BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00052020
         (976 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PKA60107.1| Retrovirus-related Pol polyprotein from transposo...    54   6e-13
gb|PKA49930.1| Retrovirus-related Pol polyprotein from transposo...    59   6e-11
gb|PKU88027.1| Retrovirus-related Pol polyprotein from transposo...    62   8e-09
gb|PKU65093.1| Retrovirus-related Pol polyprotein from transposo...    66   2e-08
gb|PKA49422.1| Retrovirus-related Pol polyprotein from transposo...    62   2e-08
ref|XP_012575528.1| PREDICTED: uncharacterized protein LOC105853...    64   5e-08
ref|XP_020674310.1| uncharacterized protein LOC110093684 [Dendro...    64   6e-08
gb|PKU87215.1| Retrovirus-related Pol polyprotein from transposo...    60   1e-07
gb|PKU86598.1| Retrovirus-related Pol polyprotein from transposo...    65   1e-07
gb|PKU62783.1| Retrovirus-related Pol polyprotein from transposo...    64   1e-07
gb|KYP31892.1| Retrovirus-related Pol polyprotein from transposo...    62   3e-07
gb|PKU83464.1| Retrovirus-related Pol polyprotein from transposo...    59   4e-07
gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposo...    56   5e-07
gb|AGV40508.1| hypothetical protein [Phaseolus vulgaris]               58   7e-07
gb|PKU85564.1| Retrovirus-related Pol polyprotein from transposo...    62   8e-07
gb|PKU81996.1| Retrovirus-related Pol polyprotein from transposo...    61   9e-07
gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Tri...    57   9e-07
gb|KYP36691.1| Retrovirus-related Pol polyprotein from transposo...    60   1e-06
gb|PKU68311.1| Retrovirus-related Pol polyprotein from transposo...    62   1e-06
gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopsc...    60   1e-06

>gb|PKA60107.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 696

 Score = 53.9 bits (128), Expect(3) = 6e-13
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
 Frame = +1

Query: 211 EHMSPASWHEQLDHPSMLV*HII--KNLQSSYVQHNSFINMPCKKGS*KSILPFTLS*HS 384
           E  +   WH +L HP +   H I  K    +     S I   C K      L F+ S  +
Sbjct: 449 ERTTKLLWHARLGHPCLRTVHQIIQKYGLPTSPPTTSRICSACMKAK-SHKLSFSSSTCT 507

Query: 385 SSFPV-IIHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF 549
           S+ P+ +I+ D+  P PI SN G+S Y  F+D+FS FT +F ++R+S +   F++F
Sbjct: 508 STSPLELIYSDIWGPAPIISNEGFSYYFIFVDDFSKFTWLFPIKRKSDLVDIFLSF 563



 Score = 38.1 bits (87), Expect(3) = 6e-13
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = +3

Query: 36  KK*LSIHQSTRTRDNIVSSEFHLDKCFVKNQTIESTKFCEEIRNGFYHIQPPT 194
           K  LS+ Q T   DN V  EFH  +CFVK++         E +NG YHI  P+
Sbjct: 392 KNLLSVRQFTH--DNNVLFEFHPYECFVKDRATGKILLRGETKNGLYHIPVPS 442



 Score = 30.8 bits (68), Expect(3) = 6e-13
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 599 GDYQSIYHHLNN*GITLHISYHHT 670
           G+YQ+++ HLN+ GIT  +S  HT
Sbjct: 584 GEYQALHRHLNSSGITHRVSCPHT 607


>gb|PKA49930.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 475

 Score = 58.9 bits (141), Expect(2) = 6e-11
 Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
 Frame = +1

Query: 211 EHMSPASWHEQLDHPSMLV*H--IIKNLQSSYVQHNSFINMPCKKGS*KSILPFTLS*HS 384
           E  + +SWH +L HPS+ + H  I K          S I   C K      LPF+L+  +
Sbjct: 360 ERTNKSSWHARLGHPSLRIVHHIICKYGLPISPSSKSRICSACMKAK-SHKLPFSLATSA 418

Query: 385 SSFPV-IIHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF 549
           S  P+ +I+ D+  P PI SN  +S YV F+ +FS FT  F M+ +S +   F+ F
Sbjct: 419 SYSPLELIYSDIWGPAPIASNGDFSYYVIFVGDFSKFTLFFPMKYKSDLLNIFLRF 474



