BLASTX nr result
ID: Cheilocostus21_contig00051657
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00051657
(618 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PKA48247.1| Retrovirus-related Pol polyprotein from transposo... 62 8e-11
gb|PKA49505.1| Retrovirus-related Pol polyprotein from transposo... 60 4e-10
gb|PKU84004.1| Retrovirus-related Pol polyprotein from transposo... 54 6e-09
ref|XP_020424502.1| uncharacterized protein LOC109950345 [Prunus... 64 7e-09
ref|XP_019239816.1| PREDICTED: uncharacterized protein LOC109219... 54 1e-08
gb|KYP71076.1| Retrovirus-related Pol polyprotein from transposo... 50 1e-08
gb|PKU60283.1| Retrovirus-related Pol polyprotein from transposo... 52 2e-08
gb|PNX71838.1| retrovirus-related Pol polyprotein from transposo... 46 2e-08
ref|XP_020114471.1| uncharacterized protein LOC109728471 isoform... 55 3e-08
ref|XP_020114480.1| uncharacterized protein LOC109728471 isoform... 55 3e-08
ref|XP_020114487.1| uncharacterized protein LOC109728471 isoform... 55 3e-08
ref|XP_020114543.1| uncharacterized protein LOC109728471 isoform... 55 3e-08
ref|XP_020114563.1| uncharacterized protein LOC109728471 isoform... 55 3e-08
ref|XP_019231431.1| PREDICTED: uncharacterized protein LOC109212... 53 4e-08
ref|XP_016489332.1| PREDICTED: uncharacterized protein LOC107809... 60 5e-08
ref|XP_019173195.1| PREDICTED: uncharacterized protein LOC109168... 50 1e-07
gb|OMO89784.1| Integrase, catalytic core [Corchorus capsularis] 54 1e-07
gb|PKU80351.1| Retrovirus-related Pol polyprotein from transposo... 53 1e-07
gb|PKU68279.1| Retrovirus-related Pol polyprotein from transposo... 55 1e-07
gb|PKU70208.1| Retrovirus-related Pol polyprotein from transposo... 49 1e-07
>gb|PKA48247.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 250
Score = 61.6 bits (148), Expect(2) = 8e-11
Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Frame = +2
Query: 176 TRSFPDIYNNTLPHQAR-----KHGLSQALLASLSPIKPTCFSLVFKDLGSRAAMAIEFD 340
TR DIY T P KH AL+AS+ + TCF+ KD A MA EFD
Sbjct: 14 TRLLADIYQQTEPVTLSLITYSKHPFPTALVASIHMPEHTCFTQASKDPAWCATMATEFD 73
Query: 341 ALFVIIHG---LLP**PSTNFIGY**VFHLKYKANGTI*RYQACLIAKAFSQQ*SINF 505
AL + +G L+P PS N +G V+ LK++A+G+I RY+ L+ K QQ +++
Sbjct: 74 AL--LRNGTWDLVPRTPSMNIVGCKWVYKLKHQADGSIERYKVRLVVKGHHQQPGLDY 129
Score = 33.1 bits (74), Expect(2) = 8e-11
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 523 VDILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
+D+ FL G+L+ETV++EQP F + +P H
Sbjct: 159 LDVSTAFLYGSLKETVYMEQPPGFTHPLYPSH 190
>gb|PKA49505.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Apostasia shenzhenica]
Length = 272
Score = 60.1 bits (144), Expect(2) = 4e-10
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 8/113 (7%)
Frame = +2
Query: 191 DIYNNTLPHQA-----RKHGLSQALLASLSPIKPTCFSLVFKDLGSRAAMAIEFDALFVI 355
