BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00049490
         (2402 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discolor...   500   0.0  
gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]                   504   0.0  
gb|ANK58539.1| polyprotein [Fig badnavirus 1]                         507   0.0  
gb|ANK58542.1| polyprotein [Fig badnavirus 1]                         506   0.0  
gb|ANK58536.1| polyprotein [Fig badnavirus 1]                         507   0.0  
gb|ANK58548.1| polyprotein [Fig badnavirus 1]                         504   0.0  
gb|ANK58545.1| polyprotein [Fig badnavirus 1]                         505   0.0  
gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration...   501   0.0  
ref|YP_006273075.1| polyprotein [Fig badnavirus 1] >gi|333493962...   498   0.0  
gb|AKA45798.1| polyprotein [Taro bacilliform CH virus]                444   0.0  
gb|ASG91848.1| polyprotein [Cacao swollen shoot virus]                401   e-175
gb|ATZ69449.1| ORF3 polyprotein [Cacao swollen shoot virus]           400   e-172
emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]               397   e-172
ref|NP_041734.1| polyprotein [Cacao swollen shoot virus] >gi|347...   398   e-172
gb|ATZ69482.1| ORF3 polyprotein [Cacao swollen shoot Ghana M virus]   392   e-172
gb|ACH86211.1| unknown [Citrus yellow mosaic virus]                   443   e-171
gb|ASG91896.1| polyprotein [Cacao swollen shoot virus]                391   e-171
ref|NP_569153.1| unknown [Citrus yellow mosaic virus] >gi|164169...   444   e-171
gb|ASG91874.1| polyprotein [Cacao swollen shoot virus]                392   e-170
gb|AIK01820.1| ORF3 [Piper yellow mottle virus]                       422   e-170

>ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
 emb|CDN68224.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1830

 Score =  500 bits (1287), Expect(3) = 0.0
 Identities = 256/471 (54%), Positives = 339/471 (71%), Gaps = 19/471 (4%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            + +++EY+RL AK+GR+F+G EL EK W+KMPGD+G+R+KE F++KYPGV+ GVVPR+LF
Sbjct: 662  IPFLNEYLRLAAKSGRIFLGGELSEKIWMKMPGDLGKRIKEEFDRKYPGVISGVVPRVLF 721

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYK-TEKKYSIRRSQTCKGKPHDTHMRIE 1401
            AYK+LE+ECKE A+KRSLK+LSFCS IPIPGYYK T KKY +RRS+T KGKPH++H RIE
Sbjct: 722  AYKFLENECKEAAFKRSLKNLSFCSSIPIPGYYKNTGKKYGVRRSKTYKGKPHESHARIE 781

Query: 1402 KRKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQS 1581
            KRKHL+RNK+CKC+LCGQEG+FARECPN++++ KR+A++E LE+PDD +I+S+ +GE+ S
Sbjct: 782  KRKHLVRNKRCKCFLCGQEGHFARECPNDRKSSKRMAMFENLELPDDCDIVSVQEGEELS 841

Query: 1582 DAIFSVSEGE--DKEISRTLKVCIQEEYIYMLGEIDGGYRPQIRLPENQLNCFHTWQLNS 1755
            DAI+S+SEGE  D+E+ R+L+     E + MLGE+DGGYRPQI+LP+ Q NC H W  N 
Sbjct: 842  DAIYSISEGEDNDEELQRSLQTM---EIVLMLGEVDGGYRPQIKLPDEQFNCAHNWVHNG 898

Query: 1756 FVQPQQE-TCICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP*NL 1932
             +  Q+   C  C+R++L RARI CP C +TACNLCGPY  K EVPV P       P  +
Sbjct: 899  EILVQKAIKCSFCRRESLKRARIHCPLCLLTACNLCGPYYLKIEVPVDPAPSTPLNPRRI 958

Query: 1933 IHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQ-TLKRDFEELKAFKGKEVCGEPDP 2109
            I EQ+ YI WCE +I+RL KEV+H  K L EA L + +LK+D+E+L+         E D 
Sbjct: 959  IQEQHNYIGWCEAEIERLNKEVKHY-KGLYEALLTEKSLKKDYEDLR---------EGDI 1008

Query: 2110 QEG---MSREHTNILFHQSILKVSQEGI-SGPRLVRNMLYNMKIEPEISGIPRFPVRAIL 2277
            + G   M +E  +I +     KV   G     RLV+NMLYN  IE EI  +P+F VRAIL
Sbjct: 1009 KRGKGVMIQEPEDINYLGENEKVLIAGAEERKRLVKNMLYNFDIEFEIPDVPKFKVRAIL 1068

Query: 2278 DTGVTTCCIDERAVPSEALEKNGTLVQFSGI----------KNGKMHIGEN 2400
            DTG +TCC++E AVP EA+E +   VQ +G+          K G+M IG N
Sbjct: 1069 DTGASTCCVNEGAVPKEAIEDSPYEVQLNGVNSVQKTKKKLKYGRMMIGMN 1119



 Score =  162 bits (411), Expect(3) = 0.0
 Identities = 116/313 (37%), Positives = 155/313 (49%), Gaps = 61/313 (19%)
 Frame = +2

Query: 2    DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLNTVRLPTEVQSQNLLNGNIHISFERYV 181
            DYLA+RGV+ALPGRR++   ++GRNWI+R P+L    +P  VQ+ NLL+G+I   F  Y 
Sbjct: 258  DYLASRGVQALPGRRYNSDMLRGRNWIIRQPQLQVTMMPRSVQTTNLLDGSISARFANYT 317

Query: 182  AAAEPARASTS*VPSNREEGTPEEGM----HYLAAFIEDEPIYDISE------------E 313
             A EP +   +    + EE + E  +    H++ A        ++ E            +
Sbjct: 318  QAPEPQQPRYN--GHDEEEASDEAELAATQHHVVAMFRLSGYTEVEEFKPKFKEQYERYQ 375

Query: 314  DEEALFPAYDSEGELNY-------------------------------PQR---REEEFC 391
             E+         G+ +Y                               PQ    R EEF 
Sbjct: 376  REQQWDTLGQPSGKYDYYVQYTAPPAATIPLTEIQPSGWDDQPQWDDEPQATTIRFEEFS 435

