BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00059399
         (822 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACH86210.1| unknown [Citrus yellow mosaic virus]                   317   e-103
gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]                   330   e-100
gb|ANK58545.1| polyprotein [Fig badnavirus 1]                         320   3e-96
ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discolor...   319   5e-96
gb|ATZ69486.1| ORF3 polyprotein [Cacao swollen shoot Ghana N virus]   318   9e-96
gb|ANK58548.1| polyprotein [Fig badnavirus 1]                         317   2e-95
gb|ANK58539.1| polyprotein [Fig badnavirus 1]                         317   2e-95
gb|ANK58536.1| polyprotein [Fig badnavirus 1]                         317   2e-95
gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration...   317   2e-95
gb|AER00538.1| ORF III [Citrus yellow mosaic virus]                   317   2e-95
gb|ANK58542.1| polyprotein [Fig badnavirus 1]                         317   2e-95
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]               316   4e-95
gb|AER00544.1| ORF III [Citrus yellow mosaic virus]                   315   1e-94
gb|ASG91853.1| polyprotein [Cacao swollen shoot virus]                315   1e-94
ref|NP_569153.1| unknown [Citrus yellow mosaic virus] >gi|164169...   314   2e-94
gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]               314   2e-94
gb|ATZ69482.1| ORF3 polyprotein [Cacao swollen shoot Ghana M virus]   314   2e-94
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]...   314   2e-94
gb|ATZ69445.1| ORF3 polyprotein [Cacao swollen shoot Togo A virus]    314   3e-94
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]               313   5e-94

>gb|ACH86210.1| unknown [Citrus yellow mosaic virus]
          Length = 463

 Score =  317 bits (811), Expect = e-103
 Identities = 153/254 (60%), Positives = 198/254 (77%), Gaps = 3/254 (1%)
 Frame = +1

Query: 67  PIDTPTLEEG---PSFEDQIRRYSQNQQRLFNARRFIRRLTGERYHQTLEQYISPEEQLQ 237
           P  T  +EE    P ++DQIR Y Q Q+R  N  R   +L G  Y+QTLEQ + PE  LQ
Sbjct: 15  PATTARVEERNNTPLYDDQIRDYRQWQRRRHNMGRRWNQLIGRPYNQTLEQVVDPEVALQ 74

Query: 238 LSLRERISLVPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRS 417
           LS++ER  LVPAEVLYRSR+DD +H+VY+HRSEEA+ CVD   +DR ++Q ES  QL RS
Sbjct: 75  LSMQERARLVPAEVLYRSRNDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRS 134

Query: 418 NMQFIYIGLMQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVP 597
            M FI++G++QVR+QILHR++EGT  L++FRDNRWQGD SI ATME+DL  G Q++Y++P
Sbjct: 135 GMSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIP 194

Query: 598 DILMTIRDFFQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDF 777
           D +MT+RDF +N+QISI T+GY NW+ GEAN+L+++GIVGRLSNTPN+ FAYQI +VTD+
Sbjct: 195 DTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVTDY 254

Query: 778 LTSRGIRALPGRRY 819
           L S GI+ALPGRRY
Sbjct: 255 LVSHGIQALPGRRY 268


>gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]
          Length = 1846

 Score =  330 bits (845), Expect = e-100
 Identities = 157/245 (64%), Positives = 197/245 (80%), Gaps = 4/245 (1%)
 Frame = +1

Query: 97  PSFEDQIRRYSQNQQRLF----NARRFIRRLTGERYHQTLEQYISPEEQLQLSLRERISL 264
           P +EDQIR Y + Q+R F     ARR   R+TG R++QTLEQ ++PEE LQ S++ER +L
Sbjct: 24  PLYEDQIRDYRRGQRRRFVARQAARRIASRITGRRFNQTLEQVVNPEESLQQSMQERANL 83

Query: 265 VPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRSNMQFIYIGL 444
           VPAEVLYRSR DD NHRVY HRSEEA+ CVD Q  DR ++Q +S+  L+RS  QFI++G+
Sbjct: 84  VPAEVLYRSRRDDINHRVYSHRSEEAILCVDGQQQDRLVIQPDSYEALRRSGFQFIHLGI 143

Query: 445 MQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVPDILMTIRDF 624
           MQVR+QILHR +EGT  L++FRDNRWQGD +I ATME+DL  G QL+YV+PD +MT+RDF
Sbjct: 144 MQVRIQILHRADEGTAALVVFRDNRWQGDQAIFATMEIDLTSGTQLVYVIPDTMMTLRDF 203