DIY T P KH LS AL+AS+ +P+CF+ KD RA M EFDAL +
Sbjct: 19 DIYQQTEPVTLYLMTDSKHPLSTALVASIHMPEPSCFTQASKDPAWRATMTTEFDAL--L 76
Query: 356 IHG---LLP**PSTNFIGY**VFHLKYKANGTI*RYQACLIAKAFSQQ*SINF 505
+G L+P S N + V+ LK++A+G+I RY+ L+AK QQ +++
Sbjct: 77 RNGTWDLIPRTLSMNVVRCKWVYKLKHQADGSIKRYKTRLVAKGCHQQPGLDY 129
Score = 32.3 bits (72), Expect(2) = 4e-10
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +1
Query: 523 VDILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
+D+ N FL G+L+ETV++EQ F + +P H
Sbjct: 159 LDVSNAFLHGSLKETVYMEQLSGFTHPLYPSH 190
>gb|PKU84004.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 946
Score = 53.5 bits (127), Expect(2) = 6e-09
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 LLASLSPIKPTCFSLVFKDLGSRAAMAIEFDALFVI-IHGLLP**PSTNFIGY**VFHLK 424
L S P+ P+CFS K R AM++EF+AL L+P P N +G +F K
Sbjct: 535 LQTSTVPVTPSCFSEAVKHEVWRKAMSLEFEALQQQGTWVLVPSSPGLNVLGNKWIFRTK 594
Query: 425 YKANGTI*RYQACLIAKAFSQQ*SINF 505
Y ++G++ RY+A L+AK F Q+ I++
Sbjct: 595 YNSDGSLARYKARLVAKGFHQEFGIDY 621
Score = 34.7 bits (78), Expect(2) = 6e-09
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 523 VDILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
+D+ N FL G+LEETV+++QP F +P H
Sbjct: 651 LDVSNAFLHGHLEETVYMKQPQGFVDSNYPDH 682
>ref|XP_020424502.1| uncharacterized protein LOC109950345 [Prunus persica]
Length = 201
Score = 63.5 bits (153), Expect = 7e-09
Identities = 43/112 (38%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Frame = +2
Query: 176 TRSFPDIYNNTLPHQAR-KHGLSQALLASLSPIKPTCFSLVFKDLGSRAAMAIEFDALFV 352
TRS ++ +P K+ ++ALLA+++ +PTCFS K RAAM E +A+
Sbjct: 42 TRSRTGTFHPKIPTDGTVKYPFARALLAAVTDQEPTCFSQAQKHAEWRAAMTEEINAILK 101
Query: 353 I-IHGLLP**PSTNFIGY**VFHLKYKANGTI*RYQACLIAKAFSQQ*SINF 505
L+P PS N +GY VF +K ++G + RY+A L+AK F QQ SI++
Sbjct: 102 NNTWTLVPSTPSQNTVGYKWVFRIKRTSDGRLERYKARLVAKGFHQQPSIDY 153
>ref|XP_019239816.1| PREDICTED: uncharacterized protein LOC109219799 [Nicotiana
attenuata]
Length = 1152
Score = 53.5 bits (127), Expect(2) = 1e-08
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 4/91 (4%)
Frame = +2
Query: 245 ALLA-SLS--PIKPTCFSLVFKDLGSRAAMAIEFDALFVI-IHGLLP**PSTNFIGY**V 412
ALLA SLS P++P+C+S KD R M EF+AL L+P P+ N +G V
Sbjct: 632 ALLAQSLSELPVEPSCYSSAVKDSRWRTTMDDEFNALLANHTWSLIPRPPNINVVGCKWV 691
Query: 413 FHLKYKANGTI*RYQACLIAKAFSQQ*SINF 505
+ +K K++G++ R + CL+AK ++Q +++
Sbjct: 692 YRVKQKSDGSLDRCKVCLVAKGYTQSYGVDY 722
Score = 33.5 bits (75), Expect(2) = 1e-08
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 526 DILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
D+ N FL+ L +TV++EQP FQ +P+H
Sbjct: 753 DVKNAFLNSLLTDTVYMEQPHGFQDSHYPHH 783
>gb|KYP71076.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 337
Score = 50.1 bits (118), Expect(2) = 1e-08
Identities = 30/81 (37%), Positives = 47/81 (58%)
Frame = +2
