BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00057377
         (1135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]                   381   e-116
gb|ANK58542.1| polyprotein [Fig badnavirus 1]                         366   e-111
gb|ANK58539.1| polyprotein [Fig badnavirus 1]                         365   e-110
gb|ANK58548.1| polyprotein [Fig badnavirus 1]                         364   e-110
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] >gi|333493962...   364   e-110
ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discolor...   360   e-109
gb|ANK58536.1| polyprotein [Fig badnavirus 1]                         359   e-108
gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration...   358   e-108
gb|ANK58545.1| polyprotein [Fig badnavirus 1]                         357   e-107
gb|ACH86211.1| unknown [Citrus yellow mosaic virus]                   331   4e-99
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]               332   6e-99
ref|NP_569153.1| unknown [Citrus yellow mosaic virus] >gi|164169...   329   7e-98
gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]               328   1e-97
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]               327   2e-97
gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]               326   6e-97
gb|AER00538.1| ORF III [Citrus yellow mosaic virus]                   324   3e-96
gb|AER00544.1| ORF III [Citrus yellow mosaic virus]                   321   3e-95
gb|ATZ69482.1| ORF3 polyprotein [Cacao swollen shoot Ghana M virus]   319   2e-94
gb|ASG91848.1| polyprotein [Cacao swollen shoot virus]                314   1e-92
gb|ATZ69449.1| ORF3 polyprotein [Cacao swollen shoot virus]           314   1e-92

>gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]
          Length = 1846

 Score =  381 bits (978), Expect = e-116
 Identities = 197/384 (51%), Positives = 266/384 (69%), Gaps = 17/384 (4%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH++H RIEKRKHLIRN++CKCYLCG+EGHFAREC ++ ++ KRVA+FEQL++P+D+DI+
Sbjct: 775  PHESHARIEKRKHLIRNKRCKCYLCGEEGHFARECPNDRKSAKRVAMFEQLELPEDYDIV 834

Query: 955  SVHEGEDQSDAIFSVSENEG--EEGSAALKACIQTEYIYMLGEIDGGYRPQVKLPEHQLN 782
            SV+EGED SDAI+S+SE E   E+   +LK+ + TE ++MLGE DGG+RP++K+ + QL 
Sbjct: 835  SVNEGEDNSDAIYSLSEGEDGMEDLGQSLKSLMITEKMFMLGEEDGGWRPKIKVSDEQLA 894

Query: 781  CLHK*QLNSFVEA-KYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXXXX 605
            C HK + N  ++   Y KC+ C   T+ RARIHC  C+ T+CN+CGPYY           
Sbjct: 895  CQHKWEHNGEIQQFVYLKCLGCQCPTMKRARIHCPKCKATACNLCGPYYFKKEVPVAPPP 954

Query: 604  XXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLG-----KSLQEDFEKLK 440
                  + LI EQ+ +I WCE EI RL+ E  Y K +L E  L      + LQ+D+++L 
Sbjct: 955  PTPMNPRKLIMEQQNHIQWCEVEIERLEKEVSYWK-KLYENALRATGVIEDLQKDYKELL 1013

Query: 439  PMGETSQKEHTE--------EYANILLQESILKVS-QEGQSGPRLVKNMLYNMKIELDIP 287
               E  +K   +        E AN L +E + KV+ QE Q   ++V+NMLYN  I +DIP
Sbjct: 1014 SEDEEKRKRRAKGVMIIEEGEQANFLQEEKVNKVAVQEEQRPKKMVRNMLYNFIISIDIP 1073

Query: 286  GVPRFSVRAILDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIG 107
            G+ +FSV+AILDTGATTCCID+ SIP EA+E N  LV+FSG+NS  T++ KLKGGRM IG
Sbjct: 1074 GIDKFSVKAILDTGATTCCIDQESIPKEALEENTYLVRFSGVNSTMTANKKLKGGRMFIG 1133

Query: 106  ENNFRIPYTYSFEMTLGDGIQMIL 35
            EN FRIPYTYSF + + DG+QMI+
Sbjct: 1134 ENMFRIPYTYSFPIKMEDGVQMIV 1157


>gb|ANK58542.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  366 bits (939), Expect = e-111
 Identities = 190/374 (50%), Positives = 252/374 (67%), Gaps = 7/374 (1%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH++H RIEKRKHL+RN++CKC+LCG+EGHFAREC ++ R+ KR+A+FE L++P+D DI+
Sbjct: 794  PHESHARIEKRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIV 853

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACIQT-EYIYMLGEIDGGYRPQVKLPEHQLNC 779
            SV EGED SDAI+S+S  EGE+G+  L+  +QT E + MLGEIDGGYRPQ+KLPE Q+NC
Sbjct: 854  SVEEGEDMSDAIYSIS--EGEDGADELQRSLQTLEIVLMLGEIDGGYRPQIKLPEEQMNC 911

Query: 778  LHK*QLNS--FVEAKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXXXX 605
            +H    N   FV+ +   C  C R+++ RARIHC  C +T+CN+CGPYY           
Sbjct: 912  VHNWIHNGDIFVQ-RAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAP 970

Query: 604  XXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKPMGET 425
                  + +IQEQ  YI WCE EI RL  E K+ K     L + KSL++D+E+LK   + 
Sbjct: 971  STPINPRRIIQEQHNYIGWCEVEIERLNKEVKHYKGLYEALLMEKSLRKDYEELKEGDKE 1030

Query: 424  SQK----EHTEEYANILLQESILKVSQEGQSGPRLVKNMLYNMKIELDIPGVPRFSVRAI 257
             +K    +  EE   +   E IL    E +   + VKNMLYN  IE +IP V RF VRAI
Sbjct: 1031 RRKGIMIQEPEEVNYLGEDEKILAAGTEEKK--KFVKNMLYNFDIEFEIPDVSRFRVRAI 1088

Query: 256  LDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRIPYTY 77
            LDTGA+TCCI+E ++P EA+E +   VQ +G+NS Q +  KLK GRM IG N FRIP+TY
Sbjct: 1089 LDTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMNTFRIPFTY 1148

