BLASTX nr result
ID: Cheilocostus21_contig00062408
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00062408
(604 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP40054.1| Retrovirus-related Pol polyprotein from transposo... 176 4e-48
gb|KYP55035.1| Retrovirus-related Pol polyprotein from transposo... 167 5e-48
gb|KYP57192.1| Retrovirus-related Pol polyprotein from transposo... 169 1e-47
gb|KYP65984.1| Retrovirus-related Pol polyprotein from transposo... 174 7e-47
gb|KYP66638.1| Retrovirus-related Pol polyprotein from transposo... 169 4e-46
emb|CAN69396.1| hypothetical protein VITISV_021034 [Vitis vinifera] 169 5e-45
gb|KYP36562.1| Retrovirus-related Pol polyprotein from transposo... 168 1e-44
gb|KYP61429.1| Retrovirus-related Pol polyprotein from transposo... 166 2e-44
gb|ABW74556.1| copia-like pol polyprotein [Boechera divaricarpa] 154 1e-39
emb|CAN62870.1| hypothetical protein VITISV_015928 [Vitis vinifera] 152 3e-39
emb|CAN68020.1| hypothetical protein VITISV_003621 [Vitis vinifera] 150 2e-38
gb|KYP35264.1| Retrovirus-related Pol polyprotein from transposo... 147 3e-38
gb|PHT84733.1| BEL1-like homeodomain protein 2 [Capsicum annuum] 149 5e-38
gb|PKU59784.1| Retrovirus-related Pol polyprotein from transposo... 139 1e-37
gb|OMO97059.1| Integrase, catalytic core [Corchorus capsularis] 144 2e-36
gb|KYP56010.1| Retrovirus-related Pol polyprotein from transposo... 129 3e-33
gb|PKU65328.1| Retrovirus-related Pol polyprotein from transposo... 125 3e-32
gb|PNX75408.1| putative retrotransposon Ty1-copia subclass prote... 130 2e-31
gb|AHL77759.1| polyprotein [Prunus persica] 130 2e-31
gb|PRQ60636.1| putative RNA-directed DNA polymerase [Rosa chinen... 125 3e-31
>gb|KYP40054.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 680
Score = 176 bits (446), Expect = 4e-48
Identities = 97/204 (47%), Positives = 123/204 (60%), Gaps = 5/204 (2%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
R YNP E+KL+++ +SGYFI YPEKSK YRFYC NH+ +IIET NA +IEN EVSGS
Sbjct: 232 RFYNPKEKKLDARTISGYFIGYPEKSKGYRFYCPNHTTRIIETGNARFIENGEVSGSETP 291
Query: 424 CIMDINKIRVDVSLP-----INVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLHPT 260
++I ++RV V L + VP N EQ N H ++
Sbjct: 292 RKVEIQEMRVQVPLTCISNKVVVPQVIEPI--------NNHEEQQTNDPITHNEVEVNEP 343
Query: 259 DINEPHGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYKDPISFSQAIESDKSDKWIDT 80
+ EP I L + R RR IPN+Y+VYLQESE D I DP++FSQAI D ++KW+D
Sbjct: 344 IVEEPQQIALRRSQRERRSAIPNDYVVYLQESENDLGIENDPVTFSQAINGDNAEKWLDA 403
Query: 79 MKDELNLMV*NNVSDLIDLPEGCK 8
MK EL M N V DL++LPEGCK
Sbjct: 404 MKAELKSMEHNRVWDLVELPEGCK 427
>gb|KYP55035.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 262
Score = 167 bits (422), Expect = 5e-48