Query: 263 SPIKPTCFSLVFKDLGSRAAMAIEFDALFVIIHGLLP**PSTNFIGY**VFHLKYKANGT 442
+P++PTCFS K +AAM+ EF+AL L S + IG V+ LK +G+
Sbjct: 184 TPVEPTCFSQAIKHPEWKAAMSEEFNALIANCTWTLVPHQSHHIIGNKWVYRLKRNIDGS 243
Query: 443 I*RYQACLIAKAFSQQ*SINF 505
I RY+A L+AK + Q+ +++
Sbjct: 244 IARYKARLVAKRYHQRPGVDY 264
Score = 37.0 bits (84), Expect(2) = 1e-08
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 511 TFSHVDILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
+ SH+DI N FL G + E +++ QP F + Q+P H
Sbjct: 290 SLSHMDINNAFLHGTIAEDIYMSQPSEFVHPQYPNH 325
>gb|PKU60283.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1314
Score = 52.0 bits (123), Expect(2) = 2e-08
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Frame = +2
Query: 260 LSPIKPTCFSLVFKDLGSRAAMAIEFDALFVI-IHGLLP**PSTNFIGY**VFHLKYKAN 436
+ P PT F+ KD R+AM+ EF AL L+P P N +G +F K++++
Sbjct: 829 IQPTDPTTFAQAIKDEHWRSAMSQEFQALQTQGTWDLVPPMPQQNVLGCKWMFRTKFRSD 888
Query: 437 GTI*RYQACLIAKAFSQQ*SINFMK 511
G+I RY+A L+AK F+Q+ I++ +
Sbjct: 889 GSISRYKARLVAKGFNQEYGIDYQE 913
Score = 34.3 bits (77), Expect(2) = 2e-08
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 502 FHETFSHVDILNVFLSGNLEETVFVEQPL*FQYLQFP 612
F+ + + +DI N FL G L +TVF++QP FQ P
Sbjct: 934 FNWSITQLDISNAFLHGKLHDTVFMQQPPGFQDATHP 970
>gb|PNX71838.1| retrovirus-related Pol polyprotein from transposon TNT 1-94
[Trifolium pratense]
Length = 653
Score = 45.8 bits (107), Expect(2) = 2e-08
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = +2
Query: 269 IKPTCFSLVFKDLGSRAAMAIEFDALFVI-IHGLLP**PSTNFIGY**VFHLKYKANGTI 445
I+P+C S K ++AM+ EF+AL L+P S N IG VF +K +G++
Sbjct: 132 IEPSCPSKAIKIAEWKSAMSDEFNALLSNNTWSLVPPHSSQNVIGCKWVFRIKRNPDGSV 191
Query: 446 *RYQACLIAKAFSQQ*SINF 505
RY+A L+AK F QQ I++
Sbjct: 192 ARYKARLVAKGFHQQPGIDY 211
Score = 40.4 bits (93), Expect(2) = 2e-08
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +1
Query: 511 TFSHVDILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
+ SH+D+ N FL+G + ET+++ QP F + Q+P H
Sbjct: 237 SLSHMDVNNAFLNGTISETIYMSQPYGFVHPQYPNH 272
>ref|XP_020114471.1| uncharacterized protein LOC109728471 isoform X1 [Ananas comosus]
Length = 1551
Score = 55.5 bits (132), Expect(2) = 3e-08
Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Frame = +2
Query: 221 ARKHGLSQALLASLS---PIKPTCFSLVFKDLGSRAAMAIEFDALFV-IIHGLLP**PST 388
A+ S + LAS P +P F F+D RAAMA EFDAL L+P PS
Sbjct: 1058 AKNFAGSTSFLASTHTTLPTEPITFHEAFQDADWRAAMAEEFDALLTNDTWELVPAPPSV 1117
Query: 389 NFIGY**VFHLKYKANGTI*RYQACLIAKAFSQQ*SINF 505
N IG V+ +K KA+G++ R +A L+A+ + QQ I+F
Sbjct: 1118 NLIGCKWVYKVKQKADGSLERLKARLVAQGYKQQQGIDF 1156
Score = 30.4 bits (67), Expect(2) = 3e-08
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 523 VDILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
+D+ N FL G L E V+++QP F + P H
Sbjct: 1186 LDVKNAFLHGTLSEEVYMKQPPGFVHPSLPSH 1217