 Score = 37.7 bits (86), Expect(2) = 6e-11
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +3

Query: 36  KK*LSIHQSTRTRDNIVSSEFHLDKCFVKNQTIESTKFCEEIRNGFYHI--QPPTFIG 203
           K  LS+ Q T   DN V  EFH  KCFVK+Q           +N  YH+   P  FIG
Sbjct: 304 KNLLSVRQFTH--DNNVIFEFHPHKCFVKDQANRKILLRGGTKNSLYHLPQSPTAFIG 359


>gb|PKU88027.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1150

 Score = 61.6 bits (148), Expect(2) = 8e-09
 Identities = 38/108 (35%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
 Frame = +1

Query: 232 WHEQLDHPSMLV*HIIKNLQSS-YVQHNSFINMPCKKGS*-KSILPFTLS*HSSSFPVII 405
           WH +L HPS  + H I +  S  ++    F+   C K    K++L  + +  + S   +I
Sbjct: 444 WHNRLGHPSHRIFHSIASCNSQLHIDKKEFVCHACNKAKQHKAVLELSRN-RAKSVLDLI 502

Query: 406 HLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF 549
           H DV  P P  SN+G   YV FID++S FT +F M+++S +   FV F
Sbjct: 503 HSDVWGPAPALSNSGMLYYVLFIDDYSRFTWLFPMRQKSEVFNIFVNF 550



 Score = 27.7 bits (60), Expect(2) = 8e-09
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 60  STRTRDNIVSSEFHLDKCFVKNQTIESTKFCEEIRNGFYHIQPP 191
           S  TRDN ++  F       K+ T     F    R+G Y IQPP
Sbjct: 383 SQLTRDNNIAVTFTPSGFVFKDLTTHQVIFQGPCRDGLYPIQPP 426


>gb|PKU65093.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1350

 Score = 65.9 bits (159), Expect(2) = 2e-08
 Identities = 39/108 (36%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
 Frame = +1

Query: 232 WHEQLDHPSMLV*HIIKNLQSSY-VQHNSFINMPCKKGS*KSILPFTLS*HSSSFPV-II 405
           WH++L HP   + H +     S  + HN      C        LPF+   H +S P+ I+
Sbjct: 456 WHQRLGHPHSRIIHAVSASDKSLNIPHNFSFCSACTTSKGHR-LPFSNKNHRTSIPLAIV 514

Query: 406 HLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF 549
           H DV  P P+ SN G+  YV FID+FS FT +F M+ +S +   F  F
Sbjct: 515 HTDVWGPAPVPSNQGFLYYVVFIDDFSRFTWVFPMRHKSEVFEIFQKF 562



 Score = 22.3 bits (46), Expect(2) = 2e-08
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 60  STRTRDNIVSSEFHLDKCFVKNQTIESTKFCEEIRNGFYHIQ 185
           S  T+DN VS  F+     +K+     T      R G Y IQ
Sbjct: 393 SNLTQDNNVSVNFNPSGFAIKDLKTNRTLLTGPNRRGLYPIQ 434


>gb|PKA49422.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Apostasia shenzhenica]
          Length = 494

 Score = 62.4 bits (150), Expect(2) = 2e-08
 Identities = 45/118 (38%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
 Frame = +1

Query: 211 EHMSPASWHEQLDHPSMLV*HII--KNLQSSYVQHNSFINMPCKKGS*KSILPFTLS*HS 384
           E  +  SWH +L HPS+   H I  K    +     S I   C K      L F+ S  +
Sbjct: 44  ERTTKLSWHARLGHPSLRTVHQIIQKYGLPTSPPTTSRICSACMKAK-SHKLSFSSSTCT 102

Query: 385 SSFPV-IIHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF*N 555
           SS P+ +I+ D+  P PI SN G+S YV F+D FS FT +F M+R+S +   F+ F N
Sbjct: 103 SSSPLELIYSDIWGPAPIISNEGFSYYVIFVDNFSKFTWLFPMKRKSDLIDIFLNFQN 160



 Score = 25.4 bits (54), Expect(2) = 2e-08
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 599 GDYQSIYHHLNN*GITLHISYHHT 670
           G+YQ+++ HL + GI   +S  HT
Sbjct: 179 GEYQALHRHLYSSGIIHQVSCPHT 202


>ref|XP_012575528.1| PREDICTED: uncharacterized protein LOC105853050 [Cicer arietinum]
          Length = 1108

