSVGTLWRGEGVALEDLDFYFDRFGINAMVEFEGKAYNFN 1114

Query: 5282 REGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKVGVKAESLELLNKAGTNIRYQSTL 5103
              G   A+F +   HIE   R   +   +       + V   SL ++  AG+ I ++   
Sbjct: 1115 ETGHLPAAFTLKDGHIEFIGRNSPSTVPMMRGRVNTLTVSPNSLLIIKAAGSTIEFRPDY 1174

Query: 5102 ARARRLADSLCAGATGVVSSSLFNKRPNLAGKFRVNTEVLGRDVLAVIGTFGSGKSTILK 4923
            +RA+ LAD    G TGV++S +FN   +L     +N       + +V+GTFGSGKS++ +
Sbjct: 1175 SRAKCLADCFHTGCTGVMNSKIFNNSEHLLAHVNINDRPNTVQINSVLGTFGSGKSSLFR 1234

Query: 4922 NFFKINLGRKVLYVSPRKALLEEFYI------------------NVCGVARXXXXXXXXX 4797
             FF  N G+ V YVSPR+AL +EF                    N  G +          
Sbjct: 1235 RFFDANPGKGVFYVSPRRALADEFRQKLENAVVRTKRKKGASSKNGAGASTGPDPNSQAE 1294

Query: 4796 XXQ-ENWDFMTFESFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHIVVAGDP 4620
              + +NW   TFE  +     +  GMA+ILDEIQLYPPGYLD++C L  +GVHIV+ GDP
Sbjct: 1295 RMKRKNWLVCTFEIILKKIHLVKPGMALILDEIQLYPPGYLDLICALCAEGVHIVIGGDP 1354

Query: 4619 AQSDYDSEKDRVWLHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCTFNIPKTSDA 4440
             QSDYD+EKDR WL  + P    +L G  YKYV  S+R +N  F GRLPC F       A
Sbjct: 1355 IQSDYDNEKDRNWLSNLPPCIDSVLEGAEYKYVIKSRRFKNGNFQGRLPCEFGTQMEGQA 1414

Query: 4439 DEDFEVRGGIEIIHKIEAKWKECYLVSSFEEKRLVEYYQDEKGKREEKVLTFGESTGLTF 4260
             E+  +  G+E +H I  ++ + +LVSSFEEK++VE +          VLTFGESTGL F
Sbjct: 1415 TEEHLLYSGLEHLHVIPQEFSKVFLVSSFEEKKIVEAHFPGS---NPTVLTFGESTGLNF 1471

Query: 4259 NYGCILITQSSEKTNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRALGRFLGKRA 4080
             YG I+IT  S  T+E+RWVTALSRF ++ICF+N   +S  EL  +Y  R LGRFLGKRA
Sbjct: 1472 KYGTIIITNVSAHTSEKRWVTALSRFSENICFVNLVNLSWSELARMYATRVLGRFLGKRA 1531

Query: 4079 DVEDLRKFL 4053
             + DL + L
Sbjct: 1532 KLSDLLEHL 1540



 Score =  719 bits (1856), Expect = 0.0
 Identities = 350/483 (72%), Positives = 405/483 (83%)
 Frame = -1

Query: 4044 GDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEARE 3865
            GDPWLK M+DL QIED         E+ + EWFK HLPQ ELESVRA+WVHKILAKE RE
Sbjct: 1567 GDPWLKGMVDLFQIEDVEEEEEQLEEM-QTEWFKVHLPQAELESVRAKWVHKILAKEFRE 1625

Query: 3864 VRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPLV 3685
            VR+G +VSEQF DEH +E+GKQLTNAAERFEAIYPRH+++DTVTF+MAV+KRL+FS+P  
Sbjct: 1626 VRIGHLVSEQFTDEHPREQGKQLTNAAERFEAIYPRHKANDTVTFMMAVKKRLKFSRPAT 1685

Query: 3684 EVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIRS 3505
            E  KL  A PYG  +LK+FLK +P+  +RD  +M Q+K+EFE KK+SKSAA IENHS RS
Sbjct: 1686 EKAKLVEAMPYGKFMLKEFLKKIPMNKSRDTKMMEQSKLEFEEKKLSKSAATIENHSGRS 1745

Query: 3504 TRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRESL 3325
             RDWLIDIG IFSKSQ+CTKF+ RF  AKAAQSIVCFQH VL RFAPYMRYIE KL ++L
Sbjct: 1746 CRDWLIDIGLIFSKSQLCTKFDNRFRVAKAAQSIVCFQHEVLCRFAPYMRYIEKKLHQAL 1805

Query: 3324 PDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQS 3145
            P  FYIHSGKGLEEL+ WV    FDGVCTESDYEAFDASQDQYI+AFE+ ++ YLGLP  
Sbjct: 1806 PGNFYIHSGKGLEELNEWVMRGRFDGVCTESDYEAFDASQDQYIMAFEIEMIKYLGLPAD 1865

Query: 3144 LIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGDD 2965
            LI+DYE+IKTHLGSKLG+FAIMRFSGEASTFLFNTMANMLFTF+RY I  ++ ICFAGDD
Sbjct: 1866 LISDYEFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYEIRGNEFICFAGDD 1925

Query: 2964 MCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAKE 2785
            MCAS++LPLS+ YE FLSKLKLKAKV F   PTFCGW+LSPDGIYKKPQLV+ERMCIAKE
Sbjct: 1926 MCASKRLPLSRAYEGFLSKLKLKAKVFFVKSPTFCGWHLSPDGIYKKPQLVMERMCIAKE 1985

Query: 2784 TNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVYG 2605
              NL +CIDNYAIE+SYAYKMGE A+ RMDEEE  A+YNCVRI+VKN+HLL+S++  ++ 
Sbjct: 1986 KGNLIDCIDNYAIELSYAYKMGELALCRMDEEETEAFYNCVRIVVKNKHLLKSDIKNLFT 2045

Query: 2604 NRA 2596
             RA
Sbjct: 2046 TRA 2048


>ref|YP_009288956.1| replicase [Ligustrum virus A]
 gb|AOO96599.1| replicase [Ligustrum virus A]
          Length = 1968

 Score = 1047 bits (2708), Expect = 0.0
 Identities = 612/1547 (39%), Positives = 858/1547 (55%), Gaps = 7/1547 (0%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            MALTYRSP+ +++T ++ S+ S IA+ +A  YK++E  NF LFNY +SP+  + L  AGI
Sbjct: 1    MALTYRSPMEEIVTCYESSVQSSIASASANFYKEVEAGNFQLFNYHLSPEAKRKLSIAGI 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSPFS +PHSHPACKTLENYILY VLP YLDN F+FVGIK FKL  LK R  + +++  
Sbjct: 61   YLSPFSAMPHSHPACKTLENYILYKVLPSYLDNRFFFVGIKQFKLELLKKRDPNLDLITS 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            INRYVTS DK RY SDFV   S    GL RH   L   TLRDL P L  R  K +FLHDE
Sbjct: 121  INRYVTSADKSRYGSDFVRLSSPEVLGLKRHASCLADSTLRDLAPALAARKGKYVFLHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            +HYW   +L TFLEV+ P+ VL T+VYPPELL G+  SL++WCYT++V+G+ L FYPDGV
Sbjct: 181  IHYWTTRDLLTFLEVLAPEQVLATMVYPPELLVGATSSLHSWCYTFDVQGKTLYFYPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
            R+EGYEQP+ GGFLL   K+ L DGT Y VD+L SKFAHHL+S+TRG++  P  RS+GPF
Sbjct: 241  RSEGYEQPVQGGFLLRTKKLHLPDGTTYCVDLLHSKFAHHLVSITRGDSCTPKARSFGPF 300

Query: 7772 EATACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 7593
            EAT C  L  L    +C  P+++EVVS+LYRYL++L+KPD+QS+MAKL+QLLP PTG EI
Sbjct: 301  EATGCKSLSLLTTTPNCFIPVAFEVVSRLYRYLRSLKKPDQQSAMAKLSQLLPEPTGTEI 360

Query: 7592 VFEQEFSKLVISTNSIKTMISADRLKIFMGKYLSRLPKVIAERFDTVKEISLHEFIKNLE 7413
             F  +F+KLV+ T  +++M+    LK++MGK+LSRLP V+A +F   KE++L  FI  L 
Sbjct: 361  KFTHDFAKLVMKTGEVESMLGTQHLKLWMGKWLSRLPNVLARQFTLAKEVALDSFISELA 420

Query: 7412 PFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGYYMT 7233
            PF   + L+++ W   +  EL +    +E +D ++ LD  +  G      DR+   Y + 
Sbjct: 421  PFCFTIKLEDVNWTTQYLQELLEPVDYEEDVDLVQELDRLYDGGKSPEW-DRQRTPYSLL 479

Query: 7232 REKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGT--LASINEIAAFFRMICARPFLR 7059
               L      ++ ++       LA + Y  +  SD T  ++     +    +I     L 
Sbjct: 480  LS-LTNQRQSILALNAASFSKGLAQV-YTKMCTSDCTRRISRFEVHSVLSNLILDGSHLL 537

Query: 7058 PAKWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKYLTVHPNGG 6879
            P    + +L        +   + +   + V  Y+  IG++WFR N + +  Y+ +    G
Sbjct: 538  PKAACLRELAKSEYFDAIVRKIVALVTQKVRLYFHEIGILWFRSNFRGFTNYIGMQGESG 597

Query: 6878 TTYSKLMQNW-GVVCSEVSLGALKLKKTDNFSWLRCGGRKVPECTQAEETNVPPPEEKEA 6702
            TT+  L +++   V      G +   K   +       R  P  T          E++E 
Sbjct: 598  TTFKDLHKSYQSAVVDFFRFGVIPPLKKCRYVHDVSYNRVSPLTT----------EQREQ 647

Query: 6701 NTESVNEPHFSSEPPPMYEYKEETSATREVKCSCGLIITIEKDPSASLHKFQTPDRLKNR 6522
             +E ++ P    +P  + +            CSCG+I  I+       H F   D L+ R
Sbjct: 648  VSEPIDVPVQEEQPLIVRDIGS-------ANCSCGIIFQIDSLVYQD-HNFIATDNLRGR 699

Query: 6521 NAGFYSKS-GKGYVYNGGAHQSLNWPKWLNSWMTLLGIPEEYNCCLVQRYDGGGGIGLHS 6345
             AG+Y++     Y YNGG+H S  WP WL  W  +  +  +Y+ CL Q Y  G  IG H+
Sbjct: 700  RAGWYTRDCNVDYKYNGGSHISRGWPDWLRLWCEVNEVDLKYDSCLFQEYSFGASIGFHA 759

Query: 6344 DDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDGVN--FALNSGEYFEMPRGFQETHKH 6171
            DDE  F +G  + TVN+ G A F I        DG N    L     F MP  FQE+HKH
Sbjct: 760  DDEPIFARGEEILTVNLCGTADFCI------RGDGCNGVIELQGPAKFTMPHNFQESHKH 813

Query: 6170 GVGSTSKGRLSVTFRIMRDERETPETHSGTNGNHDAEPEGGANSPKNETHFENDEEQSNS 5991
             V + S+ R SVTFR+++                                          
Sbjct: 814  SVRNCSERRQSVTFRVLKK----------------------------------------- 832

Query: 5990 DEANQDATSESDCGHSEEPQEQSGDQRKNRGAEASTEGFTRNFNGCKVSVCTGILSHTYN 5811
             EA      + DC    EP+                 GF R+F    V +        Y 
Sbjct: 833  -EAEIILKIQEDCEIEIEPRA----------------GFERSFCEIDVKISELDTEMEYK 875

Query: 5810 TVDCGGGGNCFWLCLANEVGSEYTLSKKLALRHDLGSAGANLEALKCAGEGVYAVDEAIA 5631
             V+  G GNCFW C+ + +  + T+ KK AL  +L +        +  G   +A DEAI 
Sbjct: 876  EVNVPGDGNCFWHCMGHALCIDATVLKKRALNVELDTPELCARLKEQGGIDCFAEDEAIM 935

Query: 5630 CAACTFKIAIRVYQPDEKITTIFEPTRSDRVLHLELKDEHFRIMRIVNGCVIRAISSALN 5451
              A   + AI V+ P++ I   + P      + L L  EHF ++   NGCV+ AI++A+ 
Sbjct: 936  ACAIESRTAIFVHCPEQDICVRYCPKVQKSRVQLMLVKEHFTLLLPKNGCVVEAIANAIG 995

Query: 5450 RTECEIMHVIEENCDATMVEDLWKGGGVDLGVFQALLELFSIKALIFENGKEVLYNREGR 5271
            R   E++HVI E CD ++ +++W G GV     + L  LF I+A +FE     + N+ GR
Sbjct: 996  RNPTEVLHVINEQCDESITKEIWAGDGVSKLDLECLFTLFGIEAQLFEGSNVKVLNQGGR 1055

Query: 5270 FGASFEINGDHIEHTLRKKSACGRLFEECGQKVGVKAESLELLNKAGTNIRYQSTLARAR 5091
              A FE+  DHI ++ R+K+    +  + G    +     E L+ AGT + Y ++ +RA 
Sbjct: 1056 NRACFELEKDHISYSPRRKAVAALVLRDAGFSSRISDTQFEFLSNAGTQLFYLASKSRAE 1115

Query: 5090 RLADSLCAGATGVVSSSLFNKRPNLAGKFRVNTEVLGRDVLAVIGTFGSGKSTILKNFFK 4911
             L+  L  G+TG++SSSLF+ + NL  +     + + RDV+ + GTFGSGKST+LK FFK
Sbjct: 1116 LLSQCLLDGSTGIISSSLFDGKKNLL-RNSEERQTVPRDVVGIFGTFGSGKSTMLKKFFK 1174

Query: 4910 INLGRKVLYVSPRKALLEEFYINVCGVARXXXXXXXXXXXQENWDFMTFESFILSCSTLP 4731
             N  + + Y+SPRKAL EEF   +    R           QE+W   TFE F+ +     
Sbjct: 1175 ANPRKMITYISPRKALAEEFKKMLSLNVR--NQQTRKKLGQEHWTVSTFEKFLQNAELTK 1232

Query: 4730 AGMAVILDEIQLYPPGYLDMLCYLINDGVHIVVAGDPAQSDYDSEKDRVWLHGIEPDHSK 4551
            +G  +I DEIQLYPPGYLD++ YL+   V IVVAGDP QSDYDSEKDR++L  IE D  +
Sbjct: 1233 SGCVLIFDEIQLYPPGYLDLVSYLVPADVRIVVAGDPCQSDYDSEKDRLFLGMIEADFKR 1292

Query: 4550 LLSGQVYKYVTLSKRMQNSMFIGRLPCTF-NIPKTSDADEDFEVRGGIEIIHKIEAKWKE 4374
            LL+G  Y +V  SKR  N  FI RLPC+F N+  T D  E++ +  G++ + KI  ++ E
Sbjct: 1293 LLTGASYNFVIQSKRFINPNFIDRLPCSFGNLGGTKD-KEEYLMYDGVDGLAKIPEQFLE 1351

