BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00055331
         (1035 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposo...   243   3e-72
gb|PNX71449.1| retrotransposon-related protein, partial [Trifoli...   234   9e-68
gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposo...   235   9e-67
gb|PHT56189.1| hypothetical protein CQW23_04675 [Capsicum baccatum]   221   2e-61
gb|PHT39301.1| hypothetical protein CQW23_22874 [Capsicum baccatum]   221   7e-61
emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]   219   3e-60
gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group...   216   2e-59
gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japo...   216   3e-59
gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subc...   216   3e-59
dbj|BAB03249.1| polyprotein [Oryza sativa]                            216   3e-59
gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]     216   3e-59
gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subc...   216   3e-59
gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subc...   216   5e-59
emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]        216   5e-59
gb|AAL31653.1|AC079179_8 Putative polyprotein from transposon TN...   216   5e-59
gb|ABA95374.1| retrotransposon protein, putative, Ty1-copia subc...   215   7e-59
gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sa...   215   7e-59
gb|ABA98885.1| retrotransposon protein, putative, Ty1-copia subc...   215   7e-59
gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subc...   215   7e-59
gb|ABA93737.1| retrotransposon protein, putative, Ty1-copia subc...   215   7e-59

>gb|KYP72325.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 565

 Score =  243 bits (621), Expect = 3e-72
 Identities = 146/322 (45%), Positives = 194/322 (60%), Gaps = 14/322 (4%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            L+  K E+  KFK+YKAEVENQL K IKIL+SDRGGEY+SNE+ +F+   GIIH +T  Y
Sbjct: 118  LIIHKSELFEKFKVYKAEVENQLEKSIKILRSDRGGEYSSNEMGEFFETHGIIHEVTPPY 177

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            +PQSNG+A+RKN+TLLDM+N ML+SSG P  L G+  F       +   +   K P +L 
Sbjct: 178  APQSNGIAERKNRTLLDMINAMLISSGLPDNLWGEALFTACHILNRIPYKNSDKTPYELW 237

Query: 363  RVINLT*NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFRCLVINSKVFEI 542
            +            G   K      K++K   KTVD VF+GYSL+S T+R LVINS+V EI
Sbjct: 238  KNRKPNLKYLKVWGCLAKVNIPINKKRKIGPKTVDCVFLGYSLHSTTYRFLVINSEVSEI 297

Query: 543  SNNTQIESRNITFFENIFPFK----------PSTPLPS---INAQTPENVNEETRDLRL* 683
            SNN  +ESR+  FFENIFP K           S+ LPS   +N      +++  R  +  
Sbjct: 298  SNNIIMESRDAVFFENIFPLKNKLSKPVYDTSSSVLPSSSTVNKDFEPRISKRIRKAKDF 357

Query: 684  GNLVMALSL-I**KTH*KPINKPDALFWKETIHNEFQSIISNNT*TLPDLPSRNKPLGCK 860
            G    +  L    KT+ + +   DA FWKE I++E  S+  N T  L DLP   K +GCK
Sbjct: 358  GPEFYSFLLEDDPKTYSEAMRSVDAPFWKEAINDEIDSLKINKTWFLTDLPPGCKSIGCK 417

Query: 861  WIFKKKLKTDGSVEKYKTHLVV 926
            W+F+KKL+TDGS++K+K  LVV
Sbjct: 418  WVFRKKLRTDGSIDKFKARLVV 439


>gb|PNX71449.1| retrotransposon-related protein, partial [Trifolium pratense]
          Length = 675

 Score =  234 bits (597), Expect = 9e-68
 Identities = 146/323 (45%), Positives = 190/323 (58%), Gaps = 15/323 (4%)
 Frame = +3

Query: 18   DEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALYSPQSN 197
            DE  +KFKIYKAEVEN+LN KIK L++DRGGEY SN +S F  + GI+H +T  YSP+SN
Sbjct: 186  DEAENKFKIYKAEVENKLNVKIKRLRTDRGGEYDSNSLSDFCEQNGIVHEVTPPYSPESN 245

Query: 198  GVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKL--GRVI 371
            G+A+RKN+TL +MMN MLLSSGAP  L G+        + +   +   K P +L   R+ 
Sbjct: 246  GIAERKNRTLKEMMNAMLLSSGAPPNLWGEAILSACHIQNRIIFKKTDKTPFELWEKRLP 305

Query: 372  NLT-*NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFRCLVINSKVFEISN 548
            NL     +GC     K      K++K   KT D +FIGY+ NS  +R LV+ S V E   
Sbjct: 306  NLKYLKVWGCLA---KVLLPEPKKRKIGSKTCDCMFIGYAGNSAAYRFLVLKSDVLE--K 360

Query: 549  NTQIESRNITFFENIFPFKPS------TPLPSINA------QTPENVNEETRDLRL*GNL 692
            NT IES+N  FFEN+FP K         PL   N+      + P       ++  L  + 
Sbjct: 361  NTIIESKNAEFFENVFPLKSKIEKSIVEPLCESNSCSNDFEREPRRSTRVRKETNLGDDF 420