 Score = 64.3 bits (155), Expect(2) = 5e-08
 Identities = 41/114 (35%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
 Frame = +1

Query: 229 SWHEQLDHPS-MLV*HIIKN--LQSSYVQHNSFINMPCKKGS*KSILPF-TLS*HSSSFP 396
           SWH +L HP+  ++  ++KN  ++ S   H +F    C+ G     LPF   S H+    
Sbjct: 384 SWHRRLGHPNNKVLDRVLKNCNVKLSPSDHFNFCEA-CQYGK-MHFLPFKNSSSHAKKIL 441

Query: 397 VIIHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF*NM 558
            ++H DV  P P+TS++G+  YV F+D+FS FT I+ ++++S+I   F  F NM
Sbjct: 442 ELVHADVWGPAPVTSSSGFKYYVHFLDDFSRFTWIYPLKQKSNIAQAFTQFKNM 495



 Score = 22.3 bits (46), Expect(2) = 5e-08
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +3

Query: 60  STRTRDNIVSSEFHLDKCFVKNQTIESTKFCEEIRNGFYHI 182
           S  T  N +  EF  + CFVK++          +++G Y +
Sbjct: 328 SKLTAHNNILVEFDANCCFVKDKLTGKAILRGTLKDGLYQL 368


>ref|XP_020674310.1| uncharacterized protein LOC110093684 [Dendrobium catenatum]
          Length = 2181

 Score = 63.5 bits (153), Expect(2) = 6e-08
 Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
 Frame = +1

Query: 232  WHEQLDHPSMLV*HIIKNLQSSY-VQHNSFINMPCKKGS*KSILPFTLS*HSSSFPV-II 405
            WH++L HP   + H +     S  + HN      C        LPF+   H +  P+ I+
Sbjct: 1511 WHQRLGHPHSRIIHAVSASDKSLNIPHNFSFCSACTTSKGHR-LPFSNKNHRTFIPLAIV 1569

Query: 406  HLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF 549
            H DV  P P+ SN G+  YV FID+FS FT +F M+ +S +   F  F
Sbjct: 1570 HTDVWGPAPVPSNQGFLYYVVFIDDFSRFTWVFPMRHKSEVFEIFQKF 1617



 Score = 22.7 bits (47), Expect(2) = 6e-08
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +3

Query: 60   STRTRDNIVSSEFHLDKCFVKNQTIESTKFCEEIRNGFYHIQ 185
            S  T+DN VS  F+     +K+     T      R G Y IQ
Sbjct: 1448 SNLTQDNNVSVNFNPSGFAIKDLKTNKTLLTGPNRRGLYPIQ 1489


>gb|PKU87215.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1129

 Score = 60.1 bits (144), Expect(2) = 1e-07
 Identities = 36/108 (33%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
 Frame = +1

Query: 232 WHEQLDHPSMLV*HIIKNLQSSYVQHN-SFINMPCKKG-S*KSILPFTLS*HSSSFPVII 405
           WH++L HP   +   I N  + +  +N S     CK   S K +   +L+ ++++   ++
Sbjct: 456 WHQRLGHPHDRIMKTIANKTAHFSMNNFSVFCSSCKASKSHKRVFEKSLN-NTNAILDLV 514

Query: 406 HLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF 549
           H DV  P P+TSN G+  YV F+D+FS F+ IF M+ ++ + T F+ F
Sbjct: 515 HSDVWGPAPVTSNQGFRYYVLFVDDFSRFSWIFPMRTKTEVLTNFIVF 562



 Score = 25.4 bits (54), Expect(2) = 1e-07
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 60  STRTRDNIVSSEFHLDKCFVKNQTIESTKFCEEIRNGFYHIQ 185
           S  TRDN +S  F+     VK+   + T      +NG Y IQ
Sbjct: 394 SKLTRDNHISITFNPTGFVVKDLKTQETLLHGPCKNGLYPIQ 435


>gb|PKU86598.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1356

 Score = 64.7 bits (156), Expect = 1e-07
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
 Frame = +1

Query: 226 ASWHEQLDHPSMLV*HIIKNLQSS-YVQHNSFIN----MPCKKGS*KSILPFTLS*HSSS 390
           A WH++L HP + V H I +   S ++QH+S I+    + CK       LPF LS     
Sbjct: 452 ADWHDRLGHPHLRVLHKIAHSNPSLHIQHSSDISCSTCIQCKSHK----LPFELSKTRCQ 507