Query: 4373 CYLVSSFEEKRLVEYYQDEKGKREEKVLTFGESTGLTFNYGCILITQSSEKTNEQRWVTA 4194
              LVSSF+EK++V  Y  +    +  V+TFGESTGLTF+YG ++I+  S  T+EQRWVTA
Sbjct: 1352 AILVSSFDEKKIVYSYIGQ----DSNVMTFGESTGLTFDYGTVIISSVSSMTSEQRWVTA 1407

Query: 4193 LSRFRKSICFINATGMSLHELLLVYRDRALGRFLGKRADVEDLRKFL 4053
            LSRF+K+IC +N T +   +L L YR + L +FL   A V DL  FL
Sbjct: 1408 LSRFKKNICLVNLTNVLWSQLALDYRGKVLHKFLTGTASVTDLSAFL 1454



 Score =  727 bits (1876), Expect = 0.0
 Identities = 357/484 (73%), Positives = 406/484 (83%)
 Frame = -1

Query: 4047 AGDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEAR 3868
            AGDPWLK MI L Q ED         E+ +E+WFKTHLPQ +LE VRA WVHKI+AKE R
Sbjct: 1480 AGDPWLKGMIFLGQAEDCEEIQEIATEV-KEQWFKTHLPQADLEGVRATWVHKIMAKEMR 1538

Query: 3867 EVRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPL 3688
            EVR+G +VS+QF DEHSK+ GKQLTNAAERFE IYPRHR++DTVTF+MAV+KRLRFS P 
Sbjct: 1539 EVRLGYLVSDQFTDEHSKQLGKQLTNAAERFETIYPRHRANDTVTFIMAVKKRLRFSNPA 1598

Query: 3687 VEVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIR 3508
             E+ KL  AK YG  LL +FLK +PLK   D ++M  A+  FE KK SKSAA IENHS R
Sbjct: 1599 KEMGKLGQAKLYGKFLLDEFLKKIPLKRQHDKVMMDAARQAFEDKKTSKSAATIENHSNR 1658

Query: 3507 STRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRES 3328
            S RDWLIDIG IFSKSQ+CTKF+ RF  AKAAQSIVCFQH VL RFAPYMRYIE+KL E 
Sbjct: 1659 SCRDWLIDIGLIFSKSQLCTKFDNRFRVAKAAQSIVCFQHEVLCRFAPYMRYIEMKLHEV 1718

Query: 3327 LPDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQ 3148
            LP  +YIHSGKGLEEL+ WV    F+GVCTESDYEAFDASQDQYIVAFE+A+M YLGLPQ
Sbjct: 1719 LPSNYYIHSGKGLEELNDWVLRGKFEGVCTESDYEAFDASQDQYIVAFEMAVMKYLGLPQ 1778

Query: 3147 SLIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGD 2968
            SLI DY +IKTHLGSKLG+FAIMRFSGEASTFLFNTMANMLFTF+RY I  ++ ICFAGD
Sbjct: 1779 SLINDYVFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYEIKGNEFICFAGD 1838

Query: 2967 DMCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAK 2788
            DMCASR+LP+ KE++ FLSKLKLKAKV FT KPTFCGWNL+PDGIYKKPQLV+ERMCIAK
Sbjct: 1839 DMCASRRLPIKKEHDGFLSKLKLKAKVAFTNKPTFCGWNLTPDGIYKKPQLVMERMCIAK 1898

Query: 2787 ETNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVY 2608
            ETNNL NCIDNYAIEVSYAY++GEKA+NRMDEEE AA YNCVRII+KN+HLL+S+V+ +Y
Sbjct: 1899 ETNNLANCIDNYAIEVSYAYRLGEKALNRMDEEEAAAMYNCVRIIIKNKHLLKSDVATLY 1958

Query: 2607 GNRA 2596
              ++
Sbjct: 1959 TTKS 1962


>dbj|BAF95196.1| replicase [Chrysanthemum virus B]
          Length = 2094

 Score = 1034 bits (2673), Expect = 0.0
 Identities = 610/1595 (38%), Positives = 861/1595 (53%), Gaps = 59/1595 (3%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            M+LTYRSP+ + +  +D S+ + IA+T+A +Y++ E  NF  FNY + P   +HLI AGI
Sbjct: 1    MSLTYRSPLEENVGAYDSSVQAAIASTSANYYREAEVNNFQFFNYYLRPIAKRHLIEAGI 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSP+S VPHSH ACKTLEN++LY VLP  +DN F+FVGIK  KL  LK R+   + +  
Sbjct: 61   YLSPYSAVPHSHAACKTLENHLLYNVLPPLVDNRFHFVGIKQSKLEFLKLRNSKLSTISK 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            INR+VTS DK RY SDFV + SKPH G  RH + +E PTLRDL+P L  R  K LFLHDE
Sbjct: 121  INRFVTSADKARYGSDFVKKVSKPHVGFKRHELQVETPTLRDLLPSLKEREAKYLFLHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            +HYW   +L TFLEV++P+VV  T+VYPPE+L G+  SL+ WCYT+++ G+ L FYPDGV
Sbjct: 181  IHYWDPKQLITFLEVIRPEVVYATLVYPPEILSGATMSLHKWCYTFKIVGKDLLFYPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
             +EGY+Q +  G+LL+  +I L +G +YMVD++ SKFAHHLIS+TRGE     +RS+GPF
Sbjct: 241  LSEGYQQKIKNGYLLKARRIVLPNGDVYMVDLIHSKFAHHLISITRGELLSTDIRSFGPF 300

Query: 7772 EATACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 7593
            EATAC+GL+PLVR++S  FP+ Y VVS+ Y YL TLRKPD QSSMAKL QL+  PTG E+
Sbjct: 301  EATACSGLEPLVRNMSNCFPVPYSVVSRTYLYLSTLRKPDIQSSMAKLRQLVDEPTGIEM 360

Query: 7592 VFEQEFSKLVISTNSIKTMISADRLKIFMGKYLSRLPKVIAERFDTVKEISLHEFIKNLE 7413
             F ++F+ LVIS + I+TMI   R+K+F G++  +LPK IA + + VK +SL +F+  + 
Sbjct: 361  KFVKDFAALVISASDIQTMICPQRVKLFFGRWCKQLPKFIATKLEVVKTVSLDDFVTFMA 420

Query: 7412 PFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGYYMT 7233
            P+  DV L+ + +N      L D   AD  +    ++D+ F +G    + DR +  Y   
Sbjct: 421  PYCFDVQLETVDFNYDGFFPLYDVAEADFGVALPELIDETFTMGNVAVLCDRITRPYVGR 480

Query: 7232 REKLRALGGPLIEVDREVLKVTLAS--------ICYKSLSNSDGTLASINEIAAFFRMI- 7080
             ++       ++E    +LK+  AS        I     SN    +++       F +  
Sbjct: 481  HDRA------IVEKKETLLKIREASLKRLVINLIIGNCFSNGIYQISASKTTVYIFHIFE 534

Query: 7079 -CARPFLRPAKWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKY 6903
             C+   L P K     L              S  AR V   W    L+WF    +     
Sbjct: 535  NCSN-LLIPLKEVFRKLNNKEWVSEAIQIAISHMARRVKITWFWSTLLWFLSETRLNVWS 593

Query: 6902 LTVHPNGGTTYSKLMQNWGVVCSEV--SLGALKLKKTDNFSWLRCGGRKVPEC------- 6750
            L   P G       +  +  + S++  S    KL K      LR    K+ EC       
Sbjct: 594  LDDKPEGKAMPRDFILQFATIVSDITGSCNRQKLIKRGCPPQLRYCRAKLGECDKCKGTD 653

Query: 6749 -------------TQAEETNVPPPEEKEANTESVNEPHFSSE---PPPMYEYK----EET 6630
                         T  +  N P   E     E  + P    +   PP   E+K    EE 
Sbjct: 654  GKRNVENGASEGATPEQHANNPEATETSEGNEMPDSPADQGDGSCPPAAEEHKTSGFEEV 713

Query: 6629 SATREVKCSCGLIITIEKDPSASLHKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNW 6450
                 + C CGL I +      S H F+ PD+LK R AG+YS  G  Y YNGG+H SL W
Sbjct: 714  VELPPLLCICGLCIGVSTMRLPSGHNFKAPDQLKKRKAGWYSLGGVPYHYNGGSHTSLGW 773

Query: 6449 PKWLNSWMTLLGIPEEY-NCCLVQRYDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFS 6273
            P W+  WM   GI   Y NCCL Q Y+ GG IG H D+E  F  G+ V T N++G A F 
Sbjct: 774  PDWIRDWMFCNGIDSNYYNCCLYQVYEKGGAIGFHQDNESIFEVGSMVHTCNLDGHASFG 833

Query: 6272 IACKGVRHSDGVNFALNSGEYFEMPRGFQETHKHGVGSTSKGRLSVTFRIMRDERE---T 6102
            I C         ++ L  G +F MP  FQ THKH + + S  R S+TFR M+        
Sbjct: 834  IMCT----KRATDYDLKPGTHFTMPENFQLTHKHALLNCSANRASLTFRRMKTSGSGHGD 889

Query: 6101 PETHSGTNGNHDAEPEGGANSPKNETHFENDEEQSNSDEANQDATSESDCGHSEEPQEQS 5922
                  TNG    + EG  +S K+E   +N        E   +  +    G +  P + +
Sbjct: 890  SAQKGTTNGGVAEDEEGKTSSGKDEPPVDNSSSFGEETEDVPNGRTAETPGMTR-PTQVN 948

Query: 5921 GDQRKNRGAEAST-EGFTRNFNGCKVSVCTGILSHTYNTVDC-GGGGNCFWLCLANEVGS 5748
            G+ +   GA +             K+  C   L+       C  G GNCFW  L      
Sbjct: 949  GNGKTGGGASSDVLHELDLELGHLKIRACPAALNLDNFVRHCVAGDGNCFWYSLEKATAL 1008

Query: 5747 EYTLSKKLALRHDLGSAGANLEALKCAGEGVYAVDEAIACAACTFKIAIRVYQPDEKITT 5568
            ++   K++A R          +      EG +A DEAI CA  T K  I +Y  +++   
Sbjct: 1009 QWNSVKEIAARCMFTQNELQEKKEAQFHEGAFAEDEAIICAVATLKKNIIIYVEEQRAVY 1068

Query: 5567 IFEPTRSDR-VLHLELKDEHFRIMRIVNGCVIRAISSALNRTECEIMHVIEENCDATMVE 5391
             +    S+   ++L L++EHF  +   N C++ AI+ ALNR   E++ V+E    + +  
Sbjct: 1069 EYAGICSNADSIYLLLRNEHFEYIEPKNSCLLHAIAHALNRQFHEVLTVVERVLGSCLSG 1128

Query: 5390 DLWKGGGVDLGVFQALLELFSIKALIFENGKEVLYNREGRFGASFEINGDHIEHTLRKKS 5211
            + W G G+D+   +    LF I+A +        YN EGR  A+F ++  HI ++ +  S
Sbjct: 1129 ETWVGQGIDVADLEFYFGLFDIRACVISGPSAATYNEEGRVVANFILSDGHITYSSKNPS 1188

Query: 5210 ACGRLFEECGQKVGVKAESLEL--LNKAGTNIRYQSTLARARRLADSLCAGATGVVSSSL 5037
               ++ +  G++ G+   +  +  LN  GT + Y++ L RAR LADSL AG+TG++SS L
Sbjct: 1189 VDIKILK--GEQTGLSVSNTSVIELNANGTMLTYRAELGRARVLADSLEAGSTGIISSKL 1246

Query: 5036 FNKRPNLAGKFRVNTEVLGRDVLAVIGTFGSGKSTILKNFFKINLGRKVLYVSPRKALLE 4857
            FN+RPNL  + R         V  ++GTFG+GKS++   F K N G+ V YVSPRKAL +
Sbjct: 1247 FNQRPNLGAQIRTEGGFKDSQVCCILGTFGAGKSSLFTEFTKKNPGKGVFYVSPRKALAQ 1306

Query: 4856 EFYINVCGVAR----------XXXXXXXXXXXQENWDFMTFESFILSCSTLPAGMAVILD 4707
            E       + +                      ++W  +TFE+F+     +  GMA+I+D
Sbjct: 1307 EHESKCMSLGKRRAGTFGRETKERGNRERLGVAKHWKTLTFETFLKQVHMVKPGMALIID 1366

Query: 4706 EIQLYPPGYLDMLCYLINDGVHIVVAGDPAQSDYDSEKDRVWLHGIEPDHSKLLSGQVYK 4527
            EIQLYPPGYLD++C L+ +GVHI V GDP QSDYD+E+DR WL  +  D  +LL GQ YK
Sbjct: 1367 EIQLYPPGYLDLVCLLLVEGVHIYVGGDPCQSDYDNERDRAWLSSMRSDIEQLLEGQNYK 1426

Query: 4526 YVTLSKRMQNSMFIGRLPCTFNIPKTSDA-DEDFEVRGGIEIIHKIEAKWKECYLVSSFE 4350
            +   S R  N  F GRLPC       ++   E+  +  G E + +I  ++ + +LVSSFE
Sbjct: 1427 FNVQSHRFNNENFRGRLPCEIVSKDVAETLSEEHLLYTGCEELVQIMDEYSKIFLVSSFE 1486

Query: 4349 EKRLVEYYQDEKGKREEKVLTFGESTGLTFNYGCILITQSSEKTNEQRWVTALSRFRKSI 4170
            EK++VE +     +R  KV TFGESTGL F  G I+IT  S  T+E+RW+TALSRF +++
Sbjct: 1487 EKKIVETHFPMNEQR--KVYTFGESTGLNFKVGTIIITNVSAATSEKRWLTALSRFSENV 1544

Query: 4169 CFINATGMSLHELLLVYRDRALGRFLGKRADVEDL 4065
            CF+N  G   + L  +Y+ RALG FL +RA ++DL
Sbjct: 1545 CFVNLLGTDWNGLFGLYKHRALGLFLSRRAQLKDL 1579



 Score =  716 bits (1849), Expect = 0.0
 Identities = 354/481 (73%), Positives = 401/481 (83%)
 Frame = -1

Query: 4044 GDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEARE 3865
            GDPWLK MIDL Q ED          + +EEWFKTHLPQ +LE VRARWVHKI+ KEARE
Sbjct: 1610 GDPWLKCMIDLGQTEDVEEVELLEE-VMQEEWFKTHLPQADLEGVRARWVHKIMLKEARE 1668

Query: 3864 VRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPLV 3685
            VRMGDIVSEQF D++ KE G  LTNAAERFE IYPRHR+SDTVTF+MAV+KRLRFS+P V
Sbjct: 1669 VRMGDIVSEQFTDDYPKELGTNLTNAAERFETIYPRHRASDTVTFLMAVKKRLRFSRPAV 1728

Query: 3684 EVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIRS 3505
            E  KL+ AK YG  LL +FLK VPLK   +  +M +AK +FE KK SKSAAIIENH+ RS
Sbjct: 1729 EKAKLQEAKLYGKFLLNEFLKKVPLKQAHNTNMMERAKFDFEEKKTSKSAAIIENHAGRS 1788

