BLASTX nr result
ID: Cheilocostus21_contig00058053
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00058053
(700 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP51533.1| Copia protein [Cajanus cajan] 53 5e-07
gb|KYP72049.1| Retrovirus-related Pol polyprotein from transposo... 50 3e-06
gb|KYP52073.1| Retrovirus-related Pol polyprotein from transposo... 49 3e-06
gb|KYP51683.1| Copia protein, partial [Cajanus cajan] 49 7e-06
gb|KYP32020.1| Retrovirus-related Pol polyprotein from transposo... 47 9e-06
>gb|KYP51533.1| Copia protein [Cajanus cajan]
Length = 235
Score = 53.1 bits (126), Expect(3) = 5e-07
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = -1
Query: 268 RNKIVA*SSVEIKYRAMAC-TNMATHPYSRFQFL*GSYDHA----CNNKVVISIAGNIIF 104
+ +VA SSVE +YRAMA T + L DH C+N+V + I N++F
Sbjct: 131 KQNVVARSSVEAEYRAMALITCEFVWIKQLIRELRFCEDHPMRLYCDNQVALHITSNLVF 190
Query: 103 DERIQHIGMHYHFIQYAIKSKRIITSFAN 17
ER +HI + HF++ + SK IIT F N
Sbjct: 191 HERTKHIEVDCHFVREKLLSKEIITEFVN 219
Score = 24.6 bits (52), Expect(3) = 5e-07
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 332 DNRQCT*FYTLGSENLISWKNKK*N 258
D T +Y N+ISWK+KK N
Sbjct: 109 DRCSTTRYYVFLGGNIISWKSKKQN 133
Score = 23.9 bits (50), Expect(3) = 5e-07
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Frame = -2
Query: 468 LFFFRITR------TRVVKEYVQSPKQIHQEVVL*ILCYI 367
L + ITR +V +++Q+P H VVL IL YI
Sbjct: 38 LIYLTITRPDLSFAVGIVSQFMQAPHIDHWNVVLRILRYI 77
>gb|KYP72049.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 422
Score = 50.1 bits (118), Expect(3) = 3e-06
Identities = 33/89 (37%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Frame = -1
Query: 268 RNKIVA*SSVEIKYRAMAC-TNMATHPYSRFQFL*GSYDHA----CNNKVVISIAGNIIF 104
+ +VA SS E +YRAMA T + L DH C+N+ + IA N +F
Sbjct: 294 KQNVVARSSAEAEYRAMALITCELVWIKQLIRELRFCEDHPMRLYCDNQAALHIASNPVF 353
Query: 103 DERIQHIGMHYHFIQYAIKSKRIITSFAN 17
ER +HI + HF++ + SK IIT F N
Sbjct: 354 HERTKHIEVDCHFVREKLLSKEIITEFVN 382
Score = 25.0 bits (53), Expect(3) = 3e-06
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 332 DNRQCT*FYTLGSENLISWKNKK*N 258
D R T + NLISWK+KK N
Sbjct: 272 DRRSTTGYCVFLGGNLISWKSKKQN 296
Score = 23.9 bits (50), Expect(3) = 3e-06
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Frame = -2
Query: 468 LFFFRITR------TRVVKEYVQSPKQIHQEVVL*ILCYI 367
L + ITR +V +++Q+P H VVL IL YI
Sbjct: 201 LIYLTITRPDLSFAVGIVSQFMQAPHIDHWNVVLHILRYI 240
>gb|KYP52073.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 388
Score = 49.3 bits (116), Expect(3) = 3e-06
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Frame = -1
Query: 268 RNKIVA*SSVEIKYRAMA------------------CTNMATHPYSRFQFL*GSYDHACN 143
+ +VA SS E +YRAMA C N HP + C+
Sbjct: 266 KQNVVARSSAEAEYRAMALITCEFIWIKQLIQELRFCEN---HPMKLY----------CD 312
Query: 142 NKVVISIAGNIIFDERIQHIGMHYHFIQYAIKSKRIITSFAN 17
N+ + IA N +F ER +HI + HF++ + SK IIT F N
Sbjct: 313 NQAALHIASNPVFHERTKHIEVDCHFVREKLLSKEIITGFVN 354
Score = 25.0 bits (53), Expect(3) = 3e-06
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 332 DNRQCT*FYTLGSENLISWKNKK*N 258
D R T + NLISWK+KK N
Sbjct: 244 DRRSTTGYCVFLGGNLISWKSKKQN 268
Score = 24.3 bits (51), Expect(3) = 3e-06
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Frame = -2
Query: 468 LFFFRITR------TRVVKEYVQSPKQIHQEVVL*ILCYI 367
L + ITR VV +++Q+P H VVL IL YI
Sbjct: 173 LIYLTITRPDLSFAVGVVSQFMQAPHIDHWNVVLRILRYI 212
>gb|KYP51683.1| Copia protein, partial [Cajanus cajan]
Length = 397
Score = 48.5 bits (114), Expect(3) = 7e-06
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Frame = -1
Query: 268 RNKIVA*SSVEIKYRAMA---CTNM-ATHPYSRFQFL*GS-YDHACNNKVVISIAGNIIF 104
+ +VA SS E +YRAMA C M +F G C+N+V + IA N +F
Sbjct: 275 KQNVVARSSAEAEYRAMALITCELMWIKQLLQELKFCEGHPMKLYCDNQVALHIASNPVF 334
Query: 103 DERIQHIGMHYHFIQYAIKSKRIITSF 23
ER +HI + HF++ + SK I+T F
Sbjct: 335 HERTKHIEVDCHFVREKLLSKEIVTKF 361
Score = 25.0 bits (53), Expect(3) = 7e-06
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 332 DNRQCT*FYTLGSENLISWKNKK*N 258
D R T + NLISWK+KK N
Sbjct: 253 DRRSTTGYCVFLGGNLISWKSKKQN 277
Score = 23.9 bits (50), Expect(3) = 7e-06
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Frame = -2
Query: 468 LFFFRITR------TRVVKEYVQSPKQIHQEVVL*ILCYI 367
L + ITR +V +++Q+P H VVL IL YI
Sbjct: 182 LIYLTITRPDLCFAVGIVSQFMQAPHINHWNVVLRILRYI 221
>gb|KYP32020.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 388
Score = 47.4 bits (111), Expect(3) = 9e-06
Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Frame = -1
Query: 268 RNKIVA*SSVEIKYRAMA------------------CTNMATHPYSRFQFL*GSYDHACN 143
+ +VA SS E +YRAMA C N HP + C+
Sbjct: 266 KQNVVARSSAEAEYRAMALITCEFIWIKQLIQELRFCEN---HPMKLY----------CD 312
Query: 142 NKVVISIAGNIIFDERIQHIGMHYHFIQYAIKSKRIITSFAN 17
++ + IA N +F ER +HI + HF++ + SK IIT F N
Sbjct: 313 DQAALHIASNPVFHERTKHIEVDCHFVREKLLSKEIITEFVN 354
Score = 25.4 bits (54), Expect(3) = 9e-06
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -3
Query: 332 DNRQCT*FYTLGSENLISWKNKK*N 258
D R T + NLISWK+KK N
Sbjct: 244 DRRSATGYCVFLGGNLISWKSKKQN 268
Score = 24.3 bits (51), Expect(3) = 9e-06
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Frame = -2
Query: 468 LFFFRITR------TRVVKEYVQSPKQIHQEVVL*ILCYI 367
L + ITR VV +++Q+P H VVL IL YI
Sbjct: 173 LIYLTITRPDLSFAVGVVSQFMQAPHIDHWNVVLRILRYI 212