Identities = 89/200 (44%), Positives = 125/200 (62%), Gaps = 1/200 (0%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
R+YNP E+KL+++ +SGYFI YPEKSK Y FYC NH+ +I+ET NA +IEN EVSGS
Sbjct: 65 RIYNPQEKKLDARTISGYFIGYPEKSKGYMFYCPNHNMRIVETGNARFIENGEVSGSTIP 124
Query: 424 CIMDINKIRVDVSLPINVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLHPTDINEP 245
+++ ++R+ V P+ + N+ EQH N+ H + + +P
Sbjct: 125 QKVEVKEVRMQV--PLTYASGNKVSVPLTVVSNNNEEEQHNNEPMIH-----NEPIVEQP 177
Query: 244 HGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYK-DPISFSQAIESDKSDKWIDTMKDE 68
ITL + R +RP I N+YMVYL E E D I + DP+SFSQA+ D S+KW++ MK+E
Sbjct: 178 QEITLRRSQREKRPAISNDYMVYLNELETDSSINENDPVSFSQAVSCDNSEKWLNAMKEE 237
Query: 67 LNLMV*NNVSDLIDLPEGCK 8
L M N+V DL++L EGCK
Sbjct: 238 LKSMEQNDVWDLVELLEGCK 257
>gb|KYP57192.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 360
Score = 169 bits (427), Expect = 1e-47
Identities = 89/200 (44%), Positives = 124/200 (62%), Gaps = 1/200 (0%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
R+YNP E+KL+++ +SGYFI YPEKSK Y FYC NH+ +I+ET NA +IEN EVSGS
Sbjct: 31 RIYNPQEKKLDARTISGYFIGYPEKSKGYMFYCPNHNMRIVETGNARFIENGEVSGSTIP 90
Query: 424 CIMDINKIRVDVSLPINVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLHPTDINEP 245
+++ ++R+ V P+ N+ EQH N+ H + + +P
Sbjct: 91 QKVEVKEVRMQV--PLTYASGNKVSVPLTVESNNNEEEQHNNEPMIH-----NEPIVEQP 143
Query: 244 HGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYK-DPISFSQAIESDKSDKWIDTMKDE 68
I L + R +RP I N+YMVYL E E D I + DP+SFSQA+ D S+KW++ MK+E
Sbjct: 144 QEIALRRSQREKRPAISNDYMVYLHELETDSSINENDPVSFSQAVSCDNSEKWLNAMKEE 203
Query: 67 LNLMV*NNVSDLIDLPEGCK 8
L M N+V DL++LPEGCK
Sbjct: 204 LKSMEQNDVWDLVELPEGCK 223
>gb|KYP65984.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 789
Score = 174 bits (440), Expect = 7e-47
Identities = 95/204 (46%), Positives = 122/204 (59%), Gaps = 5/204 (2%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
R YNP E+KL+++ ++GYFI YPEKSK YRFYC NH+ +IIET NA +IEN EVSGS
Sbjct: 371 RFYNPQEKKLDARTINGYFIGYPEKSKGYRFYCPNHTTRIIETGNARFIENGEVSGSETP 430
Query: 424 CIMDINKIRVDVSLP-----INVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLHPT 260
++I ++RV V L + VP N EQ N H ++
Sbjct: 431 RKVEIQEMRVQVPLTCISNKVVVPQVIEPI--------NNHEEQQTNDPITHNEVEVNEP 482
Query: 259 DINEPHGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYKDPISFSQAIESDKSDKWIDT 80
+ EP I L + R RR IPN+Y+VYLQESE D I DP++FSQAI D ++KW+D
Sbjct: 483 IVEEPQQIALRRSQRERRSAIPNDYVVYLQESENDLGIENDPVTFSQAINGDNAEKWLDA 542
Query: 79 MKDELNLMV*NNVSDLIDLPEGCK 8
MK EL M N V D ++LPEGCK
Sbjct: 543 MKAELKSMEHNRVWDFVELPEGCK 566
>gb|KYP66638.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 550
Score = 169 bits (427), Expect = 4e-46
Identities = 93/204 (45%), Positives = 121/204 (59%), Gaps = 5/204 (2%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