Query: 693  VMALSLI**KTH*KPINKPDALFWKETIHNEFQSIISNNT*TLPDLPSRNKPLGCKWIFK 872
             + L      T+ + I+ PD  FWKE I NE  SI+SN+T  + DLP   KP+GCKWIFK
Sbjct: 421  YIFLVDGDPLTYSEAISSPDGPFWKEAIDNEIHSIMSNHTWEIVDLPQGAKPIGCKWIFK 480

Query: 873  KKLKTDGSVEKYKTHLVVKLFSR 941
            KKLK DGSVEKYK  LV K +++
Sbjct: 481  KKLKPDGSVEKYKARLVAKGYTQ 503


>gb|KYP33726.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 880

 Score =  235 bits (599), Expect = 9e-67
 Identities = 143/322 (44%), Positives = 191/322 (59%), Gaps = 14/322 (4%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            L+  K E+  KFK+YKAEVENQL + IKIL+SDRGGEY+SNE+ +F+   GIIH +T  Y
Sbjct: 448  LIIHKSELFEKFKVYKAEVENQLERSIKILRSDRGGEYSSNEMGEFFETHGIIHEVTPPY 507

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            +PQSNG+A+RKN+TLLDM+N ML+SSG P  L G+  F       +   +   K P +L 
Sbjct: 508  APQSNGIAERKNRTLLDMINAMLISSGLPDNLWGEALFTACHILNRIPYKNSDKTPYELW 567

Query: 363  RVINLT*NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFRCLVINSKVFEI 542
            +            G   K      K++K   KTVD VF+GYSL+S T+R LVI S+V EI
Sbjct: 568  KNRKPNLKYLKVWGCLAKVNIPINKKRKIGPKTVDCVFLGYSLHSTTYRFLVIKSEVSEI 627

Query: 543  SNNTQIESRNITFFENIFPFK----------PSTPLPS---INAQTPENVNEETRDLRL* 683
            SNN  +ESR+  FFENIFP K           S+ LPS   +N      +++  R  +  
Sbjct: 628  SNNIIMESRDAIFFENIFPLKNKLSKPVYDTSSSILPSSSTVNKDFETRISKRIRKAKDF 687

Query: 684  G-NLVMALSLI**KTH*KPINKPDALFWKETIHNEFQSIISNNT*TLPDLPSRNKPLGCK 860
            G      L     KT+ + +   DA FWKE I++E  S+  N T  L DL    K +GCK
Sbjct: 688  GPGFYSFLLENDPKTYSEAMRYVDAPFWKEAINDEIDSLKINKTWFLTDLSPGCKSIGCK 747

Query: 861  WIFKKKLKTDGSVEKYKTHLVV 926
            W+F+KKL+TDGS++K+K  LVV
Sbjct: 748  WVFRKKLRTDGSIDKFKARLVV 769


>gb|PHT56189.1| hypothetical protein CQW23_04675 [Capsicum baccatum]
          Length = 921

 Score =  221 bits (563), Expect = 2e-61
 Identities = 143/329 (43%), Positives = 186/329 (56%), Gaps = 16/329 (4%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LL SKDE +  F+ YK EVENQL+K+IK+++SDRGGEY S   +Q   E GIIH  TA Y
Sbjct: 532  LLNSKDEAIDAFRQYKTEVENQLDKRIKMIRSDRGGEYES-PFAQICVENGIIHQTTAPY 590

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKL- 359
            SPQSNG+A+RKN+TL +MMN +L+SSG P  L G+          +        +P +  
Sbjct: 591  SPQSNGIAERKNRTLKEMMNALLISSGLPQNLWGEAILTANRILNRVPHSKTQSIPYEKW 650

Query: 360  -GRVINLT*NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFRCLVINSKVF 536
             GR  NL    F   G   K      K  K   KTVD VFIGY+ +S   R LV  S+  
Sbjct: 651  KGRKPNL--KYFKVWGCLAKVQVPIPKRVKIGPKTVDCVFIGYAKSSKACRFLVHKSEHS 708

Query: 537  EISNNTQIESRNITFFENIFPFKPSTPL-----------PSINAQTPENVNEETRD---L 674
            +I+ NT IES N  FFENI+P+K                PS N    EN    TR     
Sbjct: 709  DINENTVIESDNAEFFENIYPYKTRHEQSSGGSKRPRDEPSENVHNEENPRRSTRQRTST 768

Query: 675  RL*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQSIISNNT*TLPDLPSRNKPLG 854
                + V  L     +T  + ++  D+ FWKE +++E  SI+SN+T  L DLP  NKPLG
Sbjct: 769  SFGSDFVTFLLENEPRTFKEAMSSSDSSFWKEAVNSEIDSILSNHTWELVDLPPGNKPLG 828