Query: 392  NPFAQKEAVIQEDILAVGYEAEIDDLEYPILKKLKEHVYSGTLTSATSPYRPPEDASMGP 571
            +    + A  QE   AV  EAE++ L YP   K  E + S   +  T PYRPP+DA+MG 
Sbjct: 436  SEAELELAYQQEVFAAVEEEAELE-LAYPQRFKAIEKLLS--TSEVTGPYRPPDDAAMGR 492

Query: 572  PSYPAFRL--DETRPHGNI---------RFRGGINNEMWSLPSA*QNNGAMFVIPEQLGL 718
            PSYP  R   +E     N          RFRGG N+EMW+LPSA Q NGAMFV+PEQLGL
Sbjct: 493  PSYPPARSISEEGVSSSNYPSKFNAARTRFRGGYNDEMWTLPSAQQKNGAMFVLPEQLGL 552

Query: 719  FDDAFSGWESITK 757
            F+DAFS WES+TK
Sbjct: 553  FNDAFSRWESVTK 565



 Score =  144 bits (363), Expect(3) = 0.0
 Identities = 69/97 (71%), Positives = 81/97 (83%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN +A Q FTDV+DKME +ENLLGE EKL W QWRM Y  E+++++A   GR+GTQNILS
Sbjct: 565  KNHVATQSFTDVRDKMEYMENLLGEIEKLIWIQWRMTYVAEYESLIAIGDGRDGTQNILS 624

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDI 1046
            QMRRVFSLEDPAQGST IQD AYR+LERLSC++VK I
Sbjct: 625  QMRRVFSLEDPAQGSTVIQDEAYRELERLSCTDVKYI 661


>gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]
          Length = 1846

 Score =  504 bits (1299), Expect(3) = 0.0
 Identities = 248/474 (52%), Positives = 344/474 (72%), Gaps = 22/474 (4%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            ++Y+++Y+RL AK+GR ++G EL EK WLKMPGD+G RMK +F ++YPG+ +GV PRILF
Sbjct: 665  VQYLNQYLRLAAKSGRAYVGMELSEKLWLKMPGDLGNRMKTAFEERYPGLTVGVAPRILF 724

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYKTEKKYSIRRSQTCKGKPHDTHMRIEK 1404
            AYK+LE ECKE A+KRSLK+LSFC  IPIPGYYK +K+  IR+SQ  KGKPH++H RIEK
Sbjct: 725  AYKFLEAECKEAAFKRSLKNLSFCKDIPIPGYYKDQKRLGIRKSQRYKGKPHESHARIEK 784

Query: 1405 RKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQSD 1584
            RKHL+RNK+CKCYLCG+EG+FARECPN++++ KRVA++EQLE+P+D++I+S+++GED SD
Sbjct: 785  RKHLIRNKRCKCYLCGEEGHFARECPNDRKSAKRVAMFEQLELPEDYDIVSVNEGEDNSD 844

Query: 1585 AIFSVSEGED--KEISRTLKVCIQEEYIYMLGEIDGGYRPQIRLPENQLNCFHTWQLNSF 1758
            AI+S+SEGED  +++ ++LK  +  E ++MLGE DGG+RP+I++ + QL C H W+ N  
Sbjct: 845  AIYSLSEGEDGMEDLGQSLKSLMITEKMFMLGEEDGGWRPKIKVSDEQLACQHKWEHNGE 904

Query: 1759 VQP-QQETCICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP*NLI 1935
            +Q      C+ C+  T+ RARI CPKC+ TACNLCGPY FK+EVPVAP  P    P  LI
Sbjct: 905  IQQFVYLKCLGCQCPTMKRARIHCPKCKATACNLCGPYYFKKEVPVAPPPPTPMNPRKLI 964

Query: 1936 HEQNYYILWCEGKIDRLKKEVEHLRK----ELQEAKLMQTLKRDFEEL----KAFKGKEV 2091
             EQ  +I WCE +I+RL+KEV + +K     L+   +++ L++D++EL    +  + +  
Sbjct: 965  MEQQNHIQWCEVEIERLEKEVSYWKKLYENALRATGVIEDLQKDYKELLSEDEEKRKRRA 1024

Query: 2092 CGEPDPQEGMSREHTNILFHQSILKVS-QEGISGPRLVRNMLYNMKIEPEISGIPRFPVR 2268
             G    +EG   E  N L  + + KV+ QE     ++VRNMLYN  I  +I GI +F V+
Sbjct: 1025 KGVMIIEEG---EQANFLQEEKVNKVAVQEEQRPKKMVRNMLYNFIISIDIPGIDKFSVK 1081

Query: 2269 AILDTGVTTCCIDERAVPSEALEKNGTLVQFSGI----------KNGKMHIGEN 2400
            AILDTG TTCCID+ ++P EALE+N  LV+FSG+          K G+M IGEN
Sbjct: 1082 AILDTGATTCCIDQESIPKEALEENTYLVRFSGVNSTMTANKKLKGGRMFIGEN 1135



 Score =  152 bits (385), Expect(3) = 0.0
 Identities = 107/319 (33%), Positives = 149/319 (46%), Gaps = 67/319 (21%)
 Frame = +2

Query: 2    DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLNTVRLPTEVQSQNLLNGNIHISFERYV 181
            D+L +RGVRALPGRR+   ++QG+NWI+R P++N    P+EV ++NL +G++ I F  Y 
Sbjct: 253  DHLESRGVRALPGRRYSAEQIQGQNWIIRQPQINIPMRPSEVDTRNLYDGSVSIRFRDYA 312

Query: 182  AAAEPARASTS*VPSNREEGTPE--EGMHYLAAFIEDE---------------------- 289
               E A  + +       E   E  +  H +A   E++                      
Sbjct: 313  PTDEQATPAYNKHDEEINEDEEELIQEHHVIAVLTEEDRWDTLGQPSGKYDFYVRYSAPE 372