Query: 3504 TRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRESL 3325
             RDWLID+G IFSKSQ+CTKF+ RF  AKAAQSIVCFQH+VL RFAPYMRYIE KL E+L
Sbjct: 1789 CRDWLIDVGLIFSKSQLCTKFDNRFRGAKAAQSIVCFQHAVLCRFAPYMRYIEAKLHEAL 1848

Query: 3324 PDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQS 3145
            P RFYIHSGKGL+EL+ WV    F+G+CTESDYEAFDASQDQYIVAFELALM YLGLP+ 
Sbjct: 1849 PSRFYIHSGKGLDELNEWVIKGKFEGICTESDYEAFDASQDQYIVAFELALMEYLGLPRD 1908

Query: 3144 LIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGDD 2965
            LI DY +IK HLGSKLG+FAIMRFSGEASTFLFNTMANMLFTF+RYNI +S++ICFAGDD
Sbjct: 1909 LIEDYAFIKCHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYNIKDSEHICFAGDD 1968

Query: 2964 MCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAKE 2785
            MCAS +L + K++E FLSKLKLKAKV F  KPTFCGW+L  DGIYKKPQLVLERMCIAKE
Sbjct: 1969 MCASERLCIKKDHEGFLSKLKLKAKVFFVDKPTFCGWHLCSDGIYKKPQLVLERMCIAKE 2028

Query: 2784 TNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVYG 2605
             NNL NC+DNYAIEVSYAYK+GE+AVNRMDEEEL A YNCVRII+KN+ LL+S++   Y 
Sbjct: 2029 KNNLANCLDNYAIEVSYAYKLGERAVNRMDEEELEAAYNCVRIIIKNKKLLKSDILSFYS 2088

Query: 2604 N 2602
            +
Sbjct: 2089 S 2089


>dbj|BAU20378.1| replicase [Daphne virus S]
          Length = 2004

 Score = 1024 bits (2647), Expect = 0.0
 Identities = 610/1553 (39%), Positives = 851/1553 (54%), Gaps = 13/1553 (0%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            MALTYRSP+ +++T +D SI   IA  +A HYK+ E  +F  F YA+ P+  ++L  AGI
Sbjct: 1    MALTYRSPMEEIMTVYDTSIQGAIAGISANHYKECETRDFKFFCYALDPEAKKNLTNAGI 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSPFS +PHSHP CKTLENY+LY VLP  +DNSF FVG+K FKL  LKAR  + +M++ 
Sbjct: 61   YLSPFSAMPHSHPVCKTLENYLLYKVLPSVVDNSFLFVGMKQFKLELLKARSSNLSMIEV 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            INRYVTS D++RY S FV+R SKP  GL RH   LE   L++LVPE+M RS K LFLHDE
Sbjct: 121  INRYVTSADRVRYDSTFVIRRSKPIEGLKRHAPGLESAPLKELVPEIMARSAKHLFLHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            LHYW   +L T LEV++P  +LGT+VYPPELL GS  SL+ WCY +EV G+   FYPDGV
Sbjct: 181  LHYWSHRDLITMLEVLKPDKLLGTLVYPPELLCGSTSSLHPWCYDFEVLGKDFFFYPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
            R+EGY QPL GGFLL   KI L  G +Y VD++ SKFAHHL+ LT+G+A     RS+G F
Sbjct: 241  RSEGYLQPLKGGFLLSTSKIHLSTGEVYCVDVIQSKFAHHLVCLTKGDAIALKYRSFGEF 300

Query: 7772 EATACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 7593
             AT C GL+P+ + +    P+SY ++S++YRYL++L+KPD QS+M+KL+QL+P PTG EI
Sbjct: 301  AATGCKGLNPMTKGLGSFIPVSYPIISRIYRYLRSLKKPDVQSAMSKLSQLVPEPTGIEI 360

Query: 7592 VFEQEFSKLVISTNSIKTMISADRLKIFMGKYLSRLPKVIAERFDTVKEISLHEFIKNLE 7413
             F Q+F+  VI T++I +MI   RLK+FMGK+L  LP  IA++F+T + + L +F+ ++ 
Sbjct: 361  KFTQDFANFVIETSAINSMIVPSRLKLFMGKWLGNLPGFIAQKFETARGVCLDDFVMSMA 420

Query: 7412 PFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGYYMT 7233
            P+T    L EI WN  + LEL     A+   D    +D KF  G  +   D++ A  Y  
Sbjct: 421  PYTYTCRLTEINWNTEYYLELMGRCEAELGQDVPENMDRKFLYGP-EGARDKRGAEPYTG 479

Query: 7232 REKLRALGGPLIEVDREVLKVTLASICYKS-LSNSDGTLASINEIAAFFRMICA--RPFL 7062
              KL     P+I V +  L   +A    +S L   +  ++    IA     +C      +
Sbjct: 480  LAKLVDRRSPVICVHKAHLVSLMARKTIESFLCERERKVSKRGVIADLRNWLCGIRASLI 539

Query: 7061 RPAKWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKYLTVHPNG 6882
             P    +  L        L   +     R  +  +  IGL WF  N + +Q+ LT +   
Sbjct: 540  FPIAHALEMLDDAPHVTELIRKILMLQRRRASLLFVEIGLFWFTSNFRGFQQMLTNYSEA 599

Query: 6881 GTTYSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRCGGRKVPECTQAEETNVPPPEEKEA 6702
                      W  V +++  G L+ +    + +                 +     EK+ 
Sbjct: 600  KVLPRCAGGYWATVVTDICAGNLRSRLKKKYYY-----------------HASSSSEKQG 642

Query: 6701 NTESVNEPHFSSEPPPMYEYKEETSATREVKCSCGLIITIEKDPSASLHKFQTPDRLKNR 6522
              +S       ++P        E    ++V CSCG+ + +        H FQ PD+L  R
Sbjct: 643  KAQSTTH---KTQPKGELTPCNEVKVKKQVSCSCGVTMELRSPVETLDHLFQAPDQLLGR 699

Query: 6521 NAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTLLGI-PEEYNCCLVQRYDGGGGIGLHS 6345
             AG+YS+ G  Y Y G +H++L W  W++ W+ +L + PE YN CL Q Y+    +  HS
Sbjct: 700  RAGWYSRDGHNYNYTGASHKNLGWATWMDEWLRVLDLDPEYYNSCLYQVYEADAILNWHS 759

Query: 6344 DDEKCFIKGTPVFTVNIEGEARFSIACK-GVRHSDGVNFALNSGEYFEMPRGFQETHKHG 6168
            DDE  F  G  + TVN+ G A F + C  G R ++   F +     FEMP  FQ THKH 
Sbjct: 760  DDEGLFENGGKIVTVNLSGSAIFHVKCSTGCRTNELTGFGV-----FEMPTHFQSTHKHK 814

Query: 6167 VGSTSKGRLSVTFRIMRDERETPETHSGTNGNHDAEPEGGANSPKNETHFENDEEQSNSD 5988
            + +TS GR SVTFR  R  R    T SG  G  +A    GA    N       +  +   
Sbjct: 815  LSNTSSGRESVTFR--RTVRYCAATESGVLGKSEASE--GAQEIAN---VRVADRFTMGV 867

Query: 5987 EANQDATSESDCGHSEEPQEQSGDQRKNRGAEASTEGFTRNFNGCKVSVCTGILSHTYNT 5808
            E N  A+S S                 + G +     F R++ G  +             
Sbjct: 868  EGNDSASSCS-----------------SEGVDEKGPTFRRHYAGVDIESSLYKDDRKKKI 910

Query: 5807 VDCGGGGNCFWLCLANEVGSEYTLSKKLALRHDLGSAGANLEALKC-AGEGVYAVDEAIA 5631
            V+  G G+CFW C++  + +E  + K+ A + +LGS   N EAL+   G+ VYA DEAIA
Sbjct: 911  VNVPGDGDCFWHCISRVMSNEMQIMKEKAGKVNLGSKSLN-EALQFQMGDQVYAQDEAIA 969

Query: 5630 CAACTFKIAIRVYQPDEKITTIFEPTRS-DRVLHLELKDEHFRIMRIVNGCVIRAISSAL 5454
             A+  F   I VYQP E + T F PT      ++L  + +HF I+   N CV RAI++A 
Sbjct: 970  AASACFSARINVYQPTECVLTRFTPTNGVKHEINLINEFDHFTIIEPANCCVPRAIAAAY 1029

Query: 5453 NRTECEIMHVIEENCDATMVEDLWKGGGVDLGVFQALLELFSIKALIFENGKEVLYNREG 5274
             R   E++ +I ENCD ++  ++W G GV+      L E F I A + ++G   ++N  G
Sbjct: 1030 KRPLSEVLSIIHENCDESVSAEIWNGEGVNEMHMLLLFECFDICAEVIQDGVSTMFNETG 1089

Query: 5273 RFGASFEINGDHIEHTLRKKSACGRLFEECGQKVGVKAESLELLNKAGTNIRYQSTLARA 5094
            R   SF +   H+    + K A          ++ +   S   L +  T + Y++T  RA
Sbjct: 1090 RVRFSFHLEEKHLTFMEKTKIASAPSLRYERPELSLPLASQRALAQIATKLTYKATELRA 1149

Query: 5093 RRLADSLCAGATGVVSSSLFNKRPNLAGKFRVNTEVLGRDVLAVIGTFGSGKSTILKNFF 4914
            + L+ SL  G TGV+SS+LFN R NL            RDV  ++GTFG+GKST L NFF
Sbjct: 1150 KVLSRSLFEGTTGVISSNLFNGRLNLMQHGETLPPEKARDVFCLMGTFGAGKSTHLANFF 1209

Query: 4913 KINLGRKVLYVSPRKALLEEFYINV------CGVARXXXXXXXXXXXQENWDFMTFESFI 4752
            K+N GR + YVSPRK L E+F   +       G+ R           QE+W   TFE  +
Sbjct: 1210 KMNKGRMITYVSPRKVLAEDFEKRIGLEKREKGLGR-EIAGQRKKLGQEHWRVKTFEQAL 1268

Query: 4751 LSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHIVVAGDPAQSDYDSEKDRVWLHG 4572
            L  + +  G  +ILDEIQLYPPGYLD++CYL+ +   I VAGDP QSDYD+EKDR     
Sbjct: 1269 LEHTKIREGSCLILDEIQLYPPGYLDLVCYLVPERTIIAVAGDPCQSDYDNEKDRFIFTA 1328

Query: 4571 IEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCTFNIPKTSDADEDFEVRGGIEIIHKI 4392
            +E D + LL  Q Y Y+  S R QN +F GRLP    IP++++  E + +  G+E     
Sbjct: 1329 MEADFTVLLKDQEYNYMIRSLRFQNQIFSGRLPSKLCIPQSAEVIE-YGLYTGVEAFGYK 1387

Query: 4391 EAKWKECYLVSSFEEKRLVEYYQDEKGKREEKVLTFGESTGLTFNYGCILITQSSEKTNE 4212
            +      YLVSSFEEK+++E +      ++  VLTFGESTG+TF    I++T +S   +E
Sbjct: 1388 DVIDARNYLVSSFEEKKIIEAF----CVKQVNVLTFGESTGMTFESVNIVLTTASFGASE 1443

Query: 4211 QRWVTALSRFRKSICFINATGMSLHELLLVYRDRALGRFLGKRADVEDLRKFL 4053
            +RW+TALSR RK++ FIN      + L+  Y  R L  FL   A VEDL K+L
Sbjct: 1444 RRWLTALSRSRKNLNFINLGHFDWNALVKCYEGRFLAGFLTGTAKVEDLLKYL 1496



 Score =  708 bits (1828), Expect = 0.0
 Identities = 351/480 (73%), Positives = 398/480 (82%)
 Frame = -1

Query: 4047 AGDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEAR 3868
            AGDPWLK MIDL Q ED          I +E WFK HLP+ ELES+RARW H+  AKE R
Sbjct: 1522 AGDPWLKGMIDLGQSEDVEEIEIEEA-ILQESWFKVHLPRAELESIRARWEHRFKAKEHR 1580

Query: 3867 EVRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPL 3688
            EVRMG +VSEQF DEHSK+KG++L NAA RFEAIYPRHR+SDTVTF+MAV+KRLRFS+P 
Sbjct: 1581 EVRMGYLVSEQFTDEHSKQKGRELANAATRFEAIYPRHRASDTVTFIMAVKKRLRFSQPA 1640

Query: 3687 VEVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIR 3508
             E+ KL  A+ YG  LL +FLKHVPLK   +P +MAQAK  FE KK SKSAA IENH+ R
Sbjct: 1641 KEMGKLLEARLYGKFLLDQFLKHVPLKKAHNPEMMAQAKAAFELKKTSKSAATIENHANR 1700

Query: 3507 STRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRES 3328
            S RDWLID+G IFSKSQ+CTKF+ RF  AKAAQSIVCFQH VL RFAPY+RYIE+KL E 
Sbjct: 1701 SCRDWLIDVGLIFSKSQLCTKFDNRFRDAKAAQSIVCFQHEVLCRFAPYIRYIEMKLNEV 1760

Query: 3327 LPDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQ 3148
            LPDRFYIHSGKGLEEL+ WV  H F GVCTESDYEAFDASQDQYIVAFELA+M YLGLP+
Sbjct: 1761 LPDRFYIHSGKGLEELNDWVVKHNFSGVCTESDYEAFDASQDQYIVAFELAVMEYLGLPR 1820

Query: 3147 SLIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGD 2968
             LI DY YIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTF+RY I+ ++NICFAGD
Sbjct: 1821 DLINDYIYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFLRYEIHGNENICFAGD 1880

Query: 2967 DMCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAK 2788
            DMCAS++L +   +  FLSKLKLKAKV FT +PTFCGWNL+  GIYKKPQLVLER+CIAK
Sbjct: 1881 DMCASKRLQVKITHAKFLSKLKLKAKVDFTNRPTFCGWNLTKYGIYKKPQLVLERLCIAK 1940

Query: 2787 ETNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVY 2608
            ETNNL NCIDNYAIEVSYAYK+GE A+  M+EEE  A YNCVRIIVKN+H L+S++S+++
Sbjct: 1941 ETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLF 2000


>ref|YP_595727.1| replicase [Daphne virus S]
 emb|CAF04326.1| replicase [Daphne virus S]
          Length = 2004

 Score = 1018 bits (2633), Expect = 0.0
 Identities = 620/1563 (39%), Positives = 867/1563 (55%), Gaps = 23/1563 (1%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            MALTYRSP+ +++T +D SI   IA  +A HYK  E  +F  F YA+ P+  ++L  AGI
Sbjct: 1    MALTYRSPMEEIMTVYDTSIQGAIAGISANHYKDCETRDFKFFCYALEPEAKKNLTNAGI 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSPFS +PHSHP CKTLENY+LY VLP  +DNSF FVG+K FKL  LKAR+ + +MV+ 
Sbjct: 61   YLSPFSAMPHSHPVCKTLENYLLYKVLPSVVDNSFLFVGMKQFKLELLKARNSNLSMVEV 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            INRYVTS D++RY S FV+R SKP  GL RH   LE   L++LVPE+M RS K LFLHDE
Sbjct: 121  INRYVTSADRVRYDSTFVIRRSKPIGGLKRHAPGLESAPLKELVPEIMARSAKHLFLHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            LHYW   +L T LEV++P  +LGT+VYPPELL GS  SL  WCY +EV G+   FYPDGV
Sbjct: 181  LHYWSHRDLITMLEVLKPDKLLGTLVYPPELLCGSTSSLYPWCYDFEVLGKDFFFYPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
            R+EGY QPL GGFLL   KI L  G +Y VD++ SKFAHHL+ LT+G+A     RS+G F
Sbjct: 241  RSEGYLQPLKGGFLLSTSKIHLSTGEVYCVDVIQSKFAHHLVCLTKGDAIALKFRSFGEF 300