Query: 855  CKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
             KWIFK+K+KTDG+++KYK  LVVK F++
Sbjct: 829  SKWIFKRKMKTDGTIDKYKARLVVKGFNQ 857


>gb|PHT39301.1| hypothetical protein CQW23_22874 [Capsicum baccatum]
          Length = 2088

 Score =  221 bits (563), Expect = 7e-61
 Identities = 143/329 (43%), Positives = 186/329 (56%), Gaps = 16/329 (4%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LL SKDE +  F+ YK EVENQL+K+IK+++SDRGGEY S   +Q   E GIIH  TA Y
Sbjct: 1022 LLNSKDEAIDAFRQYKTEVENQLDKRIKMIRSDRGGEYES-PFAQICVENGIIHQTTAPY 1080

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKL- 359
            SPQSNG+A+RKN+TL +MMN +L+SSG P  L G+          +        +P +  
Sbjct: 1081 SPQSNGIAERKNRTLKEMMNALLISSGLPQNLWGEAILTANRILNRVPHSKTQSIPYEKW 1140

Query: 360  -GRVINLT*NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFRCLVINSKVF 536
             GR  NL    F   G   K      K  K   KTVD VFIGY+ +S   R LV  S+  
Sbjct: 1141 KGRKPNL--KYFKVWGCLAKVQVPIPKRVKIGPKTVDCVFIGYAKSSKACRFLVHKSEHS 1198

Query: 537  EISNNTQIESRNITFFENIFPFKPSTPL-----------PSINAQTPENVNEETRD---L 674
            +I+ NT IES N  FFENI+P+K                PS N    EN    TR     
Sbjct: 1199 DINENTVIESDNAEFFENIYPYKTRHEQSSGGSKRPRDEPSENVHNEENPRRSTRQRTST 1258

Query: 675  RL*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQSIISNNT*TLPDLPSRNKPLG 854
                + V  L     +T  + ++  D+ FWKE +++E  SI+SN+T  L DLP  NKPLG
Sbjct: 1259 SFGSDFVTFLLENEPRTFKEAMSSSDSSFWKEAVNSEIDSILSNHTWELVDLPPGNKPLG 1318

Query: 855  CKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
             KWIFK+K+KTDG+++KYK  LVVK F++
Sbjct: 1319 SKWIFKRKMKTDGTIDKYKARLVVKGFNQ 1347


>emb|CAN66637.1| hypothetical protein VITISV_011340 [Vitis vinifera]
          Length = 1316

 Score =  219 bits (558), Expect = 3e-60
 Identities = 137/321 (42%), Positives = 179/321 (55%), Gaps = 12/321 (3%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLKSKDE + KF +YK EVENQLNKKIK+L+SDRGGEY S  +     + GIIH  TA Y
Sbjct: 565  LLKSKDEAIEKFVLYKTEVENQLNKKIKVLRSDRGGEYESPFV-DICAQHGIIHETTAPY 623

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            SPQSNGVA+RKN+TL +MMN ML+SS  P  + G+          K   +   K P +L 
Sbjct: 624  SPQSNGVAERKNRTLKEMMNAMLISSSLPQNMWGEAILTANYLLNKVPKKKAEKTPYELW 683

Query: 363  RVINLT*NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFRCLVINSKVFEI 542
            +    +       G   K      K+ K   KT+D +FIGY+ NSN +R LV  S + +I
Sbjct: 684  KGRKPSYTYLRMWGCLAKVAVPPPKKVKIGPKTIDCIFIGYAHNSNAYRFLVYESNIPDI 743

Query: 543  SNNTQIESRNITFFENIFPFK-PSTPLPSINAQTPENVNEET-----RDLRL*GNLVMAL 704
              NT +ESRN +FFE++FP K    P  S      ++ NEE      R  R+        
Sbjct: 744  HKNTIMESRNASFFEDVFPCKSKEEPSSSKRMLESQDQNEEVEVEPRRSKRVRTEKSFGP 803

Query: 705  SLI**KTH*KP------INKPDALFWKETIHNEFQSIISNNT*TLPDLPSRNKPLGCKWI 866
              +      +P      +N  + L WKE I +E  SI+ N+T  L DLP   KPL  KWI
Sbjct: 804  DFLTFMLEGEPQTFKEAVNSTEGLMWKEAIKSEIDSILQNHTWELVDLPPGCKPLSSKWI 863

Query: 867  FKKKLKTDGSVEKYKTHLVVK 929
            FK+K+K DGS++KYK  LV+K
Sbjct: 864  FKRKMKVDGSIDKYKARLVIK 884


>gb|AAP50927.1| putative polyprotein [Oryza sativa Japonica Group]
 gb|ABF96500.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1240

 Score =  216 bits (551), Expect = 2e-59
 Identities = 142/350 (40%), Positives = 198/350 (56%), Gaps = 37/350 (10%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLK+KDE L  FKIYKAEVENQL +KIK L+SDRGGEY SNE + F  E GIIH +T  Y
Sbjct: 492  LLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPY 551