Query: 76   SFEMTLGDGIQMIL 35
            S  + +GD IQMI+
Sbjct: 1149 SLPLVIGDNIQMIV 1162


>gb|ANK58539.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  365 bits (937), Expect = e-110
 Identities = 190/374 (50%), Positives = 252/374 (67%), Gaps = 7/374 (1%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH++H RIEKRKHL+RN++CKC+LCG+EGHFAREC ++ R+ KR+A+FE L++P+D DI+
Sbjct: 794  PHESHARIEKRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIV 853

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACIQT-EYIYMLGEIDGGYRPQVKLPEHQLNC 779
            SV EGED SDAI+S+S  EGE+G+  L+  +QT E + MLGEIDGGYRPQ+KLPE Q+NC
Sbjct: 854  SVEEGEDMSDAIYSIS--EGEDGADELQRSLQTLEIVLMLGEIDGGYRPQIKLPEEQMNC 911

Query: 778  LHK*QLNS--FVEAKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXXXX 605
            +H    N   FV+ +   C  C R+++ RARIHC  C +T+CN+CGPYY           
Sbjct: 912  VHNWIHNGDIFVQ-RAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAP 970

Query: 604  XXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKPMGET 425
                  + +IQEQ  YI WCE EI RL  E K+ K     L + KSL++D+E+LK   + 
Sbjct: 971  STPINPRRIIQEQHNYIGWCEVEIERLNKEVKHYKGLYEALLMEKSLRKDYEELKEGDKE 1030

Query: 424  SQK----EHTEEYANILLQESILKVSQEGQSGPRLVKNMLYNMKIELDIPGVPRFSVRAI 257
             +K    +  EE   +   E IL    E +   + VKNMLYN  IE +IP V RF VRAI
Sbjct: 1031 RRKGILIQEPEEVNYLGEDEKILAAGTEEKK--KFVKNMLYNFDIESEIPDVSRFRVRAI 1088

Query: 256  LDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRIPYTY 77
            LDTGA+TCCI+E ++P EA+E +   VQ +G+NS Q +  KLK GRM IG N FRIP+TY
Sbjct: 1089 LDTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMNTFRIPFTY 1148

Query: 76   SFEMTLGDGIQMIL 35
            S  + +GD IQMI+
Sbjct: 1149 SLPLVIGDNIQMIV 1162


>gb|ANK58548.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  364 bits (935), Expect = e-110
 Identities = 189/374 (50%), Positives = 252/374 (67%), Gaps = 7/374 (1%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH++H RIEKRKHL+RN++CKC+LCG+EGHFAR+C ++ R+ KR+A+FE L++P+D DI+
Sbjct: 794  PHESHARIEKRKHLVRNKRCKCFLCGQEGHFARKCPNDKRSSKRMAMFENLEIPEDCDIV 853

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACIQT-EYIYMLGEIDGGYRPQVKLPEHQLNC 779
            SV EGED SDAI+S+S  EGE+G+  L+  +QT E + MLGEIDGGYRPQ+KLPE Q+NC
Sbjct: 854  SVEEGEDMSDAIYSIS--EGEDGADELQRSLQTLEIVLMLGEIDGGYRPQIKLPEEQMNC 911

Query: 778  LHK*QLNS--FVEAKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXXXX 605
            +H    N   FV+ +   C  C R+++ RARIHC  C +T+CN+CGPYY           
Sbjct: 912  VHNWIHNGDIFVQ-RAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAP 970

Query: 604  XXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKPMGET 425
                  + +IQEQ  YI WCE EI RL  E K+ K     L + KSL++D+E+LK   + 
Sbjct: 971  STPINPRRIIQEQHNYIGWCEVEIERLNKEVKHYKGLYEALLMEKSLRKDYEELKEGDKE 1030

Query: 424  SQK----EHTEEYANILLQESILKVSQEGQSGPRLVKNMLYNMKIELDIPGVPRFSVRAI 257
             +K    +  EE   +   E IL    E +   + VKNMLYN  IE +IP V RF VRAI
Sbjct: 1031 RRKGIMIQEPEEVNYLGEDEKILAAGTEEKK--KFVKNMLYNFDIEFEIPDVSRFRVRAI 1088

Query: 256  LDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRIPYTY 77
            LDTGA+TCCI+E ++P EA+E +   VQ +G+NS Q +  KLK GRM IG N FRIP+TY
Sbjct: 1089 LDTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMNTFRIPFTY 1148

Query: 76   SFEMTLGDGIQMIL 35
            S  + +GD IQMI+
Sbjct: 1149 SLPLVIGDNIQMIV 1162


>ref|YP_006273075.1| polyprotein [Fig badnavirus 1]
 gb|AEF56561.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  364 bits (935), Expect = e-110
 Identities = 189/374 (50%), Positives = 252/374 (67%), Gaps = 7/374 (1%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH++H RIEKRKHL+RN++CKC+LCG+EGHFAR+C ++ R+ KR+A+FE L++P+D DI+
Sbjct: 794  PHESHARIEKRKHLVRNKRCKCFLCGQEGHFARKCPNDKRSSKRMAMFENLEIPEDCDIV 853

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACIQT-EYIYMLGEIDGGYRPQVKLPEHQLNC 779
            SV EGED SDAI+S+S  EGE+G+  L+  +QT E + MLGEIDGGYRPQ+KLPE Q+NC
Sbjct: 854  SVEEGEDMSDAIYSIS--EGEDGADELQKSLQTLEIVLMLGEIDGGYRPQIKLPEEQMNC 911

Query: 778  LHK*QLNS--FVEAKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXXXX 605
            +H    N   FV+ +   C  C R+++ RARIHC  C +T+CN+CGPYY           
Sbjct: 912  VHNWIHNGDIFVQ-RAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAP 970

Query: 604  XXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKPMGET 425
                  + +IQEQ  YI WCE EI RL  E K+ K     L + KSL++D+E+LK   + 
Sbjct: 971  STPINPRRIIQEQHNYIGWCEVEIERLNKEVKHYKGLYEALLMEKSLRKDYEELKEGDKE 1030