Query: 7772 EATACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 7593
             AT C GL P+ + +    P+SY ++S++YRYL++L+KPD QS+M+KL+QL+P PTG EI
Sbjct: 301  AATGCKGLSPMTKGLGSFIPVSYPIISRIYRYLRSLKKPDVQSAMSKLSQLVPEPTGIEI 360

Query: 7592 VFEQEFSKLVISTNSIKTMISADRLKIFMGKYLSRLPKVIAERFDTVKEISLHEFIKNLE 7413
             F Q+F+  VI T++I +MI   RLK+FMGK+L  LP  IA+RF+T + + L +F+ ++ 
Sbjct: 361  KFIQDFANFVIETSTINSMIVPSRLKLFMGKWLKNLPGFIAQRFETARGVCLDDFVMSMA 420

Query: 7412 PFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGYYMT 7233
            P+T    L EI W+  + LEL     A+   D    +D K+  G   A  DR+ A  Y  
Sbjct: 421  PYTYTCRLTEIDWSTEYYLELAGRCEAEFEQDVPENMDRKYLYGPEGA-KDRRGAEPYTG 479

Query: 7232 REKLRALGGPLIEVDREVLKVTLASICYKS-LSNSDGTLASINEIAAFFRMIC--ARPFL 7062
              K      P+I V +  L   +A    +S L   +  ++    +A     +C      +
Sbjct: 480  LAKWADGRSPVICVHKSHLTSMMARKTIESFLCERERKVSRKRVVAELRTWLCDIRTSLI 539

Query: 7061 RPAKWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKAYQKYLTVHPNG 6882
             P    +  L        L   +     R  +  + +IG +WF  N + +Q  LT +   
Sbjct: 540  FPITHTLEMLDDVLQVDSLIRKILMLQRRRASLLFVDIGALWFLSNFRGFQLKLTNYSEA 599

Query: 6881 GTTYSKLMQNWGVVCSEVSLGALK--LKKTDNFSWLRCGGRKVPECTQAEETNVPPPEEK 6708
                 +  + W VV +E+  G L+  LK+   +      G++                 +
Sbjct: 600  KVLPREAGELWAVVVAEIGNGDLRKGLKRKYYYHASAHAGKQ--------------GRTQ 645

Query: 6707 EANTESVNEPHFSSEPPPMYEYKEETSATREVKCSCGLIITIEKDPSASLHKFQTPDRLK 6528
            +A  E+ +E   SS          E +  + V C+CG+ + ++       H FQ PD L+
Sbjct: 646  DAVQETWSEGASSS--------CGECNVQKYVSCACGVTMELKSPVETLDHLFQAPDPLR 697

Query: 6527 NRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTLLGI-PEEYNCCLVQRYDGGGGIGL 6351
             R AG+YS+ G  Y Y G +H+SL W  W++ W+ +L + P  YN CL Q Y+    +  
Sbjct: 698  GRRAGWYSRDGHDYNYTGASHKSLGWAAWMDEWLKVLDLDPNYYNSCLYQVYEADATLNW 757

Query: 6350 HSDDEKCFIKGTPVFTVNIEGEARFSIAC-KGVRHSDGVNFALNSGEYFEMPRGFQETHK 6174
            HSDDE  F KG  + TVN+ G A F + C  G R ++ V F +     FEMP  FQ THK
Sbjct: 758  HSDDESLFEKGGRIATVNLSGSAVFHVKCMNGCRANELVGFGV-----FEMPADFQSTHK 812

Query: 6173 HGVGSTSKGRLSVTFRIMRDERETPETHSGTNGNHDAEPEGGANSPKNETHFENDEEQSN 5994
            H + + S GR SVTFR  R  +++  T S    NH    EGG                  
Sbjct: 813  HKLSNPSNGRESVTFR--RTAQQSVTTGSENFSNH----EGG------------------ 848

Query: 5993 SDEANQDATSESDCGHSEEPQEQSGDQRKNRGAEASTEG-------FTRNFNGCKVSVCT 5835
              E+NQ+     D   ++E     G +R +  + +S+EG       F R++ G  V++ +
Sbjct: 849  --ESNQEVV---DVRVADE--FTMGVERSDGSSASSSEGVKNDELIFKRHYAG--VNIES 899

Query: 5834 GIL--SHTYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRHDLGSAGANLEALKCAGE 5661
            GI         +   G G+CFW C++  + +E  L+K+ A R DLGS   N       GE
Sbjct: 900  GICHDDRMKKIIKVPGDGDCFWHCVSRVMSNELRLTKEKAGRVDLGSESLNDALQHQMGE 959

Query: 5660 GVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRSDR-VLHLELKDEHFRIMRIVNG 5484
             VYA DEAIA  +  F   I VYQP E + T F PT   +  ++L  + +HF I+   N 
Sbjct: 960  QVYAQDEAIAATSVCFSARINVYQPAECVLTKFIPTSGVKHEINLINEFDHFSIVEPANC 1019

Query: 5483 CVIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVFQALLELFSIKALIFEN 5304
            CV RAI++A  R+  EI+ VI E+CD ++  ++W G GV+      L E F I+A + + 
Sbjct: 1020 CVPRAIAAAYKRSLSEILAVIREHCDESVSSEIWNGEGVNEMHMLLLFECFDIRADVVQQ 1079

Query: 5303 GKEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKVGVKAESLELLNKAGTN 5124
            G   ++N  GR   SF +   H+    + K A          ++ +   S  +L +  + 
Sbjct: 1080 GVSTVFNEAGRVRFSFHLEDKHLTFLEKDKLASAPSLRYERPELSLPLASQHVLAQIASK 1139

Query: 5123 IRYQSTLARARRLADSLCAGATGVVSSSLFNKRPNLAGKFRVNTEVLGRDVLAVIGTFGS 4944
            + Y++T  RA+ L+ SL  G TGV+SS+LFN R +L        +   RDV  ++GTFG+
Sbjct: 1140 LTYKATELRAKVLSRSLFEGTTGVISSNLFNGRLDLMQHGETPPKEKSRDVYCLMGTFGA 1199

Query: 4943 GKSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVAR------XXXXXXXXXXXQEN 4782
            GKST L NFFK+N GR + YVSPRK L E+F   + G+ R                 QE+
Sbjct: 1200 GKSTHLANFFKMNKGRMITYVSPRKVLAEDFEKRI-GLERKEKGQGREAAGQRKKLGQEH 1258

Query: 4781 WDFMTFESFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHIVVAGDPAQSDYD 4602
            W   TFE  +L  + +  G  +ILDEIQLYPPGYLD++CYL+ D   I VAGDP QSDYD
Sbjct: 1259 WRVKTFEQALLEHTKIREGSCLILDEIQLYPPGYLDLMCYLVPDRTIIAVAGDPCQSDYD 1318

Query: 4601 SEKDRVWLHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCTFNIPKTSDADEDFEV 4422
            +EKDR     +E D   LL  Q YKY+  S R QN +F GRLP    IP+++   E + +
Sbjct: 1319 NEKDRFIFSAMEADFMVLLKDQEYKYMVRSLRFQNQIFSGRLPSKLCIPQSAGVIE-YGL 1377

Query: 4421 RGGIEIIHKIEAKWKECYLVSSFEEKRLVEYYQDEKGKREEKVLTFGESTGLTFNYGCIL 4242
              G+E     +      YLVSSFEEK+++E +      ++  VLTFGESTG+TF+   I+
Sbjct: 1378 YTGVEAFGYEDVIGARNYLVSSFEEKKIIETF----CVKQVNVLTFGESTGMTFDGVNIV 1433

Query: 4241 ITQSSEKTNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRALGRFLGKRADVEDLR 4062
            +T +S   +E+RW+TALSR RK I FIN      + L   Y+ R L  FL   A VEDL 
Sbjct: 1434 LTSASFGASERRWLTALSRSRKIINFINLGHFDWNALATCYKGRFLASFLAGTAKVEDLL 1493

Query: 4061 KFL 4053
            ++L
Sbjct: 1494 QYL 1496



 Score =  710 bits (1832), Expect = 0.0
 Identities = 351/480 (73%), Positives = 399/480 (83%)
 Frame = -1

Query: 4047 AGDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEAR 3868
            AGDPWLK MIDL Q ED          I +E WFK HLP+ ELES+RARW H+  AKE R
Sbjct: 1522 AGDPWLKGMIDLGQTEDIEEIELEEA-ILQEPWFKVHLPRAELESIRARWEHRFKAKEHR 1580

Query: 3867 EVRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPL 3688
            EVRMG +VSEQF DEHSK+KGK+LTNAA RFEAIYPRH++SDTVTF+MAV+KRLRFS+P 
Sbjct: 1581 EVRMGYLVSEQFTDEHSKQKGKELTNAATRFEAIYPRHKASDTVTFIMAVKKRLRFSQPA 1640

Query: 3687 VEVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIR 3508
             E+ KL  A+ YG  LL++FLKHVPLK   +P +MAQAK  FE KK SKSAA IENH+ R
Sbjct: 1641 KEMGKLLEARLYGKFLLEQFLKHVPLKKAHNPEMMAQAKAAFELKKTSKSAATIENHANR 1700

Query: 3507 STRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRES 3328
            S RDWLID+G IFSKSQ+CTKF+ RF  AKAAQSIVCFQH VL RFAPY+RYIE+KL E 
Sbjct: 1701 SCRDWLIDVGLIFSKSQLCTKFDNRFRDAKAAQSIVCFQHEVLCRFAPYIRYIEMKLNEV 1760

Query: 3327 LPDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQ 3148
            LPDRFYIHSGKGLEEL+ WV  H F GVCTESDYEAFDASQDQYIV FELA+M YLGLP+
Sbjct: 1761 LPDRFYIHSGKGLEELNDWVLKHDFSGVCTESDYEAFDASQDQYIVGFELAVMEYLGLPR 1820

Query: 3147 SLIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGD 2968
             LI DY YIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTF+RY I+ ++NICFAGD
Sbjct: 1821 DLINDYIYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFLRYEIHGNENICFAGD 1880

Query: 2967 DMCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAK 2788
            DMCAS++L +   +  FLSKLKLKAKV FT+ PTFCGWNL+  GIYKKPQLVLER+CIAK
Sbjct: 1881 DMCASKRLQVKNIHAKFLSKLKLKAKVDFTSHPTFCGWNLTKYGIYKKPQLVLERLCIAK 1940

Query: 2787 ETNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVY 2608
            ETNNL NCIDNYAIEVSYAYK+GE A+  M+EEE  A YNCVRIIVKN+H L+S++S+++
Sbjct: 1941 ETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLF 2000


>ref|YP_009022064.1| replicase [Gaillardia latent virus]
 gb|AHN84511.1| replicase [Gaillardia latent virus]
          Length = 1990

 Score = 1017 bits (2630), Expect = 0.0
 Identities = 612/1537 (39%), Positives = 845/1537 (54%), Gaps = 10/1537 (0%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            MALTYRSP+ + +  +D ++ S+IA+T+A +YK+ EE NF  FNY ++P   Q LI +GI
Sbjct: 1    MALTYRSPLEENVAAYDSNVQSLIASTSAHYYKEEEESNFKFFNYHLTPVAKQKLITSGI 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSPFS +PHSHP CKTLENY LYIV    LD+ FYFVGIK+ K+N LK R+   +MV  
Sbjct: 61   YLSPFSAMPHSHPVCKTLENYFLYIVAAPLLDSRFYFVGIKNHKINLLKTRNSDLSMVSK 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            INRYVTS DK+RY SDFV +       L+RHR  LEG TL+DLVP L     K +FLHDE
Sbjct: 121  INRYVTSADKVRYGSDFVTKPIYTGECLARHRSCLEGATLKDLVPALKEGKAKHVFLHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            LHYW   +L TFLE+V+P+++  T+VYP E+L G+  SL+ WCYT+++ G  L FYPDGV
Sbjct: 181  LHYWSPRDLITFLELVKPEIMYATLVYPAEILAGAAFSLHPWCYTFQIIGGKLIFYPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
            + E YEQPL+ G+LLE  +I +   +IYMVD++ SKFAHHLI++TR EA  P+ RS+GPF
Sbjct: 241  QTESYEQPLSCGYLLEAKRI-ITRHSIYMVDLVQSKFAHHLIAITRTEALSPNYRSFGPF 299

Query: 7772 EATACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 7593
            +AT+ + L PL+R  +   P+S+E+VS++YRYL+TL+KPD QS+MAKL+QLL  P G EI
Sbjct: 300  DATSSSALSPLMRTENNFIPVSFEIVSRVYRYLRTLKKPDVQSAMAKLSQLLQEPRGVEI 359

Query: 7592 VFEQEFSKLVISTNSIKTMISADRLKIFMGKYLSRLPKVIAERFDTVKEISLHEFIKNLE 7413
             F ++FS LVI+T +++++I  + +K+F+G++L RLP  +A +F  V E+SL +F+  +E
Sbjct: 360  KFIEDFSSLVINTGTVRSIIKPELVKLFLGRWLGRLPHALAVKFSGVSEVSLDDFVSQME 419

Query: 7412 PFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGYYMT 7233
            P+T  + L ++ WN     +L      D  +D  ++L++ F         DR  A YY  
Sbjct: 420  PYTFQIKLADVDWNYHHRWDLYSKAEEDYGVDASKLLEESFVANRLYEFGDRARAPYYSV 479

Query: 7232 REKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFF--RMICARPFLR 7059
            + +       ++E+  +  ++   S C + L N   +  S  E+      ++  ++  L 
Sbjct: 480  KGQKN--WHHILELRSDFDEMYFISTCLRELFNPTLSGISFYEVLGVLTGKLQASKSILI 537

Query: 7058 PAKWKVYDLYGPNGAIGLQAYMR--SRWARNVTFYWANIGLVWFRCNNKAYQKYLTVHPN 6885
              K  +  +  P        YMR  SR+A      WA+ G  WF  +++  Q+YL   P+
Sbjct: 538  STKSSIRQMQEPG---RYNVYMRAVSRYAPKHEREWASSGAKWFFVSDRHNQQYLCDQPD 594

Query: 6884 GGTTYSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRCGGRKVPECTQAEETNVPPPEEKE 6705
            G        + +G V  ++ L  +KL+K       R   +  PE T  E       + K 
Sbjct: 595  GIAVPKAFKKVFGTVVGDI-LAGVKLRKR-RVVGFRLAEQPTPETTSGEGEGGMRHDPKP 652

