BLASTX nr result

ID: Cheilocostus21_contig00052088 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00052088
         (438 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009410943.1| PREDICTED: 60S ribosomal protein L18a-like p...    69   8e-12

>ref|XP_009410943.1| PREDICTED: 60S ribosomal protein L18a-like protein [Musa acuminata
           subsp. malaccensis]
          Length = 177

 Score = 69.3 bits (168), Expect = 8e-12
 Identities = 49/129 (37%), Positives = 52/129 (40%), Gaps = 5/129 (3%)
 Frame = -2

Query: 374 MNSGEGKNHGAMADPSXXXXXXXXXXXXXXXXXXY-----GTFGVPDFSQPTIGFXXXXX 210
           M+SGEGK+ GAMADPS                        GTFGVPD+SQP IGF     
Sbjct: 1   MSSGEGKSRGAMADPSSHHPQQAQPQPQPQPQPLQFQSPYGTFGVPDYSQPAIGFPQPVA 60

Query: 209 XXXXXXXXXXXXXXXXXXXXXXXXXAHGYQAVPAGYVAVAEXXXXXXXXXXXXXXXXGWF 30
                                    AHGYQ VP GY  VAE                GWF
Sbjct: 61  PPGVGVGVAPSAPAYPPYSAAPQYYAHGYQVVP-GYAGVAEGWPLRLRRLPCCGLGLGWF 119

Query: 29  LFIMGFFLA 3
           LFI GFFLA
Sbjct: 120 LFITGFFLA 128


Top