BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00056918
         (470 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKA60769.1| Retrovirus-related Pol polyprotein from transposo...    50   6e-06

>gb|PKA60769.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 107

 Score = 50.1 bits (118), Expect(2) = 6e-06
 Identities = 20/36 (55%), Positives = 30/36 (83%)
 Frame = -1

Query: 467 CKNRSTIYIVNNLMFHKRIKYIDIDCYFV*EDVLNK 360
           C N+S ++I +NL+FH+R K+I+IDC+FV E +LNK
Sbjct: 30  CDNQSALHIASNLVFHERTKHIEIDCHFVREKLLNK 65



 Score = 27.7 bits (60), Expect(2) = 6e-06
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 385 LFEKMCLTSKFYTLCNKLSMFDIYASA 305
           +F K    S+   +CNKL M DIYA A
Sbjct: 81  MFTKSVKGSRIDFVCNKLGMHDIYAPA 107