Query: 6704 ANTESVNEPHFSSEPPPMYEYKEETSATREVKCSCGLIITIEKDPSASLHKFQTPDRLKN 6525
             N     EP    E  P+    E+        C+CG+ +   +  +  LH F+ PD L N
Sbjct: 653  QNDA---EPIREEEAVPVVVQPEQLC---PAYCACGIELERSELIATDLHAFRAPDNLGN 706

Query: 6524 RNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTLLGIPEE-YNCCLVQRYDGGGGIGLH 6348
            R+ G+YS +G GY YNGG H SL WPKWL  WM L GI  + YNCCL Q Y  G  IG H
Sbjct: 707  RSGGWYSATGVGYKYNGGKHGSLGWPKWLGVWMQLNGIDSDYYNCCLYQVYKEGARIGFH 766

Query: 6347 SDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDGVNFALNSGEYFEMPRGFQETHKHG 6168
            SDDE  F +G  + T NI G A FS  C       G +  L+      MP GFQE+HKH 
Sbjct: 767  SDDEAIFEEGASILTCNITGSADFSFKCT----VGGNSQFLDGPMSILMPEGFQESHKHS 822

Query: 6167 VGSTSKGRLSVTFRIMRDER--ETPETHSGTNGNHDAEPEGGANSPKNETHFENDEEQSN 5994
            V   SKGR SVTFR +  E   E P                                   
Sbjct: 823  VSRCSKGRASVTFRRLAGEMIGEQP----------------------------------- 847

Query: 5993 SDEANQDATSESDCGHSEEPQEQSGDQRKNRGAEASTEGFTRNFNGCKVSVCTGILSHTY 5814
             +E  +   +E       E   +S +  +  G+E   E   RN  G  V+   GI +  Y
Sbjct: 848  IEELRKVCVAE-----QREQGPESSELPERSGSEQPGEFTQRNCIGV-VNHRHGIPNMNY 901

Query: 5813 NTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRHDLGSAGANLEALKCAGEGVYAVDEAI 5634
            N +D  G GNCFW CL+  V       K+   R D      N          V+A +EAI
Sbjct: 902  NLIDVPGDGNCFWHCLSKAVSMGVKELKQACTRIDFKDEELNTRFEHQMQPRVFAEEEAI 961

Query: 5633 ACAACTFKIAIRVYQPDEKITTIFEPTRSDRVLH-LELKDEHFRIMRIVNGCVIRAISSA 5457
              AA   +  I V  P+    + F P      +H LE+K  HF+++ + N CVIRAI+SA
Sbjct: 962  MAAAAILRAKIIVIAPEGPQVSEFTPHGELLQVHYLEMKANHFQLIELKNSCVIRAIASA 1021

Query: 5456 LNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVFQALLELFSIKALIFENGKEVLYNRE 5277
            +NR   E++ V+EE+ D      L  G GV+L   +    LF I AL+   G E   N  
Sbjct: 1022 MNRECHEVLKVLEESGDLEEGSLLLSGLGVELAELEHFFSLFGIAALVEAGGTEHRLNET 1081

Query: 5276 GRFGASFEINGDHIEHTLRKKSACGRLFEECGQKVGVKAESLELL--NKAGTNIRYQSTL 5103
            G   A F++   HIEH  +  S    L    G+ +G+   +  LL   + G+ ++Y+   
Sbjct: 1082 GPVPAYFKLENAHIEHIRKNCSVKSELLR--GENLGLNITNRSLLYAEQCGSYLKYKPNE 1139

Query: 5102 ARARRLADSLCAGATGVVSSSLFNKRPNLAGKFRVNTEVLGRDVLAVIGTFGSGKSTILK 4923
            +RA+ LAD   AG TG+++S LFN   NL  +   N E     VL V GTFG GKST  +
Sbjct: 1140 SRAKVLADCFLAGRTGILNSKLFNNSGNLFDEINHNGE-HEESVLGVFGTFGCGKSTAFR 1198

Query: 4922 NFFKINLGRKVLYVSPRKALLEEFYINVCGVARXXXXXXXXXXXQENWDFMTFESFILSC 4743
             FF +N G+ V YVSPRKAL EEF                    ++NW   TFE F+   
Sbjct: 1199 QFFHLNPGKGVFYVSPRKALAEEFRSKTLS----RQVGRLDKIKEKNWLLCTFEVFLKKH 1254

Query: 4742 STLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHIVVAGDPAQSDYDSEKDRVWLHGIEP 4563
              +  GMAVI+DE+QLYPPGYLD+   L   GV  +V GDP QSDYD+E DR WL  +E 
Sbjct: 1255 HLVKPGMAVIIDELQLYPPGYLDLTMLLCPKGVLFLVGGDPCQSDYDNEMDRPWLGSMES 1314

Query: 4562 DHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCTFNIPKTSDADEDFEVRGGIEIIHKIEAK 4383
            D  +LL GQ YKY  LS+R  N  F  RL C F   + ++ +E   +  G++ + +IE +
Sbjct: 1315 DCERLLKGQKYKYNGLSRRFVNKNFSSRLHCQFTEDRLTE-EEPHLLYTGLDEMVQIEDE 1373

Query: 4382 WKECYLVSSFEEKRLVEYYQDEKGKREEKVLTFGESTGLTFNYGCILITQSSEKTNEQRW 4203
            +KE +LVSSFEEK++V  + D K    E +LTFGESTGL F  G I+IT  S  T+E+RW
Sbjct: 1374 YKEVFLVSSFEEKKIVSAHFDVK---SEAILTFGESTGLNFKRGVIIITNVSALTSEKRW 1430

Query: 4202 VTALSRFRKSICFINATGMSLHELLLVYRDRALGRFL 4092
            VTALSRF  ++C +N  G+    L  VY +R L  FL
Sbjct: 1431 VTALSRFSTNVCLVNLVGVDWSTLAKVYVERTLANFL 1467



 Score =  703 bits (1815), Expect = 0.0
 Identities = 345/479 (72%), Positives = 395/479 (82%)
 Frame = -1

Query: 4044 GDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEARE 3865
            GDPWL+ MIDL QIED         E+ + EWFKTHLP+EELESVRARWVHK+LAKE RE
Sbjct: 1507 GDPWLEGMIDLFQIEDVEEVEEQFEEL-QXEWFKTHLPREELESVRARWVHKLLAKEFRE 1565

Query: 3864 VRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPLV 3685
            VRMG + SEQF DE+ K+ G  LTN AERFE IYPRHR++D+VTF+MAV+KRLRFS+P  
Sbjct: 1566 VRMGYLTSEQFTDEYPKDAGVNLTNQAERFETIYPRHRANDSVTFLMAVKKRLRFSRPAK 1625

Query: 3684 EVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIRS 3505
            E  KL  A  YG  +L +FL  VPLK   DPI+MAQAK EFE KK SKSAA IENHS RS
Sbjct: 1626 EKCKLIEASSYGRFMLNEFLDKVPLKRKHDPIMMAQAKKEFEDKKTSKSAATIENHSGRS 1685

Query: 3504 TRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRESL 3325
             RDWLIDIG +FSKSQ+CTKF+ RF  AKAAQSIVCFQH VL RFAPYMRYIE KL E L
Sbjct: 1686 CRDWLIDIGLVFSKSQLCTKFDSRFRVAKAAQSIVCFQHEVLCRFAPYMRYIEKKLHEVL 1745

Query: 3324 PDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQS 3145
            P+R+YIHSGKGL+EL+ WV+   F G+CTESDYEAFDASQDQY+VAFE+ +M YLGLP  
Sbjct: 1746 PERYYIHSGKGLDELNDWVKKGRFSGICTESDYEAFDASQDQYMVAFEVEVMRYLGLPND 1805

Query: 3144 LIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGDD 2965
            LI DY++IKTHLGSKLG+FAIMRFSGEASTFLFNTMANMLFTF++Y I   + ICFAGDD
Sbjct: 1806 LIEDYKFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLKYEIKGHEFICFAGDD 1865

Query: 2964 MCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAKE 2785
            MCAS +L L K++ESFL KLKLKAKV    KPTFCGWNL PDGIYKKPQLV+ERMCIAKE
Sbjct: 1866 MCASERLALKKQHESFLGKLKLKAKVFMVDKPTFCGWNLCPDGIYKKPQLVMERMCIAKE 1925

Query: 2784 TNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVY 2608
              NL NCIDNYAIEVS+AYK+GE+A+NRMDEEE AA+YNCVRII+KN+HLL+S++  +Y
Sbjct: 1926 KANLANCIDNYAIEVSFAYKLGERALNRMDEEEAAAFYNCVRIIIKNKHLLKSDIRTLY 1984


>gb|AJR19303.1| viral replicase [Hop latent virus]
          Length = 1981

 Score = 1012 bits (2616), Expect = 0.0
 Identities = 600/1556 (38%), Positives = 832/1556 (53%), Gaps = 16/1556 (1%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            MALTYR+P+ D++ +F+P + S+IA +AAE YK LE EN   FNY +     + L  AGI
Sbjct: 1    MALTYRTPMEDIVISFEPQVQSLIANSAAELYKNLENENCKYFNYYLPAVAKKKLSAAGI 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSP+S V HSHP CKTLENY+LY VLP YLD  ++FVGIK+ K+N LK+R+K    V C
Sbjct: 61   YLSPYSAVVHSHPVCKTLENYMLYSVLPNYLDGKYFFVGIKNKKINLLKSRNKKLESVIC 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            INR VTS D+LRY +DFV   S  H  L RH   L  P L+ ++  L  R    LFLHDE
Sbjct: 121  INRLVTSADRLRYSNDFVTFESVSHEDLRRHGPGLSEPALQGIIEPLKRRKATHLFLHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            LHYW  D+LC FL+VV+P+ +L TIVYPPELL    +SLN WCYTYEVKG+ L F+PDGV
Sbjct: 181  LHYWGSDDLCNFLQVVRPETLLATIVYPPELLFKQNRSLNEWCYTYEVKGQNLFFFPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
            R+EGYEQPLNGG+LL C K+ L DG++YMVD+L SKFAHHL+++TRG A     RS+GPF
Sbjct: 241  RSEGYEQPLNGGYLLGCNKVVLKDGSVYMVDVLCSKFAHHLVAITRGAAVTSMHRSFGPF 300

Query: 7772 EATACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 7593
            EA + + L  L  D    FP+ Y+VV+K+YRYL+TL+KPD QS++AKL+Q++  P+G EI
Sbjct: 301  EACSSDSLAKLCPDYPVCFPVPYDVVNKIYRYLRTLKKPDVQSAIAKLSQIVSEPSGREI 360

Query: 7592 VFEQEFSKLVISTNSIKTMISADRLKIFMGKYLSRLPKVIAERFDTVKEISLHEFIKNLE 7413
             F ++FSKLVI   S    I  +RL+ F+G +L RLP  +A + + V+ + L EFIK+L+
Sbjct: 361  DFIEDFSKLVIKNESFNITIVPERLRQFVGTWLGRLPNALASKLERVQSLCLSEFIKSLK 420

Query: 7412 PFTVDVVLKEIKWNNVWT---LELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGY 7242
            P    + L+ +K+N++W    L + ++G+ D  ++ I   D KF +G++  +P R ++ Y
Sbjct: 421  PHNFTIKLEALKYNHLWNDVRLWVSEEGLEDYEIEGI---DAKFTMGSH--VPPRVASPY 475

Query: 7241 YMTREKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFFRMICARPFL 7062
                        PL+ VD+++L   L  +  +          S  E+ +F   +  R  L
Sbjct: 476  QGLAHFCNRAWKPLLLVDKKMLSSVLKRLAVQRFRGEHRRRISTAELESFVGSLLERANL 535

Query: 7061 RPAKWKVYDL-----------YGP-NGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNK 6918
               + +   L           YG    A    A +  RW R +   ++ +G  WF   N+
Sbjct: 536  IQKQNRKGSLRESMAAHHYLNYGSIRDAARAIASLCMRWVRAL---FSELGPRWFFSFNR 592

Query: 6917 AYQKYLTVHPNGGTTYSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRCGGRKVPECTQAE 6738
            +   +L    +      +  Q+W    +EV      L      SW              +
Sbjct: 593  SNLMWLPAPSDAILLSREAEQSW----AEVVRSVRTLLGKSGHSW-------------GQ 635

Query: 6737 ETNVPPPEEKEANTESVNEPHFSSEPPPMYEYKEETSATREVKCSCGLIITIEKDPSASL 6558
             T   P EE    T++      S +P        E      + CSCG+ + I    S + 
Sbjct: 636  PTRTAPAEELPRATDT-----SSMQPVAASVGLAELPRAGALSCSCGVAMDI-SSISVAE 689

Query: 6557 HKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTLLGIPEEYNCCLVQR 6378
            H F   D LK R AG+YS     Y YNGG+HQS  W   L  W     +  +YN CL Q 
Sbjct: 690  HPFVARDSLKGRKAGWYSMGDVPYTYNGGSHQSQGWDSLLQMWCEANAVDPKYNSCLYQI 749

Query: 6377 YDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDGVNFALNSGEYFEMP 6198
            Y  G  +G H+DDE  F +G  + T+N+ G A F + CK  + S      L   + FEMP
Sbjct: 750  YTEGAALGYHADDEDLFEQGESILTLNLSGAAEFGVKCKNGKGS----VHLWGPQQFEMP 805

Query: 6197 RGFQETHKHGVGSTSKGRLSVTFRIMRDERETPETHSGTNGNHDAEPEGGANSPKNETHF 6018
             GFQ THKH V   SK R SVTFR +R  R T            + P   A  P  E   
Sbjct: 806  AGFQVTHKHSVWGCSKQRESVTFRCLRKSRATAR----------SVPASAAPEPLYEHAV 855

Query: 6017 ENDEEQSNSDEANQDATSESDCGHSEEPQEQSGDQRKNRGAEASTEGFTRNFNGCKVSVC 5838
            E  +  +   E N D  +                                      VSVC
Sbjct: 856  EAQQVLAEKPERNADVVA-------------------------------YKLGSVDVSVC 884

Query: 5837 TGIL-SHTYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRHDLGSAGANLEALKCAGE 5661
              +  + +Y  +D  G G+CFW  +   +G      K+  + +   + G + E  K A +
Sbjct: 885  EALWETVSYAALDVPGDGSCFWHSVGLLLGLNSLELKRRCVGYRFHAEGLDAELDKAAQD 944

Query: 5660 GVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRSDRVLHLELKDEHFRIMRIVNGC 5481
            G YA D  +A       + IR++  D      F     D+V+ L+L+ EH+  M I N C
Sbjct: 945  GAYADDTCVAATVAVINVQIRIWNKDVDKLFTFSTADVDKVIDLQLEGEHYMPMLIRNNC 1004

Query: 5480 VIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVFQALLELFSIKALIFENG 5301
            V+RAI+  LNR ECE+ HV+E  C   ++EDL KG G++    + +   F + AL+   G
Sbjct: 1005 VVRAIADGLNRLECEVQHVLERKCAPVLLEDLRKGRGLEPMNLELVFSCFGVCALVDVGG 1064