Query: 625 FQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDFLTSRGIRAL 804
           ++NIQISI TRGYENWR GEAN+L+++G++ RLSNTPN+ FAYQI  VTD L SRG+RAL
Sbjct: 204 YRNIQISILTRGYENWRNGEANLLVTRGVMARLSNTPNVGFAYQIQHVTDHLESRGVRAL 263

Query: 805 PGRRY 819
           PGRRY
Sbjct: 264 PGRRY 268


>gb|ANK58545.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  320 bits (819), Expect = 3e-96
 Identities = 156/245 (63%), Positives = 197/245 (80%), Gaps = 4/245 (1%)
 Frame = +1

Query: 97  PSFEDQIRRYSQNQQRLFNARRFIRR----LTGERYHQTLEQYISPEEQLQLSLRERISL 264
           P FEDQIR Y +NQ+R F A + +RR    + G RY+QTLEQ + PE +L LS++ER +L
Sbjct: 27  PLFEDQIRDYRRNQRRRFVAEQAVRRTMGRMRGRRYNQTLEQIVDPEVELNLSMQERANL 86

Query: 265 VPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRSNMQFIYIGL 444
           VPAEVLYRSR D+ NH+VY HRSEEA+ CV  Q  DR  +Q  SF +LQRS MQFI++G+
Sbjct: 87  VPAEVLYRSRRDNINHQVYNHRSEEAMLCVGEQ-QDRMFIQPNSFQELQRSGMQFIHLGV 145

Query: 445 MQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVPDILMTIRDF 624
           +QVRLQILHR +EGTM L++FRDNRWQGD SI A  EVDL  G+Q++YV+PD +MTI DF
Sbjct: 146 LQVRLQILHRADEGTMALVVFRDNRWQGDQSIFAISEVDLTRGSQIVYVIPDTMMTIGDF 205

Query: 625 FQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDFLTSRGIRAL 804
           ++N+QISIQT GYENW+ GEAN+LI++G+ GRLSNTPN+ FAY+IS VTD+L SRG++AL
Sbjct: 206 YRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRISHVTDYLASRGVQAL 265

Query: 805 PGRRY 819
           PGRRY
Sbjct: 266 PGRRY 270


>ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
 emb|CDN68224.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1830

 Score =  319 bits (817), Expect = 5e-96
 Identities = 155/246 (63%), Positives = 200/246 (81%), Gaps = 4/246 (1%)
 Frame = +1

Query: 97  PSFEDQIRRYSQNQQRLFNA----RRFIRRLTGERYHQTLEQYISPEEQLQLSLRERISL 264
           P FEDQ+R Y +NQ+R F A    RR I ++ G RY+QTLEQ I PEE+L  S++ER +L
Sbjct: 30  PLFEDQVRDYRRNQRRRFIAEQALRRTIGKIRGRRYNQTLEQTIDPEEELSQSMQERANL 89

Query: 265 VPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRSNMQFIYIGL 444
           VPAEVLYR+R D+ NH+VY HRSEEA+ CV  Q  DRS +Q +SF +LQRS MQFI++G+
Sbjct: 90  VPAEVLYRTRRDNINHQVYNHRSEEAMLCVGEQ-QDRSFIQPDSFQELQRSGMQFIHLGV 148

Query: 445 MQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVPDILMTIRDF 624
           +QVR+QILHR +EGTM L++FRDNRWQGD SI A  EVDL  G+Q++YV+PD +MTI DF
Sbjct: 149 LQVRIQILHRADEGTMALVVFRDNRWQGDQSIFAIAEVDLTRGSQIVYVIPDTMMTIGDF 208

Query: 625 FQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDFLTSRGIRAL 804
           ++N+QISIQT GYE+W+ GEAN+LI++G+ GRLSNTPN+ FAY+IS VTD+L SRG++AL
Sbjct: 209 YRNVQISIQTTGYESWQNGEANLLITRGMTGRLSNTPNVGFAYRISHVTDYLASRGVQAL 268

Query: 805 PGRRYD 822
           PGRRY+
Sbjct: 269 PGRRYN 274


>gb|ATZ69486.1| ORF3 polyprotein [Cacao swollen shoot Ghana N virus]
          Length = 1881

 Score =  318 bits (815), Expect = 9e-96
 Identities = 151/246 (61%), Positives = 194/246 (78%), Gaps = 4/246 (1%)
 Frame = +1

Query: 97  PSFEDQIRRYSQNQQRLFNARRFIRRL----TGERYHQTLEQYISPEEQLQLSLRERISL 264
           P FEDQ+R Y QNQ+RLFN +R  RRL    TG RY  TLEQ + P+  L+LS++ER  L
Sbjct: 25  PLFEDQVRDYRQNQRRLFNLQRATRRLRGSVTGRRYQDTLEQEVDPQAALRLSMQERARL 84

