BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00054182
         (1224 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA96330.1| retrotransposon protein, putative, unclassified [...    60   4e-06

>gb|ABA96330.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 506

 Score = 60.5 bits (145), Expect = 4e-06
 Identities = 27/64 (42%), Positives = 42/64 (65%)
 Frame = -1

Query: 1116 KHRGLPPKWISWTKLIMSSNDSAVNPVGVSG**FKHKQGLWQGNPIAP*FVILVIDIFAR 937
            KH G PPKWI W +++ S+  SAV   GV G  FK ++G+ QG+P++P   +L  ++  R
Sbjct: 92   KHMGFPPKWIEWVQMVFSTASSAVLLNGVPGNSFKCRRGVRQGDPLSPLLFVLGAELLQR 151

Query: 936  MMNK 925
            ++NK
Sbjct: 152  IINK 155