Query: 5300 KEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKVGVKAESLELLNKAGTNI 5121
            + V+YN  G     F ++ +H+ +  RKK     L           A  +E L   GT I
Sbjct: 1065 RTVVYNEAGGTHMQFTLHNEHLSYNPRKKKPSLDLVAGAKHGKLFAASVIESLQAMGTMI 1124

Query: 5120 RYQSTLARARRLADSLCAGATGVVSSSLFNKRPNLAGKFRVNTEVLGRDVLAVIGTFGSG 4941
              +  +  A  LADS    +TGV+ SSLFN + NL   F  N     + +  ++GTFGSG
Sbjct: 1125 ARKPDITSAGLLADSFFEASTGVLRSSLFNDQSNLRKAFIKNAGEESKPICTILGTFGSG 1184

Query: 4940 KSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVARXXXXXXXXXXXQENWDFMTFE 4761
            KS I K       GR   YVSPR+AL +EF  +V  V +           QENW   TFE
Sbjct: 1185 KSYIFKKLLSGGAGRAFDYVSPRRALADEFKRSVGLVKK----KGSQKVGQENWKVSTFE 1240

Query: 4760 SFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHIVVAGDPAQSDYDSEKDRVW 4581
            +F+   S L  G  V+LDE+QLYPPGY+D++  L++  VH+ + GDP QSDYD+EKDR  
Sbjct: 1241 TFLDRASHLLEGQVVVLDEVQLYPPGYIDLILCLLHVPVHLFLIGDPVQSDYDNEKDRAV 1300

Query: 4580 LHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCTFNIPKTSDADEDFEVRGGIEII 4401
            L  +    + LL  + YKY   SKR  N  FIGRLPCT  +      +E   +R  I+ +
Sbjct: 1301 LSCLAECCTALLRDETYKYNMRSKRFCNRNFIGRLPCTI-LESDCTTEEPHVLRAHIDNL 1359

Query: 4400 HKIEAKWKECYLVSSFEEKRLVEYYQDEKGKREEKVLTFGESTGLTFNYGCILITQSSEK 4221
              +E  + E  LVSSF+EK + + YQ      + +VLTFGESTGLTF+YG ILIT  +E+
Sbjct: 1360 ADLEPAYTEVILVSSFDEKIVAQSYQS-----KARVLTFGESTGLTFDYGTILITSVAER 1414

Query: 4220 TNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRALGRFLGKRADVEDLRKFL 4053
             NE+RWVTALSRFR ++CF+N T MS  +L + Y+ R L +FL + A  EDL++ L
Sbjct: 1415 VNEKRWVTALSRFRMNLCFVNCTSMSYEQLAVRYKGRFLCKFLCRGARTEDLQQLL 1470



 Score =  685 bits (1768), Expect = 0.0
 Identities = 338/481 (70%), Positives = 393/481 (81%), Gaps = 1/481 (0%)
 Frame = -1

Query: 4047 AGDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEAR 3868
            AGDPWLKTM++LLQ  D          +  EEWF+THLP+EELE VR+RWVHKILAKEAR
Sbjct: 1496 AGDPWLKTMVNLLQAPDMQEEEITEMALP-EEWFRTHLPREELEGVRSRWVHKILAKEAR 1554

Query: 3867 EVRMGDIVSEQFADEHSKE-KGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKP 3691
            EVR+GDIVSEQF D+HSK+  G+QLTNAAERFE IYPRHR++DTVTF+MAVRKRL FS P
Sbjct: 1555 EVRLGDIVSEQFTDDHSKQIGGRQLTNAAERFETIYPRHRANDTVTFIMAVRKRLSFSNP 1614

Query: 3690 LVEVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSI 3511
              E  KL  A  YG  LL  F KHVPL+P  +   M  A   FE KK+SKSAA IENHS 
Sbjct: 1615 ARERAKLHDACAYGRALLDVFRKHVPLRPEHNHKFMEAALWNFEEKKLSKSAATIENHSG 1674

Query: 3510 RSTRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRE 3331
            RS RDW ID+ QIFSKSQ+CTKF+ RF  AKAAQSIVCFQH+VL RFAP+MRYIE+K+ E
Sbjct: 1675 RSCRDWPIDMAQIFSKSQLCTKFDNRFRLAKAAQSIVCFQHAVLCRFAPFMRYIEMKVHE 1734

Query: 3330 SLPDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLP 3151
             LP RFYIHSGKGL+EL+ WV+   FDGVCTESDYEAFDASQD++I+AFEL LM +L LP
Sbjct: 1735 VLPARFYIHSGKGLDELNSWVKGGKFDGVCTESDYEAFDASQDEFIMAFELELMKFLRLP 1794

Query: 3150 QSLIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAG 2971
              +I DY++IKT LGSKLG+FAIMRFSGEASTFLFNT+ANMLFTFM+Y I   + ICFAG
Sbjct: 1795 HDMIEDYKFIKTSLGSKLGNFAIMRFSGEASTFLFNTLANMLFTFMKYEIKGDEYICFAG 1854

Query: 2970 DDMCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIA 2791
            DDMCASR+L +  +Y+ FL KLKLKAKVQ T KPTFCGW+L PDGIYKKPQLV ERMCIA
Sbjct: 1855 DDMCASRELKVVGKYKKFLDKLKLKAKVQMTQKPTFCGWHLCPDGIYKKPQLVFERMCIA 1914

Query: 2790 KETNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEV 2611
             E NNL NCIDNYAIEV++AY++GE+AVNRMDEEE+ A+YNCVR+IV+N+HLL+S+V  V
Sbjct: 1915 LELNNLANCIDNYAIEVAFAYRLGERAVNRMDEEEVGAFYNCVRLIVRNKHLLKSDVRAV 1974

Query: 2610 Y 2608
            +
Sbjct: 1975 F 1975


>ref|NP_066258.1| polyprotein [Hop latent virus]
 dbj|BAB13712.1| 224 kDa protein [Hop latent virus]
          Length = 1981

 Score =  994 bits (2571), Expect(2) = 0.0
 Identities = 592/1556 (38%), Positives = 834/1556 (53%), Gaps = 16/1556 (1%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            MALTYR+P+ D++ +F+P + S+IA +AAE YK LE+EN   FNY +     + L  AGI
Sbjct: 1    MALTYRTPMEDIVISFEPQVQSLIANSAAELYKNLEKENCKYFNYYLPAVAKKKLSAAGI 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSP+S V HSHP CKTLENY+LY VLP YLD  ++FVGIK+ K+N LK+R+K    V C
Sbjct: 61   YLSPYSAVVHSHPVCKTLENYMLYSVLPNYLDGKYFFVGIKNKKINLLKSRNKKLESVIC 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            INR VTS D+LRY +DFV   S  H  L RH   L  P L+ ++  L  R    LFLHDE
Sbjct: 121  INRLVTSADRLRYSNDFVTFESVSHEDLRRHGPGLSEPALQGIIEPLKRRKATHLFLHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            LHYW  D+LC FL+VV+P+ +L TIVYPPELL    +SLN WCYTYEV+G+ L F+PDGV
Sbjct: 181  LHYWGSDDLCNFLQVVRPETLLATIVYPPELLFRQNRSLNEWCYTYEVRGQNLFFFPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
            R+EGYEQPLNGG+LL C K+ L DG++YMVD+L SKFAHHL+++TRG A     RS+GPF
Sbjct: 241  RSEGYEQPLNGGYLLGCNKVVLKDGSVYMVDVLCSKFAHHLVAITRGAAVTSMHRSFGPF 300

Query: 7772 EATACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 7593
            EA + + L  L  D    FP+ ++VV+K+YRYL+TL+KPD QS++AKL+Q++  P+G EI
Sbjct: 301  EACSSDSLAKLCPDYPVCFPVPHDVVNKIYRYLRTLKKPDVQSAIAKLSQIVSEPSGREI 360

Query: 7592 VFEQEFSKLVISTNSIKTMISADRLKIFMGKYLSRLPKVIAERFDTVKEISLHEFIKNLE 7413
             F ++FSKLVI   S    I  +RL+ F+G +L RLP  +A + + V+ + L EFIK+L+
Sbjct: 361  DFIEDFSKLVIKNESFNITIVPERLRQFVGTWLGRLPSALASKLEQVQSLCLSEFIKSLK 420

Query: 7412 PFTVDVVLKEIKWNNVWT---LELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGY 7242
            P    + L+ +K+N++W    L + ++G+ D  ++ I   D KF  G++  +P R ++ Y
Sbjct: 421  PHNFTIKLEALKYNHLWNDVRLWVSEEGLEDYSIEGI---DAKFTTGSH--VPPRVASPY 475

Query: 7241 YMTREKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFFRMICARPFL 7062
                        PL+ VD+++L   L  +  +          S  E+ +F   +  R  L
Sbjct: 476  QGLAHFCDRAWKPLLLVDKKMLSSVLKRLAVQRFRGEHRRRISTAELESFVDSLLERAKL 535

Query: 7061 ------------RPAKWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNK 6918
                        R A     +      A    A +  RW R +   ++ +G  WF   N+
Sbjct: 536  IQKQNRKGSFRERIAAHHYLNYDTIRDAARAIASLCMRWVRAL---FSELGPRWFLRFNR 592

Query: 6917 AYQKYLTVHPNGGTTYSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRCGGRKVPECTQAE 6738
            +   +L    +      +  QNW  V   +     +L K+ ++SW              +
Sbjct: 593  SNLMWLPAPSDAILLSREAEQNWAEVVRSI---CTQLGKS-SYSW-------------GQ 635

Query: 6737 ETNVPPPEEKEANTESVNEPHFSSEPPPMYEYKEETSATREVKCSCGLIITIEKDPSASL 6558
             T   P EE    T++         P        E S    + CSCG+ + I    S + 
Sbjct: 636  LTRTTPAEELPRATDT-----SGMLPVAASVGLAELSRAGTLGCSCGVAMDI-SSISVAE 689

Query: 6557 HKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTLLGIPEEYNCCLVQR 6378
            H F   D LK R AG+YS     Y YNGG+H+S  W   L  W     +  +Y+ CL Q 
Sbjct: 690  HPFVARDFLKGRKAGWYSMGDVPYTYNGGSHKSQGWDSLLQMWCEANAVDPKYDSCLYQI 749

Query: 6377 YDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDGVNFALNSGEYFEMP 6198
            Y  G  +G H+DDE  F +G  + T+N+ G A F + CK  + S      L   + FEMP
Sbjct: 750  YTEGAALGYHADDEDLFEQGESILTLNLSGAAEFGVKCKNGKGS----VHLRGPQQFEMP 805

Query: 6197 RGFQETHKHGVGSTSKGRLSVTFRIMRDERETPETHSGTNGNHDAEPEGGANSPKNETHF 6018
             GFQ THKH V   S+ R SVTFR +R  R   ++                         
Sbjct: 806  AGFQVTHKHSVWGCSRQRESVTFRCLRKSRAIAQS------------------------- 840

Query: 6017 ENDEEQSNSDEANQDATSESDCGHSEEPQEQSGDQRKNRGAEASTEGFTRNFNGCKVSVC 5838
                           A  E    H+ E Q+   ++     AE + +          V+VC
Sbjct: 841  -----------VPASAAPELLYEHAVEAQQVLVEK-----AERNADVVAYKLGSVDVNVC 884

Query: 5837 TGIL-SHTYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRHDLGSAGANLEALKCAGE 5661
              +  + +Y  +D  G G+CFW  +   +G      K+  + +   + G + E  K A +
Sbjct: 885  EALWETVSYAALDVPGDGSCFWHSVGLLLGLNSLELKRRCVGYRFHAEGLDAELDKAAQD 944

Query: 5660 GVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRSDRVLHLELKDEHFRIMRIVNGC 5481
            G YA D  +A       + IR++  D      F     D+V+ L+L+ EH+  M I N C
Sbjct: 945  GAYADDTCVAATVAVINVQIRIWNKDVDKLFTFSKADVDKVIDLQLEGEHYMPMLIRNNC 1004

Query: 5480 VIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVFQALLELFSIKALIFENG 5301
            V+RAI+  LNR ECE+ HV+E  C   ++EDL KG G++    + +   F + AL+   G
Sbjct: 1005 VVRAIADGLNRLECEVQHVLERKCAPVLLEDLRKGRGLEPMNLELVFSCFGVCALVDVGG 1064

Query: 5300 KEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKVGVKAESLELLNKAGTNI 5121
            + V+YN  G     F +  +H+ +  RKK     L           A  +E L   GT I
Sbjct: 1065 RTVVYNEGGGTHMQFTLYNEHLSYNPRKKKPSLDLVAGAKHGKLFAASVIESLQAMGTMI 1124

Query: 5120 RYQSTLARARRLADSLCAGATGVVSSSLFNKRPNLAGKFRVNTEVLGRDVLAVIGTFGSG 4941
              +  +  A  LADS    +TGV+ SSLFN + NL   F  N     + +  ++GTFGSG
Sbjct: 1125 ARKPDITSAGLLADSFFEASTGVLRSSLFNDQSNLRKAFIENAGEESKPICTILGTFGSG 1184

Query: 4940 KSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVARXXXXXXXXXXXQENWDFMTFE 4761
            KS I K       GR   YVSPR+AL +EF  +V  V +           QENW   TFE
Sbjct: 1185 KSYIFKKLLSGGAGRAFDYVSPRRALADEFKRSVGLVKK----KGSQKVGQENWKVSTFE 1240

Query: 4760 SFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHIVVAGDPAQSDYDSEKDRVW 4581
            +F+   S L  G  V+LDE+QLYPPGY+D++  L++  VH+ + GDP QSDYD+EKDR  
Sbjct: 1241 TFLDRASHLLEGQVVVLDEVQLYPPGYIDLILCLLHVPVHLFLIGDPVQSDYDNEKDRAV 1300

Query: 4580 LHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCTFNIPKTSDADEDFEVRGGIEII 4401
            L  +    + LL  + YKY   SKR  N  FIGRLPCT  +      +E   +R  I+ +
Sbjct: 1301 LSCLAECCTALLRDETYKYNMRSKRFCNRNFIGRLPCTI-LESDCTTEEPHVLRAHIDNL 1359

Query: 4400 HKIEAKWKECYLVSSFEEKRLVEYYQDEKGKREEKVLTFGESTGLTFNYGCILITQSSEK 4221
              +E  + E  LVSSF+EK + + YQ      + +VLTFGESTGLTF+YG ILIT  +E+
Sbjct: 1360 ADLEPAYTEVILVSSFDEKVVAQSYQS-----KARVLTFGESTGLTFDYGTILITSVAER 1414

Query: 4220 TNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRALGRFLGKRADVEDLRKFL 4053
             NE+RWVTALSRFR ++CF+N T MS  +L + Y+ R L +FL + A  EDL++ L
Sbjct: 1415 VNEKRWVTALSRFRMNLCFVNCTSMSYEQLAVRYKGRFLCKFLCRGARTEDLQQLL 1470



 Score =  685 bits (1767), Expect(2) = 0.0
 Identities = 338/481 (70%), Positives = 393/481 (81%), Gaps = 1/481 (0%)
 Frame = -1

Query: 4047 AGDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEAR 3868
            AGDPWLKTM++LLQ  D          +  EEWF+THLP+EELE VR+RWVHKILAKEAR
Sbjct: 1496 AGDPWLKTMVNLLQAPDMQEEEIAEMALP-EEWFRTHLPREELEGVRSRWVHKILAKEAR 1554