R YNP E+KL+++ +SGYFI YPEKSK YRFYC NH+ +IIET NA +IEN EVSGS
Sbjct: 241 RFYNPQEKKLDARTISGYFIGYPEKSKGYRFYCPNHTTRIIETGNARFIENGEVSGSETP 300
Query: 424 CIMDINKIRVDVSLP-----INVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLHPT 260
++I ++RV V L + VP N EQ N H ++
Sbjct: 301 RKVEIQEMRVQVPLTCISNKVVVPQVIEPI--------NNHEEQQTNDPITHNEVEVNEP 352
Query: 259 DINEPHGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYKDPISFSQAIESDKSDKWIDT 80
+ EP I L + R RR IPN+Y++YLQESE D I D ++FSQA+ D ++KW+D
Sbjct: 353 IVEEPQQIALRRSQRERRSAIPNDYVIYLQESENDLGIENDLVTFSQAMNGDNAEKWLDA 412
Query: 79 MKDELNLMV*NNVSDLIDLPEGCK 8
MK EL M N V D ++LPEGCK
Sbjct: 413 MKAELKSMEHNRVWDRVELPEGCK 436
>emb|CAN69396.1| hypothetical protein VITISV_021034 [Vitis vinifera]
Length = 2026
Score = 169 bits (429), Expect = 5e-45
Identities = 95/200 (47%), Positives = 124/200 (62%), Gaps = 1/200 (0%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
R+YNPHE+KL+S+ +SGYFI YP+KSK Y FYC NH +I+ET NA ++EN E+SGS E
Sbjct: 440 RIYNPHEKKLDSRTISGYFIGYPDKSKGYXFYCPNHXVRIVETXNARFLENGEISGSNEP 499
Query: 424 CIMDINKIRVDVSLPINVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLH-PTDINE 248
DI +IRVD+ P +P +E EQH N+ N+ +
Sbjct: 500 RKXDIEEIRVDIXPPF-LPQEIIVPQPXQQVEXN---EQH-NRDGSLPXENIPIENXVEP 554
Query: 247 PHGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYKDPISFSQAIESDKSDKWIDTMKDE 68
P L + R RRP I ++Y+VYL ES+FD I KDP+SFSQA+ESD S KW++ M +E
Sbjct: 555 PQPXPLRRSQRERRPAITDDYVVYLXESDFDIGIRKDPVSFSQAMESDDSSKWMEAMNEE 614
Query: 67 LNLMV*NNVSDLIDLPEGCK 8
L M N V DLI+LP CK
Sbjct: 615 LKSMAHNGVWDLIELPNNCK 634
>gb|KYP36562.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 936
Score = 168 bits (426), Expect = 1e-44
Identities = 89/200 (44%), Positives = 124/200 (62%), Gaps = 1/200 (0%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
R+YNP E+KL+++ +SGYFI YPEKSK Y FYC NH+ +I+ET NA +IEN EVSGS
Sbjct: 607 RIYNPQEKKLDARTISGYFIGYPEKSKGYMFYCPNHNMRIVETGNARFIENGEVSGSTIP 666
Query: 424 CIMDINKIRVDVSLPINVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLHPTDINEP 245
+++ ++R+ V P+ N+ EQH N+ H + + +P
Sbjct: 667 QKVEVKEVRMQV--PLTYASGNKVSVPLTVESNNNEEEQHNNEPMIH-----NEPIVEQP 719
Query: 244 HGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYK-DPISFSQAIESDKSDKWIDTMKDE 68
I L + R +RP I N+YMVYL E E D I + DP+SFSQA+ D S+KW++ MK+E
Sbjct: 720 QEIALRRSQREKRPAISNDYMVYLHELENDSSINENDPVSFSQAVSCDNSEKWLNAMKEE 779
Query: 67 LNLMV*NNVSDLIDLPEGCK 8
L M N+V DL++LPEGCK
Sbjct: 780 LKSMEQNDVWDLVELPEGCK 799
>gb|KYP61429.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 736
Score = 166 bits (421), Expect = 2e-44
Identities = 89/200 (44%), Positives = 123/200 (61%), Gaps = 1/200 (0%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
