BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00057348
         (2359 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_569153.1| unknown [Citrus yellow mosaic virus] >gi|164169...   637   0.0  
gb|AER00538.1| ORF III [Citrus yellow mosaic virus]                   627   0.0  
gb|APB42235.1| ORF3 [Dioscorea bacilliform virus]                     600   0.0  
gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]                   711   0.0  
ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discolor...   706   0.0  
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] >gi|333493962...   704   0.0  
ref|YP_009229919.1| polyprotein [Blackberry Virus F] >gi|6892539...   605   0.0  
gb|ANK58542.1| polyprotein [Fig badnavirus 1]                         700   0.0  
gb|ASG91848.1| polyprotein [Cacao swollen shoot virus]                587   0.0  
gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration...   699   0.0  
gb|ANK58548.1| polyprotein [Fig badnavirus 1]                         697   0.0  
gb|ANK58539.1| polyprotein [Fig badnavirus 1]                         696   0.0  
ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] >gi|347...   582   0.0  
gb|ANK58545.1| polyprotein [Fig badnavirus 1]                         693   0.0  
gb|ATZ69449.1| ORF3 polyprotein [Cacao swollen shoot virus]           582   0.0  
gb|ANK58536.1| polyprotein [Fig badnavirus 1]                         692   0.0  
ref|YP_009408594.1| P3b [Jujube mosaic-associated virus] >gi|121...   592   0.0  
emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]               574   0.0  
gb|ASG91864.1| polyprotein [Cacao swollen shoot virus]                575   0.0  
gb|ASG91853.1| polyprotein [Cacao swollen shoot virus]                575   0.0  

>ref|NP_569153.1| unknown [Citrus yellow mosaic virus]
 gb|AAL18495.1|AF347695_3 unknown [Citrus yellow mosaic virus]
          Length = 1983

 Score =  637 bits (1644), Expect(3) = 0.0
 Identities = 325/620 (52%), Positives = 425/620 (68%), Gaps = 23/620 (3%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYI---YMLGELEGGYKPQVRLPEHQLNCLHEWQHNSFVQ-V 357
            +SE EEA T   +  + +E     Y LG+  GGY+  V++ +    C HEW+ N  +   
Sbjct: 982  ISEGEEAGTLEEQCFVFQEECNGTYWLGK-RGGYQDLVQISKEIYYCQHEWEENQPINDP 1040

Query: 358  QNEGCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNLIQEQQ 537
             +  C  CKR+T QRAR+HC    IT C +C P YF             F  + L+Q+QQ
Sbjct: 1041 AHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQPMPQAPFNQKGLLQQQQ 1100

Query: 538  YYIAWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGLRQMGESSSSEHTNVLYQ--- 708
             YIAWC  EI+RL +EV +++             +  K L  +      +   V+ +   
Sbjct: 1101 EYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGVDSRRRKDKGIVIDEGSC 1160

Query: 709  ----ESILKVSQEGQSG---PRLIKNMLYNMKVELDIPRVQRFSVRAILDTGATTCCIDE 867
                E   ++   G +     R +KNMLYNM V ++IP +  F+V+AILDTGATTCCID 
Sbjct: 1161 YFNPEETTRIIAHGDTQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDS 1220

Query: 868  RSIPADAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYSFEMTLGDGIQM 1047
            RS+P DA+E+N+ +V FSGINS+Q    KLK G+M I ++ FRIPY YSFEM +GDGIQ+
Sbjct: 1221 RSVPKDALEENSFVVNFSGINSKQQVKQKLKTGKMFINEHYFRIPYCYSFEMQIGDGIQL 1280

Query: 1048 IIGCNFVKAMQGGVRIEGNTMTFYKNLTVINTSPKVVAAI---------EEVNLDEEEYL 1200
            I+GCNF+++M GGVR+EGNT+TFYK +T INT  ++ A +         EE+NL  EE+ 
Sbjct: 1281 ILGCNFIRSMYGGVRLEGNTITFYKQITSINT--RLAAPLLKQEEEEKEEELNL--EEHR 1336

Query: 1201 AIKEAVYYNLEVSRKSFVSKFSPLIKQLEEAGFIGEDPLKHWAKNKVTCHLDIINPDFTV 1380
             I+E V Y+ E     F  KF+ LI+ L+  G+IGE+P+K+WAKN+V CHLDI NPD  +
Sbjct: 1337 LIQEMVAYSTERPFVQFQQKFAGLIQDLKAQGYIGEEPMKYWAKNQVVCHLDIKNPDMVI 1396

Query: 1381 ADKPLKHVTPQLQKALKRHTQPLLDLKVIRPSKSRHRTTTMIVNSGTTIDPQTGEEVKGK 1560
             D+PLKHVTPQ++++ ++H + LL +  IRPSKSRHRTT +IVNSGT+IDP TG+EVKGK
Sbjct: 1397 EDRPLKHVTPQMEESFRKHVEALLKIGAIRPSKSRHRTTAIIVNSGTSIDPITGKEVKGK 1456

Query: 1561 ERLVFNYKRLNDNTNKDQYSLPGINAIIKSVGNSRIYSKFDLKSGFHQVVMHPDSIEWTA 1740
            ER+VFNYKRLND TNKDQYSLPGI  I++ +  S I+SKFDLKSGFHQV MHPDSIEWTA
Sbjct: 1457 ERMVFNYKRLNDLTNKDQYSLPGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSIEWTA 1516

Query: 1741 FWAPDGLYEWLAMPFGLKNAPAVFQRKMDDCFRGTEDFIAVYIDDILVFSYSEEEHAKHL 1920
            FW P GLYEWL MPFGLKNAPA+FQRKMD CF+GTE FIAVYIDDILVFS +E++H KHL
Sbjct: 1517 FWVPSGLYEWLVMPFGLKNAPAIFQRKMDHCFKGTEAFIAVYIDDILVFSKTEQDHEKHL 1576

Query: 1921 KVMLRVCQEHGLVLSPSKMK 1980
            ++ML +CQ++GL+LSP+KMK
Sbjct: 1577 QIMLAICQKNGLILSPTKMK 1596



 Score =  170 bits (430), Expect(3) = 0.0
 Identities = 79/129 (61%), Positives = 97/129 (75%)
 Frame = +2

Query: 1973 K*NIAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLGLLNYARTYIL 2152
            K  IA +++EFLGAII    + LQPHI++K+     + L  +K LRSWLGLLNYAR+YI 
Sbjct: 1594 KMKIAQAEIEFLGAIIHKGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLNYARSYIP 1653

Query: 2153 NLGRLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCYMILETDRSMD 2332
            ++GRLL PLYAK SPTGERR N QDWAL+ +I+  V  LP LELPP  C++I+ETD  MD
Sbjct: 1654 HMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMD 1713

Query: 2333 GWGGVCKWK 2359
            GWGGVCKWK
Sbjct: 1714 GWGGVCKWK 1722



 Score = 95.1 bits (235), Expect(3) = 0.0
 Identities = 39/58 (67%), Positives = 52/58 (89%)
 Frame = +2

Query: 14   REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
            R KKC+CYLCG+EGHFARECP+++RNVKRVAMFE L++P+D +I+S+ +G+  SDAIF
Sbjct: 923  RNKKCKCYLCGEEGHFARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDPDSDAIF 980


>gb|AER00538.1| ORF III [Citrus yellow mosaic virus]
          Length = 1982

 Score =  627 bits (1616), Expect(3) = 0.0
 Identities = 321/620 (51%), Positives = 422/620 (68%), Gaps = 23/620 (3%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYI---YMLGELEGGYKPQVRLPEHQLNCLHEWQHNSFVQ-V 357
            +SE EEA T   +  + +E     Y LG+  GGY+  V++ +    C HEW+ N  +   
Sbjct: 981  ISEGEEAGTLEEQCFVFQEECNGTYWLGK-RGGYQDLVQISKEIYYCQHEWEENQPINDP 1039

Query: 358  QNEGCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNLIQEQQ 537
             +  C  CKR+T QRAR+HC    IT C +C P YF             F  + L+Q+QQ
Sbjct: 1040 AHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKRITVQPMPQAPFNQKGLLQQQQ 1099

Query: 538  YYIAWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGLRQMGESSSSEHTNVLYQ--- 708
             YIAWC  EI+RL +EV +++             +  K L  +      +   V+ +   
Sbjct: 1100 EYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGVDSRRRKDKGVVIDEGSC 1159

Query: 709  ----ESILKVSQEGQSG---PRLIKNMLYNMKVELDIPRVQRFSVRAILDTGATTCCIDE 867
                E   ++   G +     R +KNMLYNM V ++IP +  F+V+AILDTGATTCCID 
Sbjct: 1160 YFNPEETTRIIAHGDTQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKAILDTGATTCCIDS 1219

Query: 868  RSIPADAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYSFEMTLGDGIQM 1047
            RS+P DA+E+N+ +V FSGINS+Q    KLK G+M I ++ FRIPY YSF M +GDGIQ+
Sbjct: 1220 RSVPKDALEENSFVVNFSGINSKQQVKQKLKAGKMFINEHYFRIPYCYSFVMQIGDGIQL 1279

Query: 1048 IIGCNFVKAMQGGVRIEGNTMTFYKNLTVINTSPKVVAAI---------EEVNLDEEEYL 1200
            I+GCNF+++M GGVR+EGNT+TFYK +T INT  ++ A +         EE+NL  EE+ 
Sbjct: 1280 ILGCNFIRSMYGGVRLEGNTITFYKQITSINT--RLAAPLFKQEEEEKEEELNL--EEHR 1335

Query: 1201 AIKEAVYYNLEVSRKSFVSKFSPLIKQLEEAGFIGEDPLKHWAKNKVTCHLDIINPDFTV 1380
             I+E V Y+ E     F  KF+ LI+ L+  G+IGE+P+K+WAKN+V CHLDI NPD  +
Sbjct: 1336 LIQEMVAYSTERPFVQFQQKFAGLIQDLKAQGYIGEEPMKYWAKNQVVCHLDIKNPDMVI 1395

Query: 1381 ADKPLKHVTPQLQKALKRHTQPLLDLKVIRPSKSRHRTTTMIVNSGTTIDPQTGEEVKGK 1560
             D+PLKHVTPQ++++ ++H + LL +  IRPSKSRHRTT +I NSGT+IDP TG+EVKGK
Sbjct: 1396 EDRPLKHVTPQMEESFRKHVEALLKIGAIRPSKSRHRTTAIIANSGTSIDPITGKEVKGK 1455

Query: 1561 ERLVFNYKRLNDNTNKDQYSLPGINAIIKSVGNSRIYSKFDLKSGFHQVVMHPDSIEWTA 1740
            ER+VFNYKRLND TNKDQYSLPGI  I++ +  S I+SKFDLKSGFHQV MHPDSIEWTA
Sbjct: 1456 ERMVFNYKRLNDLTNKDQYSLPGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSIEWTA 1515

Query: 1741 FWAPDGLYEWLAMPFGLKNAPAVFQRKMDDCFRGTEDFIAVYIDDILVFSYSEEEHAKHL 1920
            FW P GLYEWL MPFGLKNAPAVFQRKMD CF+GTE FIAVYIDDI VFS +E++H ++L
Sbjct: 1516 FWVPSGLYEWLVMPFGLKNAPAVFQRKMDHCFKGTEAFIAVYIDDIQVFSKTEQDHEEYL 1575

Query: 1921 KVMLRVCQEHGLVLSPSKMK 1980
            ++ML +CQ++GL+LSP+KMK
Sbjct: 1576 QIMLSICQKNGLILSPTKMK 1595



 Score =  167 bits (423), Expect(3) = 0.0
 Identities = 78/129 (60%), Positives = 96/129 (74%)
 Frame = +2

Query: 1973 K*NIAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLGLLNYARTYIL 2152
            K  IA +++ FLGAII    + LQPHI++K+     + L  +K LRSWLGLLNYAR+YI 
Sbjct: 1593 KMKIAQAEIGFLGAIIHKGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLNYARSYIP 1652

Query: 2153 NLGRLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCYMILETDRSMD 2332
            ++GRLL PLYAK SPTGERR N QDWAL+ +I+  V  LP LELPP  C++I+ETD  MD
Sbjct: 1653 HMGRLLSPLYAKVSPTGERRMNRQDWALIDKIRAQVQNLPALELPPADCFIIIETDGCMD 1712

Query: 2333 GWGGVCKWK 2359
            GWGGVCKWK
Sbjct: 1713 GWGGVCKWK 1721



 Score = 94.7 bits (234), Expect(3) = 0.0
 Identities = 39/58 (67%), Positives = 51/58 (87%)
 Frame = +2

Query: 14   REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
            R KKC+CYLCG+EGHFARECP+++RNVKRVAMFE L +P+D +I+S+ +G+  SDAIF
Sbjct: 922  RNKKCKCYLCGEEGHFARECPNDRRNVKRVAMFEGLGLPDDCEIVSIDEGDPDSDAIF 979


>gb|APB42235.1| ORF3 [Dioscorea bacilliform virus]
          Length = 1897

 Score =  600 bits (1546), Expect(3) = 0.0
 Identities = 319/634 (50%), Positives = 407/634 (64%), Gaps = 29/634 (4%)
 Frame = +1

Query: 166  GTERRNLQVSENEEATTATLKTCIQEEYIYMLGELEGGYKPQVRLPEHQLNCLHEWQHNS 345
            G     +    N      TL    +E++ Y LG   GG++  V++ + + +C H W + +
Sbjct: 978  GENNEEIDQGVNVFINRETLYYLREEDHTYFLGG--GGWRCSVKVSQQEHDCKHRWDYYT 1035

Query: 346  FVQVQNEGCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFS-QNL 522
                  + C  CKR+ M+R    C +  I  C +C  HY             Q ++ Q L
Sbjct: 1036 NTA---DKCRFCKREVMKRWNARCQHCNILTCGMCSKHYVDLELPCQQEEIRQVYNPQQL 1092

Query: 523  IQEQQYYIAWCEGEISRLN------KEVEYFRXXXXXXXXXXXXWEDFKGLRQM---GES 675
            + EQQ YI  CE EI RL       K+V                 E  K L +M    + 
Sbjct: 1093 MMEQQNYIQSCEMEIQRLKDELAREKKVAEEMVVAARISEAVSQQESKKQLEEMKLENDR 1152