Query: 3867 EVRMGDIVSEQFADEHSKE-KGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKP 3691
            EVR+GDIVSEQF D+HSK+  G+QLTNAAERFE IYPRHR++DTVTF+MAVRKRL FS P
Sbjct: 1555 EVRLGDIVSEQFTDDHSKQIGGRQLTNAAERFETIYPRHRANDTVTFIMAVRKRLSFSNP 1614

Query: 3690 LVEVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSI 3511
              E  KL  A  YG  LL  F KHVPL+P  +   M  A   FE KK+SKSAA IENHS 
Sbjct: 1615 ARERAKLHDACVYGRALLDVFRKHVPLRPEHNHKFMEAALWNFEEKKLSKSAATIENHSG 1674

Query: 3510 RSTRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRE 3331
            RS RDW ID+ QIFSKSQ+CTKF+ RF  AKAAQSIVCFQH+VL RFAP+MRYIE+K+ E
Sbjct: 1675 RSCRDWPIDMAQIFSKSQLCTKFDNRFRLAKAAQSIVCFQHAVLCRFAPFMRYIEMKVHE 1734

Query: 3330 SLPDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLP 3151
             LP RFYIHSGKGL+EL+ WV+   FDGVCTESDYEAFDASQD++I+AFEL LM +L LP
Sbjct: 1735 VLPARFYIHSGKGLDELNSWVKGGKFDGVCTESDYEAFDASQDEFIMAFELELMKFLRLP 1794

Query: 3150 QSLIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAG 2971
              +I DY++IKT LGSKLG+FAIMRFSGEASTFLFNT+ANMLFTFM+Y I   + ICFAG
Sbjct: 1795 HDMIEDYKFIKTSLGSKLGNFAIMRFSGEASTFLFNTLANMLFTFMKYEIKGDEYICFAG 1854

Query: 2970 DDMCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIA 2791
            DDMCASR+L +  +Y+ FL KLKLKAKVQ T KPTFCGW+L PDGIYKKPQLV ERMCIA
Sbjct: 1855 DDMCASRELKVVGKYKKFLDKLKLKAKVQMTQKPTFCGWHLCPDGIYKKPQLVFERMCIA 1914

Query: 2790 KETNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEV 2611
             E NNL NCIDNYAIEV++AY++GE+AVNRMDEEE+ A+YNCVR+IV+N+HLL+S+V  V
Sbjct: 1915 LELNNLANCIDNYAIEVAFAYRLGERAVNRMDEEEVGAFYNCVRLIVRNKHLLKSDVRAV 1974

Query: 2610 Y 2608
            +
Sbjct: 1975 F 1975


>emb|CDK36471.1| polyprotein [Hop latent virus]
          Length = 1981

 Score =  994 bits (2569), Expect(2) = 0.0
 Identities = 593/1556 (38%), Positives = 830/1556 (53%), Gaps = 16/1556 (1%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            MALTYR+P+ D++ +F+P + S+IA +AAE YK LE EN   FNY +     + L  AG+
Sbjct: 1    MALTYRTPMEDIVISFEPQVQSLIANSAAELYKNLENENCKYFNYYLPAVAKKKLSAAGM 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSP+S V HSHP CKTLENY+LY VLP YLD  ++FVGIK+ K+N LK+R+K    V C
Sbjct: 61   YLSPYSAVVHSHPVCKTLENYMLYSVLPNYLDGKYFFVGIKNKKINLLKSRNKKLESVIC 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            INR VTS D+LRY +DFV   S  H  L RH   L  P L+ ++  L  R    LFLHDE
Sbjct: 121  INRLVTSADRLRYSNDFVTFESVSHEDLRRHGPGLSEPALQGIIEPLKRRKATHLFLHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            LHYW  D+LC FL+VV+P+ +L TIVYPPELL    +SLN WCYTYEV+G+ L F+PDGV
Sbjct: 181  LHYWGSDDLCNFLQVVRPETLLATIVYPPELLFKQNRSLNEWCYTYEVRGQNLFFFPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
            R+EGYEQPLNGG+LL C K+ L DG++YMVD+L SKFAHHL+++TRG A     RS+GPF
Sbjct: 241  RSEGYEQPLNGGYLLGCNKVVLKDGSVYMVDVLCSKFAHHLVAITRGAAVTSMHRSFGPF 300

Query: 7772 EATACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 7593
            EA + + L  L  D    FP+ ++VV+K+YRYL+TL+KPD QS +AKL+Q++  P+G EI
Sbjct: 301  EACSSDSLAKLCPDYPVCFPVPHDVVNKIYRYLRTLKKPDVQSEIAKLSQIVSEPSGREI 360

Query: 7592 VFEQEFSKLVISTNSIKTMISADRLKIFMGKYLSRLPKVIAERFDTVKEISLHEFIKNLE 7413
             F ++FSKLVI   S    I  +RL+ F+G +L RLP  +A + + V+ + L EFIK+L+
Sbjct: 361  DFIEDFSKLVIKNESFNITIVPERLRQFVGTWLGRLPSALASKLEQVQSLCLSEFIKSLK 420

Query: 7412 PFTVDVVLKEIKWNNVWT---LELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGY 7242
            P    + L+ +K+N++W    L + ++G+ D  ++ I   D KF +G++  +P R  A Y
Sbjct: 421  PHNFTIKLEALKYNHLWNDVRLWVSEEGLEDYAIEGI---DAKFTMGSH--VPPRVVAPY 475

Query: 7241 YMTREKLRALGGPLIEVDREVLKVTLASICYKSLSNSDGTLASINEIAAFFRMICARPFL 7062
                        PL+ VD++ L   L  +  +          S  E+ +F   +  R  L
Sbjct: 476  QGLAHFCDRAWKPLLLVDKKKLSSVLKRLAVQRFRGEHRRRISTAELESFVDSLLERAKL 535

Query: 7061 RPAKWKVYDL-----------YGP-NGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNK 6918
               + +   L           YG    A    A +  RW R +   ++ +G  WF   N+
Sbjct: 536  IQRQNRKGSLRESMAAHHYLNYGSIRDAARAIASLCMRWVRAL---FSELGPRWFSRFNR 592

Query: 6917 AYQKYLTVHPNGGTTYSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRCGGRKVPECTQAE 6738
            +   +L    +      +  Q+W    +EV      L    + SW              +
Sbjct: 593  SNLMWLPAPSDAILLSREAEQSW----AEVVRSICTLLGKSSHSW-------------GQ 635

Query: 6737 ETNVPPPEEKEANTESVNEPHFSSEPPPMYEYKEETSATREVKCSCGLIITIEKDPSASL 6558
             T   P EE    T++      ++   P      E S    + CSCG+ I I    S + 
Sbjct: 636  PTRTAPAEELPRATDTSGMLPVAASVGP-----AELSRAGALSCSCGVAIDI-SSISVAE 689

Query: 6557 HKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTLLGIPEEYNCCLVQR 6378
            H F   D LK R AG+YS     Y YNGG+HQS  W   L  W     +  +YN CL Q 
Sbjct: 690  HPFVARDSLKGRKAGWYSMGDVPYTYNGGSHQSQGWDSLLQMWCEANAVDPKYNSCLYQI 749

Query: 6377 YDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDGVNFALNSGEYFEMP 6198
            Y  G  +G H+DDE  F +G  + T+N+ G A F + CK  + S  +   L     FEMP
Sbjct: 750  YTEGAALGYHADDEDLFEQGESILTLNLSGAAEFGVKCKNGKGSVHIWGPLQ----FEMP 805

Query: 6197 RGFQETHKHGVGSTSKGRLSVTFRIMRDERETPETHSGTNGNHDAEPEGGANSPKNETHF 6018
             GFQ THKH V   SK R SVTFR +   R   ++                         
Sbjct: 806  AGFQVTHKHSVWGCSKQRESVTFRCLPKPRAIAQS------------------------- 840

Query: 6017 ENDEEQSNSDEANQDATSESDCGHSEEPQEQSGDQRKNRGAEASTEGFTRNFNGCKVSVC 5838
                           A  ES   H+ E Q+   ++      E + +          VSVC
Sbjct: 841  -----------VPASAAPESLYEHAVEAQQVLVEK-----PERNADVVAYKLGSVDVSVC 884

Query: 5837 TGIL-SHTYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRHDLGSAGANLEALKCAGE 5661
              +  + +Y  +D  G G+CFW  +   +G      K+  + +   + G + E  K A +
Sbjct: 885  EALWETVSYAALDVPGDGSCFWHSVGLLLGLNSLELKRRCVGYRFHAEGLDAELDKAAQD 944

Query: 5660 GVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRSDRVLHLELKDEHFRIMRIVNGC 5481
            G YA D  +A       + IR++  +      F     D+V+ L+L+ EH+  M I N C
Sbjct: 945  GAYADDTCVAATVAVINVQIRIWNKEVDELFTFSTADVDKVIDLQLEGEHYMPMLIRNNC 1004

Query: 5480 VIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVFQALLELFSIKALIFENG 5301
            V+RAI+  LNR ECE+ HV+E  C   ++EDL KG G++    + +   F + AL+   G
Sbjct: 1005 VVRAIADGLNRLECEVQHVLERKCAPVLLEDLRKGRGLEPMNLELVFSCFGVCALVDVGG 1064

Query: 5300 KEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKVGVKAESLELLNKAGTNI 5121
            + V+YN  G     F ++ +H+ +  RKK     L           A  +E L   GT I
Sbjct: 1065 RTVVYNEAGGTHMQFTLHDEHLSYNPRKKKPSLDLVAGAKHGKLFAASVIESLQAMGTMI 1124

Query: 5120 RYQSTLARARRLADSLCAGATGVVSSSLFNKRPNLAGKFRVNTEVLGRDVLAVIGTFGSG 4941
              +  +  A  LADS    +TGV+ SSLFN + NL   F  N     + +  ++GTFGSG
Sbjct: 1125 ARKPDITSAGLLADSFFEASTGVLRSSLFNDQSNLRKAFIKNAGEESKPICTILGTFGSG 1184

Query: 4940 KSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVARXXXXXXXXXXXQENWDFMTFE 4761
            KS I K       GR   YVSPR+AL +EF  +V  V +           QENW   TFE
Sbjct: 1185 KSYIFKKLLSGGAGRAFDYVSPRRALADEFKRSVGLVKK----KGCQRVGQENWKVSTFE 1240

Query: 4760 SFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHIVVAGDPAQSDYDSEKDRVW 4581
            +F+   S L  G  V+LDE+QLYPPGY+D++  L++  VH+ + GDP QSDYD+EKDR  
Sbjct: 1241 TFLDKASHLLEGQVVVLDEVQLYPPGYIDLILCLLHVPVHLFLIGDPVQSDYDNEKDRAV 1300

Query: 4580 LHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCTFNIPKTSDADEDFEVRGGIEII 4401
            L  +    + LL  + YKY   SKR  N  FIGRLPCT  +      +E   +R  I+ +
Sbjct: 1301 LSCLAECCTALLRDETYKYNMRSKRFCNRNFIGRLPCTI-LESDCTTEEPHVLRAHIDNL 1359

Query: 4400 HKIEAKWKECYLVSSFEEKRLVEYYQDEKGKREEKVLTFGESTGLTFNYGCILITQSSEK 4221
              +E  + E  LVSSF+EK + + YQ      + +VLTFGESTGLTF+YG ILIT  +E+
Sbjct: 1360 ADLEPAYTEVILVSSFDEKIVAQSYQS-----KARVLTFGESTGLTFDYGTILITSVAER 1414

Query: 4220 TNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRALGRFLGKRADVEDLRKFL 4053
             NE+RWVTALSR R ++CF+N T M   +L + Y+ R L +FL + A  EDL++ L
Sbjct: 1415 VNEKRWVTALSRSRMNLCFVNCTSMGYEQLAVRYKGRFLCKFLCRGARTEDLQQLL 1470



 Score =  685 bits (1767), Expect(2) = 0.0
 Identities = 338/481 (70%), Positives = 393/481 (81%), Gaps = 1/481 (0%)
 Frame = -1

Query: 4047 AGDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEAR 3868
            AGDPWLKTM++LLQ  D          +  EEWF+THLP+EELE VR+RWVHKILAKEAR
Sbjct: 1496 AGDPWLKTMVNLLQAPDMQEEEIAEMALP-EEWFRTHLPREELEGVRSRWVHKILAKEAR 1554

Query: 3867 EVRMGDIVSEQFADEHSKE-KGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKP 3691
            EVR+GDIVSEQF D+HSK+  G+QLTNAAERFE IYPRHR++DTVTF+MAVRKRL FS P
Sbjct: 1555 EVRLGDIVSEQFTDDHSKQIGGRQLTNAAERFETIYPRHRANDTVTFIMAVRKRLSFSNP 1614

Query: 3690 LVEVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSI 3511
              E  KL  A  YG  LL  F KHVPL+P  +   M  A   FE KK+SKSAA IENHS 
Sbjct: 1615 ARERAKLHDACVYGRALLDVFRKHVPLRPEHNHKFMEAALWNFEEKKLSKSAATIENHSG 1674

Query: 3510 RSTRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRE 3331
            RS RDW ID+ QIFSKSQ+CTKF+ RF  AKAAQSIVCFQH+VL RFAP+MRYIE+K+ E
Sbjct: 1675 RSCRDWPIDMAQIFSKSQLCTKFDNRFRLAKAAQSIVCFQHAVLCRFAPFMRYIEMKVHE 1734

Query: 3330 SLPDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLP 3151
             LP RFYIHSGKGL+EL+ WV+   FDGVCTESDYEAFDASQD++I+AFEL LM +L LP
Sbjct: 1735 VLPARFYIHSGKGLDELNSWVKGGKFDGVCTESDYEAFDASQDEFIMAFELELMKFLRLP 1794

Query: 3150 QSLIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAG 2971
              +I DY++IKT LGSKLG+FAIMRFSGEASTFLFNT+ANMLFTFM+Y I   + ICFAG
Sbjct: 1795 HDMIEDYKFIKTSLGSKLGNFAIMRFSGEASTFLFNTLANMLFTFMKYEIKGDEYICFAG 1854

Query: 2970 DDMCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIA 2791
            DDMCASR+L +  +Y+ FL KLKLKAKVQ T KPTFCGW+L PDGIYKKPQLV ERMCIA
Sbjct: 1855 DDMCASRELKVVGKYKKFLDKLKLKAKVQMTQKPTFCGWHLCPDGIYKKPQLVFERMCIA 1914

Query: 2790 KETNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEV 2611
             E NNL NCIDNYAIEV++AY++GE+AVNRMDEEE+ A+YNCVR+IV+N+HLL+S+V  V
Sbjct: 1915 LELNNLANCIDNYAIEVAFAYRLGERAVNRMDEEEVGAFYNCVRLIVRNKHLLKSDVRAV 1974

Query: 2610 Y 2608
            +
Sbjct: 1975 F 1975


>ref|YP_001165301.1| replicase [Phlox virus S]
 gb|ABP37862.1| replicase [Phlox virus S]
          Length = 1990