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            SPQSNGVA+RKN+TL +M+N ML ++G   +  G+               ++ K+P+K  
Sbjct: 552  SPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTAC--------HVLNKIPMKHK 603

Query: 363  RV----------INLT*-NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFR 509
             V          +NL+   ++GC     K     +K++K   KTVD VF+GY+++S  +R
Sbjct: 604  EVTPFEEWERKKLNLSYLRTWGCLA---KVNVPIVKKRKLGPKTVDCVFLGYAIHSVVYR 660

Query: 510  CLVINSKVFEISNNTQIESRNITFFENIFPFKPSTPLPSI--------------NAQTPE 647
             L++NS V ++   T  ESR+ TFFEN FP K ++   S               N QTPE
Sbjct: 661  FLIVNSGVPDMHAGTIFESRDATFFENEFPMKYTSSTSSKETVMPHEHFAPIEHNDQTPE 720

Query: 648  NVNEETR--DLR----------L*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQ 791
               EE    D R             + ++ L     +T  +  + PDA +WKE + +E  
Sbjct: 721  ENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMD 780

Query: 792  SIISNNT*TLPDLPSRNKPLGCKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
            SI+SN T  + + P   KP+GCKW+FKKKL+ DG++EKYK  LV K +++
Sbjct: 781  SIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 830


>gb|AAM19019.1|AC084748_9 putative polyprotein [Oryza sativa Japonica Group]
          Length = 1394

 Score =  216 bits (551), Expect = 3e-59
 Identities = 144/350 (41%), Positives = 198/350 (56%), Gaps = 37/350 (10%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLK+KDE L  FKIYKAEVENQL +KIK L+SDRGGEY SNE + F  E GIIH +T  Y
Sbjct: 618  LLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPY 677

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            SPQSNGVA+RKN+TL +M+N ML ++G   +  G+               ++ K+P+K  
Sbjct: 678  SPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGETVLTAC--------HVLNKIPMKHK 729

Query: 363  RV----------INLT*-NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFR 509
             V          +NL+   ++GC     K      K++K   KTVD VF+GY+++S  +R
Sbjct: 730  EVTPFEEWERKKLNLSYLRTWGCLA---KVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYR 786

Query: 510  CLVINSKVFEISNNTQIESRNITFFENIFPFK--PSTPLPSI------------NAQTPE 647
             L++NS V ++   T +ESR+ TFFEN FP K  PST                 N QTPE
Sbjct: 787  FLIVNSGVPDMHVGTILESRDATFFENEFPMKYTPSTSSKETVMPHEHFTPIEHNDQTPE 846

Query: 648  NVNEETR--DLR----------L*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQ 791
               EE    D R             + ++ L     +T  +  + PDA +WKE + +E  
Sbjct: 847  ENPEEDNIVDTRKSKRQRVVKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMD 906

Query: 792  SIISNNT*TLPDLPSRNKPLGCKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
            SI+SN T  + + P   KP+GCKW+FKKKL+ DG++EKYK  LV K +++
Sbjct: 907  SIMSNGTWEIVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 956


>gb|ABF99156.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1413

 Score =  216 bits (551), Expect = 3e-59
 Identities = 144/350 (41%), Positives = 198/350 (56%), Gaps = 37/350 (10%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLK+KDE L  FKIYKAEVENQL +KIK L+SDRGGEY SNE + F  E GIIH +T  Y
Sbjct: 637  LLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPY 696

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            SPQSNGVA+RKN+TL +M+N ML ++G   +  G+               ++ K+P+K  
Sbjct: 697  SPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGETVLTAC--------HVLNKIPMKHK 748

Query: 363  RV----------INLT*-NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFR 509
             V          +NL+   ++GC     K      K++K   KTVD VF+GY+++S  +R
Sbjct: 749  EVTPFEEWERKKLNLSYLRTWGCLA---KVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYR 805

Query: 510  CLVINSKVFEISNNTQIESRNITFFENIFPFK--PSTPLPSI------------NAQTPE 647
             L++NS V ++   T +ESR+ TFFEN FP K  PST                 N QTPE
Sbjct: 806  FLIVNSGVPDMHVGTILESRDATFFENEFPMKYTPSTSSKETVMPHEHFTPIEHNDQTPE 865

Query: 648  NVNEETR--DLR----------L*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQ 791
               EE    D R             + ++ L     +T  +  + PDA +WKE + +E  
Sbjct: 866  ENPEEDNIVDTRKSKRQRVVKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMD 925

Query: 792  SIISNNT*TLPDLPSRNKPLGCKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
            SI+SN T  + + P   KP+GCKW+FKKKL+ DG++EKYK  LV K +++
Sbjct: 926  SIMSNGTWEIVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 975


>dbj|BAB03249.1| polyprotein [Oryza sativa]
          Length = 1268

 Score =  216 bits (550), Expect = 3e-59
 Identities = 144/350 (41%), Positives = 198/350 (56%), Gaps = 37/350 (10%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLK+KDE L  FKIYKAEVENQL +KIK L+SDRGGEY SNE + F  E GIIH +T  Y
Sbjct: 492  LLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPY 551