Query: 676  SSSEHTNVLYQESILKVSQEGQSGPRLI-----------------KNMLYNMKVELDIPR 804
             + E+ ++  +   LK+  E  +   LI                 +N LYN+ VELDIP 
Sbjct: 1153 LTLENEDLKKEIRSLKIQIEDMAVNVLICDGKDKHVAATLPLKERRNGLYNLIVELDIPG 1212

Query: 805  VQRFSVRAILDTGATTCCIDERSIPADAVEKNNTLVQFSGINSRQMADMKLKNGRM*IED 984
                 V AILDTGATTCCI+E  +P + +E N   V+F+G NS   A  KLKNG M I D
Sbjct: 1213 STPLKVNAILDTGATTCCINEEGLPKEILEDNTFEVKFTGANSVMTAIKKLKNGTMRIGD 1272

Query: 985  NNFRIPYTYSFEMTLGDGIQMIIGCNFVKAMQGGVRIEGNTMTFYKNLTVINTSPKV--V 1158
            + FRIPYTY+F + LG G Q+I+GCNF+++M GGVRIEGN +TFYKN+T I T  +V  V
Sbjct: 1273 HQFRIPYTYAFPLKLGGGEQLILGCNFIRSMNGGVRIEGNEVTFYKNVTTIQTQQEVPKV 1332

Query: 1159 AAIEEVNLDEEEYLAIKEAVYYNLEVSRKSFVSKFSPLIKQLEEAGFIGEDPLKHWAKNK 1338
             A+EE+ + EEEY+AI+E+      V   +F  +F  LI +L+ AG+IGE+P+K W+ NK
Sbjct: 1333 LALEELEMGEEEYIAIQESCSTICPVVNINFAQRFEDLILELKSAGYIGEEPMKFWSHNK 1392

Query: 1339 VTCHLDIINPDFTVADKPLKHVTPQLQKALKRHTQPLLDLKVIRPSKSRHRTTTMIVNSG 1518
            VTC L+IINP+ T+ DKPLKHVTP +++A ++H Q LL LKVIRPS SRHRTT  IV+SG
Sbjct: 1393 VTCKLEIINPELTIQDKPLKHVTPSMEEAFRKHVQALLKLKVIRPSTSRHRTTAFIVHSG 1452

Query: 1519 TTIDPQTGEEVKGKERLVFNYKRLNDNTNKDQYSLPGINAIIKSVGNSRIYSKFDLKSGF 1698
            TT+DP+TG E KGKER+VFNY+RLNDNT KDQYSLPGIN I+K +G S IYSKFDLKSGF
Sbjct: 1453 TTVDPKTGVETKGKERMVFNYRRLNDNTEKDQYSLPGINTILKRIGQSVIYSKFDLKSGF 1512

Query: 1699 HQVVMHPDSIEWTAFWAPDGLYEWLAMPFGLKNAPAVFQRKMDDCFRGTEDFIAVYIDDI 1878
            HQV M PDS++WTAFW PDGLYEWL MPFGLKNAPAVFQRKMD+CFRGTEDFIAVYIDDI
Sbjct: 1513 HQVAMDPDSVQWTAFWVPDGLYEWLVMPFGLKNAPAVFQRKMDNCFRGTEDFIAVYIDDI 1572

Query: 1879 LVFSYSEEEHAKHLKVMLRVCQEHGLVLSPSKMK 1980
            LVFS S+EEHA+HLK ML +C+ +GLVLSP+KMK
Sbjct: 1573 LVFSRSQEEHAQHLKQMLEICRRNGLVLSPTKMK 1606



 Score =  174 bits (440), Expect(3) = 0.0
 Identities = 79/129 (61%), Positives = 100/129 (77%)
 Frame = +2

Query: 1973 K*NIAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLGLLNYARTYIL 2152
            K  I    VEFLGA+IG+ K+ LQ HIIKKI    ++ + T K LRSWLG+LNYAR YI 
Sbjct: 1604 KMKIGTQVVEFLGAVIGNRKIQLQSHIIKKIADFSDEEIKTTKGLRSWLGILNYARNYIP 1663

Query: 2153 NLGRLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCYMILETDRSMD 2332
            NLG++LGPLY+KTSP+GE+R N QDW LV+++K  V++LPDL +PPE+C +I+ETD  M 
Sbjct: 1664 NLGKILGPLYSKTSPSGEKRMNAQDWELVRKVKKIVNELPDLIIPPEKCCIIIETDGCMS 1723

Query: 2333 GWGGVCKWK 2359
            GWGGVCKWK
Sbjct: 1724 GWGGVCKWK 1732



 Score = 95.9 bits (237), Expect(3) = 0.0
 Identities = 39/58 (67%), Positives = 53/58 (91%)
 Frame = +2

Query: 14   REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
            RE++C+C+LCG EGHFARECP++KRN+KRVA+FE L IPED +I+SVH+G++ SDAI+
Sbjct: 916  RERRCKCFLCGAEGHFARECPNDKRNIKRVAVFEGLEIPEDCEIVSVHEGDDLSDAIY 973


>gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]
          Length = 1846

 Score =  711 bits (1834), Expect = 0.0
 Identities = 352/609 (57%), Positives = 444/609 (72%), Gaps = 22/609 (3%)
 Frame = +1

Query: 220  TLKTCIQEEYIYMLGELEGGYKPQVRLPEHQLNCLHEWQHNS----FVQVQNEGCVCCKR 387
            +LK+ +  E ++MLGE +GG++P++++ + QL C H+W+HN     FV ++  GC C   
Sbjct: 862  SLKSLMITEKMFMLGEEDGGWRPKIKVSDEQLACQHKWEHNGEIQQFVYLKCLGCQC--- 918

Query: 388  KTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNLIQEQQYYIAWCEGEI 567
             TM+RARIHC     T CNLC P+YF                + LI EQQ +I WCE EI
Sbjct: 919  PTMKRARIHCPKCKATACNLCGPYYFKKEVPVAPPPPTPMNPRKLIMEQQNHIQWCEVEI 978

Query: 568  SRLNKEVEYFRXXXXXXXXXXXXWED----FKGLRQMGESS------------SSEHTNV 699
             RL KEV Y++             ED    +K L    E                E  N 
Sbjct: 979  ERLEKEVSYWKKLYENALRATGVIEDLQKDYKELLSEDEEKRKRRAKGVMIIEEGEQANF 1038

Query: 700  LYQESILKVS-QEGQSGPRLIKNMLYNMKVELDIPRVQRFSVRAILDTGATTCCIDERSI 876
            L +E + KV+ QE Q   ++++NMLYN  + +DIP + +FSV+AILDTGATTCCID+ SI
Sbjct: 1039 LQEEKVNKVAVQEEQRPKKMVRNMLYNFIISIDIPGIDKFSVKAILDTGATTCCIDQESI 1098

Query: 877  PADAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYSFEMTLGDGIQMIIG 1056
            P +A+E+N  LV+FSG+NS   A+ KLK GRM I +N FRIPYTYSF + + DG+QMI+G
Sbjct: 1099 PKEALEENTYLVRFSGVNSTMTANKKLKGGRMFIGENMFRIPYTYSFPIKMEDGVQMIVG 1158

Query: 1057 CNFVKAMQGGVRIEGNTMTFYKNLTVINTSPKV-VAAIEEVNLDEEEYLAIKEAVYYNLE 1233
            CNF++AM GGVRIEGN +TFYKNLTVINTS    +A + + ++D+EE   I+EAVY N+ 
Sbjct: 1159 CNFIRAMYGGVRIEGNVVTFYKNLTVINTSQSTEIARMLQEDVDDEELWQIQEAVYINIG 1218

Query: 1234 VSRKSFVSKFSPLIKQLEEAGFIGEDPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQ 1413
             SR+SF+ +F  LI QL+EAG+IGE+PL+HW KN+V C LDI NPDF + DKPLKH+TP 
Sbjct: 1219 KSRESFLKRFEALINQLKEAGYIGENPLQHWEKNRVVCQLDIKNPDFIIEDKPLKHLTPS 1278

Query: 1414 LQKALKRHTQPLLDLKVIRPSKSRHRTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLN 1593
            ++++ +RHT+ LL L VIRPSKSRHRTT MIV SGT +DP TG+E +GKER+VFNYKRLN
Sbjct: 1279 MKESFRRHTEALLKLGVIRPSKSRHRTTAMIVQSGTAVDPVTGKETRGKERMVFNYKRLN 1338

Query: 1594 DNTNKDQYSLPGINAIIKSVGNSRIYSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWL 1773
            D TNKDQYSLPGI+ I+K VGNSRIYSKFDLKSGFHQV MHPDSIEWTAFW PDGLYEWL
Sbjct: 1339 DLTNKDQYSLPGISTIMKKVGNSRIYSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWL 1398

Query: 1774 AMPFGLKNAPAVFQRKMDDCFRGTEDFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHG 1953
             MPFGLKNAPAVFQRKMD CF+GTEDFIAVYIDDILVFS +E++HA+HLK+ML++C+E+G
Sbjct: 1399 VMPFGLKNAPAVFQRKMDHCFKGTEDFIAVYIDDILVFSENEQDHARHLKIMLQICKENG 1458

Query: 1954 LVLSPSKMK 1980
            LVLSP+KMK
Sbjct: 1459 LVLSPTKMK 1467



 Score =  187 bits (475), Expect = 3e-45
 Identities = 89/139 (64%), Positives = 104/139 (74%)
 Frame = +2

Query: 1943 KNTGSS*AHRK*NIAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLG 2122
            K  G   +  K  IAV ++EFLGA+IG+ K+ LQPHII KI   +++ L   K LRSWLG
Sbjct: 1455 KENGLVLSPTKMKIAVQEIEFLGAVIGNRKIRLQPHIISKIASFKDEELKERKGLRSWLG 1514

Query: 2123 LLNYARTYILNLGRLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCY 2302
            LLNYARTYI NLGRLL PLYAKTSPTG++R N QDW LV  IK  V KLPDLE+PPE CY
Sbjct: 1515 LLNYARTYIPNLGRLLSPLYAKTSPTGDKRMNSQDWKLVADIKNLVQKLPDLEVPPESCY 1574

Query: 2303 MILETDRSMDGWGGVCKWK 2359
            ++LETD  M GWGG+CKWK
Sbjct: 1575 IVLETDGCMTGWGGICKWK 1593



 Score = 96.3 bits (238), Expect = 2e-16
 Identities = 38/58 (65%), Positives = 53/58 (91%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R K+C+CYLCG+EGHFARECP+++++ KRVAMFEQL +PED+ I+SV++GE+ SDAI+
Sbjct: 790 RNKRCKCYLCGEEGHFARECPNDRKSAKRVAMFEQLELPEDYDIVSVNEGEDNSDAIY 847


>ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
 emb|CDN68224.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1830

 Score =  706 bits (1823), Expect = 0.0
 Identities = 340/603 (56%), Positives = 440/603 (72%), Gaps = 8/603 (1%)
 Frame = +1

Query: 196  ENEEATTATLKTCIQEEYIYMLGELEGGYKPQVRLPEHQLNCLHEWQHNSFVQVQNE-GC 372
            +N+E    +L+T    E + MLGE++GGY+PQ++LP+ Q NC H W HN  + VQ    C
Sbjct: 852  DNDEELQRSLQTM---EIVLMLGEVDGGYRPQIKLPDEQFNCAHNWVHNGEILVQKAIKC 908

Query: 373  VCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNLIQEQQYYIAW 552
              C+R++++RARIHC   L+T CNLC P+Y                 + +IQEQ  YI W
Sbjct: 909  SFCRRESLKRARIHCPLCLLTACNLCGPYYLKIEVPVDPAPSTPLNPRRIIQEQHNYIGW 968

Query: 553  CEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGLRQMGESSSSEHTNVLYQESILKVSQ 732
            CE EI RLNKEV++++             +D++ LR+ G+    +   +   E I  + +
Sbjct: 969  CEAEIERLNKEVKHYKGLYEALLTEKSLKKDYEDLRE-GDIKRGKGVMIQEPEDINYLGE 1027

Query: 733  E-------GQSGPRLIKNMLYNMKVELDIPRVQRFSVRAILDTGATTCCIDERSIPADAV 891
                     +   RL+KNMLYN  +E +IP V +F VRAILDTGA+TCC++E ++P +A+
Sbjct: 1028 NEKVLIAGAEERKRLVKNMLYNFDIEFEIPDVPKFKVRAILDTGASTCCVNEGAVPKEAI 1087

Query: 892  EKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYSFEMTLGDGIQMIIGCNFVK 1071
            E +   VQ +G+NS Q    KLK GRM I  N+FRIP+TYS  + +GD IQMI+GCNF++
Sbjct: 1088 EDSPYEVQLNGVNSVQKTKKKLKYGRMMIGMNSFRIPFTYSLPLVIGDNIQMIVGCNFIR 1147

Query: 1072 AMQGGVRIEGNTMTFYKNLTVINTSPKVVAAIEEVNLDEEEYLAIKEAVYYNLEVSRKSF 1251
            AM GGVRIEGN +TFYKNLT I+TSP+V   + E  + EEEYL I++ V  N+  SR+SF
Sbjct: 1148 AMYGGVRIEGNEVTFYKNLTKISTSPEVSVNVLEEEVCEEEYLQIQDMVVCNIGESRESF 1207

Query: 1252 VSKFSPLIKQLEEAGFIGEDPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQKALK 1431
            + KF PLI++ +EAG+IGE+PL+HW KN V C LDI NPDF + D+PLK VTPQ++++ K
Sbjct: 1208 LKKFKPLIEEFQEAGYIGENPLQHWEKNGVLCQLDIKNPDFIIEDRPLKSVTPQMKESFK 1267

Query: 1432 RHTQPLLDLKVIRPSKSRHRTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNTNKD 1611
            RH + LLDLKVIRPSKSRHRTT M+VNSGTT+DP+TG+E KGKER+VFNYKRLND T+KD
Sbjct: 1268 RHVKALLDLKVIRPSKSRHRTTAMLVNSGTTVDPKTGKETKGKERMVFNYKRLNDITHKD 1327