>ref|XP_020114480.1| uncharacterized protein LOC109728471 isoform X2 [Ananas comosus]
Length = 1526
Score = 55.5 bits (132), Expect(2) = 3e-08
Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Frame = +2
Query: 221 ARKHGLSQALLASLS---PIKPTCFSLVFKDLGSRAAMAIEFDALFV-IIHGLLP**PST 388
A+ S + LAS P +P F F+D RAAMA EFDAL L+P PS
Sbjct: 1033 AKNFAGSTSFLASTHTTLPTEPITFHEAFQDADWRAAMAEEFDALLTNDTWELVPAPPSV 1092
Query: 389 NFIGY**VFHLKYKANGTI*RYQACLIAKAFSQQ*SINF 505
N IG V+ +K KA+G++ R +A L+A+ + QQ I+F
Sbjct: 1093 NLIGCKWVYKVKQKADGSLERLKARLVAQGYKQQQGIDF 1131
Score = 30.4 bits (67), Expect(2) = 3e-08
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 523 VDILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
+D+ N FL G L E V+++QP F + P H
Sbjct: 1161 LDVKNAFLHGTLSEEVYMKQPPGFVHPSLPSH 1192
>ref|XP_020114487.1| uncharacterized protein LOC109728471 isoform X3 [Ananas comosus]
Length = 1483
Score = 55.5 bits (132), Expect(2) = 3e-08
Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Frame = +2
Query: 221 ARKHGLSQALLASLS---PIKPTCFSLVFKDLGSRAAMAIEFDALFV-IIHGLLP**PST 388
A+ S + LAS P +P F F+D RAAMA EFDAL L+P PS
Sbjct: 990 AKNFAGSTSFLASTHTTLPTEPITFHEAFQDADWRAAMAEEFDALLTNDTWELVPAPPSV 1049
Query: 389 NFIGY**VFHLKYKANGTI*RYQACLIAKAFSQQ*SINF 505
N IG V+ +K KA+G++ R +A L+A+ + QQ I+F
Sbjct: 1050 NLIGCKWVYKVKQKADGSLERLKARLVAQGYKQQQGIDF 1088
Score = 30.4 bits (67), Expect(2) = 3e-08
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 523 VDILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
+D+ N FL G L E V+++QP F + P H
Sbjct: 1118 LDVKNAFLHGTLSEEVYMKQPPGFVHPSLPSH 1149
>ref|XP_020114543.1| uncharacterized protein LOC109728471 isoform X12 [Ananas comosus]
Length = 1013
Score = 55.5 bits (132), Expect(2) = 3e-08
Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Frame = +2
Query: 221 ARKHGLSQALLASLS---PIKPTCFSLVFKDLGSRAAMAIEFDALFV-IIHGLLP**PST 388
A+ S + LAS P +P F F+D RAAMA EFDAL L+P PS
Sbjct: 520 AKNFAGSTSFLASTHTTLPTEPITFHEAFQDADWRAAMAEEFDALLTNDTWELVPAPPSV 579
Query: 389 NFIGY**VFHLKYKANGTI*RYQACLIAKAFSQQ*SINF 505
N IG V+ +K KA+G++ R +A L+A+ + QQ I+F
Sbjct: 580 NLIGCKWVYKVKQKADGSLERLKARLVAQGYKQQQGIDF 618
Score = 30.4 bits (67), Expect(2) = 3e-08
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 523 VDILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
+D+ N FL G L E V+++QP F + P H
Sbjct: 648 LDVKNAFLHGTLSEEVYMKQPPGFVHPSLPSH 679
>ref|XP_020114563.1| uncharacterized protein LOC109728471 isoform X15 [Ananas comosus]
Length = 890
Score = 55.5 bits (132), Expect(2) = 3e-08
Identities = 40/99 (40%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Frame = +2
Query: 221 ARKHGLSQALLASLS---PIKPTCFSLVFKDLGSRAAMAIEFDALFV-IIHGLLP**PST 388
A+ S + LAS P +P F F+D RAAMA EFDAL L+P PS
Sbjct: 397 AKNFAGSTSFLASTHTTLPTEPITFHEAFQDADWRAAMAEEFDALLTNDTWELVPAPPSV 456
Query: 389 NFIGY**VFHLKYKANGTI*RYQACLIAKAFSQQ*SINF 505
