BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00054153
         (450 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|OMO55679.1| reverse transcriptase [Corchorus capsularis]            58   9e-07

>gb|OMO55679.1| reverse transcriptase [Corchorus capsularis]
          Length = 1701

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
 Frame = +1

Query: 145  REAIAEWTFNYQELTKGKGAGRRQHIDRGGWKTPEAEQLKVNTNGAW-TKKNNAGIGYIT 321
            R+A++E+ F      K       +      W  P    LK+N++G++ TK N AGIG++ 
Sbjct: 1507 RKAVSEFLFIQLLHQKNLQNDNNEENQEQKWLRPPEGWLKINSDGSFCTKTNLAGIGFVV 1566

Query: 322  RDHEGTALNAVAANLTSHSPLLTEMLAINSALGYL 426
            R+H+G  L A     ++ + L+TE LA+  A+GY+
Sbjct: 1567 RNHDGQVLQATGKMCSATTALITEALALREAVGYI 1601