Query: 1612 QYSLPGINAIIKSVGNSRIYSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMPFGL 1791
            QYSLPGIN I+K +GNS+I+SKFDLKSGFHQV MHPDSIEWTAFW PDGLYEWL MPFGL
Sbjct: 1328 QYSLPGINTILKRIGNSKIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMPFGL 1387

Query: 1792 KNAPAVFQRKMDDCFRGTEDFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVLSPS 1971
            KNAP++FQRKMD+CF GTE+FIAVYIDDILVFS  E+ HAKHL++ML +C+ +GLVLSP+
Sbjct: 1388 KNAPSIFQRKMDECFNGTEEFIAVYIDDILVFSEDEKSHAKHLRIMLGICKRNGLVLSPT 1447

Query: 1972 KMK 1980
            KMK
Sbjct: 1448 KMK 1450



 Score =  184 bits (466), Expect = 4e-44
 Identities = 90/142 (63%), Positives = 103/142 (72%)
 Frame = +2

Query: 1934 GYAKNTGSS*AHRK*NIAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRS 2113
            G  K  G   +  K  IAV +VEFLGA IG+ K+ LQPH+IKKI +  E  L   K +RS
Sbjct: 1435 GICKRNGLVLSPTKMKIAVQEVEFLGAQIGNQKIKLQPHVIKKIVEFNEAELKEKKGMRS 1494

Query: 2114 WLGLLNYARTYILNLGRLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPE 2293
            WLG+LNYAR YI NLGRLL PLYAKTSPTG++R N QDW LV QIK  V KLPDLE+PPE
Sbjct: 1495 WLGILNYARAYIPNLGRLLSPLYAKTSPTGDKRMNSQDWKLVSQIKEEVQKLPDLEIPPE 1554

Query: 2294 QCYMILETDRSMDGWGGVCKWK 2359
              ++ILETD  M GWGGVCKWK
Sbjct: 1555 DSFIILETDGCMTGWGGVCKWK 1576



 Score = 89.0 bits (219), Expect = 3e-14
 Identities = 36/58 (62%), Positives = 50/58 (86%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R K+C+C+LCGQEGHFARECP+++++ KR+AMFE L +P+D  I+SV +GEE SDAI+
Sbjct: 788 RNKRCKCFLCGQEGHFARECPNDRKSSKRMAMFENLELPDDCDIVSVQEGEELSDAIY 845


>ref|YP_006273075.1| polyprotein [Fig badnavirus 1]
 gb|AEF56561.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  704 bits (1817), Expect = 0.0
 Identities = 344/606 (56%), Positives = 442/606 (72%), Gaps = 9/606 (1%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYIYMLGELEGGYKPQVRLPEHQLNCLHEWQHNSFVQVQNE- 366
            +SE E+      K+    E + MLGE++GGY+PQ++LPE Q+NC+H W HN  + VQ   
Sbjct: 868  ISEGEDGADELQKSLQTLEIVLMLGEIDGGYRPQIKLPEEQMNCVHNWIHNGDIFVQRAV 927

Query: 367  GCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNLIQEQQYYI 546
             C  C+R++++RARIHC   L+T CNLC P+Y                 + +IQEQ  YI
Sbjct: 928  HCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAPSTPINPRRIIQEQHNYI 987

Query: 547  AWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGLRQMGES-------SSSEHTNVLY 705
             WCE EI RLNKEV++++             +D++ L++  +           E  N L 
Sbjct: 988  GWCEVEIERLNKEVKHYKGLYEALLMEKSLRKDYEELKEGDKERRKGIMIQEPEEVNYLG 1047

Query: 706  Q-ESILKVSQEGQSGPRLIKNMLYNMKVELDIPRVQRFSVRAILDTGATTCCIDERSIPA 882
            + E IL    E +   + +KNMLYN  +E +IP V RF VRAILDTGA+TCCI+E ++P 
Sbjct: 1048 EDEKILAAGTEEKK--KFVKNMLYNFDIEFEIPDVSRFRVRAILDTGASTCCINEGAVPK 1105

Query: 883  DAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYSFEMTLGDGIQMIIGCN 1062
            +A+E++   VQ +G+NS Q    KLK GRM I  N FRIP+TYS  + +GD IQMI+GCN
Sbjct: 1106 EALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCN 1165

Query: 1063 FVKAMQGGVRIEGNTMTFYKNLTVINTSPKVVAAIEEVNLDEEEYLAIKEAVYYNLEVSR 1242
            F++AM GGVRIEGN +TFYKNLT I+TSP+V     +  + EEEYL ++E V  N+  SR
Sbjct: 1166 FIRAMYGGVRIEGNEVTFYKNLTRISTSPEVSVNSLDEEVCEEEYLQVQEMVICNIGESR 1225

Query: 1243 KSFVSKFSPLIKQLEEAGFIGEDPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQK 1422
            KSF+ KF PL+++L+EAGFIGE+PL+HW KN + C LDI NPDF + D+PLK++TPQ+++
Sbjct: 1226 KSFLKKFRPLLEELKEAGFIGENPLQHWKKNGILCQLDIKNPDFIIEDRPLKNLTPQMKE 1285

Query: 1423 ALKRHTQPLLDLKVIRPSKSRHRTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNT 1602
            + K+H + LLDL VIR SKSRHRTT M+VNSGTT+DP+TG+E+K KER+VFNYKRLND T
Sbjct: 1286 SFKKHIKVLLDLGVIRASKSRHRTTAMLVNSGTTVDPKTGKEIKRKERMVFNYKRLNDIT 1345

Query: 1603 NKDQYSLPGINAIIKSVGNSRIYSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMP 1782
            +KDQYSLPGIN I+K VGNS+I+SKFDLKSGFHQV MHPDSIEWTAFW PDGLYEWL MP
Sbjct: 1346 HKDQYSLPGINTILKKVGNSKIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMP 1405

Query: 1783 FGLKNAPAVFQRKMDDCFRGTEDFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVL 1962
            FGLKNAP+VFQRKMD+CF+GTEDFIAVYIDDILVFS +E++HAKHLK ML +C+ +GLVL
Sbjct: 1406 FGLKNAPSVFQRKMDECFKGTEDFIAVYIDDILVFSENEKDHAKHLKAMLEICKRNGLVL 1465

Query: 1963 SPSKMK 1980
            SPSKMK
Sbjct: 1466 SPSKMK 1471



 Score =  184 bits (467), Expect = 3e-44
 Identities = 89/139 (64%), Positives = 103/139 (74%)
 Frame = +2

Query: 1943 KNTGSS*AHRK*NIAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLG 2122
            K  G   +  K  IAV +VEFLGA IG+ ++ LQPH+IKKI +  E  L   K +RSWLG
Sbjct: 1459 KRNGLVLSPSKMKIAVQEVEFLGAQIGNQRIRLQPHVIKKIVEFNEAELKEKKGMRSWLG 1518

Query: 2123 LLNYARTYILNLGRLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCY 2302
            +LNYAR YI NLGRLL PLYAKTSPTG++R N QDW LV QIK  V KLPDLELPPE C+
Sbjct: 1519 ILNYARAYIPNLGRLLSPLYAKTSPTGDKRMNAQDWKLVAQIKEEVQKLPDLELPPEDCF 1578

Query: 2303 MILETDRSMDGWGGVCKWK 2359
            +ILETD  M GWGG+CKWK
Sbjct: 1579 IILETDGCMTGWGGICKWK 1597



 Score = 91.3 bits (225), Expect = 6e-15
 Identities = 38/58 (65%), Positives = 50/58 (86%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R K+C+C+LCGQEGHFAR+CP++KR+ KR+AMFE L IPED  I+SV +GE+ SDAI+
Sbjct: 809 RNKRCKCFLCGQEGHFARKCPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMSDAIY 866


>ref|YP_009229919.1| polyprotein [Blackberry Virus F]
 gb|AHX37579.1| polyprotein [Blackberry Virus F]
          Length = 1948

 Score =  605 bits (1559), Expect(3) = 0.0
 Identities = 312/610 (51%), Positives = 417/610 (68%), Gaps = 19/610 (3%)
 Frame = +1

Query: 208  ATTATLKTCIQEEYIYMLGE---LEGGYKPQVRLPEHQLNCLHEWQHNSFVQVQNEGCVC 378
            AT A L+    +E  +++ E   ++ G++ +V L + Q  C H  + N  V+   E C  
Sbjct: 931  ATKAVLEDDFLDELAFVVTEKKEIDYGWRYKVVLTKDQERCRHTLEANCEVEAGKEKCSY 990

Query: 379  CKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQN-LIQEQQYYIAWC 555
            C+  T +R R HC    IT C +C   Y             Q+ S++ LIQE   Y  + 
Sbjct: 991  CQYPTFKRMRCHCKGCGITACPMCSKFYLEYLVTPEPPAPKQYSSKDRLIQELMSYNVYL 1050

Query: 556  EGEISRLN-----KEVEYFRXXXXXXXXXXXXWEDFKGL------RQMGESSSSEHTNV- 699
              E  RL      K +E                E  KG+        + E+SS E T + 
Sbjct: 1051 LSENERLQEIINKKLIEDLEKGRMEAERFDQAKERRKGVVIRTPSGSVHEASSDEETAMA 1110

Query: 700  LYQESILKVSQEGQSGPRLIKNMLYNMKVELDIPRVQRFSVRAILDTGATTCCIDERSIP 879
            + +E+ L  + E  S  R + N LYNM V ++IP V+ FSVRAILDTGATTCC+D+ ++P
Sbjct: 1111 ITEETSLSSTTEAPSHGRKVINRLYNMVVNINIPGVKPFSVRAILDTGATTCCVDKGAVP 1170

Query: 880  ADAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYSFEMTLGDGIQMIIGC 1059
            A+A+EK+   V FSGINSRQ+A+ K K G+M I +N FRIP+TYSF M + DGI+M++GC
Sbjct: 1171 AEALEKSPYAVHFSGINSRQLAEYKFKQGQMEIGENRFRIPFTYSFPMGMKDGIEMLLGC 1230

Query: 1060 NFVKAMQGGVRIEGNTMTFYKNLTVINTSPKVVA---AIEEVNLDEEEYLAIKEAVYYNL 1230
            NF+++M GG+RIEGN +TFYKN+T + T     A   A+EE+ L+ EEY +I+E VYY+L
Sbjct: 1231 NFIRSMYGGLRIEGNLLTFYKNVTTVTTVQNTEASKLAVEELGLEAEEYYSIREMVYYSL 1290

Query: 1231 EVSRKSFVSKFSPLIKQLEEAGFIGEDPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTP 1410
              +   F  +F PL+++L+E G++GE+P++HW+KN+V C L+IINPD T+ DKP+KHVTP
Sbjct: 1291 GHTSPKFQERFKPLLERLKEQGYVGEEPMRHWSKNQVKCKLEIINPDITIQDKPMKHVTP 1350

Query: 1411 QLQKALKRHTQPLLDLKVIRPSKSRHRTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRL 1590
             ++   ++HTQ LL L VIRPSKSRHRT  MIV SGT++D +TG+EVKGKER+VFNYK L
Sbjct: 1351 AMKDQFQKHTQALLKLGVIRPSKSRHRTMAMIVYSGTSVDEKTGKEVKGKERMVFNYKTL 1410

Query: 1591 NDNTNKDQYSLPGINAIIKSVGNSRIYSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEW 1770
            NDNT KDQYSLPGIN I++ +G S+IYSKFDLKSGFHQV M  +SI WTAF  P+GLYEW
Sbjct: 1411 NDNTFKDQYSLPGINTILQRIGKSKIYSKFDLKSGFHQVAMDEESIPWTAFITPEGLYEW 1470

Query: 1771 LAMPFGLKNAPAVFQRKMDDCFRGTEDFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEH 1950
            L MPFGLKNAPA+FQRKMD+CFRGTE+FIAVYIDDILVFS +EE+HAKHL++ML +C+++
Sbjct: 1471 LVMPFGLKNAPAIFQRKMDNCFRGTEEFIAVYIDDILVFSETEEQHAKHLQIMLEICEKN 1530

Query: 1951 GLVLSPSKMK 1980
            GLVLS +KMK
Sbjct: 1531 GLVLSANKMK 1540



 Score =  174 bits (440), Expect(3) = 0.0
 Identities = 82/129 (63%), Positives = 98/129 (75%)
 Frame = +2

Query: 1973 K*NIAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLGLLNYARTYIL 2152
            K  IAV +VEFLGA+I D K+ LQPHIIKKIT   E +L   K LRSWLG+LNYARTYI 
Sbjct: 1538 KMKIAVKEVEFLGAVICDRKIKLQPHIIKKITSVPEDSLKEKKGLRSWLGILNYARTYIP 1597

Query: 2153 NLGRLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCYMILETDRSMD 2332
             LG LLGPLY KTSP G++R    DW LVK+IK  V  LPD+E+PPE+ ++++ETD SM+
Sbjct: 1598 KLGTLLGPLYEKTSPHGDKRMKPSDWELVKKIKAQVQNLPDMEIPPEKAHIVIETDGSME 1657

Query: 2333 GWGGVCKWK 2359
            GWG VCKWK
Sbjct: 1658 GWGAVCKWK 1666



 Score = 70.1 bits (170), Expect(3) = 0.0
 Identities = 27/55 (49%), Positives = 41/55 (74%)
 Frame = +2

Query: 20   KKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAI 184
            +KC+C++CG+EGHFAREC   K N+ R A+ + L+IP+D+ ++SV  G+  SD I
Sbjct: 865  RKCKCFICGEEGHFARECKRGKGNIARAAVLKDLDIPDDYDVVSVDVGDPDSDGI 919


>gb|ANK58542.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  700 bits (1807), Expect = 0.0
 Identities = 342/606 (56%), Positives = 441/606 (72%), Gaps = 9/606 (1%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYIYMLGELEGGYKPQVRLPEHQLNCLHEWQHNSFVQVQNE- 366
            +SE E+      ++    E + MLGE++GGY+PQ++LPE Q+NC+H W HN  + VQ   
Sbjct: 868  ISEGEDGADELQRSLQTLEIVLMLGEIDGGYRPQIKLPEEQMNCVHNWIHNGDIFVQRAV 927

Query: 367  GCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNLIQEQQYYI 546
             C  C+R++++RARIHC   L+T CNLC P+Y                 + +IQEQ  YI
Sbjct: 928  HCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAPSTPINPRRIIQEQHNYI 987

Query: 547  AWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGLRQMGES-------SSSEHTNVLY 705
             WCE EI RLNKEV++++             +D++ L++  +           E  N L 
Sbjct: 988  GWCEVEIERLNKEVKHYKGLYEALLMEKSLRKDYEELKEGDKERRKGIMIQEPEEVNYLG 1047

Query: 706  Q-ESILKVSQEGQSGPRLIKNMLYNMKVELDIPRVQRFSVRAILDTGATTCCIDERSIPA 882
            + E IL    E +   + +KNMLYN  +E +IP V RF VRAILDTGA+TCCI+E ++P 
Sbjct: 1048 EDEKILAAGTEEKK--KFVKNMLYNFDIEFEIPDVSRFRVRAILDTGASTCCINEGAVPK 1105

Query: 883  DAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYSFEMTLGDGIQMIIGCN 1062
            +A+E++   VQ +G+NS Q    KLK GRM I  N FRIP+TYS  + +GD IQMI+GCN
Sbjct: 1106 EALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCN 1165

Query: 1063 FVKAMQGGVRIEGNTMTFYKNLTVINTSPKVVAAIEEVNLDEEEYLAIKEAVYYNLEVSR 1242
            F++AM GGVRIEGN +TFYKNLT I+TSP+V     +  + EEEYL ++E V  N+  SR
Sbjct: 1166 FIRAMYGGVRIEGNEVTFYKNLTRISTSPEVSVNSLDEEVCEEEYLQVQEMVICNIGESR 1225

Query: 1243 KSFVSKFSPLIKQLEEAGFIGEDPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQK 1422
            +SF+ KF PL+++L+EAGFIGE+PL+HW KN + C LDI NPDF + D+PLK++T Q+++
Sbjct: 1226 ESFLKKFRPLLEELKEAGFIGENPLQHWKKNGILCQLDIKNPDFIIEDRPLKNLTSQMKE 1285

Query: 1423 ALKRHTQPLLDLKVIRPSKSRHRTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNT 1602
            + K+H + LLDL VIR SKSRHRTT M+VNSGTT+DP+TG+E+KGKER+VFNYKRLND T
Sbjct: 1286 SFKKHIKVLLDLGVIRASKSRHRTTAMLVNSGTTVDPKTGKEIKGKERMVFNYKRLNDIT 1345

Query: 1603 NKDQYSLPGINAIIKSVGNSRIYSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMP 1782
            +KDQYSLPGIN I+K VGNS I+SKFDLKSGFHQV MHPDSIEWTAFW PDGLYEWL MP
Sbjct: 1346 HKDQYSLPGINTILKKVGNSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMP 1405

Query: 1783 FGLKNAPAVFQRKMDDCFRGTEDFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVL 1962
            FGLKNAP+VFQRKMD+CF+GTEDFIAVYIDDILVFS +E++HAKHLK ML +C+ +GLVL
Sbjct: 1406 FGLKNAPSVFQRKMDECFKGTEDFIAVYIDDILVFSENEKDHAKHLKAMLEICKRNGLVL 1465

Query: 1963 SPSKMK 1980
            SPSKMK
Sbjct: 1466 SPSKMK 1471



 Score =  181 bits (459), Expect = 3e-43
 Identities = 88/139 (63%), Positives = 102/139 (73%)
 Frame = +2

Query: 1943 KNTGSS*AHRK*NIAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLG 2122
            K  G   +  K  IAV +VEFLGA IG+ ++ LQPH+IKKI +  E  L   K +RSWL 
Sbjct: 1459 KRNGLVLSPSKMKIAVQEVEFLGAQIGNQRIRLQPHVIKKIVEFNEAELKEKKGMRSWLE 1518

Query: 2123 LLNYARTYILNLGRLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCY 2302
            +LNYAR YI NLGRLL PLYAKTSPTG++R N QDW LV QIK  V KLPDLELPPE C+
Sbjct: 1519 ILNYARAYIPNLGRLLSPLYAKTSPTGDKRMNAQDWKLVAQIKEEVQKLPDLELPPEDCF 1578

Query: 2303 MILETDRSMDGWGGVCKWK 2359
            +ILETD  M GWGG+CKWK
Sbjct: 1579 IILETDGCMTGWGGICKWK 1597



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 39/58 (67%), Positives = 50/58 (86%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R K+C+C+LCGQEGHFARECP++KR+ KR+AMFE L IPED  I+SV +GE+ SDAI+
Sbjct: 809 RNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMSDAIY 866


>gb|ASG91848.1| polyprotein [Cacao swollen shoot virus]
          Length = 1837

 Score =  587 bits (1514), Expect(3) = 0.0
 Identities = 312/639 (48%), Positives = 406/639 (63%), Gaps = 43/639 (6%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYIYMLGELEGGY--------KPQVRLPEHQLNCLHEWQHNS 345
            +SENE      L   + +E ++M+ E +  Y           VR+   Q +CLH+W+HN 
Sbjct: 842  ISENENGEE--LDEEVVQEKVFMMKEEDQSYWLGKTNHWTAMVRVSSQQYHCLHQWEHNK 899

Query: 346  FVQ-VQNEGCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNL 522
             +  V +  C  CK+ T  R+RIHC    +T C +C P Y              F +  L
Sbjct: 900  EITTVAHINCHFCKQPTQLRSRIHCPTCKLTSCFMCAPIYCNTTVQQQPKPPTPFNTHTL 959

Query: 523  IQEQQYYIAWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGLR----------QMGE 672
            +Q+Q  YI W EGE  RL + VE+++              D + L           Q+ E
Sbjct: 960  LQQQAAYIQWLEGENQRLTEAVEFYKKEAADLRLEKELERDRQSLEPKMKERGKKVQIQE 1019

Query: 673  SSSSEHTNVLYQESILKVSQEGQSGPRLIK------NMLYNMKVELDIPRVQR-FSVRAI 831
             S  EH   L +++I ++      G + +K      NMLYN+ V L IP V R   V+AI
Sbjct: 1020 PSDDEHIAYLEEDTISRIIGHTMEGQQEVKKPAQRGNMLYNLDVVLIIPEVGRPIKVKAI 1079

Query: 832  LDTGATTCCIDERSIPADAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTY 1011
            LDTGATTCCID  S+P  A+E+N  LVQF GINS Q  D KLK GRM I ++ FRIPY Y
Sbjct: 1080 LDTGATTCCIDINSVPKAAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPYCY 1139

Query: 1012 SFEMTLGDGIQMIIGCNFVKAMQGGVRIEGNTMTFYKNLTVINT--SPKVVAAIEEVNLD 1185
            +F ++LGDGI+MI+GCNF++ M GG+RIEG+T+TFYKN+T I T  +  +V       L 
Sbjct: 1140 AFPLSLGDGIEMILGCNFIRGMYGGLRIEGHTITFYKNVTTIQTRLAAVMVGGTTTSELG 1199

Query: 1186 EEEY---LAIKEAVYYNLEVSRK--SFVS----------KFSPLIKQLEEAGFIGEDPLK 1320
            EE+      IKE   ++ E  ++  S V+          K   L+++L++ GFIGE+P++
Sbjct: 1200 EEDMDPIFPIKETEEFDSEAHQQIVSHVTAQAQQQKLDPKLQQLMERLKDQGFIGENPMQ 1259

Query: 1321 HWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQKALKRHTQPLLDLKVIRPSKSRHRTTT 1500
            HWAKNK+ C LDI NPD  + DKP+KH+TP ++K  ++H + LLD+ VIRPSKS+HRTT 
Sbjct: 1260 HWAKNKILCRLDIKNPDLIIEDKPIKHLTPAMEKQFQKHVKALLDIGVIRPSKSKHRTTA 1319

Query: 1501 MIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNTNKDQYSLPGINAIIKSVGNSRIYSKF 1680
             IV SGT IDP T + + GKER+VFNYKRLNDNT KDQYSLPGI  I+K VGN +I+SKF
Sbjct: 1320 FIVESGTVIDPVTKKTIHGKERMVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKKIFSKF 1379

Query: 1681 DLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMPFGLKNAPAVFQRKMDDCFRGTEDFIA 1860
            DLKSGFHQV M  +SI WTAFW P GLYEWL MPFGLKNAPAVFQRKMD CF+GTE+FIA
Sbjct: 1380 DLKSGFHQVAMAEESIPWTAFWVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKGTEEFIA 1439

Query: 1861 VYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVLSPSKM 1977
            VYIDDILVFS +  EH KH++VML +CQE+GLVLSP+K+
Sbjct: 1440 VYIDDILVFSETMAEHTKHIEVMLTICQENGLVLSPNKI 1478



 Score =  163 bits (413), Expect(3) = 0.0
 Identities = 75/126 (59%), Positives = 95/126 (75%)
 Frame = +2

Query: 1982 IAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLGLLNYARTYILNLG 2161
            +A  ++EFLG II   ++ LQPH+IKKI    E  L T K LRS+LGLLNYAR YI NLG
Sbjct: 1480 LAQREIEFLGTIISQGQMKLQPHVIKKIVDKAEMELETTKGLRSFLGLLNYARIYIPNLG 1539

Query: 2162 RLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCYMILETDRSMDGWG 2341
            + L PLYAKTSPTGE+++N QDW L+K+IK  V KLP+L +PP +C +I+E+D  M+GWG
Sbjct: 1540 KKLSPLYAKTSPTGEKKFNRQDWHLIKEIKAMVQKLPNLAIPPARCCIIIESDGCMEGWG 1599

Query: 2342 GVCKWK 2359
             VCKWK
Sbjct: 1600 AVCKWK 1605



 Score = 95.1 bits (235), Expect(3) = 0.0
 Identities = 40/58 (68%), Positives = 50/58 (86%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R KKC+CYLCG EGHFARECP+ KR+VKRVA+FE +N+PE F I+SV +GE+ SDAI+
Sbjct: 783 RNKKCKCYLCGDEGHFARECPNNKRDVKRVAIFEGINLPEGFDIVSVEEGEDDSDAIY 840


>gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1789

 Score =  699 bits (1803), Expect = 0.0
 Identities = 336/606 (55%), Positives = 441/606 (72%), Gaps = 9/606 (1%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYIYMLGELEGGYKPQVRLPEHQLNCLHEWQHNSFVQVQNE- 366
            +SE E+      ++    E + MLGE++GGY+PQ++LP+ Q NC H W HN  + V    
Sbjct: 883  ISEGEDDVEELQRSLQTLELVLMLGEVDGGYRPQIKLPDEQFNCAHNWVHNGEILVPKAI 942

Query: 367  GCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNLIQEQQYYI 546
             C  CKR +++RARIHC   L+T CNLC P+Y                 + +IQEQ  YI
Sbjct: 943  KCSFCKRDSLKRARIHCPLCLLTACNLCGPYYLKIEVPVDPAPSTPLNPRRIIQEQHNYI 1002

Query: 547  AWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGLRQMGESSSSEHTNVLYQESILKV 726
             WCE EI RLNKEV++++             +D++ L++ G+    +   +   E I  +
Sbjct: 1003 GWCEAEIERLNKEVKHYKGLYEALLTEKALKKDYEDLKE-GDIKRGKGIMIQETEDINYL 1061

Query: 727  SQE-------GQSGPRLIKNMLYNMKVELDIPRVQRFSVRAILDTGATTCCIDERSIPAD 885
             +         +   RL+KNMLYN  +E +IP V +F VRAILDTGA+TCC++E ++P +
Sbjct: 1062 GENEKALIAGAEERKRLVKNMLYNFDIEFEIPDVPKFKVRAILDTGASTCCVNEGAVPKE 1121

Query: 886  AVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYSFEMTLGDGIQMIIGCNF 1065
            A+E +   VQ +G+NS Q    KLK GRM I  N+FRIP+TYS  + +GD IQMI+GCNF
Sbjct: 1122 AIEDSPYEVQLNGVNSVQKTKKKLKYGRMMIGMNSFRIPFTYSLPLVIGDNIQMIVGCNF 1181

Query: 1066 VKAMQGGVRIEGNTMTFYKNLTVINTSPKV-VAAIEEVNLDEEEYLAIKEAVYYNLEVSR 1242
            ++AM GGVRIEGN +TFYKNLT I+TSP+V V ++EE  + EEEYL ++E V  N+  SR
Sbjct: 1182 IRAMYGGVRIEGNEVTFYKNLTRISTSPEVTVNSLEEEEVCEEEYLQVQEMVICNIGESR 1241

Query: 1243 KSFVSKFSPLIKQLEEAGFIGEDPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQK 1422
            +SF+ +F PLI++L+EAG+IGE+PL+HW+KN V C LDI NPDF + D+PLK VTPQ+++
Sbjct: 1242 ESFLKRFKPLIEELKEAGYIGENPLQHWSKNGVLCQLDIKNPDFIIEDRPLKSVTPQMKE 1301

Query: 1423 ALKRHTQPLLDLKVIRPSKSRHRTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNT 1602
            + K+H + LLDL+VIRPSKSRHRTT M+VNSGTT+DP+TG+E KGKER+VFNYKRLND T
Sbjct: 1302 SFKKHVKALLDLRVIRPSKSRHRTTAMLVNSGTTVDPKTGKETKGKERMVFNYKRLNDIT 1361

Query: 1603 NKDQYSLPGINAIIKSVGNSRIYSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMP 1782
            +KDQYSLPGIN I+K +GNS+I+SKFDLKSGFHQV MHPDSIEWTAFW PDGLYEWL MP
Sbjct: 1362 HKDQYSLPGINTILKRIGNSKIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMP 1421

Query: 1783 FGLKNAPAVFQRKMDDCFRGTEDFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVL 1962
            FGLKNAP++FQRKM +CF GTE+FIAVYIDDILVFS  E+ HAKHL +ML +C+++GLVL
Sbjct: 1422 FGLKNAPSIFQRKMGECFNGTEEFIAVYIDDILVFSEDEKSHAKHLSIMLEICKKNGLVL 1481

Query: 1963 SPSKMK 1980
            SP+KM+
Sbjct: 1482 SPTKME 1487



 Score =  179 bits (453), Expect = 2e-42
 Identities = 88/139 (63%), Positives = 101/139 (72%)
 Frame = +2