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            SPQSNGVA+RKN+TL +M+N ML ++G   +  G+               ++ K+P+K  
Sbjct: 552  SPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTAC--------HVLNKIPMKHK 603

Query: 363  RV----------INLT*-NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFR 509
             V          +NL+   ++GC     K      K++K   KTVD VF+GY+++S  +R
Sbjct: 604  EVTPFEEWERKKLNLSYLRTWGCLA---KVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYR 660

Query: 510  CLVINSKVFEISNNTQIESRNITFFENIFPFK--PSTPLPSI------------NAQTPE 647
             L++NS V ++   T +ESR+ TFFEN FP K  PST                 N QTPE
Sbjct: 661  FLIVNSGVPDMHVGTILESRDATFFENEFPMKYTPSTSSKETVMPHEYFAPIEHNDQTPE 720

Query: 648  NVNEETR--DLR----------L*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQ 791
               EE    D R             + ++ L     +T  +  + PDA +WKE + +E  
Sbjct: 721  ENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMD 780

Query: 792  SIISNNT*TLPDLPSRNKPLGCKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
            SI+SN T  + + P   KP+GCKW+FKKKL+ DG++EKYK  LV K +++
Sbjct: 781  SIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 830


>gb|AAV43959.2| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1268

 Score =  216 bits (550), Expect = 3e-59
 Identities = 144/350 (41%), Positives = 198/350 (56%), Gaps = 37/350 (10%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLK+KDE L  FKIYKAEVENQL +KIK L+SDRGGEY SNE + F  E GIIH +T  Y
Sbjct: 492  LLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPY 551

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            SPQSNGVA+RKN+TL +M+N ML ++G   +  G+               ++ K+P+K  
Sbjct: 552  SPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTAC--------HVLNKIPMKHK 603

Query: 363  RV----------INLT*-NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFR 509
             V          +NL+   ++GC     K      K++K   KTVD VF+GY+++S  +R
Sbjct: 604  EVTPFEEWERKKLNLSYLRTWGCLA---KVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYR 660

Query: 510  CLVINSKVFEISNNTQIESRNITFFENIFPFK--PSTPLPSI------------NAQTPE 647
             L++NS V ++   T +ESR+ TFFEN FP K  PST                 N QTPE
Sbjct: 661  FLIVNSGVPDMHVGTILESRDATFFENEFPMKYTPSTSSKETVMPHEHFAPIEHNDQTPE 720

Query: 648  NVNEETR--DLR----------L*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQ 791
               EE    D R             + ++ L     +T  +  + PDA +WKE + +E  
Sbjct: 721  ENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMD 780

Query: 792  SIISNNT*TLPDLPSRNKPLGCKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
            SI+SN T  + + P   KP+GCKW+FKKKL+ DG++EKYK  LV K +++
Sbjct: 781  SIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 830


>gb|ABA98785.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1303

 Score =  216 bits (550), Expect = 3e-59
 Identities = 144/350 (41%), Positives = 198/350 (56%), Gaps = 37/350 (10%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLK+KDE L  FKIYKAEVENQL +KIK L+SDRGGEY SNE + F  E GIIH +T  Y
Sbjct: 637  LLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPY 696

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            SPQSNGVA+RKN+TL +M+N ML ++G   +  G+               ++ K+P+K  
Sbjct: 697  SPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTAC--------HVLNKIPMKHK 748

Query: 363  RV----------INLT*-NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFR 509
             V          +NL+   ++GC     K      K++K   KTVD VF+GY+++S  +R
Sbjct: 749  EVTPFEEWERKKLNLSYLRTWGCLA---KVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYR 805

Query: 510  CLVINSKVFEISNNTQIESRNITFFENIFPFK--PSTPLPSI------------NAQTPE 647
             L++NS V ++   T +ESR+ TFFEN FP K  PST                 N QTPE
Sbjct: 806  FLIVNSGVPDMHVGTILESRDATFFENEFPMKYTPSTSSKETVMPHEHFAPIEHNDQTPE 865

Query: 648  NVNEETR--DLR----------L*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQ 791
               EE    D R             + ++ L     +T  +  + PDA +WKE + +E  
Sbjct: 866  ENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMD 925

Query: 792  SIISNNT*TLPDLPSRNKPLGCKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
            SI+SN T  + + P   KP+GCKW+FKKKL+ DG++EKYK  LV K +++
Sbjct: 926  SIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 975


>gb|ABA96250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1287

 Score =  216 bits (549), Expect = 5e-59
 Identities = 144/350 (41%), Positives = 199/350 (56%), Gaps = 37/350 (10%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLK+KDE L  FKIYKAEVENQL +KIK L+SDRGGEY SNE + F  E GIIH +T  Y
Sbjct: 637  LLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPY 696