Query: 265 VPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRSNMQFIYIGL 444
           VPAEVLYRSR D  +HRVY HRSEE++ C D   IDR+ +Q ES  +LQRS M FI+IG+
Sbjct: 85  VPAEVLYRSRRDTVHHRVYTHRSEESILCTDGNQIDRTFIQPESLERLQRSGMAFIHIGI 144

Query: 445 MQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVPDILMTIRDF 624
           +QVR+QILHR+ EGTM L++FRDNRW+GD SI ATMEVDL  G+QL++V+PD +MTI DF
Sbjct: 145 LQVRIQILHRQEEGTMALVVFRDNRWEGDQSIFATMEVDLTHGSQLVFVIPDTMMTIGDF 204

Query: 625 FQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDFLTSRGIRAL 804
            +N+Q+SI TRGY+NW+ GEAN+LI++ + GRLSNTPN+ FAYQIS VTD+L S G++A+
Sbjct: 205 ARNVQLSILTRGYQNWQNGEANLLITRSMTGRLSNTPNVAFAYQISDVTDYLASHGVKAI 264

Query: 805 PGRRYD 822
            G++YD
Sbjct: 265 AGKKYD 270


>gb|ANK58548.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  317 bits (813), Expect = 2e-95
 Identities = 155/245 (63%), Positives = 196/245 (80%), Gaps = 4/245 (1%)
 Frame = +1

Query: 97  PSFEDQIRRYSQNQQRLFNARRFIRR----LTGERYHQTLEQYISPEEQLQLSLRERISL 264
           P FEDQIR Y +NQ+R F A + +RR    + G RY+QTLEQ + PE +L  S++ER +L
Sbjct: 27  PLFEDQIRDYRRNQRRRFVAEQAVRRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANL 86

Query: 265 VPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRSNMQFIYIGL 444
           VPAEVLYRSR D+ NH+VY HRSEEA+ CV  Q  DR  +Q  SF +LQRS MQFI++G+
Sbjct: 87  VPAEVLYRSRRDNINHQVYNHRSEEAMLCVGEQ-QDRMFIQPNSFQELQRSGMQFIHLGV 145

Query: 445 MQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVPDILMTIRDF 624
           +QVRLQILHR +EGTM L++FRDNRWQGD SI A  EVDL  G+Q++YV+PD +MTI DF
Sbjct: 146 LQVRLQILHRADEGTMALVVFRDNRWQGDQSIFAISEVDLTRGSQIVYVIPDTMMTIGDF 205

Query: 625 FQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDFLTSRGIRAL 804
           ++N+QISIQT GYENW+ GEAN+LI++G+ GRLSNTPN+ FAY+IS VTD+L SRG++AL
Sbjct: 206 YRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRISHVTDYLASRGVQAL 265

Query: 805 PGRRY 819
           PGRRY
Sbjct: 266 PGRRY 270


>gb|ANK58539.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  317 bits (813), Expect = 2e-95
 Identities = 155/245 (63%), Positives = 196/245 (80%), Gaps = 4/245 (1%)
 Frame = +1

Query: 97  PSFEDQIRRYSQNQQRLFNARRFIRR----LTGERYHQTLEQYISPEEQLQLSLRERISL 264
           P FEDQIR Y +NQ+R F A + +RR    + G RY+QTLEQ + PE +L  S++ER +L
Sbjct: 27  PLFEDQIRDYRRNQRRRFVAEQAVRRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANL 86

Query: 265 VPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRSNMQFIYIGL 444
           VPAEVLYRSR D+ NH+VY HRSEEA+ CV  Q  DR  +Q  SF +LQRS MQFI++G+
Sbjct: 87  VPAEVLYRSRRDNINHQVYNHRSEEAMLCVGEQ-QDRMFIQPNSFQELQRSGMQFIHLGV 145

Query: 445 MQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVPDILMTIRDF 624
           +QVRLQILHR +EGTM L++FRDNRWQGD SI A  EVDL  G+Q++YV+PD +MTI DF
Sbjct: 146 LQVRLQILHRADEGTMALVVFRDNRWQGDQSIFAISEVDLTRGSQIVYVIPDTMMTIGDF 205

Query: 625 FQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDFLTSRGIRAL 804
           ++N+QISIQT GYENW+ GEAN+LI++G+ GRLSNTPN+ FAY+IS VTD+L SRG++AL
Sbjct: 206 YRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRISHVTDYLASRGVQAL 265

Query: 805 PGRRY 819
           PGRRY
Sbjct: 266 PGRRY 270


>gb|ANK58536.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  317 bits (813), Expect = 2e-95
 Identities = 155/245 (63%), Positives = 196/245 (80%), Gaps = 4/245 (1%)
 Frame = +1

Query: 97  PSFEDQIRRYSQNQQRLFNARRFIRR----LTGERYHQTLEQYISPEEQLQLSLRERISL 264
           P FEDQIR Y +NQ+R F A + +RR    + G RY+QTLEQ + PE +L  S++ER +L
Sbjct: 27  PLFEDQIRDYRRNQRRRFVAEQAVRRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANL 86

Query: 265 VPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRSNMQFIYIGL 444
           VPAEVLYRSR D+ NH+VY HRSEEA+ CV  Q  DR  +Q  SF +LQRS MQFI++G+
Sbjct: 87  VPAEVLYRSRRDNINHQVYNHRSEEAMLCVGEQ-QDRMFIQPNSFQELQRSGMQFIHLGV 145

Query: 445 MQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVPDILMTIRDF 624
           +QVRLQILHR +EGTM L++FRDNRWQGD SI A  EVDL  G+Q++YV+PD +MTI DF
Sbjct: 146 LQVRLQILHRTDEGTMALVVFRDNRWQGDQSIFAISEVDLTRGSQIVYVIPDTMMTIGDF 205

Query: 625 FQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDFLTSRGIRAL 804
           ++N+QISIQT GYENW+ GEAN+LI++G+ GRLSNTPN+ FAY+IS VTD+L SRG++AL
Sbjct: 206 YRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRISHVTDYLASRGVQAL 265

Query: 805 PGRRY 819
           PGRRY
Sbjct: 266 PGRRY 270


>gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1789

 Score =  317 bits (812), Expect = 2e-95
 Identities = 153/246 (62%), Positives = 200/246 (81%), Gaps = 4/246 (1%)
 Frame = +1

Query: 97  PSFEDQIRRYSQNQQRLFNA----RRFIRRLTGERYHQTLEQYISPEEQLQLSLRERISL 264
           P FEDQ+R Y ++Q+R F A    RR I ++ G RY+QTLEQ + PEE+L  S++ER +L
Sbjct: 28  PLFEDQVRDYRRSQRRRFVAEQALRRTIGKIRGRRYNQTLEQIVDPEEELSQSMQERANL 87

Query: 265 VPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRSNMQFIYIGL 444
           VPAEVLYR+R D+ NH+VY HRSEEA+ CV  Q  DRS +Q +SF +LQRS MQFI++G+
Sbjct: 88  VPAEVLYRTRRDNINHQVYNHRSEEAMLCVGEQ-QDRSFIQPDSFQELQRSGMQFIHLGV 146

Query: 445 MQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVPDILMTIRDF 624
           +QVR+QILHR +EGTM L++FRDNRWQGD SI A  EVDL  G+Q++YV+PD +MTI DF
Sbjct: 147 LQVRIQILHRADEGTMALVVFRDNRWQGDQSIFAIAEVDLTRGSQIVYVIPDTMMTIGDF 206

Query: 625 FQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDFLTSRGIRAL 804
           ++N+QISIQT GYE+W+ GEAN+LI++G+ GRLSNTPN+ FAY+IS VTD+L SRG++AL
Sbjct: 207 YRNVQISIQTTGYESWQNGEANLLITRGMTGRLSNTPNVGFAYRISHVTDYLASRGVQAL 266

Query: 805 PGRRYD 822
           PGRRY+
Sbjct: 267 PGRRYN 272


>gb|AER00538.1| ORF III [Citrus yellow mosaic virus]
          Length = 1982

 Score =  317 bits (812), Expect = 2e-95
 Identities = 154/254 (60%), Positives = 197/254 (77%), Gaps = 3/254 (1%)
 Frame = +1

Query: 67  PIDTPTLEEG---PSFEDQIRRYSQNQQRLFNARRFIRRLTGERYHQTLEQYISPEEQLQ 237
           P  T  +EE    P ++DQIR Y Q QQR  N  R   +L G  Y+QTLEQ + PE  LQ
Sbjct: 15  PATTSRVEERDNTPLYDDQIRDYRQWQQRRHNMGRRWNQLIGRPYNQTLEQVVDPEVALQ 74

Query: 238 LSLRERISLVPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRS 417
           LS++ER  LVPAEVLYRSR DD +H+VY+HRSEEA+ CVD   +DR ++Q ES  QL RS
Sbjct: 75  LSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRS 134