Query: 290  ----PIYDISEEDEEALFPA-----YDSEGEL-----------------NYPQRREEEFC 391
                PI  I     E +  A     YD +  +                 +      ++F 
Sbjct: 373  SSQIPISSIQSTGWEDMDDAVEEDDYDPDARMALLNLMGRAPVHQIPIYDESDAEMDDFI 432

Query: 392  NPFAQ------KEAVIQEDILAVGYEAEIDDLEYPILKKLKEHVYSGTLTSATSPYRPPE 553
            NPFA+        +   E +     E     L+YP++KKL E VYS   +  TS Y PP 
Sbjct: 433  NPFAEGGGERDTGSENSEKLFVFQEEVAEPTLDYPVMKKL-EKVYS--TSEVTSRYTPPT 489

Query: 554  DASMGPPSYPAFR---------LDETRPHGN--IRFRGGINNEMWSLPSA*QNNGAMFVI 700
            DA MGPPSYP  R            + P+ N  + F+ G N+E+WSLP A Q  GAMFVI
Sbjct: 490  DAVMGPPSYPPARNINGAGTSYAAASPPNFNRRVNFKAGYNDELWSLPPAQQKGGAMFVI 549

Query: 701  PEQLGLFDDAFSGWESITK 757
            PEQ+G+F D FS WESITK
Sbjct: 550  PEQIGMFHDVFSRWESITK 568



 Score =  148 bits (373), Expect(3) = 0.0
 Identities = 69/104 (66%), Positives = 83/104 (79%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN +++QGFTDV+DK+E +ENLLGE EKL W QWRMQY  E++ ++    GREGTQNI+S
Sbjct: 568  KNHVSSQGFTDVRDKLEYMENLLGEVEKLLWIQWRMQYNAEYEELVRTGEGREGTQNIIS 627

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDIKIYARIY 1067
            QMRRVFSLEDPAQGST IQ+ AYRDLE+LSC N+K I  Y   Y
Sbjct: 628  QMRRVFSLEDPAQGSTVIQEEAYRDLEKLSCDNIKYIVQYLNQY 671


>gb|ANK58539.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  507 bits (1306), Expect(3) = 0.0
 Identities = 262/471 (55%), Positives = 338/471 (71%), Gaps = 19/471 (4%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            + +++EYMRL AKTGRLF+G EL EK W+KMPGD+G+R+KE F+ KYPGVV GVVPR+LF
Sbjct: 683  IPFLNEYMRLAAKTGRLFLGGELSEKIWMKMPGDLGKRIKEDFDNKYPGVVSGVVPRVLF 742

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYK-TEKKYSIRRSQTCKGKPHDTHMRIE 1401
            AYK+LE EC++ A+KRSLK+LSFCS IPIPGYYK T KKY +RRS+T KGKPH++H RIE
Sbjct: 743  AYKFLEKECRDAAFKRSLKNLSFCSSIPIPGYYKNTGKKYGVRRSKTYKGKPHESHARIE 802

Query: 1402 KRKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQS 1581
            KRKHL+RNK+CKC+LCGQEG+FARECPN+KR+ KR+A++E LE+P+D +I+S+ +GED S
Sbjct: 803  KRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMS 862

Query: 1582 DAIFSVSEGED--KEISRTLKVCIQEEYIYMLGEIDGGYRPQIRLPENQLNCFHTWQLNS 1755
            DAI+S+SEGED   E+ R+L+     E + MLGEIDGGYRPQI+LPE Q+NC H W  N 
Sbjct: 863  DAIYSISEGEDGADELQRSLQTL---EIVLMLGEIDGGYRPQIKLPEEQMNCVHNWIHNG 919

Query: 1756 FVQPQQET-CICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP*NL 1932
             +  Q+   C  C+R+++ RARI CP C +TACNLCGPY  K EVPV P       P  +
Sbjct: 920  DIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAPSTPINPRRI 979

Query: 1933 IHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQ-TLKRDFEELKAFKGKEVCGEPDP 2109
            I EQ+ YI WCE +I+RL KEV+H  K L EA LM+ +L++D+EELK        G+ + 
Sbjct: 980  IQEQHNYIGWCEVEIERLNKEVKHY-KGLYEALLMEKSLRKDYEELKE-------GDKER 1031

Query: 2110 QEGM---SREHTNILFH-QSILKVSQEGISGPRLVRNMLYNMKIEPEISGIPRFPVRAIL 2277
            ++G+     E  N L   + IL    E     + V+NMLYN  IE EI  + RF VRAIL
Sbjct: 1032 RKGILIQEPEEVNYLGEDEKILAAGTE--EKKKFVKNMLYNFDIESEIPDVSRFRVRAIL 1089

Query: 2278 DTGVTTCCIDERAVPSEALEKNGTLVQFSGI----------KNGKMHIGEN 2400
            DTG +TCCI+E AVP EALE++   VQ +G+          K G+M IG N
Sbjct: 1090 DTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMN 1140



 Score =  144 bits (364), Expect(3) = 0.0
 Identities = 68/97 (70%), Positives = 81/97 (83%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN +A QGFTD +DK+E +ENLLGE EKL W QWRM Y  E++A++A   GR+GTQNILS
Sbjct: 586  KNHVATQGFTDTRDKIEYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGTQNILS 645

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDI 1046
            QMRRVFSLEDPAQGST IQD AYR+LER+SC++VK I
Sbjct: 646  QMRRVFSLEDPAQGSTVIQDEAYRELERMSCTDVKYI 682



 Score =  122 bits (307), Expect(3) = 0.0
 Identities = 77/165 (46%), Positives = 98/165 (59%), Gaps = 14/165 (8%)
 Frame = +2

Query: 305 SEEDEEALFPAYDSEGELNYPQRREEEFCNPFAQKEAVIQEDILAVGYEAEIDDLEYPIL 484
           S+ DEE   P  D+E E +YP +R   + NPF++     ++D L        ++++YP  
Sbjct: 438 SQSDEEHYHP--DAEAEFDYPLKRIH-YLNPFSEGGG--KDDHL------NSEEMDYPQR 486