Query: 391 FPV-IIHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF 549
            P+ ++H DV  P P  S  GY  +V F+D+FS +T +F +  +S + T F+ F
Sbjct: 508 TPLELVHTDVWGPAPTISTQGYRFFVIFVDDFSRYTWLFPLIHKSDVTTTFIHF 561


>gb|PKU62783.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1230

 Score = 64.3 bits (155), Expect = 1e-07
 Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 5/111 (4%)
 Frame = +1

Query: 232 WHEQLDHPSMLV*HIIKNLQSSY----VQHNSFINMPCKKGS*KSILPFTLS*HSSSFPV 399
           WH +L HP+     ++KN+        +  ++   +PCK+     I+ F  S + S+ P+
Sbjct: 327 WHHRLGHPND---RVMKNISQCNPLLKINTDNITCLPCKQSKCHKIV-FENSNNRSNAPL 382

Query: 400 -IIHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF 549
            +IH DV  P P+TSN GY  YV F+D+FS F+ IF M+ +S +   FV F
Sbjct: 383 SLIHSDVWGPAPVTSNQGYRYYVLFVDDFSRFSWIFPMKEKSEVFDIFVLF 433


>gb|KYP31892.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 264

 Score = 61.6 bits (148), Expect = 3e-07
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
 Frame = +1

Query: 229 SWHEQLDHPS-MLV*HIIK--NLQSSYVQHNSFINMPCKKGS*KSILPF-TLS*HSSSFP 396
           SWH +L HP+   +  ++K  N++ S   H +F    C+ G     LPF T S H+    
Sbjct: 31  SWHRRLGHPNNKFLDRVLKSCNVKLSPSDHFNFCEA-CQYGK-MHFLPFKTSSSHAKEIF 88

Query: 397 VIIHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF*NM 558
            ++H DV  P P+TS +G+  YV F+D+FS FT I+ ++ +S     F  F NM
Sbjct: 89  ELVHTDVWGPAPVTSPSGFKYYVHFLDDFSRFTWIYPLKHKSDTAQAFTQFKNM 142


>gb|PKU83464.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 802

 Score = 58.5 bits (140), Expect(2) = 4e-07
 Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
 Frame = +1

Query: 229 SWHEQLDHPS-MLV*HIIKNLQSSYVQHNSFINMPCKKG-S*KSILPFTLS*HSSSFPVI 402
           +WH +L HP+  ++ +I K   S  +++  F    C++  + K + P +++ HSS    +
Sbjct: 452 TWHHRLGHPNDRVLTYIAKCNPSLSIRNAQFSCSSCQQAKAHKLVFPNSITRHSSILS-L 510

Query: 403 IHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF*N 555
           IH DV  P P+ S  GY  YV F+D++S F+ +F M+ +S +   FV F N
Sbjct: 511 IHCDVWGPAPVPSVQGYRYYVLFVDDYSRFSWLFPMKFKSEVYNIFVLFKN 561



 Score = 25.0 bits (53), Expect(2) = 4e-07
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +3

Query: 60  STRTRDNIVSSEFHLDKCFVKNQTIESTKFCEEIRNGFYHIQPP 191
           S  T+DN +S  F      +K+QT   T       NG Y ++ P
Sbjct: 391 SKLTKDNNISICFDSSGFRIKDQTTHQTLLQGPCENGLYPVRIP 434


>gb|KYP50444.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1165

 Score = 55.8 bits (133), Expect(2) = 5e-07
 Identities = 37/114 (32%), Positives = 68/114 (59%), Gaps = 4/114 (3%)
 Frame = +1

Query: 229 SWHEQLDHP-SMLV*HIIK--NLQSSYVQHNSFINMPCKKGS*KSILPFTLS*HSSSFPV 399
           +WH +L HP S ++  ++K  N+++S  ++  F    C+ G   + LPF  S   +  P+
Sbjct: 366 TWHRKLGHPNSKVLNEVMKLCNIEASPCENFEFCEA-CQFGKAHN-LPFQNSVSCAKEPL 423

Query: 400 -IIHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF*NM 558
            ++H DV  P PI+S +G+  YV F+D++S FT I+ ++++S +   F+ F N+
Sbjct: 424 DLVHSDVWGPAPISSVSGFKYYVLFLDDWSRFTWIYPLKQKSDVFQAFIQFRNL 477