N IG V+ +K KA+G++ R +A L+A+ + QQ I+F
Sbjct: 457 NLIGCKWVYKVKQKADGSLERLKARLVAQGYKQQQGIDF 495
Score = 30.4 bits (67), Expect(2) = 3e-08
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 523 VDILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
+D+ N FL G L E V+++QP F + P H
Sbjct: 525 LDVKNAFLHGTLSEEVYMKQPPGFVHPSLPSH 556
>ref|XP_019231431.1| PREDICTED: uncharacterized protein LOC109212247 isoform X2
[Nicotiana attenuata]
Length = 552
Score = 52.8 bits (125), Expect(2) = 4e-08
Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 6/121 (4%)
Frame = +2
Query: 161 NTIRHTRSFPDIYNNTLPHQARKHGLSQ-----ALLASLSPIKPTCFSLVFKDLGSRAAM 325
+T T S P ++ H K G+S+ +L + I+P+CFS K + AM
Sbjct: 52 STASPTNSMPPAHSL---HTRSKSGISKPKQIFSLNTIIQEIEPSCFSQAVKSPKWQQAM 108
Query: 326 AIEFDALFVI-IHGLLP**PSTNFIGY**VFHLKYKANGTI*RYQACLIAKAFSQQ*SIN 502
A +F+AL L+P P N +G V+ +KY + G++ RY+A L+A+ F QQ I+
Sbjct: 109 ADKFNALLANNTWVLVPFQPHMNLVGCKWVYRIKYNSAGSVERYKARLVAQGFHQQPGID 168
Query: 503 F 505
+
Sbjct: 169 Y 169
Score = 32.7 bits (73), Expect(2) = 4e-08
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 523 VDILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
+D+ N FL G L E VF++QP F + +P H
Sbjct: 199 LDVKNAFLHGVLNEEVFIKQPPGFTHPDYPRH 230
>ref|XP_016489332.1| PREDICTED: uncharacterized protein LOC107809250 [Nicotiana tabacum]
Length = 1159
Score = 59.7 bits (143), Expect(2) = 5e-08
Identities = 42/94 (44%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Frame = +2
Query: 227 KHGLSQALLASLSPIKPTCFSLVFKDLGSRAAMAIEFDALFVI-IHGLLP**PSTNFIGY 403
K+ L + L SL PI+PTCFS KD R A+ EF+AL L+P N IG
Sbjct: 724 KYALLTSHLESL-PIEPTCFSSAIKDHKWRDAIVEEFNALLKNQTWTLVPYHLHMNVIGN 782
Query: 404 **VFHLKYKANGTI*RYQACLIAKAFSQQ*SINF 505
V+ +K KANG++ RY+A L+AK ++QQ SI+F
Sbjct: 783 KWVYRVKQKANGSLERYKARLVAKGYNQQKSIDF 816
Score = 25.4 bits (54), Expect(2) = 5e-08
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 523 VDILNVFLSGNLEETVFVEQP 585
+D+ N FL G L E V++ QP
Sbjct: 846 LDVKNAFLHGFLNEEVYMSQP 866
>ref|XP_019173195.1| PREDICTED: uncharacterized protein LOC109168598 [Ipomoea nil]
Length = 1144
Score = 50.1 bits (118), Expect(2) = 1e-07
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Frame = +2
Query: 188 PDIYNNTLPHQARKHGLSQALLASLSPIKPTCFSLVFKDLGSRAAMAIEFDALFVI-IHG 364
P + L + R QAL A ++ +PTC+S RAAM +EF+AL
Sbjct: 607 PRSHTMELRNTTRSARAGQALAAIVTADEPTCYSQAVAFPEWRAAMDLEFNALLQNDTWR 666
Query: 365 LLP**PSTNFIGY**VFHLKYKANGTI*RYQACLIAKAFSQ 487
L+P P N +G VF +K A+G++ R++A L+ K F+Q
Sbjct: 667 LVPCRPGQNIVGCKWVFRVKRMADGSVERHKARLVVKGFNQ 707
Score = 33.9 bits (76), Expect(2) = 1e-07
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +1
Query: 511 TFSHVDILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
T +D+ N FL+G+L +TV++ QP + QFP H
Sbjct: 739 TIRQLDVHNAFLNGHLAKTVYMRQPPGYVDEQFPTH 774
