BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00064555
         (479 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration...    58   1e-06
ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discolor...    57   2e-06

>gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1789

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 16/90 (17%)
 Frame = -3

Query: 477 RYDSTAVEGRHWIVRPTQEIRLRLPTEVQSRNLINGSINISFDNYLATPA-------QAT 319
           RY+S  + GR+WI+R  Q     +P  VQ+ NL++GSI+  F NY   P        +  
Sbjct: 270 RYNSDILRGRNWIIRQPQLQVTMMPRSVQTTNLLDGSISARFANYTQAPEPQQPCYNEHD 329

Query: 318 EEE---------MQHHIIAYFREEGITDLE 256
           EEE          QHH++A FR  G T++E
Sbjct: 330 EEEASDEAELAATQHHVVAMFRLSGYTEVE 359


>ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
 emb|CDN68224.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1830

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 16/90 (17%)
 Frame = -3

Query: 477 RYDSTAVEGRHWIVRPTQEIRLRLPTEVQSRNLINGSINISFDNYLATP----------- 331
           RY+S  + GR+WI+R  Q     +P  VQ+ NL++GSI+  F NY   P           
Sbjct: 272 RYNSDMLRGRNWIIRQPQLQVTMMPRSVQTTNLLDGSISARFANYTQAPEPQQPRYNGHD 331

Query: 330 -AQATEE----EMQHHIIAYFREEGITDLE 256
             +A++E      QHH++A FR  G T++E
Sbjct: 332 EEEASDEAELAATQHHVVAMFRLSGYTEVE 361