Query: 424  SQK----EHTEEYANILLQESILKVSQEGQSGPRLVKNMLYNMKIELDIPGVPRFSVRAI 257
             +K    +  EE   +   E IL    E +   + VKNMLYN  IE +IP V RF VRAI
Sbjct: 1031 RRKGIMIQEPEEVNYLGEDEKILAAGTEEKK--KFVKNMLYNFDIEFEIPDVSRFRVRAI 1088

Query: 256  LDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRIPYTY 77
            LDTGA+TCCI+E ++P EA+E +   VQ +G+NS Q +  KLK GRM IG N FRIP+TY
Sbjct: 1089 LDTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMNTFRIPFTY 1148

Query: 76   SFEMTLGDGIQMIL 35
            S  + +GD IQMI+
Sbjct: 1149 SLPLVIGDNIQMIV 1162


>ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
 emb|CDN68224.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1830

 Score =  360 bits (924), Expect = e-109
 Identities = 184/373 (49%), Positives = 247/373 (66%), Gaps = 6/373 (1%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH++H RIEKRKHL+RN++CKC+LCG+EGHFAREC ++ ++ KR+A+FE L++PDD DI+
Sbjct: 773  PHESHARIEKRKHLVRNKRCKCFLCGQEGHFARECPNDRKSSKRMAMFENLELPDDCDIV 832

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACIQT-EYIYMLGEIDGGYRPQVKLPEHQLNC 779
            SV EGE+ SDAI+S+SE  GE+    L+  +QT E + MLGE+DGGYRPQ+KLP+ Q NC
Sbjct: 833  SVQEGEELSDAIYSISE--GEDNDEELQRSLQTMEIVLMLGEVDGGYRPQIKLPDEQFNC 890

Query: 778  LHK*QLNS-FVEAKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXXXXX 602
             H    N   +  K  KC  C R+++ RARIHC  C +T+CN+CGPYY            
Sbjct: 891  AHNWVHNGEILVQKAIKCSFCRRESLKRARIHCPLCLLTACNLCGPYYLKIEVPVDPAPS 950

Query: 601  XXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKP----M 434
                 + +IQEQ  YI WCE EI RL  E K+ K     L   KSL++D+E L+      
Sbjct: 951  TPLNPRRIIQEQHNYIGWCEAEIERLNKEVKHYKGLYEALLTEKSLKKDYEDLREGDIKR 1010

Query: 433  GETSQKEHTEEYANILLQESILKVSQEGQSGPRLVKNMLYNMKIELDIPGVPRFSVRAIL 254
            G+    +  E+   +   E +L    E +   RLVKNMLYN  IE +IP VP+F VRAIL
Sbjct: 1011 GKGVMIQEPEDINYLGENEKVLIAGAEERK--RLVKNMLYNFDIEFEIPDVPKFKVRAIL 1068

Query: 253  DTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRIPYTYS 74
            DTGA+TCC++E ++P EA+E +   VQ +G+NS Q +  KLK GRM IG N+FRIP+TYS
Sbjct: 1069 DTGASTCCVNEGAVPKEAIEDSPYEVQLNGVNSVQKTKKKLKYGRMMIGMNSFRIPFTYS 1128

Query: 73   FEMTLGDGIQMIL 35
              + +GD IQMI+
Sbjct: 1129 LPLVIGDNIQMIV 1141


>gb|ANK58536.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  359 bits (922), Expect = e-108
 Identities = 188/374 (50%), Positives = 250/374 (66%), Gaps = 7/374 (1%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH++H RIEKRKHL+RN++CKC+LCG+EGHFAREC ++ R+ KR+A+FE L++P+D DI+
Sbjct: 794  PHESHARIEKRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIV 853

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACIQT-EYIYMLGEIDGGYRPQVKLPEHQLNC 779
            SV EGED SDAI+S+S  EGE+G+  L+  +QT E + MLGEIDGGYRPQ+KLPE Q+NC
Sbjct: 854  SVEEGEDMSDAIYSIS--EGEDGADELQRSLQTLEIVLMLGEIDGGYRPQIKLPEEQMNC 911

Query: 778  LHK*QLNS--FVEAKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXXXX 605
            +H    N   FV+ +   C  C R+++ RARIHC  C +T+CN+CGPYY           
Sbjct: 912  VHNWIHNGDIFVQ-RAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAP 970

Query: 604  XXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKPMGET 425
                  + +IQEQ  YI WCE EI RL  E K+ K     L +  SL++D+E+L    + 
Sbjct: 971  STPINPRRIIQEQHNYIGWCEVEIERLNKEVKHYKGLYEALLMETSLRKDYEELIDGDKE 1030

Query: 424  SQK----EHTEEYANILLQESILKVSQEGQSGPRLVKNMLYNMKIELDIPGVPRFSVRAI 257
             +K    +  EE   +   E IL    E +   + VKNMLYN  IE +IP V RF VRAI
Sbjct: 1031 RRKGILIQEPEEVNYLGEDEKILAAGTEEKK--KFVKNMLYNSDIESEIPDVSRFRVRAI 1088

Query: 256  LDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRIPYTY 77
            LDTGA+TCCI+E ++P EA+E +   VQ +G+NS Q +  KLK GRM IG N FRIP+TY
Sbjct: 1089 LDTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMNTFRIPFTY 1148

Query: 76   SFEMTLGDGIQMIL 35
            S  + +GD IQMI+
Sbjct: 1149 SLPLVIGDNIQMIV 1162


>gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1789

 Score =  358 bits (918), Expect = e-108
 Identities = 184/373 (49%), Positives = 246/373 (65%), Gaps = 6/373 (1%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH++H RIEKRKHL+RN++CKC+LCG+EGHFAREC ++ ++ KR+A+FE L++P+D DI+
Sbjct: 809  PHESHARIEKRKHLVRNKRCKCFLCGQEGHFARECPNDRKSTKRMAMFENLELPEDCDIV 868