Query: 485 KKLKEHVYSGTLTSATSPYRPPEDASMGPPSYPAFRLDETRPHGNI-------------- 622
            K  E + S   +  TSPYRPPEDA+MG PSYP  R   T P G                
Sbjct: 487 MKKIEKLLS--TSEVTSPYRPPEDAAMGRPSYPPAR---TIPGGGASSSAEPPRFDAART 541

Query: 623 RFRGGINNEMWSLPSA*QNNGAMFVIPEQLGLFDDAFSGWESITK 757
           RF+GG N+EMW+LPSA Q NGAMFVIPEQLGLF+DAFS WES+TK
Sbjct: 542 RFKGGYNDEMWTLPSAQQKNGAMFVIPEQLGLFNDAFSRWESVTK 586



 Score = 75.1 bits (183), Expect = 6e-10
 Identities = 63/219 (28%), Positives = 93/219 (42%), Gaps = 16/219 (7%)
 Frame = +2

Query: 2   DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLNTVRLPTEVQSQNLLNGNIHISFERYV 181
           DYLA+RGV+ALPGRR+    ++GRNWI+R P++    +P  V+++NL++G I   F  Y 
Sbjct: 255 DYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARFADYT 314

Query: 182 AAAEPAR----ASTS*VPSNREEGTPEEGMHYLAAFIEDEPIYDISE--------EDEEA 325
            A EP +         V S+ EE    E   ++ A +      +I E         D+  
Sbjct: 315 QAPEPRQPHYNEQDEEVASDEEE--LAETQQHIVAMLRFPDYVEIQEFKPKYKEQYDKYK 372

Query: 326 LFPAYDSEGELNYPQRREEEFCNPFAQKEAVIQEDILAVGYEAEIDDLEYPILKKLK--- 496
               +D+ GE   P  + + +    A       EDI   G+E E    + P  K L    
Sbjct: 373 REQGWDTLGE---PSGKYDYYVRYTAPPATTPIEDIQPTGWEEEPKCDDSPDEKSLATIR 429

Query: 497 -EHVYSGTLTSATSPYRPPEDASMGPPSYPAFRLDETRP 610
            E        S    Y P  +A      YP  R+    P
Sbjct: 430 FEEYKEEESQSDEEHYHPDAEAEF---DYPLKRIHYLNP 465


>gb|ANK58542.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  506 bits (1303), Expect(3) = 0.0
 Identities = 262/471 (55%), Positives = 338/471 (71%), Gaps = 19/471 (4%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            + +++EYMRL AKTGRLF+G EL EK W+KMPGD+G+R+KE F+ KYPGVV GVVPR+LF
Sbjct: 683  IPFLNEYMRLAAKTGRLFLGGELSEKIWMKMPGDLGKRIKEDFDNKYPGVVSGVVPRVLF 742

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYK-TEKKYSIRRSQTCKGKPHDTHMRIE 1401
            AYK+LE EC++ A+KRSLK+LSFCS IPIPGYYK T KKY +RRS+T KGKPH++H RIE
Sbjct: 743  AYKFLEKECRDAAFKRSLKNLSFCSSIPIPGYYKNTGKKYGVRRSKTYKGKPHESHARIE 802

Query: 1402 KRKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQS 1581
            KRKHL+RNK+CKC+LCGQEG+FARECPN+KR+ KR+A++E LE+P+D +I+S+ +GED S
Sbjct: 803  KRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMS 862

Query: 1582 DAIFSVSEGED--KEISRTLKVCIQEEYIYMLGEIDGGYRPQIRLPENQLNCFHTWQLNS 1755
            DAI+S+SEGED   E+ R+L+     E + MLGEIDGGYRPQI+LPE Q+NC H W  N 
Sbjct: 863  DAIYSISEGEDGADELQRSLQTL---EIVLMLGEIDGGYRPQIKLPEEQMNCVHNWIHNG 919

Query: 1756 FVQPQQET-CICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP*NL 1932
             +  Q+   C  C+R+++ RARI CP C +TACNLCGPY  K EVPV P       P  +
Sbjct: 920  DIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAPSTPINPRRI 979

Query: 1933 IHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQ-TLKRDFEELKAFKGKEVCGEPDP 2109
            I EQ+ YI WCE +I+RL KEV+H  K L EA LM+ +L++D+EELK        G+ + 
Sbjct: 980  IQEQHNYIGWCEVEIERLNKEVKHY-KGLYEALLMEKSLRKDYEELKE-------GDKER 1031

Query: 2110 QEGM---SREHTNILFH-QSILKVSQEGISGPRLVRNMLYNMKIEPEISGIPRFPVRAIL 2277
            ++G+     E  N L   + IL    E     + V+NMLYN  IE EI  + RF VRAIL
Sbjct: 1032 RKGIMIQEPEEVNYLGEDEKILAAGTE--EKKKFVKNMLYNFDIEFEIPDVSRFRVRAIL 1089

Query: 2278 DTGVTTCCIDERAVPSEALEKNGTLVQFSGI----------KNGKMHIGEN 2400
            DTG +TCCI+E AVP EALE++   VQ +G+          K G+M IG N
Sbjct: 1090 DTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMN 1140



 Score =  144 bits (364), Expect(3) = 0.0
 Identities = 68/97 (70%), Positives = 81/97 (83%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN +A QGFTD +DK+E +ENLLGE EKL W QWRM Y  E++A++A   GR+GTQNILS
Sbjct: 586  KNHVATQGFTDTRDKIEYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGTQNILS 645

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDI 1046
            QMRRVFSLEDPAQGST IQD AYR+LER+SC++VK I
Sbjct: 646  QMRRVFSLEDPAQGSTVIQDEAYRELERMSCTDVKYI 682



 Score =  122 bits (307), Expect(3) = 0.0
 Identities = 77/165 (46%), Positives = 98/165 (59%), Gaps = 14/165 (8%)
 Frame = +2

Query: 305 SEEDEEALFPAYDSEGELNYPQRREEEFCNPFAQKEAVIQEDILAVGYEAEIDDLEYPIL 484
           S+ DEE   P  D+E E +YP +R   + NPF++     ++D L        ++++YP  
Sbjct: 438 SQSDEEHYHP--DAEAEFDYPLKRIH-YLNPFSEGGG--KDDHL------NSEEMDYPQR 486