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            SPQSNGVA+RKN+TL +M+N ML ++G   +  G+               ++ K+P+K  
Sbjct: 697  SPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTAC--------HVLNKIPMKHK 748

Query: 363  RV----------INLT-*NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFR 509
             V          +NL+   ++GC     K      K++K   KTVD VF+GY+++S  +R
Sbjct: 749  EVTPFEEWERKKLNLSYLRTWGCLA---KVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYR 805

Query: 510  CLVINSKVFEISNNTQIESRNITFFENIFPFK--PST------------PLPSINAQTPE 647
             L++NS V ++   T +ESR+ TFFEN FP K  P+T             L   N QTPE
Sbjct: 806  FLIVNSGVPDMHVGTILESRDATFFENEFPMKYTPNTSSKETVMPHEHFALIEHNDQTPE 865

Query: 648  NVNEETR--DLR----------L*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQ 791
               EE    D R             + ++ L     +T  +  + PDA +WKE + +E  
Sbjct: 866  ENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMD 925

Query: 792  SIISNNT*TLPDLPSRNKPLGCKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
            SI+SN T  + + P   KP+GCKW+FKKKL+ DG++EKYK  LV K +++
Sbjct: 926  SIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKVRLVAKGYTQ 975


>emb|CAE05248.2| OSJNBb0115I09.10 [Oryza sativa Japonica Group]
          Length = 1321

 Score =  216 bits (549), Expect = 5e-59
 Identities = 143/350 (40%), Positives = 199/350 (56%), Gaps = 37/350 (10%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLK+KDE L  FKIYKAEVENQL +KIK L+SDRGGEY SNE + F  E GIIH +T  Y
Sbjct: 545  LLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPY 604

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            SPQSNGVA+RKN+TL +M+N ML ++G   +  G+               ++ K+P+K  
Sbjct: 605  SPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTAC--------HVLNKIPMKHK 656

Query: 363  RV----------INLT*-NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFR 509
             +          +NL+   ++GC     K      K +K   KTVD VF+GY+++S  +R
Sbjct: 657  EITPFEEWERKKLNLSYLRTWGCLA---KVNVPIAKRRKLGPKTVDCVFLGYAIHSVGYR 713

Query: 510  CLVINSKVFEISNNTQIESRNITFFENIFPFK--PSTPLPSI------------NAQTPE 647
             L++NS V ++   T +ESR+ TFFEN FP K  PST                 N QTPE
Sbjct: 714  FLIVNSGVPDMHVGTILESRDATFFENEFPMKYTPSTSSKETVMPHEHFAPIEHNDQTPE 773

Query: 648  NVNE-----ETRDLR-------L*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQ 791
               E     +TR  +          + ++ L     +T  +  + PDA +WKE + +E  
Sbjct: 774  ENPEKDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMD 833

Query: 792  SIISNNT*TLPDLPSRNKPLGCKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
            SI+SN+T  + + P   KP+GCKW+FKKKLK DG++EKYK  LV K +++
Sbjct: 834  SIMSNDTWEVVERPYGCKPVGCKWVFKKKLKPDGTIEKYKARLVAKGYTQ 883


>gb|AAL31653.1|AC079179_8 Putative polyprotein from transposon TNT [Oryza sativa]
 gb|AAP51896.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1342

 Score =  216 bits (549), Expect = 5e-59
 Identities = 143/350 (40%), Positives = 198/350 (56%), Gaps = 37/350 (10%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLK+KDE L  FKIYKAEVENQL +KIK L+SDRGGEY SNE + F  E GIIH +T  Y
Sbjct: 566  LLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPY 625

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            SPQSNGVA+RKN+TL +M+N ML ++G   +  G+               ++ K+P+K  
Sbjct: 626  SPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTAC--------HVLNKIPMKHK 677

Query: 363  RV----------INLT*-NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFR 509
             V          +NL+   ++GC     K     +K++K   KTVD VF+GY+++S  +R
Sbjct: 678  EVTPFEEWERKKLNLSYLRTWGCLA---KVNVPIVKKRKLGPKTVDCVFLGYAIHSVGYR 734

Query: 510  CLVINSKVFEISNNTQIESRNITFFENIFPFK-------PSTPLP-------SINAQTPE 647
             L++NS V ++   T  ESR+ TFFEN FP K         T +P         N QTPE
Sbjct: 735  FLIVNSGVPDMHAGTIFESRDATFFENEFPMKYTPNTSSKETVMPHEHFAPIEHNDQTPE 794

Query: 648  NVNEETR--DLR----------L*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQ 791
               EE    D R             + ++ L     +T  +  + PDA +WKE + +E  
Sbjct: 795  ENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMD 854

Query: 792  SIISNNT*TLPDLPSRNKPLGCKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
            SI+SN T  + + P   KP+GCKW+FKKKL+ DG++EKYK  LV K +++
Sbjct: 855  SIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 904