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACIQT-EYIYMLGEIDGGYRPQVKLPEHQLNC 779
            SV EGE+ SDAI+S+SE  GE+    L+  +QT E + MLGE+DGGYRPQ+KLP+ Q NC
Sbjct: 869  SVQEGEELSDAIYSISE--GEDDVEELQRSLQTLELVLMLGEVDGGYRPQIKLPDEQFNC 926

Query: 778  LHK*QLNS-FVEAKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXXXXX 602
             H    N   +  K  KC  C R ++ RARIHC  C +T+CN+CGPYY            
Sbjct: 927  AHNWVHNGEILVPKAIKCSFCKRDSLKRARIHCPLCLLTACNLCGPYYLKIEVPVDPAPS 986

Query: 601  XXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKP----M 434
                 + +IQEQ  YI WCE EI RL  E K+ K     L   K+L++D+E LK      
Sbjct: 987  TPLNPRRIIQEQHNYIGWCEAEIERLNKEVKHYKGLYEALLTEKALKKDYEDLKEGDIKR 1046

Query: 433  GETSQKEHTEEYANILLQESILKVSQEGQSGPRLVKNMLYNMKIELDIPGVPRFSVRAIL 254
            G+    + TE+   +   E  L    E +   RLVKNMLYN  IE +IP VP+F VRAIL
Sbjct: 1047 GKGIMIQETEDINYLGENEKALIAGAEERK--RLVKNMLYNFDIEFEIPDVPKFKVRAIL 1104

Query: 253  DTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRIPYTYS 74
            DTGA+TCC++E ++P EA+E +   VQ +G+NS Q +  KLK GRM IG N+FRIP+TYS
Sbjct: 1105 DTGASTCCVNEGAVPKEAIEDSPYEVQLNGVNSVQKTKKKLKYGRMMIGMNSFRIPFTYS 1164

Query: 73   FEMTLGDGIQMIL 35
              + +GD IQMI+
Sbjct: 1165 LPLVIGDNIQMIV 1177


>gb|ANK58545.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  357 bits (916), Expect = e-107
 Identities = 187/374 (50%), Positives = 249/374 (66%), Gaps = 7/374 (1%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH++H RIEKRKHL+RN++CKC+LCG+EGHFAREC ++ R+ KR+A+FE L++P+D DI+
Sbjct: 794  PHESHARIEKRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIV 853

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACIQT-EYIYMLGEIDGGYRPQVKLPEHQLNC 779
            SV EGED SDAI+S+S  EGE+G+  L+  +QT E + MLGEIDGGYRPQ+KLPE Q+NC
Sbjct: 854  SVEEGEDMSDAIYSIS--EGEDGADELQRSLQTLEIVLMLGEIDGGYRPQIKLPEEQMNC 911

Query: 778  LHK*QLNS--FVEAKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXXXX 605
            +H    N   FV+ +   C  C R+++ RARIHC  C +T+CN+CGPYY           
Sbjct: 912  VHNWIHNGDIFVQ-RAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAP 970

Query: 604  XXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKPMGET 425
                  + +IQEQ  YI WCE EI RL  E  + K     L +  SL++D+E+L    + 
Sbjct: 971  STPINPRRIIQEQHNYIGWCEVEIERLNKEVMHYKGLYEALLMETSLRKDYEELIEGDKE 1030

Query: 424  SQK----EHTEEYANILLQESILKVSQEGQSGPRLVKNMLYNMKIELDIPGVPRFSVRAI 257
             +K    +  EE   +   E IL    E +   + VKNMLYN  IE +IP V RF VRAI
Sbjct: 1031 RRKGIMIQEPEEVNYLGEDEKILAAGTEEKK--KFVKNMLYNSDIESEIPDVSRFRVRAI 1088

Query: 256  LDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRIPYTY 77
            LDTGA+TCCI+E ++P EA+E +   VQ +G+NS Q +  KLK GRM IG N FRIP+TY
Sbjct: 1089 LDTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMNTFRIPFTY 1148

Query: 76   SFEMTLGDGIQMIL 35
            S  + +GD IQMI+
Sbjct: 1149 SLPLVIGDNIQMIV 1162


>gb|ACH86211.1| unknown [Citrus yellow mosaic virus]
          Length = 1490

 Score =  331 bits (849), Expect = 4e-99
 Identities = 177/378 (46%), Positives = 241/378 (63%), Gaps = 11/378 (2%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH+TH RIEK KHL RN+KCKCYLCG+EGHFAREC S+ RN+KRVA+FE LD+PDD +I+
Sbjct: 417  PHNTHARIEKTKHL-RNKKCKCYLCGEEGHFARECPSDRRNVKRVAMFEGLDLPDDCEIV 475

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACI----QTEYIYMLGEIDGGYRPQVKLPEHQ 788
            S+ EGE  SDAIFS+SE  GEE  A  + C     +    Y LG+  GGY+  V++ +  
Sbjct: 476  SIDEGEPDSDAIFSISE--GEETGAIEEQCFVFQEECNGTYWLGK-RGGYQDLVQISKEI 532

Query: 787  LNCLHK*QLNSFVE-AKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXX 611
              C H+ + N  ++   + +C  C R+T  RAR+HC+ C +TSC +CGP Y         
Sbjct: 533  YYCQHEWEENQPIDDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQP 592

Query: 610  XXXXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKPMG 431
                    +GL+Q+Q+ YI+WC  EI+RLK E  + K    E +L   L++  ++L    
Sbjct: 593  MPQAPFNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGTD 652

Query: 430  ETSQKEH---TEEYANILLQESILKVSQEGQSG---PRLVKNMLYNMKIELDIPGVPRFS 269
               +K+     +E +     E   ++   G +     R VKNMLYNM + ++IPG+P F+
Sbjct: 653  ARRRKDKGVVIDEGSCYFNPEETTRIIAHGDTQVTKTRPVKNMLYNMDVRMEIPGIPAFT 712

Query: 268  VRAILDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRI 89
            V+AILDTGATTCCID RS+P +A+E N+ +V FSGINSKQ    K+K G+M I E+ FRI
Sbjct: 713  VKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKIKAGKMFINEHYFRI 772

Query: 88   PYTYSFEMTLGDGIQMIL 35
            PY YSFEM +GDGIQ+IL
Sbjct: 773  PYCYSFEMQIGDGIQLIL 790


>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1967

 Score =  332 bits (851), Expect = 6e-99
 Identities = 176/378 (46%), Positives = 242/378 (64%), Gaps = 11/378 (2%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH+TH RIEK KHL RN+KCKCYLCG+EGHFAREC ++ RN+KRVA+FE LD+PDD +I+
Sbjct: 893  PHNTHARIEKTKHL-RNKKCKCYLCGEEGHFARECPNDRRNVKRVAMFEGLDLPDDCEIV 951

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACI----QTEYIYMLGEIDGGYRPQVKLPEHQ 788
            S+ EG+  SDAIFS+SE  GEE  A  + C     +    Y LG+  GGY+  V++ +  
Sbjct: 952  SIDEGDPDSDAIFSISE--GEETGAIEEQCFVFQEECNGTYWLGK-RGGYQDLVQISKEI 1008

Query: 787  LNCLHK*QLNSFVE-AKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXX 611
              C H+ + N  ++ + Y +C  C R+T  RAR+HC+ C +TSC +CGP Y         
Sbjct: 1009 YYCQHEWEENQPIDDSAYVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQP 1068

Query: 610  XXXXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKPMG 431
                    +GL+Q+Q+ YI+WC  EI+RLK E  + K    E +L   L++  ++L    
Sbjct: 1069 IPQAPFNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGAD 1128

Query: 430  ETSQKEH---TEEYANILLQESILKVSQEGQSG---PRLVKNMLYNMKIELDIPGVPRFS 269
               +K+     +E +     E   ++   G +     R VKNMLYNM + ++IPG+P F+
Sbjct: 1129 SRRRKDKGVVIDEGSCYFNPEETTRIVAHGDTQVTKTRPVKNMLYNMDVRMEIPGIPAFT 1188

Query: 268  VRAILDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRI 89
            V+AILDTGATTCCID RS+P +A+E N+ +V FSGINSKQ    K+K G+M I E+ FRI
Sbjct: 1189 VKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKIKAGKMFINEHYFRI 1248

Query: 88   PYTYSFEMTLGDGIQMIL 35
            PY YSFEM +GDGIQ+IL
Sbjct: 1249 PYCYSFEMQIGDGIQLIL 1266


>ref|NP_569153.1| unknown [Citrus yellow mosaic virus]
 gb|AAL18495.1|AF347695_3 unknown [Citrus yellow mosaic virus]
          Length = 1983

 Score =  329 bits (843), Expect = 7e-98
 Identities = 175/378 (46%), Positives = 240/378 (63%), Gaps = 11/378 (2%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH TH RIEK KHL RN+KCKCYLCG+EGHFAREC ++ RN+KRVA+FE LD+PDD +I+
Sbjct: 909  PHSTHARIEKTKHL-RNKKCKCYLCGEEGHFARECPNDRRNVKRVAMFEGLDLPDDCEIV 967

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACI----QTEYIYMLGEIDGGYRPQVKLPEHQ 788
            S+ EG+  SDAIFS+SE  GEE     + C     +    Y LG+  GGY+  V++ +  
Sbjct: 968  SIDEGDPDSDAIFSISE--GEEAGTLEEQCFVFQEECNGTYWLGK-RGGYQDLVQISKEI 1024

Query: 787  LNCLHK*QLNSFV-EAKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXX 611
              C H+ + N  + +  + +C  C R+T  RAR+HC+ C +TSC +CGP Y         
Sbjct: 1025 YYCQHEWEENQPINDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQP 1084

Query: 610  XXXXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKPMG 431
                    +GL+Q+Q+ YI+WC  EI+RLK E  + K    E +L   L++  ++L  + 
Sbjct: 1085 MPQAPFNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGVD 1144

Query: 430  ETSQKEH---TEEYANILLQESILKVSQEGQSG---PRLVKNMLYNMKIELDIPGVPRFS 269
               +K+     +E +     E   ++   G +     R VKNMLYNM + ++IPG+P F+
Sbjct: 1145 SRRRKDKGIVIDEGSCYFNPEETTRIIAHGDTQVTKTRPVKNMLYNMDVRMEIPGIPAFT 1204

Query: 268  VRAILDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRI 89
            V+AILDTGATTCCID RS+P +A+E N+ +V FSGINSKQ    KLK G+M I E+ FRI
Sbjct: 1205 VKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKLKTGKMFINEHYFRI 1264

Query: 88   PYTYSFEMTLGDGIQMIL 35
            PY YSFEM +GDGIQ+IL
Sbjct: 1265 PYCYSFEMQIGDGIQLIL 1282


>gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1976

 Score =  328 bits (841), Expect = 1e-97
 Identities = 175/378 (46%), Positives = 241/378 (63%), Gaps = 11/378 (2%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH+TH RIEK KHL RN+KCKCYLCG+EGHFAREC ++ RN+KRVA+FE LD+PDD +I+
Sbjct: 901  PHNTHARIEKTKHL-RNKKCKCYLCGEEGHFARECPNDRRNVKRVAMFEGLDLPDDCEIV 959

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACI----QTEYIYMLGEIDGGYRPQVKLPEHQ 788
            S+ EG+  SDAIFS+SE  GEE  A  + C     +    Y LG+  GGY+  V++ +  
Sbjct: 960  SIDEGDPDSDAIFSISE--GEETGAFEEQCFVFQEECNGTYWLGK-RGGYQDLVQISKEI 1016

Query: 787  LNCLHK*QLNSFVE-AKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXX 611
              C H+ + N  ++   + +C  C R+T  RAR+HC+ C +TSC +CGP Y         
Sbjct: 1017 YYCQHEWEENQPIDDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNRKITVQP 1076

Query: 610  XXXXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKPMG 431
                    +GL+Q+Q+ YI+WC  EI+RLK E  + K    E +L   L++  ++L    
Sbjct: 1077 IPQAPFNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGAD 1136