R+YNP E+KL+++ +SGYFI YPEKSK Y FYC NH+ +I+ET NA +IEN EVSGS
Sbjct: 488 RIYNPQEKKLDARTISGYFIGYPEKSKGYMFYCPNHNMRIVETGNARFIENGEVSGSTIP 547
Query: 424 CIMDINKIRVDVSLPINVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLHPTDINEP 245
+++ ++R+ V P+ N+ EQH N+ H + + +P
Sbjct: 548 QKVEVKEVRMQV--PLTYASGNKVSVPLTVESNNNEEEQHNNEPMIH-----NEPIVEQP 600
Query: 244 HGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYK-DPISFSQAIESDKSDKWIDTMKDE 68
I L + R +RP I N+YMVYL E E D I + DP+SFSQA+ D S+KW++ MKDE
Sbjct: 601 QEIALRRSQREKRPAISNDYMVYLHELETDSSINENDPVSFSQAVSCDNSEKWLNAMKDE 660
Query: 67 LNLMV*NNVSDLIDLPEGCK 8
L M N+V DL++L EGCK
Sbjct: 661 LKSMEQNDVWDLVELLEGCK 680
>gb|ABW74556.1| copia-like pol polyprotein [Boechera divaricarpa]
Length = 931
Score = 154 bits (388), Expect = 1e-39
Identities = 85/201 (42%), Positives = 124/201 (61%), Gaps = 4/201 (1%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
++YNPHE+KL+S+ VSG+FI YPEKSK Y FYC NHS +I+ET NA +IEN+E SGS +
Sbjct: 371 KLYNPHEKKLDSRTVSGFFIGYPEKSKGYTFYCPNHSMRIVETGNARFIENIETSGSGKP 430
Query: 424 CIMDINKIRVDVSLPINVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLH-PTDINE 248
+DI ++++ V P+ P Q+D+ Q AP N++ P I E
Sbjct: 431 RKVDIQEVQIKVLPPVIAP-------NVVVPNVQHDIVQ-----APLNENNVNEPVTIQE 478
Query: 247 PHG---ITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYKDPISFSQAIESDKSDKWIDTM 77
+ + L + +R RR IP++Y+VY ESE D + +DPISF +A++SD S+ W+
Sbjct: 479 ENSEPQVNLRRSIRERRSAIPSDYVVYAIESECDLSLDEDPISFQKAMKSDSSENWLIAA 538
Query: 76 KDELNLMV*NNVSDLIDLPEG 14
K+E+ M N V DL++LP G
Sbjct: 539 KEEMKSMGDNKVWDLVELPNG 559
>emb|CAN62870.1| hypothetical protein VITISV_015928 [Vitis vinifera]
Length = 764
Score = 152 bits (384), Expect = 3e-39
Identities = 91/196 (46%), Positives = 121/196 (61%), Gaps = 2/196 (1%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVE- 428
R+Y+PHE+KL+ + +SGYFI YP KSK YRFY NHS KI+ET N +IEN E+ GS +
Sbjct: 573 RIYSPHEKKLDFKTISGYFIDYPMKSKGYRFYYPNHSTKIVETGNXRFIENGEIRGSDQL 632
Query: 427 RCIMDINKIRVDVSLPINVPXXXXXXXXXXXLEEQNDVEQHLN-KAAPHEITNLHPTDIN 251
+ +I ++RV V LPI +E +VEQ +N ++ +EI P +
Sbjct: 633 QKKTNIQEVRVQVPLPIT----SXEIVVPTIVESFENVEQQINDQSLSNEIITNEPI-ME 687
Query: 250 EPHGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYKDPISFSQAIESDKSDKWIDTMKD 71
EP TL K R RRP I N+Y+VYLQES++D KD +SFSQAI SD WID M D
Sbjct: 688 EPQQSTLRKSQRERRPAISNDYVVYLQESDYDIGTSKDLVSFSQAIGYXDSDXWIDAMND 747
Query: 70 ELNLMV*NNVSDLIDL 23
EL M N V +L+++
Sbjct: 748 ELKSMDQNKVWELVEI 763
>emb|CAN68020.1| hypothetical protein VITISV_003621 [Vitis vinifera]
Length = 1180
Score = 150 bits (379), Expect = 2e-38
Identities = 90/200 (45%), Positives = 122/200 (61%), Gaps = 1/200 (0%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
R+YNPHE+KL+S+ VSGYFI YP+KSK I+ET NA ++EN E+SGS E
