BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00059910
         (523 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OMO85295.1| reverse transcriptase [Corchorus capsularis]            56   6e-06

>gb|OMO85295.1| reverse transcriptase [Corchorus capsularis]
          Length = 1267

 Score = 56.2 bits (134), Expect = 6e-06
 Identities = 52/180 (28%), Positives = 70/180 (38%), Gaps = 6/180 (3%)
 Frame = +2

Query: 2    LKV*PKI*FFGWXXXXXXXXXXXXXXXMGISIDTTCT*CGKKEENNMILCYLFYKCDFVQ 181
            LK  PK+ FF W                G  ++ +C  C  +EE    L +LF  C   Q
Sbjct: 999  LKFLPKLKFFLWEVILGIVPTRSLLFHRGFIVNLSCPFCNSEEET---LQHLFRDCIVTQ 1055

Query: 182  ELWQQQDRYAAPKYTARQAWEDGT*LKEGKQQNDKDIPALLILLIFWQI*KARNAHIFRN 361
              WQQ      P  +    W     L++   QN     +LL   + W+I   RN  +F+N
Sbjct: 1056 TFWQQAGFIFQPT-SPFDLWLKDNLLRKDYHQNPSIPFSLLFTHLLWEIWLERNQVVFKN 1114

Query: 362  EEIAPNKVIRLVLVELQDTKAAEERDKFSL----KEDQQVE--FSWTRPREGQIKINTDG 523
              +  N V R         KA E    FSL    K  Q +    SW  P +G  K+N DG
Sbjct: 1115 VRVRENLVSRAF------NKAVE---FFSLTGRIKRVQSISAPVSWKPPDQGWFKVNCDG 1165