Query: 430  ETSQKEH---TEEYANILLQESILKVSQEGQSG---PRLVKNMLYNMKIELDIPGVPRFS 269
               +K+     +E +     E   ++   G +     R VKNMLYNM + ++IPG+P F+
Sbjct: 1137 SRRRKDKGVVIDEGSCYFNPEETTRIVAHGDTQVTKTRPVKNMLYNMDVRIEIPGIPAFT 1196

Query: 268  VRAILDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRI 89
            V+AILDTGATTCCID RS+P +A+E N+ +V FSGINSKQ    K+K G+M I E+ FRI
Sbjct: 1197 VKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKIKPGKMFISEHYFRI 1256

Query: 88   PYTYSFEMTLGDGIQMIL 35
            PY YSFEM +GDGIQ+IL
Sbjct: 1257 PYCYSFEMQIGDGIQLIL 1274


>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1968

 Score =  327 bits (839), Expect = 2e-97
 Identities = 174/378 (46%), Positives = 239/378 (63%), Gaps = 11/378 (2%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH TH RIEK KHL RN+KCKCYLCG+EGHFAREC ++ RN+KRVA+FE LD+PDD +I+
Sbjct: 894  PHSTHARIEKTKHL-RNKKCKCYLCGEEGHFARECPNDRRNVKRVAMFEGLDLPDDCEIV 952

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACI----QTEYIYMLGEIDGGYRPQVKLPEHQ 788
            S+ EG+  SDAIFS+SE  GEE     + C     +    Y LG+  GGY+  V++ +  
Sbjct: 953  SIDEGDPDSDAIFSISE--GEEAGTLEEQCFVFQEECNGTYWLGK-RGGYQDLVQISKEI 1009

Query: 787  LNCLHK*QLNSFV-EAKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXX 611
              C H+ + N  + +  + +C  C R+T  RAR+HC+ C +TSC +CGP Y         
Sbjct: 1010 YYCQHEWEENQPINDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQP 1069

Query: 610  XXXXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKPMG 431
                    +GL+Q+Q+ YI+WC  EI+RLK E  + K    E +L   L++  ++L    
Sbjct: 1070 IPQAPFNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGTD 1129

Query: 430  ETSQKEH---TEEYANILLQESILKVSQEGQSG---PRLVKNMLYNMKIELDIPGVPRFS 269
               +K+     +E +     E   ++   G +     R V+NMLYNM + ++IPG+P F+
Sbjct: 1130 ARRRKDKGVVIDEGSCYFNPEETTRIVAHGDTQVTKTRPVRNMLYNMDVRMEIPGIPAFT 1189

Query: 268  VRAILDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRI 89
            V+AILDTGATTCCID RS+P +A+E N+ +V FSGINSKQ    KLK G+M I E+ FRI
Sbjct: 1190 VKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKLKAGKMFINEHYFRI 1249

Query: 88   PYTYSFEMTLGDGIQMIL 35
            PY YSFEM +GDGIQ+IL
Sbjct: 1250 PYCYSFEMQIGDGIQLIL 1267


>gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1979

 Score =  326 bits (836), Expect = 6e-97
 Identities = 176/380 (46%), Positives = 242/380 (63%), Gaps = 13/380 (3%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH+TH RIEK KHL RN+KCKCYLCG+EGHFAREC ++ RN+KRVA+FE LD+PDD +I+
Sbjct: 901  PHNTHARIEKTKHL-RNKKCKCYLCGEEGHFARECPNDRRNVKRVAMFEGLDLPDDCEIV 959

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACI----QTEYIYMLGEIDGGYRPQVKLP--E 794
            S+ EG+  SDAIFS+SE  GEE  A  + C     +    Y LG+  GGY+  V++P  +
Sbjct: 960  SIDEGDPDSDAIFSISE--GEETGAFEEQCFVFQEECNGTYWLGK-RGGYQDLVQIPISK 1016

Query: 793  HQLNCLHK*QLNSFVE-AKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXX 617
                C H+ + N  ++   + +C  C R+T  RAR+HC+ C +TSC +CGP Y       
Sbjct: 1017 EIYYCQHEWEENQPIDDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITV 1076

Query: 616  XXXXXXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKP 437
                      +GL+Q+Q+ YI+WC  EI+RLK E  + K    E +L   L++  ++L  
Sbjct: 1077 QPIPQAPFNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAG 1136

Query: 436  MGETSQKEH---TEEYANILLQESILKVSQEGQSG---PRLVKNMLYNMKIELDIPGVPR 275
                 +K+     +E +     E   ++   G +     R VKNMLYNM + ++IPG+P 
Sbjct: 1137 ADSRRRKDKGVVIDEGSCYFNPEETTRIVAHGDTQVTKTRPVKNMLYNMDVRMEIPGIPA 1196

Query: 274  FSVRAILDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNF 95
            F+V+AILDTGATTCCID RS+P +A+E N+ +V FSGINSKQ    K+K G+M I E+ F
Sbjct: 1197 FTVKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKIKPGKMFISEHYF 1256

Query: 94   RIPYTYSFEMTLGDGIQMIL 35
            RIPY YSFEM +GDGIQ+IL
Sbjct: 1257 RIPYCYSFEMQIGDGIQLIL 1276


>gb|AER00538.1| ORF III [Citrus yellow mosaic virus]
          Length = 1982

 Score =  324 bits (831), Expect = 3e-96
 Identities = 173/378 (45%), Positives = 238/378 (62%), Gaps = 11/378 (2%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH TH RIEK KHL RN+KCKCYLCG+EGHFAREC ++ RN+KRVA+FE L +PDD +I+
Sbjct: 908  PHSTHARIEKTKHL-RNKKCKCYLCGEEGHFARECPNDRRNVKRVAMFEGLGLPDDCEIV 966

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACI----QTEYIYMLGEIDGGYRPQVKLPEHQ 788
            S+ EG+  SDAIFS+SE  GEE     + C     +    Y LG+  GGY+  V++ +  
Sbjct: 967  SIDEGDPDSDAIFSISE--GEEAGTLEEQCFVFQEECNGTYWLGK-RGGYQDLVQISKEI 1023