Query: 1943 KNTGSS*AHRK*NIAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLG 2122
            K  G   +  K  IAV +VEFLGA IG+ K+ LQPH+IKKI +  E  L   K +RSWLG
Sbjct: 1475 KKNGLVLSPTKMEIAVQEVEFLGAQIGNQKIKLQPHVIKKIVEFNEAELKEKKGMRSWLG 1534

Query: 2123 LLNYARTYILNLGRLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCY 2302
            +LNYAR YI NLGRLL PLYAKTSPTG++  N QDW LV QIK  V KLPDLE+PPE  +
Sbjct: 1535 ILNYARAYIPNLGRLLSPLYAKTSPTGDKGMNSQDWKLVAQIKEEVQKLPDLEIPPEDSF 1594

Query: 2303 MILETDRSMDGWGGVCKWK 2359
            +ILETD  M GWGGVCKWK
Sbjct: 1595 IILETDGCMTGWGGVCKWK 1613



 Score = 90.9 bits (224), Expect = 8e-15
 Identities = 37/58 (63%), Positives = 50/58 (86%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R K+C+C+LCGQEGHFARECP+++++ KR+AMFE L +PED  I+SV +GEE SDAI+
Sbjct: 824 RNKRCKCFLCGQEGHFARECPNDRKSTKRMAMFENLELPEDCDIVSVQEGEELSDAIY 881


>gb|ANK58548.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  697 bits (1799), Expect = 0.0
 Identities = 341/606 (56%), Positives = 441/606 (72%), Gaps = 9/606 (1%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYIYMLGELEGGYKPQVRLPEHQLNCLHEWQHNSFVQVQNE- 366
            +SE E+      ++    E + MLGE++GGY+PQ++LPE Q+NC+H W HN  + VQ   
Sbjct: 868  ISEGEDGADELQRSLQTLEIVLMLGEIDGGYRPQIKLPEEQMNCVHNWIHNGDIFVQRAV 927

Query: 367  GCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNLIQEQQYYI 546
             C  C+R++++RARIHC   L+T CNLC P+Y                 + +IQEQ  YI
Sbjct: 928  HCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAPSTPINPRRIIQEQHNYI 987

Query: 547  AWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGLRQMGES-------SSSEHTNVLY 705
             WCE EI RLNKEV++++             +D++ L++  +           E  N L 
Sbjct: 988  GWCEVEIERLNKEVKHYKGLYEALLMEKSLRKDYEELKEGDKERRKGIMIQEPEEVNYLG 1047

Query: 706  Q-ESILKVSQEGQSGPRLIKNMLYNMKVELDIPRVQRFSVRAILDTGATTCCIDERSIPA 882
            + E IL    E +   + +KNMLYN  +E +IP V RF VRAILDTGA+TCCI+E ++P 
Sbjct: 1048 EDEKILAAGTEEKK--KFVKNMLYNFDIEFEIPDVSRFRVRAILDTGASTCCINEGAVPK 1105

Query: 883  DAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYSFEMTLGDGIQMIIGCN 1062
            +A+E++   VQ +G+NS Q    KLK GRM I  N FRIP+TYS  + +GD IQMI+GCN
Sbjct: 1106 EALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCN 1165

Query: 1063 FVKAMQGGVRIEGNTMTFYKNLTVINTSPKVVAAIEEVNLDEEEYLAIKEAVYYNLEVSR 1242
            F++AM GGVRIEGN +TFYKNLT I+TSP+V     +  + EEEYL ++E V  N+  SR
Sbjct: 1166 FIRAMYGGVRIEGNEVTFYKNLTRISTSPEVSVNSLDEEVCEEEYLQVQEMVICNIGESR 1225

Query: 1243 KSFVSKFSPLIKQLEEAGFIGEDPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQK 1422
            +SF+ KF PL+++L+EAGFIGE+PL+HW KN + C LDI NPDF + D+PLK++TPQ+++
Sbjct: 1226 ESFLKKFRPLLEELKEAGFIGENPLQHWKKNGILCQLDIKNPDFIIEDRPLKNLTPQMKE 1285

Query: 1423 ALKRHTQPLLDLKVIRPSKSRHRTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNT 1602
            + K+H + LLDL VIR SKSRHRTT M+VNSGTT+DP+TG+E+K KER+VFNYKRLND T
Sbjct: 1286 SFKKHIKVLLDLGVIRASKSRHRTTAMLVNSGTTVDPKTGKEIKRKERMVFNYKRLNDIT 1345

Query: 1603 NKDQYSLPGINAIIKSVGNSRIYSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMP 1782
            +KDQYSLPGIN I+K VGNS+I+SKFDLKSGFHQV MHPDSIEWTAFW PDGLYEWL MP
Sbjct: 1346 HKDQYSLPGINTILKKVGNSKIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMP 1405

Query: 1783 FGLKNAPAVFQRKMDDCFRGTEDFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVL 1962
            FGLKNAP+VFQRKMD+CF+GTEDFIAVYIDDILVFS +E++ AKHLK ML +C+ +GLVL
Sbjct: 1406 FGLKNAPSVFQRKMDECFKGTEDFIAVYIDDILVFSENEKDLAKHLKAMLEICKRNGLVL 1465

Query: 1963 SPSKMK 1980
            SPSKMK
Sbjct: 1466 SPSKMK 1471



 Score =  175 bits (443), Expect = 3e-41
 Identities = 86/139 (61%), Positives = 100/139 (71%)
 Frame = +2

Query: 1943 KNTGSS*AHRK*NIAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLG 2122
            K  G   +  K  IAV +VEFLGA IG+ ++ LQPH+IKKI +  E  L   K +RSWL 
Sbjct: 1459 KRNGLVLSPSKMKIAVQEVEFLGAQIGNQRIRLQPHVIKKIVEFNEAELKEKKGMRSWLE 1518

Query: 2123 LLNYARTYILNLGRLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCY 2302
            +LNYAR YI NLGRLL PL AKTSPTG++R N QDW LV QIK  V KLPDLELPPE C+
Sbjct: 1519 ILNYARAYIPNLGRLLSPLSAKTSPTGDKRMNAQDWKLVAQIKEEVQKLPDLELPPEDCF 1578

Query: 2303 MILETDRSMDGWGGVCKWK 2359
            +ILET   M GWGG+CKWK
Sbjct: 1579 IILETHGCMTGWGGICKWK 1597



 Score = 91.3 bits (225), Expect = 6e-15
 Identities = 38/58 (65%), Positives = 50/58 (86%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R K+C+C+LCGQEGHFAR+CP++KR+ KR+AMFE L IPED  I+SV +GE+ SDAI+
Sbjct: 809 RNKRCKCFLCGQEGHFARKCPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMSDAIY 866


>gb|ANK58539.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  696 bits (1797), Expect = 0.0
 Identities = 341/606 (56%), Positives = 441/606 (72%), Gaps = 9/606 (1%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYIYMLGELEGGYKPQVRLPEHQLNCLHEWQHNSFVQVQNE- 366
            +SE E+      ++    E + MLGE++GGY+PQ++LPE Q+NC+H W HN  + VQ   
Sbjct: 868  ISEGEDGADELQRSLQTLEIVLMLGEIDGGYRPQIKLPEEQMNCVHNWIHNGDIFVQRAV 927

Query: 367  GCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNLIQEQQYYI 546
             C  C+R++++RARIHC   L+T CNLC P+Y                 + +IQEQ  YI
Sbjct: 928  HCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAPSTPINPRRIIQEQHNYI 987

Query: 547  AWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGLRQMGES-------SSSEHTNVLY 705
             WCE EI RLNKEV++++             +D++ L++  +           E  N L 
Sbjct: 988  GWCEVEIERLNKEVKHYKGLYEALLMEKSLRKDYEELKEGDKERRKGILIQEPEEVNYLG 1047

Query: 706  Q-ESILKVSQEGQSGPRLIKNMLYNMKVELDIPRVQRFSVRAILDTGATTCCIDERSIPA 882
            + E IL    E +   + +KNMLYN  +E +IP V RF VRAILDTGA+TCCI+E ++P 
Sbjct: 1048 EDEKILAAGTEEKK--KFVKNMLYNFDIESEIPDVSRFRVRAILDTGASTCCINEGAVPK 1105

Query: 883  DAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYSFEMTLGDGIQMIIGCN 1062
            +A+E++   VQ +G+NS Q    KLK GRM I  N FRIP+TYS  + +GD IQMI+GCN
Sbjct: 1106 EALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCN 1165

Query: 1063 FVKAMQGGVRIEGNTMTFYKNLTVINTSPKVVAAIEEVNLDEEEYLAIKEAVYYNLEVSR 1242
            F++AM GGVRIEGN +TFYKNLT I+TSP+V     +  + EEEYL ++E V  N+  SR
Sbjct: 1166 FIRAMYGGVRIEGNEVTFYKNLTRISTSPEVSVNSLDEEVCEEEYLQVQEMVICNIGESR 1225

Query: 1243 KSFVSKFSPLIKQLEEAGFIGEDPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQK 1422
            +SF+ KF PL+++L+EAGFIGE+PL+HW KN + C LDI NPDF + D+PLK++T Q+++
Sbjct: 1226 ESFLKKFRPLLEELKEAGFIGENPLQHWKKNGILCQLDIKNPDFIIEDRPLKNLTSQMKE 1285

Query: 1423 ALKRHTQPLLDLKVIRPSKSRHRTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNT 1602
            + K+H + LLDL VIR SKSRHRTT M+VNSGTT+DP+TG+E+KGKER+VFNYKRLND T
Sbjct: 1286 SFKKHIKVLLDLGVIRASKSRHRTTAMLVNSGTTVDPKTGKEIKGKERMVFNYKRLNDIT 1345

Query: 1603 NKDQYSLPGINAIIKSVGNSRIYSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMP 1782
            +KDQYSLPGIN I+K VGNS+I+SKFDLKSGFHQV MHPDSIEWTAFW PDGLYEWL MP
Sbjct: 1346 HKDQYSLPGINTILKKVGNSKIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMP 1405

Query: 1783 FGLKNAPAVFQRKMDDCFRGTEDFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVL 1962
            FGLKNAP+VFQRKMD+CF+GTEDFIAVYIDDILVFS +E++ AKHLK ML +C+ +GLVL
Sbjct: 1406 FGLKNAPSVFQRKMDECFKGTEDFIAVYIDDILVFSENEKDLAKHLKAMLEICKRNGLVL 1465

Query: 1963 SPSKMK 1980
            SPSKMK
Sbjct: 1466 SPSKMK 1471



 Score =  181 bits (460), Expect = 2e-43
 Identities = 88/139 (63%), Positives = 102/139 (73%)
 Frame = +2

Query: 1943 KNTGSS*AHRK*NIAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLG 2122
            K  G   +  K  IAV +VEFLGA IG+ ++ LQPH+IKKI +  E  L   K +RSWLG
Sbjct: 1459 KRNGLVLSPSKMKIAVQEVEFLGAQIGNQRIRLQPHVIKKIVEFNEAELKEKKGMRSWLG 1518

Query: 2123 LLNYARTYILNLGRLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCY 2302
            +LNYAR YI NLGRLL PLYAKTSPTG++R N QDW LV QIK  V KLPDLELPPE C+
Sbjct: 1519 ILNYARAYIPNLGRLLSPLYAKTSPTGDKRMNAQDWKLVAQIKEEVQKLPDLELPPEDCF 1578

Query: 2303 MILETDRSMDGWGGVCKWK 2359
            +ILET   M GWGG+CKWK
Sbjct: 1579 IILETHGCMTGWGGICKWK 1597



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 39/58 (67%), Positives = 50/58 (86%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R K+C+C+LCGQEGHFARECP++KR+ KR+AMFE L IPED  I+SV +GE+ SDAI+
Sbjct: 809 RNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMSDAIY 866


>ref|NP_041734.1| polyprotein [Cacao swollen shoot virus]
 gb|AAA03171.1| polyprotein [Cacao swollen shoot virus]
          Length = 1834

 Score =  582 bits (1501), Expect(3) = 0.0
 Identities = 310/643 (48%), Positives = 405/643 (62%), Gaps = 47/643 (7%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYIYMLGELEGGY--------KPQVRLPEHQLNCLHEWQHNS 345
            +SENE+     L T +  E ++M+ E +  Y           VR+   Q +C+H+W+HN 
Sbjct: 841  ISENEDGE---LDTEVVHEKVFMMREEDQSYWLGKTNHWTAMVRVSSQQYHCMHQWEHNK 897

Query: 346  -FVQVQNEGCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNL 522
              + V +  C  CK+ T  R+RIHC    +T C +C P Y              F +  L
Sbjct: 898  EILVVAHINCHFCKQPTQLRSRIHCPTCQLTSCFMCAPIYCNMIVQQQPKPPVPFNTHTL 957

Query: 523  IQEQQYYIAWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGLR----------QMGE 672
            +Q+Q  YI W E E  RL + VE+++             +D + L           Q+ +
Sbjct: 958  LQQQAAYIQWLEKENQRLTEAVEFYKKEAEELRLERDLEQDRRSLEPTLLDKGKKVQILD 1017

Query: 673  SSSSEHTNVLYQESILKV---SQEGQSGPRLIK--NMLYNMKVELDIPRVQR-FSVRAIL 834
                +HT  L +++I +V   + E Q   + +K  NMLYN+ V L IP V R   V+AIL
Sbjct: 1018 PDEDQHTAYLEEDTISRVIGHTVEQQEVRKPVKKGNMLYNLDVVLHIPEVGRPIKVKAIL 1077

Query: 835  DTGATTCCIDERSIPADAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYS 1014
            DTGATTCCI+  S+P  A+E+N  LVQF GINS Q  D KLK GRM I ++ FRIPY Y+
Sbjct: 1078 DTGATTCCININSVPQTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRIPYCYA 1137

Query: 1015 FEMTLGDGIQMIIGCNFVKAMQGGVRIEGNTMTFYKNLTVINTSPKVV----------AA 1164
            F ++LGDGI+MI+GCNF++ M GG+RIEG+T+TFYKN+T I T    V            
Sbjct: 1138 FPLSLGDGIEMILGCNFIRGMYGGLRIEGHTITFYKNVTTIQTRLAAVMVGGTTASELGG 1197