Query: 418 NMQFIYIGLMQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVP 597
            M FI++G++QVR+QILHR++EGT  L++FRDNRWQGD SI ATME+DL  G Q++Y++P
Sbjct: 135 GMPFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIP 194

Query: 598 DILMTIRDFFQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDF 777
           D +MT+RDF +N+QISI T+GY NW+ GEAN+L+++GIVGRLSNTPN+ FAYQI +VTD+
Sbjct: 195 DTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVTDY 254

Query: 778 LTSRGIRALPGRRY 819
           L S GI+ALPGRRY
Sbjct: 255 LVSHGIQALPGRRY 268


>gb|ANK58542.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  317 bits (812), Expect = 2e-95
 Identities = 154/245 (62%), Positives = 196/245 (80%), Gaps = 4/245 (1%)
 Frame = +1

Query: 97  PSFEDQIRRYSQNQQRLFNARRFIRR----LTGERYHQTLEQYISPEEQLQLSLRERISL 264
           P FEDQIR Y +NQ+R F A + +RR    + G RY+QTLEQ + PE +L  S++ER +L
Sbjct: 27  PLFEDQIRDYRRNQRRRFVAEQAVRRTMGRMRGRRYNQTLEQIVDPEVELNQSMQERANL 86

Query: 265 VPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRSNMQFIYIGL 444
           VPAEVLYRSR D+ NH++Y HRSEEA+ CV  Q  DR  +Q  SF +LQRS MQFI++G+
Sbjct: 87  VPAEVLYRSRRDNINHQIYNHRSEEAMLCVGEQ-QDRMFIQPNSFQELQRSGMQFIHLGV 145

Query: 445 MQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVPDILMTIRDF 624
           +QVRLQILHR +EGTM L++FRDNRWQGD SI A  EVDL  G+Q++YV+PD +MTI DF
Sbjct: 146 LQVRLQILHRADEGTMALVVFRDNRWQGDQSIFAISEVDLTRGSQIVYVIPDTMMTIGDF 205

Query: 625 FQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDFLTSRGIRAL 804
           ++N+QISIQT GYENW+ GEAN+LI++G+ GRLSNTPN+ FAY+IS VTD+L SRG++AL
Sbjct: 206 YRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRISHVTDYLASRGVQAL 265

Query: 805 PGRRY 819
           PGRRY
Sbjct: 266 PGRRY 270


>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1968

 Score =  316 bits (810), Expect = 4e-95
 Identities = 152/254 (59%), Positives = 198/254 (77%), Gaps = 3/254 (1%)
 Frame = +1

Query: 67  PIDTPTLEEG---PSFEDQIRRYSQNQQRLFNARRFIRRLTGERYHQTLEQYISPEEQLQ 237
           P+ T  ++E    P ++DQIR Y Q Q+R  N  R   +L G  Y+QTLEQ + PE  LQ
Sbjct: 15  PVTTSRVDERDNTPLYDDQIRDYRQWQRRRHNMGRRWNQLIGRPYNQTLEQVVDPEVALQ 74

Query: 238 LSLRERISLVPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRS 417
           LS++ER  LVPAEVLYRSR DD +H+VY+HRSEEA+ CVD   +DR ++Q ES  QL RS
Sbjct: 75  LSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRS 134

Query: 418 NMQFIYIGLMQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVP 597
            M FI++G++QVR+QILHR++EGT  L++FRDNRWQGD SI ATME+DL  G Q++Y++P
Sbjct: 135 GMSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIP 194

Query: 598 DILMTIRDFFQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDF 777
           D +MT+RDF +N+QISI T+GY NW+ GEAN+L+++GIVGRLSNTPN+ FAYQI +VTD+
Sbjct: 195 DTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVTDY 254

Query: 778 LTSRGIRALPGRRY 819
           L S GI+ALPGRRY
Sbjct: 255 LVSHGIQALPGRRY 268


>gb|AER00544.1| ORF III [Citrus yellow mosaic virus]
          Length = 1976

 Score =  315 bits (806), Expect = 1e-94
 Identities = 153/254 (60%), Positives = 196/254 (77%), Gaps = 3/254 (1%)
 Frame = +1

Query: 67  PIDTPTLEEG---PSFEDQIRRYSQNQQRLFNARRFIRRLTGERYHQTLEQYISPEEQLQ 237
           P  T  +EE    P ++DQIR Y Q QQR  N  R   +L G  Y+QTLEQ + PE  LQ
Sbjct: 15  PATTSRVEERDNTPLYDDQIRDYRQWQQRRHNMGRRWNQLIGRPYNQTLEQVVDPEVALQ 74