 Score = 27.3 bits (59), Expect(2) = 5e-07
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +3

Query: 18  YLTLSLKK*LSIHQSTRTRDNIVSSEFHLDKCFVKNQTIESTKFCEEIRNGFYHI 182
           Y+    K  LSI  S  T DN +  EFH   CFVK++         +I++G Y +
Sbjct: 294 YVPKITKNLLSI--SKLTFDNDIYVEFHDVACFVKDKLTGRILLEGKIKDGLYQL 346


>gb|AGV40508.1| hypothetical protein [Phaseolus vulgaris]
          Length = 1121

 Score = 57.8 bits (138), Expect(2) = 7e-07
 Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 4/130 (3%)
 Frame = +1

Query: 181 SNHQLS*VFKEHMSPASWHEQLDHPSMLV*HIIKNLQSS---YVQHNSFINMPCKKGS*K 351
           S H +S +  E +S   WHE+  H S    +I+K + +S   +V +N      C +G   
Sbjct: 343 SVHSMSFI-AEPISVNQWHERFGHCSF---NILKKILASCDIFVSNNIVFCSSCVRGKCH 398

Query: 352 SILPFTLS*HSSSFPV-IIHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI 528
             LPF  S H+ S P+ +I+ DV  P  +  +NG   YV F+D +S FT ++L+  +S +
Sbjct: 399 Q-LPFYNSTHTYSQPLRLIYTDVWGPTSVLVSNGARYYVSFVDAYSKFTWLYLIHHKSQV 457

Query: 529 *TCFVTF*NM 558
              F TF N+
Sbjct: 458 KNVFKTFKNL 467



 Score = 25.0 bits (53), Expect(2) = 7e-07
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 72  RDNIVSSEFHLDKCFVKNQTIESTKFCEEIRNGFY 176
           RDN V  EFH + C+V +Q  +       +++  Y
Sbjct: 297 RDNNVIFEFHSNSCYVLDQETKRVLLQGYLKDSLY 331


>gb|PKU85564.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 909

 Score = 62.0 bits (149), Expect = 8e-07
 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 4/110 (3%)
 Frame = +1

Query: 232 WHEQLDHPSMLV*HIIKNL-QSSYVQHNSFINMPCKKGS*KSI--LPFTLS*HSSSFPV- 399
           WH++L HP      I+KN+ QS+   H S +N  C       +  LPF +S   ++ P+ 
Sbjct: 165 WHDRLGHPHF---KILKNIAQSNSDLHISSVNSSCTTCIQCKLHKLPFEISASRTNTPLS 221

Query: 400 IIHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF 549
           ++H DV  P PI S NG+  +V F+D+FS +T +F +  +S + + F+TF
Sbjct: 222 LVHSDVWGPSPICSTNGFRFFVIFVDDFSRYTWLFPIIHKSEVTSTFITF 271


>gb|PKU81996.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1188

 Score = 61.2 bits (147), Expect(2) = 9e-07
 Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
 Frame = +1

Query: 232 WHEQLDHPSMLV*HIIK----NLQSSYVQHNSFINMPCKKGS*KSILPFTLS*HSSSFPV 399
           WH++  HPS    H I     +L    +  N      C K      LPF  S H S+FP+
Sbjct: 285 WHKRTGHPSQRTLHSISAANPHLNIKVLSQNCHT---CNKAKTHK-LPFDSSQHRSTFPL 340

Query: 400 -IIHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF 549
            ++H DV  P PI SN+G+  YV F D+++ FT +F ++ +S + T F +F
Sbjct: 341 ELLHSDVWGPAPIVSNSGFLYYVLFTDDYTRFTWLFPLKHKSEVTTVFKSF 391



 Score = 21.2 bits (43), Expect(2) = 9e-07
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 60  STRTRDNIVSSEFHLDKCFVKNQTIESTKFCEEIRNGFYHIQPPT 194
           S  T+DN ++  F+      K+     T      R G Y I+ PT
Sbjct: 224 SQLTKDNNIAIIFNPSGFLFKDLMTHRTILQGPCREGLYPIRTPT 268


>gb|PNY02796.1| copia protein (gag-int-pol protein), partial [Trifolium pratense]
          Length = 1009

 Score = 57.4 bits (137), Expect(2) = 9e-07
 Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
 Frame = +1