Query: 1165 IEEVNLDEEEYLAIKEAVYYNLEVSRK--SFVS----------KFSPLIKQLEEAGFIGE 1308
             EE   D E    + E   ++ E  ++  S V+          K   L+ QL++ GFIGE
Sbjct: 1198 GEESKSDSESMFDLSETEEFDSETHQQIVSHVAAQAQQQKLDPKLQQLMVQLQDQGFIGE 1257

Query: 1309 DPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQKALKRHTQPLLDLKVIRPSKSRH 1488
            +P++HWAKNK+ C LDI NPD  + DKP+KH+TP ++K  ++H + LLD+ VIRPSKS+H
Sbjct: 1258 NPMQHWAKNKILCRLDIKNPDLIIEDKPIKHLTPAMEKQFQKHIKALLDIGVIRPSKSKH 1317

Query: 1489 RTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNTNKDQYSLPGINAIIKSVGNSRI 1668
            RTT  IV SGT IDP T + + GKERLVFNYKRLNDNT KDQYSLPGI  I+K VGN ++
Sbjct: 1318 RTTAFIVESGTVIDPVTKKTIHGKERLVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKKV 1377

Query: 1669 YSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMPFGLKNAPAVFQRKMDDCFRGTE 1848
            +SKFDLKSGFHQV M  +SI WTAFW P GLYEWL MPFGLKNAPAVFQRKMD CF+GTE
Sbjct: 1378 FSKFDLKSGFHQVAMAEESIPWTAFWVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKGTE 1437

Query: 1849 DFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVLSPSKM 1977
            +FIAVYIDDILVFS +  EH KH+ +ML++CQE+GLVLSPSK+
Sbjct: 1438 EFIAVYIDDILVFSENMAEHTKHIGIMLKICQENGLVLSPSKI 1480



 Score =  162 bits (410), Expect(3) = 0.0
 Identities = 75/126 (59%), Positives = 94/126 (74%)
 Frame = +2

Query: 1982 IAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLGLLNYARTYILNLG 2161
            +A  ++EFLG +I   ++ LQ H+IKKI       L T K LRS+LGLLNYAR YI NLG
Sbjct: 1482 LAQREIEFLGTVISQGQMKLQAHVIKKIVNKANIELETTKGLRSFLGLLNYARIYIPNLG 1541

Query: 2162 RLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCYMILETDRSMDGWG 2341
            R L PLYAKTSPTGE+R+N QDW L+K+IK  V KLP+L +PP +CY+I+E+D  M+GWG
Sbjct: 1542 RKLSPLYAKTSPTGEKRFNRQDWHLIKEIKDMVQKLPNLAIPPARCYIIIESDGCMEGWG 1601

Query: 2342 GVCKWK 2359
             VCKWK
Sbjct: 1602 AVCKWK 1607



 Score = 94.7 bits (234), Expect(3) = 0.0
 Identities = 39/58 (67%), Positives = 52/58 (89%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R KKC+CYLCG EGHFARECP+++R+VKRVA+FE +++PE F I+SV +GEE+SDAI+
Sbjct: 782 RNKKCKCYLCGDEGHFARECPNQRRDVKRVAIFEGIDLPEGFDIVSVEEGEEESDAIY 839


>gb|ANK58545.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  693 bits (1789), Expect = 0.0
 Identities = 340/606 (56%), Positives = 439/606 (72%), Gaps = 9/606 (1%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYIYMLGELEGGYKPQVRLPEHQLNCLHEWQHNSFVQVQNE- 366
            +SE E+      ++    E + MLGE++GGY+PQ++LPE Q+NC+H W HN  + VQ   
Sbjct: 868  ISEGEDGADELQRSLQTLEIVLMLGEIDGGYRPQIKLPEEQMNCVHNWIHNGDIFVQRAV 927

Query: 367  GCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNLIQEQQYYI 546
             C  C+R++++RARIHC   L+T CNLC P+Y                 + +IQEQ  YI
Sbjct: 928  HCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAPSTPINPRRIIQEQHNYI 987

Query: 547  AWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGLRQMGES-------SSSEHTNVLY 705
             WCE EI RLNKEV +++             +D++ L +  +           E  N L 
Sbjct: 988  GWCEVEIERLNKEVMHYKGLYEALLMETSLRKDYEELIEGDKERRKGIMIQEPEEVNYLG 1047

Query: 706  Q-ESILKVSQEGQSGPRLIKNMLYNMKVELDIPRVQRFSVRAILDTGATTCCIDERSIPA 882
            + E IL    E +   + +KNMLYN  +E +IP V RF VRAILDTGA+TCCI+E ++P 
Sbjct: 1048 EDEKILAAGTEEKK--KFVKNMLYNSDIESEIPDVSRFRVRAILDTGASTCCINEGAVPK 1105

Query: 883  DAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYSFEMTLGDGIQMIIGCN 1062
            +A+E++   VQ +G+NS Q    KLK GRM I  N FRIP+TYS  + +GD IQMI+GCN
Sbjct: 1106 EALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCN 1165

Query: 1063 FVKAMQGGVRIEGNTMTFYKNLTVINTSPKVVAAIEEVNLDEEEYLAIKEAVYYNLEVSR 1242
            F++AM GGVRIEGN +TFYKNLT I+TSP+V     +  + EEEYL ++E V  N+  SR
Sbjct: 1166 FIRAMYGGVRIEGNEVTFYKNLTRISTSPEVSVNSLDEEVCEEEYLQVQEMVICNIGESR 1225

Query: 1243 KSFVSKFSPLIKQLEEAGFIGEDPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQK 1422
            +SF+ KF PL+++L+EAGFIGE+PL+HW KN + C LDI NPDF + D+PLK++TPQ+++
Sbjct: 1226 ESFLKKFRPLLEELKEAGFIGENPLQHWKKNGILCQLDIKNPDFIIEDRPLKNLTPQMKE 1285

Query: 1423 ALKRHTQPLLDLKVIRPSKSRHRTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNT 1602
            + K+H + LLDL VIR SKSRHRTT M+VNSGTT+DP+TG+E+K +ER+VFNYKRLND T
Sbjct: 1286 SFKKHIKVLLDLGVIRASKSRHRTTAMLVNSGTTVDPKTGKEIKREERMVFNYKRLNDIT 1345

Query: 1603 NKDQYSLPGINAIIKSVGNSRIYSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMP 1782
            +KDQYSLPGIN I+K VGNS I+SKFDLKSGFHQV MHPDSIEWTAFW PDGLYEWL MP
Sbjct: 1346 HKDQYSLPGINTILKKVGNSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMP 1405

Query: 1783 FGLKNAPAVFQRKMDDCFRGTEDFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVL 1962
            FGLKNAP+VFQRKMD+CF+GTEDFIAVYIDDILVFS +E++HAKHLK +L +C+ +GLVL
Sbjct: 1406 FGLKNAPSVFQRKMDECFKGTEDFIAVYIDDILVFSENEKDHAKHLKALLEICKRNGLVL 1465

Query: 1963 SPSKMK 1980
            SPSKMK
Sbjct: 1466 SPSKMK 1471



 Score =  177 bits (448), Expect = 7e-42
 Identities = 87/139 (62%), Positives = 100/139 (71%)
 Frame = +2

Query: 1943 KNTGSS*AHRK*NIAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLG 2122
            K  G   +  K  IAV +VEFLGA IG+ ++ LQPH+IKKI +  E  L   K +RSWL 
Sbjct: 1459 KRNGLVLSPSKMKIAVQEVEFLGAQIGNQRIRLQPHVIKKIVEFNEAELKEKKGMRSWLE 1518

Query: 2123 LLNYARTYILNLGRLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCY 2302
            +LNYAR YI NLGRLL PL AKTSPTG++R N QDW LV QIK  V KLPDLELPPE C+
Sbjct: 1519 ILNYARAYIPNLGRLLSPLSAKTSPTGDKRMNAQDWKLVAQIKEEVQKLPDLELPPEDCF 1578

Query: 2303 MILETDRSMDGWGGVCKWK 2359
             ILETD  M GWGG+CKWK
Sbjct: 1579 TILETDGCMTGWGGICKWK 1597



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 39/58 (67%), Positives = 50/58 (86%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R K+C+C+LCGQEGHFARECP++KR+ KR+AMFE L IPED  I+SV +GE+ SDAI+
Sbjct: 809 RNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMSDAIY 866


>gb|ATZ69449.1| ORF3 polyprotein [Cacao swollen shoot virus]
          Length = 1841

 Score =  582 bits (1499), Expect(3) = 0.0
 Identities = 306/641 (47%), Positives = 410/641 (63%), Gaps = 45/641 (7%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYIYMLGELEGGY--------KPQVRLPEHQLNCLHEWQHNS 345
            +SENE      L   + +E I+M+ E +  Y           VR+   Q +C+H+W+HN 
Sbjct: 843  ISENENGEE--LDAEVVQEKIFMMKEEDQSYWLGKTNHWTAMVRVSSQQYHCMHQWEHNK 900

Query: 346  FVQV-QNEGCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNL 522
             + V  +  C  CK+ T  R+RIHC    +T C +C P Y              F +  L
Sbjct: 901  EIMVVAHINCHFCKQPTQLRSRIHCPTCKLTSCFMCAPIYCNTTVQQQPKPPAPFNTNTL 960

Query: 523  IQEQQYYIAWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGL--------RQMGESS 678
            +Q+Q  YI W EGE  RL + VE+++             +D + L        +++    
Sbjct: 961  LQQQAAYIQWLEGENQRLTEAVEFYKQEAANLKLEKDLEKDRRELEPKIQDRGKKVQIYE 1020

Query: 679  SSEHTNVLYQESILKV----SQEGQSGPRLIK--NMLYNMKVELDIPRVQR-FSVRAILD 837
            SSEHT  L ++++ ++    ++E +   + +K  NMLYN+ V L IP V R   V+AILD
Sbjct: 1021 SSEHTAYLEEDTVCRIIGHTTEEQKEVTKPVKRGNMLYNLDVVLHIPEVGRPIKVKAILD 1080

Query: 838  TGATTCCIDERSIPADAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYSF 1017
            TGATTCCI+  S+P  A+E+N  LVQF GINS Q  D KLK GRM I ++ FRIPY Y+F
Sbjct: 1081 TGATTCCINVNSVPKTAIEQNTFLVQFRGINSTQSVDQKLKYGRMTISNHQFRIPYCYAF 1140

Query: 1018 EMTLGDGIQMIIGCNFVKAMQGGVRIEGNTMTFYKNLTVINTSPKVVAA----------- 1164
             ++LGDGI+MI+GCNF++ M GG+RIEG+T+TFYKN+T I T    V             
Sbjct: 1141 PLSLGDGIEMILGCNFIRGMYGGLRIEGHTITFYKNVTTIQTRLAAVMVGGTTTSELGEE 1200

Query: 1165 -------IEEVNLDEEEY--LAIKEAV-YYNLEVSRKSFVSKFSPLIKQLEEAGFIGEDP 1314
                   I +   DEEE+   A ++ V +   +  ++    K   L+++L++ GFIGE+P
Sbjct: 1201 GSTEPEPIFDTTEDEEEFDSEAHQQIVSHVATQAQQQQLDPKLQQLMERLKDQGFIGENP 1260

Query: 1315 LKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQKALKRHTQPLLDLKVIRPSKSRHRT 1494
            ++HWAKNK+ C LDI NPD  + DKP+KH+TP ++K  ++H + LLD+ VIRPSKS+HRT
Sbjct: 1261 MQHWAKNKILCKLDIKNPDLIIEDKPIKHLTPAMEKQFQKHVKALLDIGVIRPSKSKHRT 1320

Query: 1495 TTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNTNKDQYSLPGINAIIKSVGNSRIYS 1674
            T  IV SGT IDP T + + GKER+VFNYKRLNDNT KDQYSLPGI  I+K VGN +++S
Sbjct: 1321 TAFIVESGTVIDPVTKKTIHGKERMVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKKLFS 1380

Query: 1675 KFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMPFGLKNAPAVFQRKMDDCFRGTEDF 1854
            KFDLKSGFHQV M  +SI WTAFW P GL+EWL MPFGLKNAPAVFQRKMD CF+GTE+F
Sbjct: 1381 KFDLKSGFHQVAMAKESIPWTAFWVPQGLFEWLVMPFGLKNAPAVFQRKMDQCFKGTEEF 1440

Query: 1855 IAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVLSPSKM 1977
            IAVYIDDILVFS +  EH KH+ +ML++CQE+GLVLSP+KM
Sbjct: 1441 IAVYIDDILVFSETMAEHTKHVGIMLKICQENGLVLSPNKM 1481



 Score =  160 bits (406), Expect(3) = 0.0
 Identities = 73/126 (57%), Positives = 94/126 (74%)
 Frame = +2

Query: 1982 IAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLGLLNYARTYILNLG 2161
            +A  ++EFLG II   ++ LQPH+IKKI       L T K LRS+LGLLNYAR YI NLG
Sbjct: 1483 LAQREIEFLGTIISQGQMKLQPHVIKKIVNKANMELETTKGLRSFLGLLNYARIYIPNLG 1542

Query: 2162 RLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCYMILETDRSMDGWG 2341
            + L PLYAKTSPTGE+++N QDW L+K+IK  V KLP+L +PP +C +I+E+D  M+GWG
Sbjct: 1543 KKLSPLYAKTSPTGEKKFNRQDWHLIKEIKDMVQKLPNLAIPPARCCVIIESDGCMEGWG 1602

Query: 2342 GVCKWK 2359
             +CKWK
Sbjct: 1603 AICKWK 1608



 Score = 94.0 bits (232), Expect(3) = 0.0
 Identities = 39/58 (67%), Positives = 50/58 (86%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R KKC+CYLCG EGHFA+ECP+ KR+VKRVA+FE +N+PE F I+SV +GE+ SDAI+
Sbjct: 784 RNKKCKCYLCGDEGHFAKECPNNKRDVKRVAIFEGINLPEGFDIVSVEEGEDDSDAIY 841


>gb|ANK58536.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  692 bits (1785), Expect = 0.0
 Identities = 343/606 (56%), Positives = 440/606 (72%), Gaps = 9/606 (1%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYIYMLGELEGGYKPQVRLPEHQLNCLHEWQHNSFVQVQNE- 366
            +SE E+      ++    E + MLGE++GGY+PQ++LPE Q+NC+H W HN  + VQ   
Sbjct: 868  ISEGEDGADELQRSLQTLEIVLMLGEIDGGYRPQIKLPEEQMNCVHNWIHNGDIFVQRAV 927