Query: 485 KKLKEHVYSGTLTSATSPYRPPEDASMGPPSYPAFRLDETRPHGNI-------------- 622
            K  E + S   +  TSPYRPPEDA+MG PSYP  R   T P G                
Sbjct: 487 MKKIEKLLS--TSEVTSPYRPPEDAAMGRPSYPPAR---TIPGGGASSSAEPPRFDAART 541

Query: 623 RFRGGINNEMWSLPSA*QNNGAMFVIPEQLGLFDDAFSGWESITK 757
           RF+GG N+EMW+LPSA Q NGAMFVIPEQLGLF+DAFS WES+TK
Sbjct: 542 RFKGGYNDEMWTLPSAQQKNGAMFVIPEQLGLFNDAFSRWESVTK 586



 Score = 74.7 bits (182), Expect = 8e-10
 Identities = 63/219 (28%), Positives = 93/219 (42%), Gaps = 16/219 (7%)
 Frame = +2

Query: 2   DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLNTVRLPTEVQSQNLLNGNIHISFERYV 181
           DYLA+RGV+ALPGRR+    ++GRNWI+R P++    +P  V+++NL++G I   F  Y 
Sbjct: 255 DYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARFADYT 314

Query: 182 AAAEPAR----ASTS*VPSNREEGTPEEGMHYLAAFIEDEPIYDISE--------EDEEA 325
            A EP +         V S+ EE    E   ++ A +      +I E         D+  
Sbjct: 315 QAPEPRQPHYNEQDEEVASDEEE--LAETQQHIVAMLRFPDYVEIQEFKPKYKEQYDKYK 372

Query: 326 LFPAYDSEGELNYPQRREEEFCNPFAQKEAVIQEDILAVGYEAEIDDLEYPILKKLK--- 496
               +D+ GE   P  + + +    A       EDI   G+E E    + P  K L    
Sbjct: 373 REQGWDTLGE---PSGKYDYYVRYTAPPATTPIEDIQPTGWEEEPKWDDSPDEKSLATIR 429

Query: 497 -EHVYSGTLTSATSPYRPPEDASMGPPSYPAFRLDETRP 610
            E        S    Y P  +A      YP  R+    P
Sbjct: 430 FEEYKEEESQSDEEHYHPDAEAEF---DYPLKRIHYLNP 465


>gb|ANK58536.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  507 bits (1305), Expect(3) = 0.0
 Identities = 262/471 (55%), Positives = 338/471 (71%), Gaps = 19/471 (4%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            + +++EYMRL AKTGRLF+G EL EK W+KMPGD+G+R+KE F+ KYPGVV GVVPR+LF
Sbjct: 683  IPFLNEYMRLAAKTGRLFLGGELSEKIWMKMPGDLGKRIKEDFDNKYPGVVSGVVPRVLF 742

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYK-TEKKYSIRRSQTCKGKPHDTHMRIE 1401
            AYK+LE EC++ A+KRSLK+LSFCS IPIPGYYK T KKY +RRS+T KGKPH++H RIE
Sbjct: 743  AYKFLEKECRDAAFKRSLKNLSFCSSIPIPGYYKNTGKKYGVRRSKTYKGKPHESHARIE 802

Query: 1402 KRKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQS 1581
            KRKHL+RNK+CKC+LCGQEG+FARECPN+KR+ KR+A++E LE+P+D +I+S+ +GED S
Sbjct: 803  KRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMS 862

Query: 1582 DAIFSVSEGED--KEISRTLKVCIQEEYIYMLGEIDGGYRPQIRLPENQLNCFHTWQLNS 1755
            DAI+S+SEGED   E+ R+L+     E + MLGEIDGGYRPQI+LPE Q+NC H W  N 
Sbjct: 863  DAIYSISEGEDGADELQRSLQTL---EIVLMLGEIDGGYRPQIKLPEEQMNCVHNWIHNG 919

Query: 1756 FVQPQQET-CICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP*NL 1932
             +  Q+   C  C+R+++ RARI CP C +TACNLCGPY  K EVPV P       P  +
Sbjct: 920  DIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAPSTPINPRRI 979

Query: 1933 IHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQT-LKRDFEELKAFKGKEVCGEPDP 2109
            I EQ+ YI WCE +I+RL KEV+H  K L EA LM+T L++D+EEL       + G+ + 
Sbjct: 980  IQEQHNYIGWCEVEIERLNKEVKHY-KGLYEALLMETSLRKDYEEL-------IDGDKER 1031

Query: 2110 QEGM---SREHTNILFH-QSILKVSQEGISGPRLVRNMLYNMKIEPEISGIPRFPVRAIL 2277
            ++G+     E  N L   + IL    E     + V+NMLYN  IE EI  + RF VRAIL
Sbjct: 1032 RKGILIQEPEEVNYLGEDEKILAAGTE--EKKKFVKNMLYNSDIESEIPDVSRFRVRAIL 1089

Query: 2278 DTGVTTCCIDERAVPSEALEKNGTLVQFSGI----------KNGKMHIGEN 2400
            DTG +TCCI+E AVP EALE++   VQ +G+          K G+M IG N
Sbjct: 1090 DTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMN 1140



 Score =  143 bits (360), Expect(3) = 0.0
 Identities = 67/97 (69%), Positives = 81/97 (83%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN +A QGFTD +DK++ +ENLLGE EKL W QWRM Y  E++A++A   GR+GTQNILS
Sbjct: 586  KNHVATQGFTDTRDKIKYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGTQNILS 645

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDI 1046
            QMRRVFSLEDPAQGST IQD AYR+LER+SC++VK I
Sbjct: 646  QMRRVFSLEDPAQGSTVIQDEAYRELERMSCTDVKYI 682



 Score =  122 bits (307), Expect(3) = 0.0
 Identities = 77/165 (46%), Positives = 98/165 (59%), Gaps = 14/165 (8%)
 Frame = +2

Query: 305 SEEDEEALFPAYDSEGELNYPQRREEEFCNPFAQKEAVIQEDILAVGYEAEIDDLEYPIL 484
           S+ DEE   P  D+E E +YP +R   + NPF++     ++D L        ++++YP  
Sbjct: 438 SQSDEEHYHP--DAEAEFDYPLKRIH-YLNPFSEGGG--KDDHL------NSEEMDYPQR 486