 Score =  990 bits (2560), Expect(2) = 0.0
 Identities = 596/1566 (38%), Positives = 866/1566 (55%), Gaps = 26/1566 (1%)
 Frame = -2

Query: 8672 MALTYRSPIADVITNFDPSINSIIATTAAEHYKKLEEENFALFNYAMSPQTTQHLIGAGI 8493
            MALTYRSP+ + +  +D S+ S+IA+T+A +YK  E  NF  FNY ++P   Q LI AG+
Sbjct: 1    MALTYRSPLEENVAAYDTSVQSLIASTSASYYKDFEANNFQFFNYYLNPVAKQKLITAGL 60

Query: 8492 YLSPFSGVPHSHPACKTLENYILYIVLPQYLDNSFYFVGIKDFKLNALKARHKHTNMVQC 8313
            YLSP+S +PHSHPACKTLENY LY V+   LDN F+F+GIK+ K++ LK+R+ + +M+  
Sbjct: 61   YLSPYSAMPHSHPACKTLENYFLYTVIAPLLDNRFFFIGIKNSKIDLLKSRNSNLSMINK 120

Query: 8312 INRYVTSQDKLRYPSDFVVRHSKPHSGLSRHRMSLEGPTLRDLVPELMVRSCKKLFLHDE 8133
            +NRYVTS D++RY SDFV++       L+RH   LEG TL+DLVP+L     K +FLHDE
Sbjct: 121  LNRYVTSADRVRYGSDFVIKSIYMGEKLARHESCLEGATLKDLVPKLCEGKAKHIFLHDE 180

Query: 8132 LHYWKIDELCTFLEVVQPQVVLGTIVYPPELLKGSKKSLNNWCYTYEVKGRALRFYPDGV 7953
            LHYWK  +L TFLE+V+P V+  T+VYP E+L G+  SL+ WCY + + G  L FYPDGV
Sbjct: 181  LHYWKPRDLITFLELVKPDVMYATLVYPAEILGGASFSLHPWCYKFNIVGGKLIFYPDGV 240

Query: 7952 RAEGYEQPLNGGFLLECGKIKLCDGTIYMVDILSSKFAHHLISLTRGEAAGPSMRSYGPF 7773
            ++E YEQPL+ GFLLE  ++ +    IYMVD++ SKFAHHL++LTR +A GP+ RS+GPF
Sbjct: 241  QSESYEQPLSSGFLLEAKRV-VTKSAIYMVDVIQSKFAHHLVALTRTDAIGPTYRSFGPF 299

Query: 7772 EATACNGLDPLVRDVSCSFPISYEVVSKLYRYLKTLRKPDEQSSMAKLTQLLPCPTGEEI 7593
            +AT+   L+PL+R  +C  P+S+EV+S++YRYL+TL+KPD QS+MAKL+QLL  P G EI
Sbjct: 300  DATSSTALNPLMRGNNCFIPVSFEVLSRVYRYLRTLKKPDVQSAMAKLSQLLQEPKGIEI 359

Query: 7592 VFEQEFSKLVISTNSIKTMISADRLKIFMGKYLSRLPKVIAERFDTVKEISLHEFIKNLE 7413
             F ++F++LVI TN+I+T+I  + +K F+G++L ++P V+A RF +V E+SL EF+  +E
Sbjct: 360  KFVEDFARLVIGTNTIRTLIKPEVIKQFLGRWLGKMPHVLAVRFSSVAEVSLDEFVSQME 419

Query: 7412 PFTVDVVLKEIKWNNVWTLELKDDGMADELLDPIRMLDDKFGLGTYDAIPDRKSAGYYMT 7233
            PFT  V L ++ WN     +L      D  +D   +L++ F  G    +  R+ A Y   
Sbjct: 420  PFTFQVKLVDVDWNYHHNWDLFSKAEEDYGVDVCDLLNEGFIAGVSREVGARRRAPY--- 476

Query: 7232 REKLRALGG--PLIEVDRE-----VLKVTLASICYKSLSNSDGTLASIN----EIAAFFR 7086
             + ++  GG   L+ V         +K+ L  +   ++  +   +A  +     +A+   
Sbjct: 477  -QSIKGTGGFCDLLTVSEGFEHWFCIKICLTEVFSPTMEGAHFYVAQEHIRKKFLASMTN 535

Query: 7085 MICARPFLR---PAKWKVYDLYGPNGAIGLQAYMRSRWARNVTFYWANIGLVWFRCNNKA 6915
            M+  + FL+    ++W         GA+ ++A    R+AR     +  IG+ WF  N + 
Sbjct: 536  MLNVKGFLKQLEDSRW--------FGAVYMKAL--DRYARFREECFLQIGVKWFFSNAQH 585

Query: 6914 YQKYLTVHPNGGTTYSKLMQNWGVVCSEVSLGALKLKKTDNFSWLRCG-GRKVPECTQAE 6738
              ++LT      +     M+ +  V S+V+     L++    +    G  R++P   + E
Sbjct: 586  NVRFLTNQAETPSMPRAFMRAFSEVMSDVTKRPTLLRRRRAGTPSTQGVDREMPAPVKVE 645

Query: 6737 ETNVPPPEEKEANTESVNEPHFSSEPPPMYEYKEETSATREVKCSCGLIITIEKDPSASL 6558
            E     P EK A  E   +   + +  P+ E+  E        C CGL + +       L
Sbjct: 646  E-----PVEKNAPREVDPDESGNEKSVPVEEFSSELC---PAFCKCGLDLELRALLGTDL 697

Query: 6557 HKFQTPDRLKNRNAGFYSKSGKGYVYNGGAHQSLNWPKWLNSWMTLLGIP-EEYNCCLVQ 6381
            H F+ PD L NR  G+YS +G  Y YNGG H+S  WPKWL  WM L  I    Y+CCL Q
Sbjct: 698  HGFRAPDDLGNRKGGWYSTTGVDYKYNGGHHKSQGWPKWLTVWMQLNEIDCNYYDCCLFQ 757

Query: 6380 RYDGGGGIGLHSDDEKCFIKGTPVFTVNIEGEARFSIACKGVRHSDGVNF-ALNSGEYFE 6204
             Y+  G IG HSDDE  F  G  + T N++G+A FS  C      +G +   LN      
Sbjct: 758  VYNENGRIGYHSDDEPIFETGASILTCNLKGQADFSFRC-----DEGSSMQVLNGPMSIL 812

Query: 6203 MPRGFQETHKHGVGSTSKGRLSVTFRIMRDERETPETHSGTNGNHDAEPEGGANSPKNET 6024
            MP GFQ +HKH V + +  R SVTFR +   +   E           EPE      K   
Sbjct: 813  MPEGFQLSHKHAVCNCTAARESVTFRRLAAVKPKAE-----------EPE------KPGA 855

Query: 6023 HFENDEEQSNSDEANQDATSESDCGHSEEPQEQSGDQRKNRGAEASTEGFTRNFNGCKVS 5844
             F+  E +SN          +S  G  E+              E  TE          + 
Sbjct: 856  SFDEAEVKSN----------DSHTGEHED------------DVEVETE--------VTIK 885

Query: 5843 VCTGILSH------TYNTVDCGGGGNCFWLCLANEVGSEYTLSKKLALRHDLGSAGANLE 5682
               G + H      +Y+  D  G GNCFW CL+   G  +   K+   R   G A  +  
Sbjct: 886  TAVGTIKHSKIPPMSYSLQDVPGDGNCFWHCLSKSSGLAFKELKEACRRIKYGEAERDEA 945

Query: 5681 ALKCAGEGVYAVDEAIACAACTFKIAIRVYQPDEKITTIFEPTRS-DRVLHLELKDEHFR 5505
                    ++A +EAI  AA   +  I V  P+    + F P  S ++V ++E+ + HF+
Sbjct: 946  LSSQLKPRIFAEEEAILAAAVVLRAKIIVLSPEWPQQSEFTPIGSLEQVHYIEMANNHFQ 1005

Query: 5504 IMRIVNGCVIRAISSALNRTECEIMHVIEENCDATMVEDLWKGGGVDLGVFQALLELFSI 5325
            ++ + N CV+RA++SALNR  CE++ V+++  D      L  G GV+L   +    LF I
Sbjct: 1006 LVELKNACVVRAVASALNRRCCEVLKVLDDAGDLGEDSPLLSGQGVELAELEHYFALFGI 1065

Query: 5324 KALIFENGKEVLYNREGRFGASFEINGDHIEHTLRKKSACGRLFEECGQKVG--VKAESL 5151
             AL+  +      N +G   A+F ++  HI+H  +       L +  G+ +G  + + S 
Sbjct: 1066 AALVVTHTTSHQLNVQGAVPATFRLHDGHIDHVKKNCQVDNGLLK--GENIGLTITSRSK 1123

Query: 5150 ELLNKAGTNIRYQSTLARARRLADSLCAGATGVVSSSLFNKRPNLAGKFRVNTEVLGRDV 4971
              + + G+ + Y    ARA+ LAD L AG TGV++SSLFN   NL G   +N E    +V
Sbjct: 1124 LYVEQCGSLLPYAPDEARAKVLADCLLAGNTGVLNSSLFNNCSNLMGSVDLNVE-HENEV 1182

Query: 4970 LAVIGTFGSGKSTILKNFFKINLGRKVLYVSPRKALLEEFYINVCGVARXXXXXXXXXXX 4791
              + GTFG GKST+ K FF +N G+ V Y+SPR+AL +EF     G              
Sbjct: 1183 ACIFGTFGCGKSTVFKKFFNLNPGKGVFYISPRRALADEFK----GKVMAKKVGRFDKLR 1238

Query: 4790 QENWDFMTFESFILSCSTLPAGMAVILDEIQLYPPGYLDMLCYLINDGVHIVVAGDPAQS 4611
            Q+NW   TFE F+     +  GMAVILDE+QLYPPGYLD++  L   GV+ +V GDP QS
Sbjct: 1239 QKNWSICTFEIFLKKRHLVKPGMAVILDELQLYPPGYLDLVMLLCPKGVYFIVGGDPCQS 1298

Query: 4610 DYDSEKDRVWLHGIEPDHSKLLSGQVYKYVTLSKRMQNSMFIGRLPCTFNIPKTSDADED 4431
            DYD+E DR WL  +  D  +LL    YKY  LS+R +N  F+ RL C F I +  +   +
Sbjct: 1299 DYDNEMDRPWLGSMISDCDRLLGKATYKYNMLSQRFKNENFLSRLHCRF-IKEQMNEKAE 1357

Query: 4430 FEVRGGIEIIHKIEAKWKECYLVSSFEEKRLVEYYQDEKGKREEKVLTFGESTGLTFNYG 4251
              +  G+  +  I+ +++E +LVSSF+EK++V  + D     E ++LTFGESTGL F  G
Sbjct: 1358 HLLYSGLNEMVMIDKEFQEAFLVSSFDEKKIVSAHFDIP---EHRILTFGESTGLNFKMG 1414

Query: 4250 CILITQSSEKTNEQRWVTALSRFRKSICFINATGMSLHELLLVYRDRALGRFLGKRADVE 4071
             ++IT  S  T+E+RWVTALSRF  +ICF+N TG+    L  VY  R+L  FL   +  E
Sbjct: 1415 TVIITNVSSLTSEKRWVTALSRFSNNICFVNLTGLDWQTLAKVYVGRSLSTFLCACSKPE 1474

Query: 4070 DLRKFL 4053
            D+   L
Sbjct: 1475 DIVNLL 1480



 Score =  699 bits (1804), Expect(2) = 0.0
 Identities = 347/479 (72%), Positives = 392/479 (81%)
 Frame = -1

Query: 4044 GDPWLKTMIDLLQIEDXXXXXXXXXEIAREEWFKTHLPQEELESVRARWVHKILAKEARE 3865
            GDPWLK MIDL QIED         E+ +EEWFKTHLP+EELESVRA+WVH ILAKE RE
Sbjct: 1507 GDPWLKGMIDLFQIEDVEEVEEQFEEL-QEEWFKTHLPREELESVRAKWVHNILAKEFRE 1565

Query: 3864 VRMGDIVSEQFADEHSKEKGKQLTNAAERFEAIYPRHRSSDTVTFVMAVRKRLRFSKPLV 3685
            VRMG  VSEQF DE+ ++ G+ LTN AERFE IYPRHR++DTVTF+MAV+KRLRFS P  
Sbjct: 1566 VRMGFNVSEQFTDEYPRDLGQNLTNQAERFETIYPRHRANDTVTFLMAVKKRLRFSSPAK 1625

Query: 3684 EVPKLRAAKPYGPMLLKKFLKHVPLKPNRDPILMAQAKMEFETKKVSKSAAIIENHSIRS 3505
            E  KL  A  YG  +L +FL  +PLK   D  +M QAK EFE KK SKSAA IENHS RS
Sbjct: 1626 EKCKLLDASVYGKFMLDEFLSKIPLKKQHDRQMMEQAKKEFEDKKTSKSAATIENHSGRS 1685

Query: 3504 TRDWLIDIGQIFSKSQICTKFEKRFSTAKAAQSIVCFQHSVLVRFAPYMRYIELKLRESL 3325
             RDWLIDIG IFSKSQ+CTKF+ RF  AKAAQSIVCFQH VL RFAPYMRYIE KL E L
Sbjct: 1686 CRDWLIDIGLIFSKSQLCTKFDNRFRVAKAAQSIVCFQHEVLCRFAPYMRYIEKKLHEVL 1745

Query: 3324 PDRFYIHSGKGLEELDHWVRNHGFDGVCTESDYEAFDASQDQYIVAFELALMSYLGLPQS 3145
            P+R+Y+HSGKGLEEL+ WV   GF GVCTESDYEAFDASQDQY+VAFE+A+M YLGLP+ 
Sbjct: 1746 PERYYVHSGKGLEELNSWVIKGGFGGVCTESDYEAFDASQDQYMVAFEVAVMEYLGLPRD 1805

Query: 3144 LIADYEYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYNINNSDNICFAGDD 2965
            LI DY++IKTHLGSKLG+FAIMRFSGEASTFLFNTMANMLFTF++Y I   + ICFAGDD
Sbjct: 1806 LIEDYKFIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLKYEIKGHEFICFAGDD 1865

Query: 2964 MCASRKLPLSKEYESFLSKLKLKAKVQFTAKPTFCGWNLSPDGIYKKPQLVLERMCIAKE 2785
            MCAS +L    ++  FLSKLKLKAKV   +KPTFCGWNL PDGIYKKPQLV+ERMCIAKE
Sbjct: 1866 MCASERLATKHKHVGFLSKLKLKAKVFMVSKPTFCGWNLCPDGIYKKPQLVMERMCIAKE 1925

Query: 2784 TNNLHNCIDNYAIEVSYAYKMGEKAVNRMDEEELAAYYNCVRIIVKNRHLLRSNVSEVY 2608
              NL NCIDNYAIEVSYAYK+GEKA+NRMDEEE AA+YNCVRIIVKN+HLL+S++  +Y
Sbjct: 1926 KANLANCIDNYAIEVSYAYKLGEKALNRMDEEEAAAFYNCVRIIVKNKHLLKSDIRNLY 1984