Sbjct: 634 RIYNPHEKKLDSRTVSGYFIGYPDKSK-----------GIVETGNARFLENGEISGSNEP 682
Query: 424 CIMDINKIRVDVSLPINVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLHPTD-INE 248
+DI +IRVD+ P+ +P +E D EQ+ N+ + N+ + +
Sbjct: 683 RKVDIEEIRVDIP-PLFLPQEIIVPQPVQQVE---DNEQN-NRDGSLPLENIAIENAVEP 737
Query: 247 PHGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYKDPISFSQAIESDKSDKWIDTMKDE 68
P L + R RRP I ++Y+VYLQES+FD I KDP+SFSQA+ESD S KW++ M +E
Sbjct: 738 PQPAPLRRSQRERRPAITDDYVVYLQESDFDIGIRKDPVSFSQAMESDDSSKWMEAMNEE 797
Query: 67 LNLMV*NNVSDLIDLPEGCK 8
L M N V DLI+LP CK
Sbjct: 798 LKSMAHNGVWDLIELPNNCK 817
>gb|KYP35264.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 544
Score = 147 bits (372), Expect = 3e-38
Identities = 81/193 (41%), Positives = 112/193 (58%), Gaps = 1/193 (0%)
Frame = -1
Query: 583 QKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVERCIMDINK 404
+++ I GYFI YPEKSK Y FYC HS + ET NA +IEN EVSGS +++N+
Sbjct: 259 ERMEKLIKKGYFIGYPEKSKGYMFYCPKHSMRFFETGNARFIENGEVSGSTIPQKVEVNE 318
Query: 403 IRVDVSLPINVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLHPTDINEPHGITLNK 224
+R+ V P+ + N+ EQH N+ H + + PH ITL +
Sbjct: 319 VRMQV--PLTYASRNKVSVPLTIVSNNNEEEQHNNEPMIH-----NELIVEHPHEITLRR 371
Query: 223 PVRIRRPGIPNNYMVYLQESEFDYDIYK-DPISFSQAIESDKSDKWIDTMKDELNLMV*N 47
R +RP I N+YMVYL E E D I + DP+SFSQA+ D +KW+++MK+EL N
Sbjct: 372 SQREKRPAISNDYMVYLHELEIDSSINENDPVSFSQAVSCDNFEKWLNSMKEELKSTEQN 431
Query: 46 NVSDLIDLPEGCK 8
+V DL++LPE CK
Sbjct: 432 DVWDLVELPEDCK 444
>gb|PHT84733.1| BEL1-like homeodomain protein 2 [Capsicum annuum]
Length = 885
Score = 149 bits (376), Expect = 5e-38
Identities = 83/183 (45%), Positives = 111/183 (60%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
RVYNP E+KL+S+ +SG+FI YPEKSK YRFYC N S +I+ET NA +IEN EVSGS E
Sbjct: 707 RVYNPQEKKLDSRTISGFFIGYPEKSKGYRFYCPNRSTRIVETGNARFIENGEVSGSEEP 766
Query: 424 CIMDINKIRVDVSLPINVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLHPTDINEP 245
+ I ++RV + LP +++ N EQ +N P + ++E
Sbjct: 767 RNVKIKEVRVKIPLPCT---YFKFVVLEDVVQQSNQQEQQIN--IPTNEAIIDEPVVDES 821
Query: 244 HGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYKDPISFSQAIESDKSDKWIDTMKDEL 65
+ + R R+ I ++Y+VY ESE D I DP+SFSQAIES+ SDKWI+ MKDEL
Sbjct: 822 QEVASRRSQRQRKSAISDDYLVYPHESETDLGIDDDPVSFSQAIESNNSDKWINAMKDEL 881
Query: 64 NLM 56
M
Sbjct: 882 KSM 884
>gb|PKU59784.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 232
Score = 139 bits (351), Expect = 1e-37
Identities = 80/169 (47%), Positives = 104/169 (61%), Gaps = 3/169 (1%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
++YNPHE+KL+S+ SG+FI Y EKSK YRFYC NHS KI++T NA +IEN E SGS+E
Sbjct: 65 KIYNPHERKLDSRTTSGFFIGYLEKSKGYRFYCPNHSMKIVKTENARFIENDESSGSIEP 124
Query: 424 CIMDINKIRVDVSLPI---NVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLHPTDI 254