Query: 238 LSLRERISLVPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRS 417
           LS++ER  LVPAEVLYRSR DD +H+VY+HRSEEA+ CVD   +DR ++Q ES  QL RS
Sbjct: 75  LSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRS 134

Query: 418 NMQFIYIGLMQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVP 597
            M FI++G++QVR+ ILHR++EGT  L++FRDNRWQGD SI ATME+DL  G Q++Y++P
Sbjct: 135 GMPFIHMGIVQVRIPILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIP 194

Query: 598 DILMTIRDFFQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDF 777
           D +MT+RDF +N+QISI T+GY NW+ GEAN+L+++GIVGRLSNTPN+ FAYQI +VTD+
Sbjct: 195 DTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVTDY 254

Query: 778 LTSRGIRALPGRRY 819
           L S GI+ALPGRRY
Sbjct: 255 LVSHGIQALPGRRY 268


>gb|ASG91853.1| polyprotein [Cacao swollen shoot virus]
          Length = 1847

 Score =  315 bits (806), Expect = 1e-94
 Identities = 153/260 (58%), Positives = 199/260 (76%), Gaps = 8/260 (3%)
 Frame = +1

Query: 61  PYPIDTPTLEE----GPSFEDQIRRYSQNQQRLFNARRFIRRL----TGERYHQTLEQYI 216
           P P  T T+ E    GP +EDQIR Y ++Q+R+FN RR  RRL    TG RY +TLEQ I
Sbjct: 9   PVPSVTSTISEQNREGPLYEDQIRDYRRSQRRIFNLRRNARRLRRSMTGSRYQETLEQEI 68

Query: 217 SPEEQLQLSLRERISLVPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNES 396
            P+  L+LS++ER  LVPAEVLYRSR D  +HRVY HRSEE+V CV    +DR+ +Q ES
Sbjct: 69  DPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGGNQVDRAFIQPES 128

Query: 397 FAQLQRSNMQFIYIGLMQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGN 576
             QLQR+ M FI+IG++QVR+QILHR+ EGTM L++FRDNRW GD SI A ME+DL  G+
Sbjct: 129 LEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWSGDQSIFAQMEIDLTKGS 188

Query: 577 QLIYVVPDILMTIRDFFQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQ 756
           QL++V+PD +MTI DF +N+Q+SI TRGYENW+ GEAN+LI++G+ GRLSNTPN+ FAYQ
Sbjct: 189 QLVFVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRGMTGRLSNTPNVAFAYQ 248

Query: 757 ISSVTDFLTSRGIRALPGRR 816
           I+S TD+L S G++A+ G++
Sbjct: 249 IASATDYLASHGVKAIAGKK 268


>ref|NP_569153.1| unknown [Citrus yellow mosaic virus]
 gb|AAL18495.1|AF347695_3 unknown [Citrus yellow mosaic virus]
          Length = 1983

 Score =  314 bits (805), Expect = 2e-94
 Identities = 152/254 (59%), Positives = 197/254 (77%), Gaps = 3/254 (1%)
 Frame = +1

Query: 67  PIDTPTLEEG---PSFEDQIRRYSQNQQRLFNARRFIRRLTGERYHQTLEQYISPEEQLQ 237
           P  T  +EE    P ++DQIR Y Q Q+R  N  R   +L G  Y+QTLEQ + PE  LQ
Sbjct: 15  PATTARVEERDNTPLYDDQIRDYRQWQRRRHNMGRRWNQLIGRPYNQTLEQVVDPEVALQ 74

Query: 238 LSLRERISLVPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRS 417
           LS++ER  LVPAEVLYRSR DD +H+VY+H+SEEA+ CVD   +DR ++Q ES  QL RS
Sbjct: 75  LSMQERARLVPAEVLYRSRTDDRHHQVYIHKSEEAILCVDGDQVDRLLIQPESAEQLSRS 134

Query: 418 NMQFIYIGLMQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVP 597
            M FI++G++QVR+QILHR++EGT  L++FRDNRWQGD SI ATME+DL  G Q++Y++P
Sbjct: 135 GMSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIP 194

Query: 598 DILMTIRDFFQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDF 777
           D +MT+RDF +N+QISI T+GY NW+ GEAN+L+++GIVGRLSNTPN+ FAYQI +VTD+
Sbjct: 195 DTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVTDY 254

Query: 778 LTSRGIRALPGRRY 819
           L S GI+ALPGRRY
Sbjct: 255 LVSHGIQALPGRRY 268


>gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1979

 Score =  314 bits (805), Expect = 2e-94
 Identities = 153/254 (60%), Positives = 196/254 (77%), Gaps = 3/254 (1%)
 Frame = +1

