BLASTX nr result

ID: Cheilocostus21_contig00061838 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00061838
         (589 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFS35485.1| hypothetical chloroplast RF2, partial (plastid) [...    61   1e-10
gb|AFK49017.1| unknown [Lotus japonicus]                               59   1e-08

>gb|AFS35485.1| hypothetical chloroplast RF2, partial (plastid) [Fragaria
           pentaphylla]
          Length = 74

 Score = 60.8 bits (146), Expect(2) = 1e-10
 Identities = 31/47 (65%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
 Frame = -3

Query: 137 FFPSRTLYETS*LFNFEHPTFT*FV--GFNKQSIFHKQMCSTTCGSG 3
           FFPSRT Y+T  L N E+P FT F   GFNKQSIFH Q CST C SG
Sbjct: 23  FFPSRTFYKTFGLPNLEYPIFTQFTFTGFNKQSIFHDQGCSTICSSG 69



 Score = 33.1 bits (74), Expect(2) = 1e-10
 Identities = 16/23 (69%), Positives = 19/23 (82%)
 Frame = -2

Query: 201 QEFSLFLVFMNQIKFNGSFVSIF 133
           QEFSLFL FM+QI+F+G F S F
Sbjct: 1   QEFSLFLRFMDQIQFSGIFHSHF 23


>gb|AFK49017.1| unknown [Lotus japonicus]
          Length = 63

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 28/44 (63%), Positives = 31/44 (70%)
 Frame = -3

Query: 137 FFPSRTLYETS*LFNFEHPTFT*FVGFNKQSIFHKQMCSTTCGS 6
           FFPSR  Y+T  L N E+PTF  F GFNKQSIF+ Q CST C S
Sbjct: 14  FFPSREFYKTLGLTNLEYPTFRQFTGFNKQSIFYDQGCSTFCSS 57


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