Query: 787  LNCLHK*QLNSFV-EAKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXX 611
              C H+ + N  + +  + +C  C R+T  RAR+HC+ C +TSC +CGP Y         
Sbjct: 1024 YYCQHEWEENQPINDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKRITVQP 1083

Query: 610  XXXXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKPMG 431
                    +GL+Q+Q+ YI+WC  EI+RLK E  + K    E +L   L++  ++L  + 
Sbjct: 1084 MPQAPFNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGVD 1143

Query: 430  ETSQKEH---TEEYANILLQESILKVSQEGQSG---PRLVKNMLYNMKIELDIPGVPRFS 269
               +K+     +E +     E   ++   G +     R VKNMLYNM + ++IPG+P F+
Sbjct: 1144 SRRRKDKGVVIDEGSCYFNPEETTRIIAHGDTQVTKTRPVKNMLYNMDVRMEIPGIPAFT 1203

Query: 268  VRAILDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRI 89
            V+AILDTGATTCCID RS+P +A+E N+ +V FSGINSKQ    KLK G+M I E+ FRI
Sbjct: 1204 VKAILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKLKAGKMFINEHYFRI 1263

Query: 88   PYTYSFEMTLGDGIQMIL 35
            PY YSF M +GDGIQ+IL
Sbjct: 1264 PYCYSFVMQIGDGIQLIL 1281


>gb|AER00544.1| ORF III [Citrus yellow mosaic virus]
          Length = 1976

 Score =  321 bits (823), Expect = 3e-95
 Identities = 171/378 (45%), Positives = 238/378 (62%), Gaps = 11/378 (2%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH+TH RIEK KHL RN+KCKCYLCG+E HFAREC ++ RN+KRVA+FE LD+PDD +I+
Sbjct: 901  PHNTHARIEKTKHL-RNKKCKCYLCGEERHFARECPNDRRNVKRVAMFEGLDLPDDCEIV 959

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACI----QTEYIYMLGEIDGGYRPQVKLPEHQ 788
            S+ EG+  SDAIFS+SE  GEE  A  + C     +    Y LG+  GGY+  V++ +  
Sbjct: 960  SIDEGDPDSDAIFSISE--GEETGAFEEQCFVFQEECNGTYWLGK-RGGYQDLVQISKET 1016

Query: 787  LNCLHK*QLNSFVE-AKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXXXXXX 611
              C H+ + N  ++   + +C  C R+T  RAR+HC+ C +TSC +CGP Y         
Sbjct: 1017 YYCQHEWEENQPIDDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQP 1076

Query: 610  XXXXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKLKPMG 431
                    +GL+Q+Q+ YI+WC  EI+RLK E  + K    E +L   L++  ++L    
Sbjct: 1077 IPQAPFNQKGLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGAD 1136

Query: 430  ETSQKEH---TEEYANILLQESILKVSQEGQSG---PRLVKNMLYNMKIELDIPGVPRFS 269
               +K+     +E +     E   ++   G +     R V+NMLYNM + ++IPG+P F+
Sbjct: 1137 SRRRKDKGVVIDEGSCYFNPEETTRIVAHGDTQVTKTRPVRNMLYNMDVRMEIPGIPAFT 1196

Query: 268  VRAILDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGRMQIGENNFRI 89
            V+ I DTGATTCCID RS+P +A+E N+ +V FSGINSKQ    K+K G+M I E+ FRI
Sbjct: 1197 VKTIHDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKIKSGKMFINEHYFRI 1256

Query: 88   PYTYSFEMTLGDGIQMIL 35
            PY YSFEM +GDGIQ+IL
Sbjct: 1257 PYCYSFEMQIGDGIQLIL 1274


>gb|ATZ69482.1| ORF3 polyprotein [Cacao swollen shoot Ghana M virus]
          Length = 1831

 Score =  319 bits (818), Expect = 2e-94
 Identities = 173/388 (44%), Positives = 237/388 (61%), Gaps = 21/388 (5%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH+TH R+EKRKHLIRN+KCKCYLCG EGHFAREC +  R++KRVA+FE +D+P+ +DI+
Sbjct: 753  PHETHARVEKRKHLIRNKKCKCYLCGDEGHFARECPNSKRDVKRVAIFEGIDLPEGYDII 812

Query: 955  SVHEGEDQSDAIFSVSENEGEEGSAALKACIQTEYIYMLGEIDGGY--------RPQVKL 800
            SV EGE +SDAI+S+SENE E      +  ++TE ++M  E D  Y           VK+
Sbjct: 813  SVEEGEAESDAIYSISENEDE---VLPEEGVKTEKVFMFREEDQTYWLGRKNHWTAMVKV 869

Query: 799  PEHQLNCLHK*QLN-SFVEAKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXXX 623
               Q NCLH+ + N    +  Y KC  C +QT +R+RIHC  C +T+C +C P Y     
Sbjct: 870  SSQQYNCLHQWEHNQEITQVAYLKCYFCKQQTHIRSRIHCSTCTLTACFMCAPVYCNTTV 929

Query: 622  XXXXXXXXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEKL 443
                          L+Q+Q+ YI W E E  RL    +  K E++ELK+ K L+    +L
Sbjct: 930  QQAPKQAIPYNPNTLLQQQQGYIQWLEAENKRLAETVELYKHEIAELKMEKELELSRREL 989

Query: 442  ------KPMGETSQKEHTEEYANILLQESILKVSQEGQSGPRLVK-----NMLYNMKIEL 296
                  KP G+  Q +  +E +  L +++I++V   G    ++ K     NMLYNM + L
Sbjct: 990  ERETPKKPHGKGIQIKEDDEQSAYLEEDTIVRVIGHGTEEQQVSKPVKKGNMLYNMDVVL 1049

Query: 295  DIPGVPR-FSVRAILDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGR 119
             IP V R   V+AILDTGATTCCI+  S+P  A+E+N  +V F GINS Q+ D KLK G+
Sbjct: 1050 MIPEVGRPIKVKAILDTGATTCCINIASVPATAIEQNTFMVHFKGINSSQSVDKKLKYGK 1109

