BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00056875
         (515 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKA60107.1| Retrovirus-related Pol polyprotein from transposo...    62   1e-15
gb|PKA52500.1| 5'-3' exoribonuclease 2 [Apostasia shenzhenica]         56   1e-13
gb|PKA51673.1| Retrovirus-related Pol polyprotein from transposo...    65   1e-09
gb|PKA50321.1| Retrovirus-related Pol polyprotein from transposo...    66   1e-09
gb|PKA59663.1| Retrovirus-related Pol polyprotein from transposo...    65   2e-09
gb|PKA49930.1| Retrovirus-related Pol polyprotein from transposo...    59   5e-07

>gb|PKA60107.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 696

 Score = 62.4 bits (150), Expect(3) = 1e-15
 Identities = 27/42 (64%), Positives = 32/42 (76%)
 Frame = -3

Query: 510 FLPLKLTNDSYLLWKTHFVPLLRLHGTLGIVEGTDRTDSFNE 385
           FLPLKLT D+YLLWKT F+PLLR H  LG+V+GTD     N+
Sbjct: 27  FLPLKLTRDNYLLWKTQFLPLLRAHDLLGVVDGTDPCPDIND 68



 Score = 35.4 bits (80), Expect(3) = 1e-15
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = -1

Query: 287 FQLKKQ--MIRRENDSIHEHMQTIKXXXXXXXXIGHPISDRDLIM 159
           FQLK Q  MI++ + SI ++MQ IK        IGH +SD D++M
Sbjct: 123 FQLKAQLHMIKQGDSSIDDYMQAIKNIINNLSAIGHSMSDPDILM 167



 Score = 32.7 bits (73), Expect(3) = 1e-15
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 370 IVFGLNSSREVWDALAKAFQSHSRAKM 290
           +V  LN+S  VW  LA  F SHSRA++
Sbjct: 96  LVVNLNTSHAVWKTLADTFASHSRARV 122



 Score = 58.9 bits (141), Expect = 6e-07
 Identities = 26/44 (59%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
 Frame = -3

Query: 132 GGHGQDRGR-SRGRCQICFIPGHFAHECNKTIDANFIGGFSSQH 4
           G +G+ RG   RGRCQIC IPGH+AHEC K  D +FIGG +S +
Sbjct: 241 GRNGRGRGGCGRGRCQICLIPGHYAHECYKRFDRHFIGGLTSMN 284


>gb|PKA52500.1| 5'-3' exoribonuclease 2 [Apostasia shenzhenica]
          Length = 455

 Score = 55.8 bits (133), Expect(3) = 1e-13
 Identities = 24/42 (57%), Positives = 29/42 (69%)
 Frame = -3

Query: 510 FLPLKLTNDSYLLWKTHFVPLLRLHGTLGIVEGTDRTDSFNE 385
           FLP KLT D+YLLWK  F+PLLR H  LG+V+ TD     N+
Sbjct: 27  FLPFKLTRDNYLLWKIQFLPLLRAHDLLGVVDDTDPCPDIND 68



 Score = 34.7 bits (78), Expect(3) = 1e-13
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 370 IVFGLNSSREVWDALAKAFQSHSRAKML 287
           +V  LN+S  VW  LA  F SHSRA++L
Sbjct: 96  LVINLNTSHAVWKTLADTFTSHSRARVL 123



 Score = 33.1 bits (74), Expect(3) = 1e-13
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -1

Query: 272 QMIRRENDSIHEHMQTIKXXXXXXXXIGHPISDRDLIM 159
           QMI++ + SI ++MQ IK        IGH +SD D++M
Sbjct: 130 QMIKQGDSSIDDYMQAIKNIINNLSTIGHSMSDPDILM 167


>gb|PKA51673.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 233

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 43/114 (37%), Positives = 57/114 (50%)
 Frame = -3

Query: 345 EKYGMLLPRHSSHILVLRCFSTQETDDSARK*FYT*AYADN*KHRQQHCSNWTSYIGQGS 166
           E +G+L    SSH  +L+  STQ TD S          + N   R    S+  +  G+G 
Sbjct: 65  EVHGIL----SSHERLLQLKSTQSTDTSFP--------SINTAGRSHSSSSSFNRGGRGG 112

Query: 165 YYAEATTTVVDGGHGQDRGRSRGRCQICFIPGHFAHECNKTIDANFIGGFSSQH 4
                      GG G+ R R +GRCQIC +PGH+AHEC K  D  FIGG +S +
Sbjct: 113 R----------GGRGRGRSRGKGRCQICLMPGHYAHECYKRFDQRFIGGLNSMN 156


>gb|PKA50321.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 335

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 27/41 (65%), Positives = 30/41 (73%)
 Frame = -3

Query: 132 GGHGQDRGRSRGRCQICFIPGHFAHECNKTIDANFIGGFSS 10
           GG GQ R R +GRCQIC IPGH+AHEC K  D  FIGG +S
Sbjct: 84  GGRGQGRSRGKGRCQICLIPGHYAHECYKRFDQRFIGGLNS 124


>gb|PKA59663.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 242

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 26/41 (63%), Positives = 30/41 (73%)
 Frame = -3

Query: 132 GGHGQDRGRSRGRCQICFIPGHFAHECNKTIDANFIGGFSS 10
           GG G+ R R +GRCQIC IPGH+AHEC K  D  FIGG +S
Sbjct: 114 GGRGRGRSRGKGRCQICLIPGHYAHECYKRFDQRFIGGLNS 154


>gb|PKA49930.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 475

 Score = 58.9 bits (141), Expect = 5e-07
 Identities = 41/111 (36%), Positives = 53/111 (47%)
 Frame = -3

Query: 345 EKYGMLLPRHSSHILVLRCFSTQETDDSARK*FYT*AYADN*KHRQQHCSNWTSYIGQGS 166
           E +G+L    SSH  +L+  S Q TD S          + N   R    S+  +  G+G 
Sbjct: 108 EVHGIL----SSHERLLQLKSAQSTDTSFP--------SINTAGRSHSSSSSFNLGGRGG 155

Query: 165 YYAEATTTVVDGGHGQDRGRSRGRCQICFIPGHFAHECNKTIDANFIGGFS 13
           +          GG GQ R R +GRCQIC I GH+A EC K  D  FIGG +
Sbjct: 156 H----------GGRGQGRSRGKGRCQICLILGHYADECYKRFDQRFIGGLN 196