BLASTX nr result

ID: Cheilocostus21_contig00053014 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00053014
         (630 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009395218.1| PREDICTED: zinc finger CCCH domain-containin...    71   5e-11
ref|XP_009396540.1| PREDICTED: zinc finger CCCH domain-containin...    59   7e-07

>ref|XP_009395218.1| PREDICTED: zinc finger CCCH domain-containing protein 20-like [Musa
           acuminata subsp. malaccensis]
          Length = 293

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 55/147 (37%), Positives = 59/147 (40%), Gaps = 27/147 (18%)
 Frame = +1

Query: 1   RRVCFFAHSPEQLRVVVPTSPKDGGAAXXXXXXXXXXXXXXXXXXXXXXXXXX----VAA 168
           RRVCFFAH+PEQLR+V+P SP   G                                V A
Sbjct: 157 RRVCFFAHTPEQLRIVLPPSPTSSGKIGVNMFSSPTSTLALLSSPSDGSPPLSPVDDVLA 216

Query: 169 AMRALQLSKVRPGLPFGRA------------PLSEGRRAEA-----------EDWSVDVR 279
           AMR LQL KVR  LPFG              P + GRRA A           EDW     
Sbjct: 217 AMRNLQLGKVRSALPFGTRSGFASPASLESDPATRGRRAAAAVADQSAPRLLEDWGRQEE 276

Query: 280 AXXXXXXXXXXXXGAPDLRWVSELVKD 360
           A             APDL WVSELVKD
Sbjct: 277 AAEP----------APDLAWVSELVKD 293


>ref|XP_009396540.1| PREDICTED: zinc finger CCCH domain-containing protein 2-like [Musa
           acuminata subsp. malaccensis]
          Length = 300

 Score = 59.3 bits (142), Expect = 7e-07
 Identities = 52/141 (36%), Positives = 56/141 (39%), Gaps = 21/141 (14%)
 Frame = +1

Query: 1   RRVCFFAHSPEQLRVVVPTSP----KDGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXVAA 168
           RRVCFFAHSP QLRVV+P SP    KDG                             V  
Sbjct: 172 RRVCFFAHSPMQLRVVLPPSPTSPGKDGARVTLSPTSTLAPAPMSPPSDGSSPPVSPVGV 231

Query: 169 -----AMRALQLSKVRPGLP------------FGRAPLSEGRRAEAEDWSVDVRAXXXXX 297
                AMR LQLSKV    P            FG AP++ G R   ED +   R      
Sbjct: 232 DEVVKAMRKLQLSKVSSAPPFGTRSGMGFLSAFGSAPVTPGTR---EDEAAKRR------ 282

Query: 298 XXXXXXXGAPDLRWVSELVKD 360
                    PDL WVSELVKD
Sbjct: 283 ---EEEEAVPDLNWVSELVKD 300


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