>gb|ABA95374.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1314

 Score =  215 bits (548), Expect = 7e-59
 Identities = 143/350 (40%), Positives = 198/350 (56%), Gaps = 37/350 (10%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLK+KDE L  FKIYKAEVENQL +KIK L+SDRGGEY SNE + F  E GIIH +T  Y
Sbjct: 664  LLKTKDETLHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPY 723

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            SPQSNGVA+RKN+TL +M+N ML ++G   +  G+               ++ K+P+K  
Sbjct: 724  SPQSNGVAERKNRTLTEMVNTMLDTAGLSKEWWGEAVLTAC--------HVLNKIPMKHK 775

Query: 363  RV----------INLT*-NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFR 509
             V          +NL+   ++GC     K      K++K   KTVD VF+GY+++S  +R
Sbjct: 776  EVTPFEEWERKKLNLSYLRTWGCLA---KVNVPIAKKRKLGPKTVDCVFLGYAIHSVDYR 832

Query: 510  CLVINSKVFEISNNTQIESRNITFFENIFPFK--PSTPLPSI------------NAQTPE 647
             L++NS V ++   T +ESR+ TFFEN FP K  PST                 N QTP+
Sbjct: 833  FLIVNSGVPDMHVGTILESRDATFFENEFPMKYTPSTSSKETVMPHEHFAPIEHNDQTPK 892

Query: 648  NVNEETR--DLR----------L*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQ 791
               EE    D R             + ++ L     +T  +  + PDA +WKE + +E  
Sbjct: 893  ENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVRSEMD 952

Query: 792  SIISNNT*TLPDLPSRNKPLGCKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
            SI+SN T  + + P   KP+GCKW+FKKKL+ DG++EKYK  LV K +++
Sbjct: 953  SIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 1002


>gb|AAG13538.1|AC023240_11 putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1408

 Score =  215 bits (548), Expect = 7e-59
 Identities = 144/350 (41%), Positives = 198/350 (56%), Gaps = 37/350 (10%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLK+KDE L  FKIYKAEVENQL +KIK L+SDRGGEY SNE + F  E GIIH +T  Y
Sbjct: 632  LLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPY 691

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            SPQSNGVA+RKN+TL +M+N ML ++G   +  G+               ++ K+P+K  
Sbjct: 692  SPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTAC--------HVLNKIPMKHK 743

Query: 363  RV----------INLT*-NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFR 509
             V          +NL+   ++GC     K      K++K   KTVD VF+GY+++S  +R
Sbjct: 744  EVTPFEEWERKKLNLSYLRTWGCLA---KVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYR 800

Query: 510  CLVINSKVFEISNNTQIESRNITFFENIFPFK--PSTPLPSI------------NAQTPE 647
             L++NS V ++   T +ESR+ TFFEN FP K  PST                 N QTPE
Sbjct: 801  FLIVNSGVPDMHVGTILESRDATFFENEFPMKYTPSTSSKETVMPHEHFAPIEHNDQTPE 860

Query: 648  NVNEETR--DLR----------L*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQ 791
               EE    D R             + ++ L     +T  +  + PDA +WKE + +E  
Sbjct: 861  ENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVCSEMD 920

Query: 792  SIISNNT*TLPDLPSRNKPLGCKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
            SI+SN T  + + P   KP+GCKW+FKKKL+ DG++EKYK  LV K +++
Sbjct: 921  SIMSNGTWEVVERPYGCKPIGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 970


>gb|ABA98885.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1452

 Score =  215 bits (548), Expect = 7e-59
 Identities = 144/350 (41%), Positives = 197/350 (56%), Gaps = 37/350 (10%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLK+KDE L  FKIYKAEVENQL +KIK L+SDRGGEY SNE + F  E GIIH +T  Y
Sbjct: 680  LLKTKDEALHYFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPY 739

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            SPQSNGVA+RKN+TL +M+N ML ++G   +  G+               ++ K+P+K  
Sbjct: 740  SPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTAC--------HVLNKIPMKHK 791

Query: 363  RV----------INLT-*NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFR 509
             V          +NL+   ++GC     K     +K++K   KTVD VF+GY+++S  +R
Sbjct: 792  EVTPFEEWERKKLNLSYLRTWGCLA---KVNVPIVKKRKLGPKTVDCVFLGYAIHSVGYR 848

Query: 510  CLVINSKVFEISNNTQIESRNITFFENIFPFK--PSTPLPSI------------NAQTPE 647
             L++NS V ++   T  ESR+ TFFEN FP K  PST                 N QTPE
Sbjct: 849  FLIVNSGVPDMHAGTIFESRDATFFENEFPMKYTPSTSSKETVMPHEHFAPIEHNDQTPE 908

Query: 648  NVNEETR--DLR----------L*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQ 791
               EE    D R             + ++ L     +T  +    PDA +WKE + +E  
Sbjct: 909  ENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYLSPDADYWKEAVRSEMD 968

Query: 792  SIISNNT*TLPDLPSRNKPLGCKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
            SI+SN T  + + P   KP+GCKW+FKKKL+ DG++EKYK  LV K +++
Sbjct: 969  SIMSNGTWEVVERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 1018


>gb|AAP54390.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1479

 Score =  215 bits (548), Expect = 7e-59
 Identities = 144/350 (41%), Positives = 198/350 (56%), Gaps = 37/350 (10%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLK+KDE L  FKIYKAEVENQL +KIK L+SDRGGEY SNE + F  E GIIH +T  Y
Sbjct: 703  LLKTKDEALHFFKIYKAEVENQLERKIKRLRSDRGGEYFSNEFASFCEEFGIIHEMTPPY 762

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLKLG 362
            SPQSNGVA+RKN+TL +M+N ML ++G   +  G+               ++ K+P+K  
Sbjct: 763  SPQSNGVAERKNRTLTEMVNAMLDTAGLSKEWWGEAVLTAC--------HVLNKIPMKHK 814

Query: 363  RV----------INLT*-NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFR 509
             V          +NL+   ++GC     K      K++K   KTVD VF+GY+++S  +R
Sbjct: 815  EVTPFEEWERKKLNLSYLRTWGCLA---KVNVPIAKKRKLGPKTVDCVFLGYAIHSVGYR 871

Query: 510  CLVINSKVFEISNNTQIESRNITFFENIFPFK--PSTPLPSI------------NAQTPE 647
             L++NS V ++   T +ESR+ TFFEN FP K  PST                 N QTPE
Sbjct: 872  FLIVNSGVPDMHVGTILESRDATFFENEFPMKYTPSTSSKETVMPHEHFAPIEHNDQTPE 931

Query: 648  NVNEETR--DLR----------L*GNLVMALSLI**KTH*KPINKPDALFWKETIHNEFQ 791
               EE    D R             + ++ L     +T  +  + PDA +WKE + +E  
Sbjct: 932  ENPEEDNIVDTRKSKRQRVAKSFGDDYIVYLVDDTPRTIEEAYSSPDADYWKEAVCSEMD 991

Query: 792  SIISNNT*TLPDLPSRNKPLGCKWIFKKKLKTDGSVEKYKTHLVVKLFSR 941
            SI+SN T  + + P   KP+GCKW+FKKKL+ DG++EKYK  LV K +++
Sbjct: 992  SIMSNGTWEVVERPYGCKPIGCKWVFKKKLRPDGTIEKYKARLVAKGYTQ 1041


>gb|ABA93737.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1579

 Score =  215 bits (548), Expect = 7e-59
 Identities = 137/324 (42%), Positives = 191/324 (58%), Gaps = 11/324 (3%)
 Frame = +3

Query: 3    LLKSKDEVLSKFKIYKAEVENQLNKKIKILKSDRGGEYTSNEISQFY*ELGIIHHITALY 182
            LLK+KDE L  FKIYKAEVENQL++KIK L+SDRGGE+ SNE   F  E GIIH  T  Y
Sbjct: 813  LLKTKDEALDYFKIYKAEVENQLDRKIKRLRSDRGGEFFSNEFDLFCEEHGIIHERTPPY 872

Query: 183  SPQSNGVAKRKNKTLLDMMNVMLLSSGAP*KL*GKLFFQLALFKIKFHLRIVYKLPLK-- 356
            SP+SNG+A+RKN+TL D++N ML ++G P    G+          +   R   K P +  
Sbjct: 873  SPESNGIAERKNRTLTDLVNAMLDTAGLPKAWWGEALLTSNHVLNRVPNRNKDKTPYEIW 932

Query: 357  LGRVINLT-*NSFGCEGV*LK*TYLNLKEKKKSLKTVDAVFIGYSLNSNTFRCLVINSKV 533
            +GR  +L+   ++GC     K      K++K   KTVD VF+GY+ +S  +R L++ S+V
Sbjct: 933  IGRKPSLSYLRTWGCLA---KVNVPITKKRKLGPKTVDCVFLGYAHHSIAYRFLIVKSEV 989

Query: 534  FEISNNTQIESRNITFFENIFPFK--------PSTPLPSINAQTPENVNEETRDLRL*GN 689
             ++   T +ESR+ TFFE+ FP K        PS  +PS  + TP    E T +L    +
Sbjct: 990  PDMHVGTIMESRDATFFESFFPMKDTHSGSNQPSEIIPS--SITPPEQTEHTHELVSEED 1047

Query: 690  LVMALSLI**KTH*KPINKPDALFWKETIHNEFQSIISNNT*TLPDLPSRNKPLGCKWIF 869
            +  A          K    PDA +WKE + +E  SII+N T  + + P   KP+GCKW+F
Sbjct: 1048 VSEA-------PRRKAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVF 1100

Query: 870  KKKLKTDGSVEKYKTHLVVKLFSR 941
            KKKL+ DG++EKYK  LV K +++
Sbjct: 1101 KKKLRPDGTIEKYKARLVAKGYTQ 1124