Query: 485 KKLKEHVYSGTLTSATSPYRPPEDASMGPPSYPAFRLDETRPHGNI-------------- 622
            K  E + S   +  TSPYRPPEDA+MG PSYP  R   T P G                
Sbjct: 487 MKKIEKLLS--TSEVTSPYRPPEDAAMGRPSYPPAR---TIPGGGASSSAEPPRFDAART 541

Query: 623 RFRGGINNEMWSLPSA*QNNGAMFVIPEQLGLFDDAFSGWESITK 757
           RF+GG N+EMW+LPSA Q NGAMFVIPEQLGLF+DAFS WES+TK
Sbjct: 542 RFKGGYNDEMWTLPSAQQKNGAMFVIPEQLGLFNDAFSRWESVTK 586



 Score = 73.2 bits (178), Expect = 2e-09
 Identities = 31/65 (47%), Positives = 45/65 (69%)
 Frame = +2

Query: 2   DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLNTVRLPTEVQSQNLLNGNIHISFERYV 181
           DYLA+RGV+ALPGRR+    ++GRNWI+R P++    +P  V+++NL++G I   F  Y 
Sbjct: 255 DYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARFADYT 314

Query: 182 AAAEP 196
            A EP
Sbjct: 315 QAPEP 319


>gb|ANK58548.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  504 bits (1299), Expect(3) = 0.0
 Identities = 261/471 (55%), Positives = 338/471 (71%), Gaps = 19/471 (4%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            + +++EYMRL AKTGRLF+G EL EK W+KMPGD+G+R+KE F+ KYPGVV GVVPR+LF
Sbjct: 683  IPFLNEYMRLAAKTGRLFLGGELSEKIWMKMPGDLGKRIKEDFDNKYPGVVSGVVPRVLF 742

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYK-TEKKYSIRRSQTCKGKPHDTHMRIE 1401
            AYK+LE EC++ A+KRSLK+LSFCS IPIPGYYK T KKY +RRS+T KGKPH++H RIE
Sbjct: 743  AYKFLEKECRDAAFKRSLKNLSFCSSIPIPGYYKNTGKKYGVRRSKTYKGKPHESHARIE 802

Query: 1402 KRKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQS 1581
            KRKHL+RNK+CKC+LCGQEG+FAR+CPN+KR+ KR+A++E LE+P+D +I+S+ +GED S
Sbjct: 803  KRKHLVRNKRCKCFLCGQEGHFARKCPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMS 862

Query: 1582 DAIFSVSEGED--KEISRTLKVCIQEEYIYMLGEIDGGYRPQIRLPENQLNCFHTWQLNS 1755
            DAI+S+SEGED   E+ R+L+     E + MLGEIDGGYRPQI+LPE Q+NC H W  N 
Sbjct: 863  DAIYSISEGEDGADELQRSLQTL---EIVLMLGEIDGGYRPQIKLPEEQMNCVHNWIHNG 919

Query: 1756 FVQPQQET-CICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP*NL 1932
             +  Q+   C  C+R+++ RARI CP C +TACNLCGPY  K EVPV P       P  +
Sbjct: 920  DIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAPSTPINPRRI 979

Query: 1933 IHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQ-TLKRDFEELKAFKGKEVCGEPDP 2109
            I EQ+ YI WCE +I+RL KEV+H  K L EA LM+ +L++D+EELK        G+ + 
Sbjct: 980  IQEQHNYIGWCEVEIERLNKEVKHY-KGLYEALLMEKSLRKDYEELKE-------GDKER 1031

Query: 2110 QEGM---SREHTNILFH-QSILKVSQEGISGPRLVRNMLYNMKIEPEISGIPRFPVRAIL 2277
            ++G+     E  N L   + IL    E     + V+NMLYN  IE EI  + RF VRAIL
Sbjct: 1032 RKGIMIQEPEEVNYLGEDEKILAAGTE--EKKKFVKNMLYNFDIEFEIPDVSRFRVRAIL 1089

Query: 2278 DTGVTTCCIDERAVPSEALEKNGTLVQFSGI----------KNGKMHIGEN 2400
            DTG +TCCI+E AVP EALE++   VQ +G+          K G+M IG N
Sbjct: 1090 DTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMN 1140



 Score =  144 bits (364), Expect(3) = 0.0
 Identities = 68/97 (70%), Positives = 81/97 (83%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN +A QGFTD +DK+E +ENLLGE EKL W QWRM Y  E++A++A   GR+GTQNILS
Sbjct: 586  KNHVATQGFTDTRDKIEYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGTQNILS 645

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDI 1046
            QMRRVFSLEDPAQGST IQD AYR+LER+SC++VK I
Sbjct: 646  QMRRVFSLEDPAQGSTVIQDEAYRELERMSCTDVKYI 682



 Score =  122 bits (305), Expect(3) = 0.0
 Identities = 77/165 (46%), Positives = 98/165 (59%), Gaps = 14/165 (8%)
 Frame = +2

Query: 305 SEEDEEALFPAYDSEGELNYPQRREEEFCNPFAQKEAVIQEDILAVGYEAEIDDLEYPIL 484
           S+ DEE   P  D+E E +YP +R   + NPF++     ++D L        ++++YP  
Sbjct: 438 SQSDEEHYQP--DAEAEFDYPLKRIH-YLNPFSEGGG--KDDHL------NSEEMDYPQR 486

Query: 485 KKLKEHVYSGTLTSATSPYRPPEDASMGPPSYPAFRLDETRPHGNI-------------- 622
            K  E + S   +  TSPYRPPEDA+MG PSYP  R   T P G                
Sbjct: 487 MKKIEKLLS--TSEVTSPYRPPEDAAMGRPSYPPAR---TIPGGGASSSAEPPRFDAART 541

Query: 623 RFRGGINNEMWSLPSA*QNNGAMFVIPEQLGLFDDAFSGWESITK 757
           RF+GG N+EMW+LPSA Q NGAMFVIPEQLGLF+DAFS WES+TK
Sbjct: 542 RFKGGYNDEMWTLPSAQQKNGAMFVIPEQLGLFNDAFSRWESVTK 586