Query: 67  PIDTPTLEEG---PSFEDQIRRYSQNQQRLFNARRFIRRLTGERYHQTLEQYISPEEQLQ 237
           P  T  +EE    P ++DQIR Y Q Q+R  N  R   +L G  Y+QTLEQ + PE  LQ
Sbjct: 15  PATTSRVEERDNTPLYDDQIRDYRQWQRRRHNMGRRWNQLIGRPYNQTLEQVVDPEVALQ 74

Query: 238 LSLRERISLVPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRS 417
           LS++ER  LVPAEVLYRSR DD +H+VY+HRSEEA+ CVD   +DR ++Q ES  QL RS
Sbjct: 75  LSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRS 134

Query: 418 NMQFIYIGLMQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVP 597
            M FI +G++QVR+QILHR++EGT  L++FRDNRWQGD SI ATME+DL  G Q++Y++P
Sbjct: 135 GMSFINMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIP 194

Query: 598 DILMTIRDFFQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDF 777
           D +MT+RDF +N+QISI T+GY NW+ GEAN+L+++GIVGRLSNTPN+ FAYQI +VTD+
Sbjct: 195 DTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQNVTDY 254

Query: 778 LTSRGIRALPGRRY 819
           L S GI+ALPGRRY
Sbjct: 255 LVSHGIQALPGRRY 268


>gb|ATZ69482.1| ORF3 polyprotein [Cacao swollen shoot Ghana M virus]
          Length = 1831

 Score =  314 bits (805), Expect = 2e-94
 Identities = 151/248 (60%), Positives = 194/248 (78%), Gaps = 4/248 (1%)
 Frame = +1

Query: 91  EGPSFEDQIRRYSQNQQRLFNARRFIRRLT----GERYHQTLEQYISPEEQLQLSLRERI 258
           EGP FEDQ+R Y +NQ+R+FN RR  RRL     G RY  TLEQ I P+  L+LS++ER 
Sbjct: 21  EGPLFEDQVRDYRRNQRRIFNLRRNARRLRRHMMGTRYQDTLEQEIDPQTTLRLSMQERA 80

Query: 259 SLVPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRSNMQFIYI 438
            LVPAEVLYRSR D  +HRVY HRSEE++ CV+   IDR+ +Q ES  QLQR+ M F++I
Sbjct: 81  RLVPAEVLYRSRRDTVHHRVYTHRSEESILCVNGNQIDRAFIQPESLEQLQRTGMAFVHI 140

Query: 439 GLMQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVPDILMTIR 618
           G++QVR+QILHR+ EGTM LI+FRDNRW GD SI A MEVDL  G+QL++V+PD +MTI 
Sbjct: 141 GILQVRVQILHRQEEGTMALIVFRDNRWSGDQSIFAQMEVDLTKGSQLVFVIPDTMMTIG 200

Query: 619 DFFQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDFLTSRGIR 798
           DF +NIQ+SI TRGY+NW+ GEAN+LI++ + GRLSNTPN+ FAYQI+S TD+L S G+R
Sbjct: 201 DFARNIQLSILTRGYDNWQNGEANLLITRSMTGRLSNTPNVAFAYQIASATDYLASHGVR 260

Query: 799 ALPGRRYD 822
           A+ G+++D
Sbjct: 261 AIAGKKFD 268


>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
 gb|AHI90954.1| polyprotein [Hibiscus bacilliform virus GD1]
          Length = 1892

 Score =  314 bits (805), Expect = 2e-94
 Identities = 154/249 (61%), Positives = 194/249 (77%), Gaps = 5/249 (2%)
 Frame = +1

Query: 91  EGPSFEDQIRRYSQNQQRLFNARRFIRRL----TGER-YHQTLEQYISPEEQLQLSLRER 255
           E P FEDQIR Y  +Q+R +  +R +RRL    TG + Y +TLEQ + P+  LQ+S++ER
Sbjct: 25  ETPLFEDQIRDYRNSQRRAYTTQRAVRRLRRRITGRQPYQETLEQEVDPQADLQMSMQER 84

Query: 256 ISLVPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRSNMQFIY 435
             LVPAEVLYRSR D  +HRVY HRSEEA+ C D   +DR+ +Q ES   LQR+ + FI+
Sbjct: 85  ARLVPAEVLYRSRRDTIHHRVYSHRSEEAILCTDGNQVDRTFIQPESMEALQRTGISFIH 144

Query: 436 IGLMQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVPDILMTI 615
           IG+MQVRLQILHR+NEGTM L++FRD RW GD SI ATMEVDL  G Q+IYVVPD +MTI
Sbjct: 145 IGIMQVRLQILHRQNEGTMALVVFRDTRWNGDQSIFATMEVDLTEGRQIIYVVPDTMMTI 204