+++ ++ V +SLPI V E+ ND + +EI P I
Sbjct: 125 RNVEVKEVGVKISLPITSNKVVIPIVEKFDNIQDEQMNDY------TSQNEIVTNEPI-I 177
Query: 253 NEPHGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYKDPISFSQAIES 107
+EP I L + R++R I NNYMVY QES+FD I DP SFSQAIES
Sbjct: 178 DEPQEIALRRSTRVKRYVILNNYMVYFQESDFDLGIDDDPASFSQAIES 226
>gb|OMO97059.1| Integrase, catalytic core [Corchorus capsularis]
Length = 766
Score = 144 bits (364), Expect = 2e-36
Identities = 86/214 (40%), Positives = 123/214 (57%), Gaps = 15/214 (7%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
R+YNPHE+KL+++ +SGYFI YPEKSK YRFY NHS +I+E+ NA +IEN + SGS E+
Sbjct: 324 RIYNPHEKKLDARTISGYFIDYPEKSKGYRFYYPNHSTRIVESGNASFIENGQFSGSGEQ 383
Query: 424 CIMDINKIRVD---------VSLPI------NVPXXXXXXXXXXXLEEQNDVEQHLNKAA 290
+DI +I+ + V +P+ NV E D ++ A
Sbjct: 384 RKVDIKEIQGETPMSNDSHQVVVPLVVSQLHNVREQRIHVRNLQGEHEGVDPPNQQDEPA 443
Query: 289 PHEITNLHPTDINEPHGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYKDPISFSQAIE 110
+ + T +NEP + L + VR RRP I ++ VY E E D I DP+SF QA+E
Sbjct: 444 NNTQVEIEQT-VNEPQEVALRRSVRQRRPTISQDFEVYSIEHECDLSIDDDPVSFKQAME 502
Query: 109 SDKSDKWIDTMKDELNLMV*NNVSDLIDLPEGCK 8
+ S+KW++ +K+EL M N V +LI+L EG K
Sbjct: 503 CNNSEKWLNAIKEELKSMDDNKVWELIELLEGSK 536
>gb|KYP56010.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 268
Score = 129 bits (324), Expect = 3e-33
Identities = 71/169 (42%), Positives = 95/169 (56%)
Frame = -1
Query: 514 FYCSNHSPKIIETANA*YIENVEVSGSVERCIMDINKIRVDVSLPINVPXXXXXXXXXXX 335
FYC HS +I+ET NA +IEN E SGS ++I ++RV V P+
Sbjct: 2 FYCPTHSTRIVETGNARFIENGETSGSETSQNVEIKEVRVQV--PLTSTSTSRIVVPHVV 59
Query: 334 LEEQNDVEQHLNKAAPHEITNLHPTDINEPHGITLNKPVRIRRPGIPNNYMVYLQESEFD 155
N EQ +N + N P + +P I L + R +R I N+Y+VYLQESE D
Sbjct: 60 EPNNNQEEQQINDP----VVNNEPV-VEQPQEIVLRRSQRKKRSAISNDYVVYLQESEND 114
Query: 154 YDIYKDPISFSQAIESDKSDKWIDTMKDELNLMV*NNVSDLIDLPEGCK 8
I DP+SFS+AI D S+KW+D M DEL M N++ DL++LPEGCK
Sbjct: 115 LSIDNDPVSFSEAINGDNSEKWLDAMNDELKSMTQNDIWDLVELPEGCK 163
>gb|PKU65328.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 222
Score = 125 bits (314), Expect = 3e-32
Identities = 67/164 (40%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
++YNPHE++L+ +I SG+FI Y E SK YRFYC NHS +I+ET NA +IEN E+SGS+E
Sbjct: 65 KIYNPHERRLDIRITSGFFIGYLENSKGYRFYCPNHSTEIVETGNAKFIENDEISGSMEP 124
Query: 424 CIMDINKIRVDVSLPI---NVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLHPTDI 254
+++ ++ + +SLPI + EQ +V NK +++ I
Sbjct: 125 RNVEVKEVGMKISLPITSNKLVISVFVEKFNNIHYEQKNVYTSQNKIVTNKLI------I 178
Query: 253 NEPHGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYKDPISFS 122
+E + L + R++R I N+YM+YLQES+FD I DP+SFS
Sbjct: 179 DESQEVALRRFTRVKRYAISNDYMIYLQESDFDLGIDDDPVSFS 222
>gb|PNX75408.1| putative retrotransposon Ty1-copia subclass protein, partial