 Score = 75.1 bits (183), Expect = 6e-10
 Identities = 63/219 (28%), Positives = 94/219 (42%), Gaps = 16/219 (7%)
 Frame = +2

Query: 2   DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLNTVRLPTEVQSQNLLNGNIHISFERYV 181
           DYLA+RGV+ALPGRR+    ++GRNWI+R P++    +P  V+++NL++G I   F  Y 
Sbjct: 255 DYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARFADYT 314

Query: 182 AAAEPAR----ASTS*VPSNREEGTPEEGMHYLAAFIEDEPIYDISE--------EDEEA 325
            A EP +         V S+ EE    E   ++ A +      +I E         D+  
Sbjct: 315 QAPEPRQPHYNEQDEEVASDEEE--LAETQQHIVAMLRFPDYVEIQEFKPKYKEQYDKYK 372

Query: 326 LFPAYDSEGELNYPQRREEEFCNPFAQKEAVIQEDILAVGYEAEIDDLEYPILKKLK--- 496
               +D+ GE   P  + + +    A       EDI   G+E E    + P  K L    
Sbjct: 373 REQGWDTLGE---PSGKYDYYVRYTAPPATTPIEDIQPTGWEEEPKWDDSPDEKSLATIR 429

Query: 497 -EHVYSGTLTSATSPYRPPEDASMGPPSYPAFRLDETRP 610
            E        S    Y+P  +A      YP  R+    P
Sbjct: 430 FEEYKEEESQSDEEHYQPDAEAEF---DYPLKRIHYLNP 465


>gb|ANK58545.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  505 bits (1301), Expect(3) = 0.0
 Identities = 262/471 (55%), Positives = 337/471 (71%), Gaps = 19/471 (4%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            + +++EYMRL AKTGRLF+G EL EK W+KMPGD+G+R+KE F+ KYPGVV GVVPR+LF
Sbjct: 683  IPFLNEYMRLAAKTGRLFLGGELSEKIWMKMPGDLGKRIKEDFDNKYPGVVSGVVPRVLF 742

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYK-TEKKYSIRRSQTCKGKPHDTHMRIE 1401
            AYK+LE EC++ A+KRSLK+LSFCS IPIPGYYK T KKY +RRS+T KGKPH++H RIE
Sbjct: 743  AYKFLEKECRDAAFKRSLKNLSFCSSIPIPGYYKNTGKKYGVRRSKTYKGKPHESHARIE 802

Query: 1402 KRKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQS 1581
            KRKHL+RNK+CKC+LCGQEG+FARECPN+KR+ KR+A++E LE+P+D +I+S+ +GED S
Sbjct: 803  KRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMS 862

Query: 1582 DAIFSVSEGED--KEISRTLKVCIQEEYIYMLGEIDGGYRPQIRLPENQLNCFHTWQLNS 1755
            DAI+S+SEGED   E+ R+L+     E + MLGEIDGGYRPQI+LPE Q+NC H W  N 
Sbjct: 863  DAIYSISEGEDGADELQRSLQTL---EIVLMLGEIDGGYRPQIKLPEEQMNCVHNWIHNG 919

Query: 1756 FVQPQQET-CICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP*NL 1932
             +  Q+   C  C+R+++ RARI CP C +TACNLCGPY  K EVPV P       P  +
Sbjct: 920  DIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAPSTPINPRRI 979

Query: 1933 IHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQT-LKRDFEELKAFKGKEVCGEPDP 2109
            I EQ+ YI WCE +I+RL KEV H  K L EA LM+T L++D+EEL       + G+ + 
Sbjct: 980  IQEQHNYIGWCEVEIERLNKEVMHY-KGLYEALLMETSLRKDYEEL-------IEGDKER 1031

Query: 2110 QEGM---SREHTNILFH-QSILKVSQEGISGPRLVRNMLYNMKIEPEISGIPRFPVRAIL 2277
            ++G+     E  N L   + IL    E     + V+NMLYN  IE EI  + RF VRAIL
Sbjct: 1032 RKGIMIQEPEEVNYLGEDEKILAAGTE--EKKKFVKNMLYNSDIESEIPDVSRFRVRAIL 1089

Query: 2278 DTGVTTCCIDERAVPSEALEKNGTLVQFSGI----------KNGKMHIGEN 2400
            DTG +TCCI+E AVP EALE++   VQ +G+          K G+M IG N
Sbjct: 1090 DTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMN 1140



 Score =  144 bits (364), Expect(3) = 0.0
 Identities = 68/97 (70%), Positives = 81/97 (83%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN +A QGFTD +DK+E +ENLLGE EKL W QWRM Y  E++A++A   GR+GTQNILS
Sbjct: 586  KNHVATQGFTDTRDKIEYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGTQNILS 645

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDI 1046
            QMRRVFSLEDPAQGST IQD AYR+LER+SC++VK I
Sbjct: 646  QMRRVFSLEDPAQGSTVIQDEAYRELERMSCTDVKYI 682



 Score =  119 bits (299), Expect(3) = 0.0
 Identities = 76/165 (46%), Positives = 97/165 (58%), Gaps = 14/165 (8%)
 Frame = +2

Query: 305 SEEDEEALFPAYDSEGELNYPQRREEEFCNPFAQKEAVIQEDILAVGYEAEIDDLEYPIL 484
           S+ DEE   P  D+E E +YP +R   + NPF++     ++D L        ++++YP  
Sbjct: 438 SQSDEEHYHP--DAEAEFDYPLKRIH-YLNPFSEGGG--KDDHL------NSEEMDYPQR 486

Query: 485 KKLKEHVYSGTLTSATSPYRPPEDASMGPPSYPAFRLDETRPHGNI-------------- 622
            K  E + S   +  TSPYRPPEDA+M  PSYP  R   T P G                
Sbjct: 487 MKKIEKLLS--TSEVTSPYRPPEDAAMRRPSYPPAR---TIPGGGASSSAEPPRFDAART 541