>gb|OMO89784.1| Integrase, catalytic core [Corchorus capsularis]
Length = 1048
Score = 54.3 bits (129), Expect(2) = 1e-07
Identities = 41/98 (41%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Frame = +2
Query: 227 KHGLSQALLASL--SPIKPTCFSLVFKDLGSRAAMAIEFDALFVI-IHGLLP**PST--N 391
KH L ++L S +PTCFS KD R AM EF+AL L+P PST N
Sbjct: 795 KHPLPACYSSTLEHSSSEPTCFSQASKDPRWRQAMQDEFNALLRNNTWVLVP--PSTPQN 852
Query: 392 FIGY**VFHLKYKANGTI*RYQACLIAKAFSQQ*SINF 505
+G V+ +KYK++G+I RY+A L+AK F QQ +++
Sbjct: 853 IVGSKWVYRIKYKSDGSIERYKARLVAKGFHQQLGLDY 890
Score = 29.6 bits (65), Expect(2) = 1e-07
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 523 VDILNVFLSGNLEETVFVEQP 585
+D+ N FL GNL E V+++QP
Sbjct: 920 LDVKNAFLHGNLNEDVYMQQP 940
>gb|PKU80351.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 541
Score = 52.8 bits (125), Expect(2) = 1e-07
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +2
Query: 248 LLASLSPIKPTCFSLVFKDLGSRAAMAIEFDALFVI-IHGLLP**PSTNFIGY**VFHLK 424
L S+ P+ P+C+S K R AM++EF+AL L+P P N +G +F K
Sbjct: 18 LQTSIVPVTPSCYSEAVKHAVWRKAMSLEFEALQQQGTWVLVPSSPGLNVLGNKWIFRTK 77
Query: 425 YKANGTI*RYQACLIAKAFSQQ*SINF 505
Y ++G++ +Y+A L+AK F Q+ I++
Sbjct: 78 YNSDGSLAQYKARLVAKGFHQEFGIDY 104
Score = 31.2 bits (69), Expect(2) = 1e-07
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +1
Query: 523 VDILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
+D+ FL G+LEETV+++QP F +P H
Sbjct: 134 LDVSIAFLHGHLEETVYMKQPQGFVDSNYPDH 165
>gb|PKU68279.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 535
Score = 54.7 bits (130), Expect(2) = 1e-07
Identities = 34/83 (40%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 LSPIKPTCFSLVFKDLGSRAAMAIEFDALFVI-IHGLLP**PSTNFIGY**VFHLKYKAN 436
L P +PT +S K RAAM++EF AL L+P PS N +G F +KY +N
Sbjct: 22 LHPTEPTTYSQAAKSPEWRAAMSLEFQALQQQGTWELVPPDPSQNVLGSKWTFRIKYNSN 81
Query: 437 GTI*RYQACLIAKAFSQQ*SINF 505
G+I R++A L+AK F+Q+ I++
Sbjct: 82 GSIARHKARLVAKGFNQEHGIDY 104
Score = 29.3 bits (64), Expect(2) = 1e-07
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 511 TFSHVDILNVFLSGNLEETVFVEQP 585
T +D+ N FL G L +TV++ QP
Sbjct: 130 TIHQLDVSNAFLHGTLSDTVYMHQP 154
>gb|PKU70208.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Dendrobium catenatum]
Length = 1221
Score = 48.9 bits (115), Expect(2) = 1e-07
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +2
Query: 275 PTCFSLVFKDLGSRAAMAIEFDALFVI-IHGLLP**PSTNFIGY**VFHLKYKANGTI*R 451
PTCFS K R+AM+ EF AL L+P + N +G F K K++GT+ R
Sbjct: 715 PTCFSQAIKSAHWRSAMSEEFTALQKQGTWSLVPPPTNRNILGSRWTFRTKLKSDGTLDR 774
Query: 452 YQACLIAKAFSQQ*SINF 505
Y+A L+A+ F+QQ I++
Sbjct: 775 YKARLVAQGFNQQFGIDY 792
Score = 34.7 bits (78), Expect(2) = 1e-07
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 526 DILNVFLSGNLEETVFVEQPL*FQYLQFPYH 618
D+ N FL G L E V+++QP F QFP+H
Sbjct: 823 DVSNAFLHGTLHEEVYMKQPQGFVDKQFPHH 853