Query: 367  GCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNLIQEQQYYI 546
             C  C+R++++RARIHC   L+T CNLC P+Y                 + +IQEQ  YI
Sbjct: 928  HCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAPSTPINPRRIIQEQHNYI 987

Query: 547  AWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGL------RQMGES-SSSEHTNVLY 705
             WCE EI RLNKEV++++             +D++ L      R+ G      E  N L 
Sbjct: 988  GWCEVEIERLNKEVKHYKGLYEALLMETSLRKDYEELIDGDKERRKGILIQEPEEVNYLG 1047

Query: 706  Q-ESILKVSQEGQSGPRLIKNMLYNMKVELDIPRVQRFSVRAILDTGATTCCIDERSIPA 882
            + E IL    E +   + +KNMLYN  +E +IP V RF VRAILDTGA+TCCI+E ++P 
Sbjct: 1048 EDEKILAAGTEEKK--KFVKNMLYNSDIESEIPDVSRFRVRAILDTGASTCCINEGAVPK 1105

Query: 883  DAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYSFEMTLGDGIQMIIGCN 1062
            +A+E++   VQ +G+NS Q    KLK GRM I  N FRIP+TYS  + +GD IQMI+GCN
Sbjct: 1106 EALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMNTFRIPFTYSLPLVIGDNIQMIVGCN 1165

Query: 1063 FVKAMQGGVRIEGNTMTFYKNLTVINTSPKVVAAIEEVNLDEEEYLAIKEAVYYNLEVSR 1242
            F++AM GGVRIEGN +TFYKNLT I+TSP+V     +  + EEEYL ++E V  N+  SR
Sbjct: 1166 FIRAMYGGVRIEGNEVTFYKNLTRISTSPEVSVNSLDEEVCEEEYLQVQEMVICNIGESR 1225

Query: 1243 KSFVSKFSPLIKQLEEAGFIGEDPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQK 1422
            +SF+ KF PL+++L+EAGFIGE+PL+HW KN + C LDI NPDF + D+PLK++TPQ+++
Sbjct: 1226 ESFLKKFRPLLEELKEAGFIGENPLQHWKKNGILCQLDIKNPDFIIEDRPLKNLTPQMKE 1285

Query: 1423 ALKRHTQPLLDLKVIRPSKSRHRTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNT 1602
            + K+H + LLDL VIR SKSRHRTT M+VNSGTT+DP+TG+E+K KER+VFNYKRLND T
Sbjct: 1286 SFKKHIKVLLDLGVIRASKSRHRTTAMLVNSGTTVDPKTGKEIKRKERMVFNYKRLNDIT 1345

Query: 1603 NKDQYSLPGINAIIKSVGNSRIYSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMP 1782
            +KDQYSLPGIN I+K VGNS I+SKFDLKSGFHQV MHPDSIEWTAFW PDGLYE L MP
Sbjct: 1346 HKDQYSLPGINTILKKVGNSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEGLVMP 1405

Query: 1783 FGLKNAPAVFQRKMDDCFRGTEDFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVL 1962
            FGLKNAP+VFQRKMD+CF+GTEDFIAVYIDDILVFS +E++HAKHLK ML +C+ +GLVL
Sbjct: 1406 FGLKNAPSVFQRKMDECFKGTEDFIAVYIDDILVFSENEKDHAKHLKAMLEICKRNGLVL 1465

Query: 1963 SPSKMK 1980
            SPSKMK
Sbjct: 1466 SPSKMK 1471



 Score =  179 bits (453), Expect = 2e-42
 Identities = 87/139 (62%), Positives = 101/139 (72%)
 Frame = +2

Query: 1943 KNTGSS*AHRK*NIAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLG 2122
            K  G   +  K  IAV +VEFLGA IG+ ++ LQPH+IKKI +  E  L   K +RSWLG
Sbjct: 1459 KRNGLVLSPSKMKIAVQEVEFLGAQIGNQRIRLQPHVIKKIVEFNEAELKEKKGMRSWLG 1518

Query: 2123 LLNYARTYILNLGRLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCY 2302
            +LNYAR YI NLGRLL PLYAKTSPTG++R N QDW LV QIK  V KLP LELPPE C+
Sbjct: 1519 ILNYARAYIPNLGRLLSPLYAKTSPTGDKRMNAQDWKLVAQIKEEVQKLPHLELPPEDCF 1578

Query: 2303 MILETDRSMDGWGGVCKWK 2359
            +ILET   M GWGG+CKWK
Sbjct: 1579 IILETHGCMTGWGGICKWK 1597



 Score = 92.8 bits (229), Expect = 2e-15
 Identities = 39/58 (67%), Positives = 50/58 (86%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R K+C+C+LCGQEGHFARECP++KR+ KR+AMFE L IPED  I+SV +GE+ SDAI+
Sbjct: 809 RNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMSDAIY 866


>ref|YP_009408594.1| P3b [Jujube mosaic-associated virus]
 gb|ASL69990.1| P3b [Jujube mosaic-associated virus]
          Length = 1597

 Score =  592 bits (1527), Expect(3) = 0.0
 Identities = 301/604 (49%), Positives = 398/604 (65%), Gaps = 8/604 (1%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQE----EYIYMLGELEGGYKPQVRLPEHQLNCLHEWQHNSFVQV 357
            VSE E +T    +    E    E ++MLG  EG  + Q+++ +  LNC+H+WQ N  V V
Sbjct: 665  VSEGETSTEQQCQAATLEFPGIEGLFMLGAPEGS-RVQIKVSDEILNCVHQWQMNEDVDV 723

Query: 358  QNEGCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNLIQEQQ 537
                C+ CK  T +R RIHC    +T C +C  +Y             +F  + +++E  
Sbjct: 724  LYIRCLFCKYNTKKRMRIHCTQCKVTACPMCSDYYLQVHITPGPPVQKEFDEKPVLRELL 783

Query: 538  YYIAWCEGEISRLNKEVEYF--RXXXXXXXXXXXXWEDFKGLRQMG-ESSSSEHTNVLYQ 708
             Y+ W + E  RL  E+     R             E  K L  +       E    L +
Sbjct: 784  QYVTWLQTENDRLKAELRAATERRPREDVGDVEIDAELLKDLEDLEIHDKGRESIQYLGE 843

Query: 709  ESILKVSQEGQS-GPRLIKNMLYNMKVELDIPRVQRFSVRAILDTGATTCCIDERSIPAD 885
              + + S + +   P+ + N L+NMKV   IP +  F+V AILDTGAT CCID+ S+P D
Sbjct: 844  YVVCRASTDQKEYHPKRMINRLFNMKVTFHIPTMDPFTVSAILDTGATACCIDKGSVPED 903

Query: 886  AVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRIPYTYSFEMTLGDGIQMIIGCNF 1065
            A+E+N+  V F+G+NSRQ A+ KLK G+M I +N F+IP+TYSF M LGDGIQMIIGCNF
Sbjct: 904  ALEENSYTVYFNGVNSRQAANWKLKGGQMQIGENKFKIPFTYSFNMNLGDGIQMIIGCNF 963

Query: 1066 VKAMQGGVRIEGNTMTFYKNLTVINTSPKVVAAIEEVNLDEEEYLAIKEAVYYNLEVSRK 1245
            V+AMQGG+RIEGN +TFYK LT I T+      I+E   ++ +   + E   ++   S +
Sbjct: 964  VRAMQGGIRIEGNQVTFYKQLTTIETTMSAGPCIQEE--EDLDAAVMTELSLFSAVPSNQ 1021

Query: 1246 SFVSKFSPLIKQLEEAGFIGEDPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQKA 1425
             F+ ++   + +L+E G+IG++PL+HW KN++ CH+DIINPD T+ D PLKHVTP L++ 
Sbjct: 1022 KFLQQYRGTLDRLKEQGYIGDNPLQHWEKNQLKCHIDIINPDITIQDPPLKHVTPALKET 1081

Query: 1426 LKRHTQPLLDLKVIRPSKSRHRTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNTN 1605
             ++H   LL L VIR S SRHRT  MIV SGTT+DP TG+E KGKER+VFNY+ LNDNT 
Sbjct: 1082 FQKHIDALLKLGVIRESSSRHRTMAMIVKSGTTVDPITGQEQKGKERMVFNYRTLNDNTY 1141

Query: 1606 KDQYSLPGINAIIKSVGNSRIYSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMPF 1785
            KDQYSLPGIN I+K VGNS+IYSKFDLKSGFHQ+ M  +SI WTAF  P GLYEWL MPF
Sbjct: 1142 KDQYSLPGINTILKKVGNSKIYSKFDLKSGFHQIAMEKESIPWTAFIVPQGLYEWLVMPF 1201

Query: 1786 GLKNAPAVFQRKMDDCFRGTEDFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVLS 1965
            GLKNAPA+FQRKMD+CF+GTEDFIAVYIDD+LVFS +E++H +HL VML +C++HGL+LS
Sbjct: 1202 GLKNAPALFQRKMDNCFKGTEDFIAVYIDDVLVFSNNEQDHHRHLHVMLNICKQHGLILS 1261

Query: 1966 PSKM 1977
            PSKM
Sbjct: 1262 PSKM 1265



 Score =  164 bits (415), Expect(3) = 0.0
 Identities = 76/126 (60%), Positives = 95/126 (75%)
 Frame = +2

Query: 1982 IAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLGLLNYARTYILNLG 2161
            IAV +V FLGA++G  K+ LQPHII+KI   ++ +L   K LRSWLG+LNYAR+YI NLG
Sbjct: 1267 IAVPEVYFLGAVLGKQKLKLQPHIIQKIANFKDADLQEKKGLRSWLGILNYARSYIPNLG 1326

Query: 2162 RLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCYMILETDRSMDGWG 2341
              LGPLY KTSP G++R+   DWALVK++K  +  LPDLE+ P   Y++LETD SM GWG
Sbjct: 1327 SKLGPLYEKTSPHGDKRFKPSDWALVKELKAQIQNLPDLEIAPASAYIVLETDGSMTGWG 1386

Query: 2342 GVCKWK 2359
            GVCKWK
Sbjct: 1387 GVCKWK 1392



 Score = 75.9 bits (185), Expect(3) = 0.0
 Identities = 33/58 (56%), Positives = 44/58 (75%)
 Frame = +2

Query: 11  GREKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAI 184
           GR KKC+C++CG+EGHFAREC +   N +RVAM  +L++PED+ I+SV   E  SDAI
Sbjct: 605 GRVKKCKCFICGKEGHFARECRNNVGNKERVAMLNELDLPEDYDIVSVDLNEPDSDAI 662


>emb|CAE81279.1| polyprotein [Cacao swollen shoot virus]
          Length = 1816

 Score =  574 bits (1480), Expect(3) = 0.0
 Identities = 304/644 (47%), Positives = 405/644 (62%), Gaps = 48/644 (7%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYIYMLGELEGGY--------KPQVRLPEHQLNCLHEWQHNS 345
            +SENE      L   + +E ++M+ E +  Y           VR+   Q +CLH+W+HN 
Sbjct: 845  ISENENGEE--LDAEVVQEKVFMMREEDQSYWLGKTNHWTAMVRVSSQQYHCLHQWEHNK 902

Query: 346  FVQV-QNEGCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNL 522
             + V  +  C  CK+ T  R+RIHC    +T C +C P Y              F +  L
Sbjct: 903  EITVVAHINCHFCKQPTQLRSRIHCSTCKLTSCFMCAPIYCNITVQQQPKPPTPFNTNTL 962

Query: 523  IQEQQYYIAWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGLRQMGES--------- 675
            +Q+Q  YI W EGE  RL + VE+++             +D K L    +          
Sbjct: 963  LQQQAAYIQWLEGENQRLTEAVEFYKKEAADLRLEKELEKDRKDLEPKIQDRGKKVQILD 1022

Query: 676  -----SSSEHTNVLYQESILKVS----QEGQSGPRLIK--NMLYNMKVELDIPRVQR-FS 819
                 S  E T  L ++++ ++     +E Q   + +K  NMLYN+ V L IP V R   
Sbjct: 1023 PEAGPSDDEQTAYLEEDTVSRIIGHTVEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIK 1082

Query: 820  VRAILDTGATTCCIDERSIPADAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRI 999
            V+AILDTGATTCCI+  S+P  A+E+N  LVQF GINS Q  D KLK GRM I ++ FRI
Sbjct: 1083 VKAILDTGATTCCININSVPKTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRI 1142

Query: 1000 PYTYSFEMTLGDGIQMIIGCNFVKAMQGGVRIEGNTMTFYKNLTVINTSPKVVAA----- 1164
            PY Y+F ++LGDGI+MI+GCNF++ M GG+RIEG+T+TFYKN+T I T    V       
Sbjct: 1143 PYCYAFPLSLGDGIEMILGCNFIRGMYGGLRIEGHTITFYKNVTTIQTRLAAVMVGGTTT 1202

Query: 1165 ----------IEEVNLDEEEYLA-IKEAVYYNL--EVSRKSFVSKFSPLIKQLEEAGFIG 1305
                      I E+  + EE+ + + + +  ++  +  ++    K   L+++L++ GFIG
Sbjct: 1203 SELGEEGTEPIFEIEEETEEFDSEVHQQIMSHVAAQAQQQKLDPKLQQLMERLKDQGFIG 1262

Query: 1306 EDPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQKALKRHTQPLLDLKVIRPSKSR 1485
            E+P++HWAKNK+ C LDI NPD  + DKP+KH+TP ++K  ++H + LLD+ VIRPSKS+
Sbjct: 1263 ENPMQHWAKNKILCRLDIKNPDLIIEDKPIKHLTPAMEKQFQKHVKALLDIGVIRPSKSK 1322

Query: 1486 HRTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNTNKDQYSLPGINAIIKSVGNSR 1665
            HRTT  IV SGT IDP T + + GKER+VFNYKRLNDNT KDQYSLPGI  I+K VGN +
Sbjct: 1323 HRTTAFIVESGTVIDPVTKKTIHGKERMVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKK 1382