Query: 229 SWHEQLDHPS-MLV*HIIK--NLQSSYVQHNSFINMPCKKGS*KSILPFTLS*HSSSFPV 399
           SWH +L HP+  ++  ++K  N+++S      F    C+ G    +LPF  S   +  P+
Sbjct: 166 SWHRKLGHPNNKVLDKVLKHCNVKTSSSDQFKFCEA-CQFGK-LHLLPFKSSYSHAQEPL 223

Query: 400 -IIHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF 549
            +IH DV  P PI SN+G+  YV FID+FS FT I+ ++++S     F  F
Sbjct: 224 DLIHTDVWGPAPIMSNSGFKYYVHFIDDFSRFTWIYPLKQKSETIHAFTQF 274



 Score = 25.0 bits (53), Expect(2) = 9e-07
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 60  STRTRDNIVSSEFHLDKCFVKNQTIESTKFCEEIRNGFYHI 182
           S  T DN +  EF  D C VK++         +++ G Y +
Sbjct: 106 SKLTADNNIIVEFDADCCSVKDKLTGKALLKGKLKEGLYQV 146


>gb|KYP36691.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 287

 Score = 60.5 bits (145), Expect = 1e-06
 Identities = 36/112 (32%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
 Frame = +1

Query: 229 SWHEQLDHPSM-LV*HIIKNLQSSYVQHNSFINMPCKKGS*KSILPFTLS*HSSSFPV-I 402
           SWH++L HPS  ++  ++KN  +     +S       +     + PF  S   +  P+ +
Sbjct: 142 SWHKRLGHPSSKILEQVLKNCYTKVPSRDSLSFCEACQFGKSHLFPFKSSISRAKEPLDL 201

Query: 403 IHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF*NM 558
           IH +VR P PI+S++G+  YV F+D+FS FT IF ++++  +   F+ F +M
Sbjct: 202 IHTNVRGPAPISSSSGFIYYVHFLDDFSRFTWIFPLKQKPDVLKNFMKFKSM 253


>gb|PKU68311.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Dendrobium catenatum]
          Length = 1211

 Score = 61.6 bits (148), Expect = 1e-06
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
 Frame = +1

Query: 217 MSPASWHEQLDHPSM-LV*HIIKNLQSSYVQHNSFINMPCKKGS*KSILPFTLS*HSSSF 393
           MS + WH +L HPS+ ++ HI KN    ++   S    PC +      L F +S +    
Sbjct: 299 MSSSQWHNRLGHPSLSILQHISKNNPDLHISSTSISCTPCNQCKGHK-LQFPISENRKQA 357

Query: 394 PV-IIHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF 549
           P+ ++H DV  P P+ S+ G+  YV F+D++S F  +F +  +S +   F+ F
Sbjct: 358 PLELLHSDVWGPSPVPSHQGFRYYVIFVDDYSRFIWLFPIMFKSDVTNIFINF 410


>gb|PNX76291.1| gag/pol polyprotein - maize retrotransposon Hopscotch, partial
           [Trifolium pratense]
          Length = 835

 Score = 60.1 bits (144), Expect(2) = 1e-06
 Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
 Frame = +1

Query: 229 SWHEQLDHPSMLV*HIIK---NLQSSYVQHNSFINMPCKKGS*KSILPFTLS*-HSSSFP 396
           SWH +L HP+  V  I+    N++ S     SF    C+ G     LPF  S  H+    
Sbjct: 442 SWHRKLGHPNNKVLDIVLKSCNVKLSPSDQFSFCEA-CQYGK-MHFLPFKTSFSHAKEIL 499

Query: 397 VIIHLDVRSPIPITSNNGYS*YVPFIDEFS*FT*IFLMQRQSSI*TCFVTF*NM 558
            ++H DV  P PI S++G+  YV FID+F+ FT I+ ++++S     F+ F NM
Sbjct: 500 ELVHTDVWGPAPIISSSGFKYYVHFIDDFTRFTWIYPLKQKSDTAHAFIQFKNM 553



 Score = 21.9 bits (45), Expect(2) = 1e-06
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +3

Query: 18  YLTLSLKK*LSIHQSTRTRDNIVSSEFHLDKCFVKNQTIESTKFCEEIRNGFYHI 182
           Y+    K  LS+  S    DN +  EF  + CFVK++          +++G Y +
Sbjct: 376 YVPKITKNLLSV--SKLAADNNILVEFDENCCFVKDKLTGKAILRGILKDGLYQL 428