[Trifolium pratense]
Length = 868
Score = 130 bits (328), Expect = 2e-31
Identities = 79/216 (36%), Positives = 115/216 (53%), Gaps = 17/216 (7%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGS--V 431
R+YNP E+KL+ + SG+FI Y EKSK YRFYC + +I+E+ NA ++E+ +SGS
Sbjct: 260 RIYNPQEKKLDPRTFSGHFIGYAEKSKGYRFYCPSLKTRIVESRNAKFLEDHLISGSDHF 319
Query: 430 ERCIMDINKIRVDVS------LPINVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHE---- 281
+ I + N + S I+ P QN H+ + E
Sbjct: 320 KDIISEKNHHEAESSRSSDRLFVIHTPQVQKGVRQTTIEIPQNVRNDHVGQVIDEEHQEN 379
Query: 280 -----ITNLHPTDINEPHGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYKDPISFSQA 116
I + D E + ITL + R+R+P IPN++ VYLQES+++ DP +FSQA
Sbjct: 380 VEQPVIEPVEQQDPQEDNEITLRRSTRVRKPAIPNDFEVYLQESDYNVGTENDPETFSQA 439
Query: 115 IESDKSDKWIDTMKDELNLMV*NNVSDLIDLPEGCK 8
+ +S+ W D MK+E+N MV N V DL+ LP G K
Sbjct: 440 MSCKESNLWHDAMKEEMNSMVSNKVWDLVTLPNGVK 475
>gb|AHL77759.1| polyprotein [Prunus persica]
Length = 1363
Score = 130 bits (328), Expect = 2e-31
Identities = 73/211 (34%), Positives = 114/211 (54%), Gaps = 12/211 (5%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
+ YNP E+KL+S+ V+ +F+ YP+++K YRFYC N++ + +ET A +IE+ G+ E
Sbjct: 675 KFYNPSEKKLDSKTVTCFFVGYPDRTKGYRFYCPNNTTRFMETQRAIFIEDESEQGTDEN 734
Query: 424 CIMDINK-----------IRVDVSLPINVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEI 278
D N IR LP +E+N E + +A P
Sbjct: 735 FDFDENLEDEEFTGKEDLIRETTVLPFT---DSSDKQISPIHDERNLEENQITEAQPTAA 791
Query: 277 TNLH-PTDINEPHGITLNKPVRIRRPGIPNNYMVYLQESEFDYDIYKDPISFSQAIESDK 101
N+ +P+ L + R +RP + N+Y VYLQESE D + +DP+SF QA++S++
Sbjct: 792 ENMQIDQQEQQPYNSELRRSQRTKRPALSNDYYVYLQESEHDINTIEDPVSFKQAVQSEE 851
Query: 100 SDKWIDTMKDELNLMV*NNVSDLIDLPEGCK 8
+KW++ M+ EL M N V L+ LP+GCK
Sbjct: 852 CEKWMEAMESELQSMSKNGVWKLVALPQGCK 882
>gb|PRQ60636.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 309
Score = 125 bits (313), Expect = 3e-31
Identities = 78/218 (35%), Positives = 113/218 (51%), Gaps = 19/218 (8%)
Frame = -1
Query: 604 RVYNPHEQKLNSQIVSGYFIVYPEKSKMYRFYCSNHSPKIIETANA*YIENVEVSGSVER 425
R YNP E KL+ + +S +FI YPE S+ YRFYC +H+ +IIET A +++ + S S E
Sbjct: 63 RPYNPQEGKLDPKTISAHFIGYPENSRGYRFYCPSHTTRIIETNKAIFLDEINYSHSYEN 122
Query: 424 CIMDINKIRVDVSLPINVPXXXXXXXXXXXLEEQNDVEQHLNKAAPHEITNLHPTDIN-E 248
++ ++ D S I +P + V ++ N + + L + E
Sbjct: 123 LELEFQELPEDESENIGIPITFETAAGDIEQPQLEVVAENQNNNFENVVGELDEVEQEPE 182
Query: 247 PHGI------------TLNKPVRIRRPGI-PNNYMVYLQESEFDYDIYKDPISFSQAIES 107
P + L + RIR+P I P YMVYLQE+EFD+ DP +FSQAI S
Sbjct: 183 PQNLQEAQVDPEAAPQQLRRSGRIRKPAINPQEYMVYLQEAEFDWGEDNDPENFSQAINS 242
Query: 106 DKSDKWIDTMKDELNLMV*NNVSDLID-----LPEGCK 8
D+S KW + M+ EL M NNV +L++ P GCK
Sbjct: 243 DQSLKWTEAMEAELQSMYDNNVWELVEPTGSHKPIGCK 280