Query: 1666 IYSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMPFGLKNAPAVFQRKMDDCFRGT 1845
            I+SKFDLKSGFHQV M  +SI WTAFW P GLYEWL MPFGLKNAPAVFQRKMD CF+GT
Sbjct: 1383 IFSKFDLKSGFHQVAMAKESIPWTAFWVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKGT 1442

Query: 1846 EDFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVLSPSKM 1977
            E+FIAVYIDDILVFS +  EH KH+ +ML +CQE+GLVLSP+K+
Sbjct: 1443 EEFIAVYIDDILVFSETMAEHTKHIGIMLTICQENGLVLSPNKI 1486



 Score =  162 bits (411), Expect(3) = 0.0
 Identities = 75/126 (59%), Positives = 95/126 (75%)
 Frame = +2

Query: 1982 IAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLGLLNYARTYILNLG 2161
            +A  ++EFLG II   ++ LQPHIIKKI    +  L T K LRS+LGLLNYAR YI NLG
Sbjct: 1488 LAQREIEFLGTIISQGQMKLQPHIIKKIVNKADMELETTKGLRSFLGLLNYARIYIPNLG 1547

Query: 2162 RLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCYMILETDRSMDGWG 2341
            + L PLYAKTSPTGE+++N QDW L+K+IK  V KLP+L +PP +C +I+E+D  M+GWG
Sbjct: 1548 KKLSPLYAKTSPTGEKKFNRQDWHLIKEIKNMVQKLPNLAIPPARCCIIIESDGCMEGWG 1607

Query: 2342 GVCKWK 2359
             VCKWK
Sbjct: 1608 AVCKWK 1613



 Score = 95.1 bits (235), Expect(3) = 0.0
 Identities = 40/58 (68%), Positives = 50/58 (86%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R KKC+CYLCG EGHFARECP+ KR+VKRVA+FE +N+PE F I+SV +GE+ SDAI+
Sbjct: 786 RNKKCKCYLCGDEGHFARECPNNKRDVKRVAIFEGINLPEGFDIVSVEEGEDDSDAIY 843


>gb|ASG91864.1| polyprotein [Cacao swollen shoot virus]
          Length = 1845

 Score =  575 bits (1481), Expect(3) = 0.0
 Identities = 306/644 (47%), Positives = 399/644 (61%), Gaps = 48/644 (7%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYIYMLGELEGGY--------KPQVRLPEHQLNCLHEWQHNS 345
            +SENE      L   + +E ++M+ E +  Y           VR+   Q  CLH+W+HN 
Sbjct: 844  ISENENGEE--LDAEVVQEKVFMMREEDQSYWLGKTNHWTAMVRVSSQQYYCLHQWEHNK 901

Query: 346  FVQV-QNEGCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNL 522
             + V  +  C  CK+ T  R+RIHC    +T C +C P Y              F +  L
Sbjct: 902  EITVVAHINCHFCKQPTQLRSRIHCPTCKLTSCFMCAPIYCNITVQQQPKPPTPFNTNTL 961

Query: 523  IQEQQYYIAWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGLRQM------------ 666
            +Q+Q  YI W EGE  RL + VE+++             +D K L               
Sbjct: 962  LQQQAAYIQWLEGENQRLTEAVEFYKKEAADLRLEKELEKDRKDLEPKIQDRGKKVQILD 1021

Query: 667  --GESSSSEHTNVLYQESILKVS----QEGQSGPRLIK--NMLYNMKVELDIPRVQR-FS 819
               E S  E T  L ++++ ++     +E Q   + +K  NMLYN+ V L IP V R   
Sbjct: 1022 PGAEPSDDELTAYLEEDTVSRIIGHTVEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIK 1081

Query: 820  VRAILDTGATTCCIDERSIPADAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRI 999
            V+AILDTGATTCCI+  S+P  A+E+N  LVQF GINS Q  D KLK GRM I ++ FRI
Sbjct: 1082 VKAILDTGATTCCININSVPKTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRI 1141

Query: 1000 PYTYSFEMTLGDGIQMIIGCNFVKAMQGGVRIEGNTMTFYKNLTVINTSPKVVAA----- 1164
            PY Y+F ++LGDGI+MI+GCNF++ M GG+RIEG+T+TFYKN+T I T    V       
Sbjct: 1142 PYCYAFPLSLGDGIEMILGCNFIRGMYGGLRIEGHTITFYKNVTTIQTRLAAVMVGGTTT 1201

Query: 1165 -------IEEVNLDEEEYLAIKEAVYYNL------EVSRKSFVSKFSPLIKQLEEAGFIG 1305
                    E +   EEE       V+  +      +  ++    K   L+++L++ GFIG
Sbjct: 1202 SELGEEGTEPIFETEEETEEFDSEVHQQIVSHVAAQAQQQKLDPKLQQLMERLKDQGFIG 1261

Query: 1306 EDPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQKALKRHTQPLLDLKVIRPSKSR 1485
            E+P++HWAKNK+ C LDI NPD  + DKP+KH+TP ++K  ++H + LLD+ VIRPSKS+
Sbjct: 1262 ENPMQHWAKNKILCRLDIKNPDLIIEDKPIKHLTPAMEKQFQKHVKALLDIGVIRPSKSK 1321

Query: 1486 HRTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNTNKDQYSLPGINAIIKSVGNSR 1665
            HRTT  IV SGT IDP T + + GKER+VFNYKRLNDNT KDQYSLPGI  I+K VGN +
Sbjct: 1322 HRTTAFIVESGTVIDPVTKKTIHGKERMVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKK 1381

Query: 1666 IYSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMPFGLKNAPAVFQRKMDDCFRGT 1845
            I+SKFDLKSGFHQV M  +SI WTAFW P GLYEWL MPFGLKNAPAVFQRKMD CF+GT
Sbjct: 1382 IFSKFDLKSGFHQVAMAKESIPWTAFWVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKGT 1441

Query: 1846 EDFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVLSPSKM 1977
            E+FIAVYIDDILVFS +  EH KH+ +ML +CQE+GLVLSP+K+
Sbjct: 1442 EEFIAVYIDDILVFSETMAEHTKHIGIMLTICQENGLVLSPNKI 1485



 Score =  162 bits (409), Expect(3) = 0.0
 Identities = 74/126 (58%), Positives = 95/126 (75%)
 Frame = +2

Query: 1982 IAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLGLLNYARTYILNLG 2161
            +A  ++EFLG II   ++ LQPH+IKKI    +  L T K LRS+LGLLNYAR YI NLG
Sbjct: 1487 LAQREIEFLGTIISQGQMKLQPHVIKKIVNKADMELETAKGLRSFLGLLNYARIYIPNLG 1546

Query: 2162 RLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCYMILETDRSMDGWG 2341
            + L PLYAKTSPTGE+++N QDW L+K+IK  V KLP+L +PP +C +I+E+D  M+GWG
Sbjct: 1547 KKLSPLYAKTSPTGEKKFNRQDWHLIKEIKDMVQKLPNLAIPPARCCIIIESDGCMEGWG 1606

Query: 2342 GVCKWK 2359
             VCKWK
Sbjct: 1607 AVCKWK 1612



 Score = 95.1 bits (235), Expect(3) = 0.0
 Identities = 40/58 (68%), Positives = 50/58 (86%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R KKC+CYLCG EGHFARECP+ KR+VKRVA+FE +N+PE F I+SV +GE+ SDAI+
Sbjct: 785 RNKKCKCYLCGDEGHFARECPNNKRDVKRVAIFEGINLPEGFDIVSVEEGEDDSDAIY 842


>gb|ASG91853.1| polyprotein [Cacao swollen shoot virus]
          Length = 1847

 Score =  575 bits (1481), Expect(3) = 0.0
 Identities = 305/644 (47%), Positives = 405/644 (62%), Gaps = 48/644 (7%)
 Frame = +1

Query: 190  VSENEEATTATLKTCIQEEYIYMLGELEGGY--------KPQVRLPEHQLNCLHEWQHNS 345
            +SENE      L   + +E ++M+ E +  Y           VR+   Q  CLH+W+HN 
Sbjct: 846  ISENENGEE--LDAEVVQEKVFMMREEDQSYWLGKTNHWTAMVRVSSQQYYCLHQWEHNK 903

Query: 346  FVQV-QNEGCVCCKRKTMQRARIHCLNYLITVCNLCRPHYFXXXXXXXXXXXXQFFSQNL 522
             + V  +  C  CK+ T  R+RIHC    +T C +C P Y              F +  L
Sbjct: 904  EITVVAHINCHFCKQPTQLRSRIHCPTCKLTSCFMCAPIYCNITVQQQPKPPTPFNTNTL 963

Query: 523  IQEQQYYIAWCEGEISRLNKEVEYFRXXXXXXXXXXXXWEDFKGLRQMGES--------- 675
            +Q+Q  YI W EGE  RL + VE+++             +D K L    +          
Sbjct: 964  LQQQAAYIQWLEGENQRLTEAVEFYKKEAADLRLEKELEKDRKDLEPKIQDRGKRVQILD 1023

Query: 676  -----SSSEHTNVLYQESILKVS----QEGQSGPRLIK--NMLYNMKVELDIPRVQR-FS 819
                 S  E T  L ++++ ++     +E Q   + +K  NMLYN+ V L IP V R   
Sbjct: 1024 PEEGPSDDEQTAYLEEDTVSRIIGHTVEEQQEVKKPVKRGNMLYNLDVVLLIPEVGRPIK 1083

Query: 820  VRAILDTGATTCCIDERSIPADAVEKNNTLVQFSGINSRQMADMKLKNGRM*IEDNNFRI 999
            V+AILDTGATTCCI+  S+P  A+E+N  LVQF GINS Q  D KLK GRM I ++ FRI
Sbjct: 1084 VKAILDTGATTCCININSVPKTAIEQNTFLVQFRGINSTQSVDKKLKYGRMTISNHQFRI 1143

Query: 1000 PYTYSFEMTLGDGIQMIIGCNFVKAMQGGVRIEGNTMTFYKNLTVINTSPKVVAA----- 1164
            PY Y+F ++LGDGI+MI+GCNF++ M GG+RIEG+T+TFYKN+T I TS   V       
Sbjct: 1144 PYCYAFPLSLGDGIEMILGCNFIRGMYGGLRIEGHTITFYKNVTTIQTSLAAVMVGGTTT 1203

Query: 1165 ----------IEEVNLDEEEYLA-IKEAVYYNL--EVSRKSFVSKFSPLIKQLEEAGFIG 1305
                      I E+  + EE+ + + + +  ++  +  ++    K   L+++L++ GFIG
Sbjct: 1204 SELGEEGTEPIFEIEEETEEFDSEVHQQIVSHVAAQAQQQKLDPKLQQLMERLKDQGFIG 1263

Query: 1306 EDPLKHWAKNKVTCHLDIINPDFTVADKPLKHVTPQLQKALKRHTQPLLDLKVIRPSKSR 1485
            E+P++HWAKNK+ C LDI NPD  + DKP+KH+TP ++K  ++H + LLD+ VIRPSKS+
Sbjct: 1264 ENPMQHWAKNKILCRLDIKNPDLIIEDKPIKHLTPAMEKQFQKHVKALLDIGVIRPSKSK 1323

Query: 1486 HRTTTMIVNSGTTIDPQTGEEVKGKERLVFNYKRLNDNTNKDQYSLPGINAIIKSVGNSR 1665
            HRTT  IV SGT IDP T + + GKER+VFNYKRLNDNT KDQYSLPGI  I+K VGN +
Sbjct: 1324 HRTTAFIVESGTVIDPVTKKTIHGKERMVFNYKRLNDNTEKDQYSLPGIQTILKRVGNKK 1383

Query: 1666 IYSKFDLKSGFHQVVMHPDSIEWTAFWAPDGLYEWLAMPFGLKNAPAVFQRKMDDCFRGT 1845
            I+SKFDLKSGFHQV M  +SI WTAFW P GLYEWL MPFGLKNAPAVFQRKMD CF+GT
Sbjct: 1384 IFSKFDLKSGFHQVAMAEESIPWTAFWVPQGLYEWLVMPFGLKNAPAVFQRKMDQCFKGT 1443

Query: 1846 EDFIAVYIDDILVFSYSEEEHAKHLKVMLRVCQEHGLVLSPSKM 1977
            E+FIAVYIDDILVFS +  EH KH+ +ML +CQE+GLVLSP+K+
Sbjct: 1444 EEFIAVYIDDILVFSETMAEHTKHIGIMLTICQENGLVLSPNKI 1487



 Score =  160 bits (406), Expect(3) = 0.0
 Identities = 73/126 (57%), Positives = 95/126 (75%)
 Frame = +2

Query: 1982 IAVSKVEFLGAIIGDSKVTLQPHIIKKITQAEEQNLTTIK*LRSWLGLLNYARTYILNLG 2161
            +A  ++EFLG II   ++ LQPH+IKKI    +  L T + LRS+LGLLNYAR YI NLG
Sbjct: 1489 LAQREIEFLGTIISQGQMKLQPHVIKKIVNKADMELETTRGLRSFLGLLNYARIYIPNLG 1548

Query: 2162 RLLGPLYAKTSPTGERRWNEQDWALVKQIKTAVSKLPDLELPPEQCYMILETDRSMDGWG 2341
            + L PLYAKTSPTGE+++N QDW L+K+IK  V KLP+L +PP +C +I+E+D  M+GWG
Sbjct: 1549 KKLSPLYAKTSPTGEKKFNRQDWHLIKEIKDMVQKLPNLAIPPARCCIIIESDGCMEGWG 1608

Query: 2342 GVCKWK 2359
             VCKWK
Sbjct: 1609 AVCKWK 1614



 Score = 95.1 bits (235), Expect(3) = 0.0
 Identities = 40/58 (68%), Positives = 50/58 (86%)
 Frame = +2

Query: 14  REKKCRCYLCGQEGHFARECPSEKRNVKRVAMFEQLNIPEDFKILSVHDGEEQSDAIF 187
           R KKC+CYLCG EGHFARECP+ KR+VKRVA+FE +N+PE F I+SV +GE+ SDAI+
Sbjct: 787 RNKKCKCYLCGDEGHFARECPNNKRDVKRVAIFEGINLPEGFDIVSVEEGEDDSDAIY 844