Query: 616 RDFFQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDFLTSRGI 795
            DF +NIQISI TRGY NW+ GEAN+L+++GIVGRLSNTPN+ FAY+I +VTD+LTS+G+
Sbjct: 205 GDFARNIQISILTRGYSNWQNGEANLLVTRGIVGRLSNTPNVAFAYEIGNVTDYLTSQGV 264

Query: 796 RALPGRRYD 822
           +A+ GRRYD
Sbjct: 265 QAIAGRRYD 273


>gb|ATZ69445.1| ORF3 polyprotein [Cacao swollen shoot Togo A virus]
          Length = 1862

 Score =  314 bits (804), Expect = 3e-94
 Identities = 156/261 (59%), Positives = 199/261 (76%), Gaps = 9/261 (3%)
 Frame = +1

Query: 61  PYPIDTPTL-----EEGPSFEDQIRRYSQNQQRLFNARRFIRRL----TGERYHQTLEQY 213
           PY I + T       EGP +EDQIR Y + Q+R+FN RR  RRL    TG RY +TLEQ 
Sbjct: 7   PYTIPSVTTTSEQGREGPLYEDQIRDYRRGQRRIFNLRRRARRLRRSMTGSRYQETLEQE 66

Query: 214 ISPEEQLQLSLRERISLVPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNE 393
           I P+  L+LS++ER  LVPAEVLYRSR D  +HRVY HRSEE+V CV NQ IDR+ +Q E
Sbjct: 67  IDPQTTLRLSMQERARLVPAEVLYRSRRDTVHHRVYTHRSEESVLCVGNQ-IDRAFIQPE 125

Query: 394 SFAQLQRSNMQFIYIGLMQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIG 573
           S  QLQR+ M FI+IG++QVR+QILHR+ EGTM L++FRDNRW GD SI A ME+DL  G
Sbjct: 126 SLEQLQRTGMSFIHIGILQVRIQILHRQEEGTMALVVFRDNRWTGDQSIFAQMEIDLTKG 185

Query: 574 NQLIYVVPDILMTIRDFFQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAY 753
           +QL++V+PD +MTI DF +N+Q+SI TRGYENW+ GEAN+LI++ + GRLSNTPN+ FAY
Sbjct: 186 SQLVFVIPDTMMTIGDFARNVQLSILTRGYENWQNGEANLLITRSMTGRLSNTPNVAFAY 245

Query: 754 QISSVTDFLTSRGIRALPGRR 816
           QISS TD+L S G++A+ G++
Sbjct: 246 QISSATDYLASHGVKAIAGKK 266


>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1967

 Score =  313 bits (802), Expect = 5e-94
 Identities = 152/254 (59%), Positives = 197/254 (77%), Gaps = 3/254 (1%)
 Frame = +1

Query: 67  PIDTPTLEEG---PSFEDQIRRYSQNQQRLFNARRFIRRLTGERYHQTLEQYISPEEQLQ 237
           P  T  +EE    P ++DQIR Y Q Q+R  N  R   +L G  Y+QTLEQ + PE  LQ
Sbjct: 15  PATTSRVEERNNTPLYDDQIRDYRQWQRRRHNMGRRWNQLMGRPYNQTLEQVVDPEVALQ 74

Query: 238 LSLRERISLVPAEVLYRSRHDDENHRVYLHRSEEAVCCVDNQ*IDRSIVQNESFAQLQRS 417
           LS++ER  LVPAEVLYRSR+DD +H+VY+HRSEEA+ CVD   +DR ++Q ES  QL RS
Sbjct: 75  LSMQERARLVPAEVLYRSRNDDRHHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRS 134

Query: 418 NMQFIYIGLMQVRLQILHRRNEGTMTLIIFRDNRWQGD*SILATMEVDLAIGNQLIYVVP 597
            M FI++G++QVR+QILHR++EGT  L++FRDNRWQGD SI ATME+DL  G Q++Y++P
Sbjct: 135 GMSFIHMGIVQVRIQILHRQHEGTTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIP 194

Query: 598 DILMTIRDFFQNIQISIQTRGYENWRAGEANILISQGIVGRLSNTPNINFAYQISSVTDF 777
           D +MT+RDF +N+QISI T+GY NW+ GEAN+L+++GIVGRLSNTP + FAYQI +VTD+
Sbjct: 195 DTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPIVAFAYQIQNVTDY 254

Query: 778 LTSRGIRALPGRRY 819
           L S GI+ALPGRRY
Sbjct: 255 LVSHGIQALPGRRY 268