Query: 118  MQIGENNFRIPYTYSFEMTLGDGIQMIL 35
            M I  + FRIPY Y+F ++LGDGI+MIL
Sbjct: 1110 MMISNHQFRIPYCYAFPISLGDGIEMIL 1137


>gb|ASG91848.1| polyprotein [Cacao swollen shoot virus]
          Length = 1837

 Score =  314 bits (804), Expect = 1e-92
 Identities = 177/390 (45%), Positives = 236/390 (60%), Gaps = 23/390 (5%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH +H RIEKRKHLIRN+KCKCYLCG EGHFAREC +  R++KRVA+FE +++P+ FDI+
Sbjct: 768  PHTSHARIEKRKHLIRNKKCKCYLCGDEGHFARECPNNKRDVKRVAIFEGINLPEGFDIV 827

Query: 955  SVHEGEDQSDAIFSVSENE-GEEGSAALKACIQTEYIYMLGEIDGGY--------RPQVK 803
            SV EGED SDAI+S+SENE GEE    L   +  E ++M+ E D  Y           V+
Sbjct: 828  SVEEGEDDSDAIYSISENENGEE----LDEEVVQEKVFMMKEEDQSYWLGKTNHWTAMVR 883

Query: 802  LPEHQLNCLHK*QLN-SFVEAKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXX 626
            +   Q +CLH+ + N       +  C  C + T LR+RIHC  C++TSC +C P Y    
Sbjct: 884  VSSQQYHCLHQWEHNKEITTVAHINCHFCKQPTQLRSRIHCPTCKLTSCFMCAPIYCNTT 943

Query: 625  XXXXXXXXXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEK 446
                           L+Q+Q  YI W EGE  RL    ++ K E ++L+L K L+ D + 
Sbjct: 944  VQQQPKPPTPFNTHTLLQQQAAYIQWLEGENQRLTEAVEFYKKEAADLRLEKELERDRQS 1003

Query: 445  LKP-MGETS-----QKEHTEEYANILLQESILKVSQEGQSGPRLVK------NMLYNMKI 302
            L+P M E       Q+   +E+   L +++I ++      G + VK      NMLYN+ +
Sbjct: 1004 LEPKMKERGKKVQIQEPSDDEHIAYLEEDTISRIIGHTMEGQQEVKKPAQRGNMLYNLDV 1063

Query: 301  ELDIPGVPR-FSVRAILDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKG 125
             L IP V R   V+AILDTGATTCCID  S+P  A+E+N  LVQF GINS Q+ D KLK 
Sbjct: 1064 VLIIPEVGRPIKVKAILDTGATTCCIDINSVPKAAIEQNTFLVQFRGINSTQSVDKKLKY 1123

Query: 124  GRMQIGENNFRIPYTYSFEMTLGDGIQMIL 35
            GRM I  + FRIPY Y+F ++LGDGI+MIL
Sbjct: 1124 GRMTISNHQFRIPYCYAFPLSLGDGIEMIL 1153


>gb|ATZ69449.1| ORF3 polyprotein [Cacao swollen shoot virus]
          Length = 1841

 Score =  314 bits (804), Expect = 1e-92
 Identities = 174/388 (44%), Positives = 240/388 (61%), Gaps = 21/388 (5%)
 Frame = -1

Query: 1135 PHDTHVRIEKRKHLIRNRKCKCYLCGKEGHFARECTSENRNIKRVALFEQLDVPDDFDIL 956
            PH +H R+EKRKHLIRN+KCKCYLCG EGHFA+EC +  R++KRVA+FE +++P+ FDI+
Sbjct: 769  PHASHARVEKRKHLIRNKKCKCYLCGDEGHFAKECPNNKRDVKRVAIFEGINLPEGFDIV 828

Query: 955  SVHEGEDQSDAIFSVSENE-GEEGSAALKACIQTEYIYMLGEIDGGY--------RPQVK 803
            SV EGED SDAI+S+SENE GEE    L A +  E I+M+ E D  Y           V+
Sbjct: 829  SVEEGEDDSDAIYSISENENGEE----LDAEVVQEKIFMMKEEDQSYWLGKTNHWTAMVR 884

Query: 802  LPEHQLNCLHK*QLN-SFVEAKYEKCVCCFRQTVLRARIHCQDCQVTSCNICGPYYXXXX 626
            +   Q +C+H+ + N   +   +  C  C + T LR+RIHC  C++TSC +C P Y    
Sbjct: 885  VSSQQYHCMHQWEHNKEIMVVAHINCHFCKQPTQLRSRIHCPTCKLTSCFMCAPIYCNTT 944

Query: 625  XXXXXXXXXXXXXQGLIQEQRYYISWCEGEISRLKAENKYLKWELSELKLGKSLQEDFEK 446
                           L+Q+Q  YI W EGE  RL    ++ K E + LKL K L++D  +
Sbjct: 945  VQQQPKPPAPFNTNTLLQQQAAYIQWLEGENQRLTEAVEFYKQEAANLKLEKDLEKDRRE 1004

Query: 445  LKP----MGETSQKEHTEEYANILLQESILKV----SQEGQSGPRLVK--NMLYNMKIEL 296
            L+P     G+  Q   + E+   L ++++ ++    ++E +   + VK  NMLYN+ + L
Sbjct: 1005 LEPKIQDRGKKVQIYESSEHTAYLEEDTVCRIIGHTTEEQKEVTKPVKRGNMLYNLDVVL 1064

Query: 295  DIPGVPR-FSVRAILDTGATTCCIDERSIPTEAVERNNTLVQFSGINSKQTSDMKLKGGR 119
             IP V R   V+AILDTGATTCCI+  S+P  A+E+N  LVQF GINS Q+ D KLK GR
Sbjct: 1065 HIPEVGRPIKVKAILDTGATTCCINVNSVPKTAIEQNTFLVQFRGINSTQSVDQKLKYGR 1124

Query: 118  MQIGENNFRIPYTYSFEMTLGDGIQMIL 35
            M I  + FRIPY Y+F ++LGDGI+MIL
Sbjct: 1125 MTISNHQFRIPYCYAFPLSLGDGIEMIL 1152