Query: 623 RFRGGINNEMWSLPSA*QNNGAMFVIPEQLGLFDDAFSGWESITK 757
           RF+GG N+EMW+LPSA Q NGAMFVIPEQLGLF+DAFS WES+TK
Sbjct: 542 RFKGGYNDEMWTLPSAQQKNGAMFVIPEQLGLFNDAFSRWESVTK 586



 Score = 73.2 bits (178), Expect = 2e-09
 Identities = 31/65 (47%), Positives = 45/65 (69%)
 Frame = +2

Query: 2   DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLNTVRLPTEVQSQNLLNGNIHISFERYV 181
           DYLA+RGV+ALPGRR+    ++GRNWI+R P++    +P  V+++NL++G I   F  Y 
Sbjct: 255 DYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARFADYT 314

Query: 182 AAAEP 196
            A EP
Sbjct: 315 QAPEP 319


>gb|AMN88380.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1789

 Score =  501 bits (1289), Expect(3) = 0.0
 Identities = 257/471 (54%), Positives = 337/471 (71%), Gaps = 19/471 (4%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            + +++EY+RL AK+GR+F+G EL EK W+KMPGD+GRR+KE+F++KYPGV+ GVVPR+LF
Sbjct: 698  IPFLNEYLRLAAKSGRIFLGGELSEKIWMKMPGDLGRRIKENFDRKYPGVISGVVPRVLF 757

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYK-TEKKYSIRRSQTCKGKPHDTHMRIE 1401
            AYK+LE+ECKE A+KRSLK+LSFCS IPIPGYYK T KKY +RRS+T KGKPH++H RIE
Sbjct: 758  AYKFLENECKEAAFKRSLKNLSFCSSIPIPGYYKNTGKKYGVRRSKTYKGKPHESHARIE 817

Query: 1402 KRKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQS 1581
            KRKHL+RNK+CKC+LCGQEG+FARECPN++++ KR+A++E LE+P+D +I+S+ +GE+ S
Sbjct: 818  KRKHLVRNKRCKCFLCGQEGHFARECPNDRKSTKRMAMFENLELPEDCDIVSVQEGEELS 877

Query: 1582 DAIFSVSEGED--KEISRTLKVCIQEEYIYMLGEIDGGYRPQIRLPENQLNCFHTWQLN- 1752
            DAI+S+SEGED  +E+ R+L+     E + MLGE+DGGYRPQI+LP+ Q NC H W  N 
Sbjct: 878  DAIYSISEGEDDVEELQRSLQTL---ELVLMLGEVDGGYRPQIKLPDEQFNCAHNWVHNG 934

Query: 1753 SFVQPQQETCICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP*NL 1932
              + P+   C  CKR +L RARI CP C +TACNLCGPY  K EVPV P       P  +
Sbjct: 935  EILVPKAIKCSFCKRDSLKRARIHCPLCLLTACNLCGPYYLKIEVPVDPAPSTPLNPRRI 994

Query: 1933 IHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQ-TLKRDFEELKAFKGKEVCGEPDP 2109
            I EQ+ YI WCE +I+RL KEV+H  K L EA L +  LK+D+E+LK         E D 
Sbjct: 995  IQEQHNYIGWCEAEIERLNKEVKHY-KGLYEALLTEKALKKDYEDLK---------EGDI 1044

Query: 2110 QEG---MSREHTNILFHQSILKVSQEGI-SGPRLVRNMLYNMKIEPEISGIPRFPVRAIL 2277
            + G   M +E  +I +     K    G     RLV+NMLYN  IE EI  +P+F VRAIL
Sbjct: 1045 KRGKGIMIQETEDINYLGENEKALIAGAEERKRLVKNMLYNFDIEFEIPDVPKFKVRAIL 1104

Query: 2278 DTGVTTCCIDERAVPSEALEKNGTLVQFSGI----------KNGKMHIGEN 2400
            DTG +TCC++E AVP EA+E +   VQ +G+          K G+M IG N
Sbjct: 1105 DTGASTCCVNEGAVPKEAIEDSPYEVQLNGVNSVQKTKKKLKYGRMMIGMN 1155



 Score =  142 bits (359), Expect(3) = 0.0
 Identities = 68/97 (70%), Positives = 81/97 (83%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN +A Q FTDV+DKME +ENLLGE EKL W +WRM Y  E+++++A   GR+GTQNILS
Sbjct: 601  KNHVATQSFTDVRDKMEYMENLLGEIEKLIWIRWRMTYVAEYESLIAIGDGRDGTQNILS 660

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDI 1046
            QMRRVFSLEDPAQGST IQD AYR+LERLSC++VK I
Sbjct: 661  QMRRVFSLEDPAQGSTVIQDEAYRELERLSCTDVKYI 697



 Score =  121 bits (303), Expect(3) = 0.0
 Identities = 75/177 (42%), Positives = 103/177 (58%), Gaps = 24/177 (13%)
 Frame = +2

Query: 299 DISEEDEEALFPAY--DSEGELNYPQRREEEFCNPFAQ-----------KEAVIQEDILA 439
           + + E++ AL+P+Y  D +   +YP +R   + NPF++           ++   QE +LA
Sbjct: 432 EFASEEDNALYPSYTPDVDATFDYPLKRIH-YINPFSEAGGEDERKKGERDEREQEQVLA 490

Query: 440 VGYEAEIDDLEYPILKKLKEHVYSGTLTSATSPYRPPEDASMGPPSYPAFRL--DETRPH 613
               A  ++L YP   K  E + S   +  T PYRPP+DA+MG PSYP  R   +E    
Sbjct: 491 ----AVEEELAYPQRFKAIEKLLS--TSEVTGPYRPPDDAAMGRPSYPPARAISEEGMSS 544

Query: 614 GNI---------RFRGGINNEMWSLPSA*QNNGAMFVIPEQLGLFDDAFSGWESITK 757
            N          RF+GG N+EMW+LPSA Q NGAMFV+PEQLGLF+DAFS WES+TK
Sbjct: 545 SNYPSRFDTARTRFKGGYNDEMWTLPSAQQKNGAMFVLPEQLGLFNDAFSRWESVTK 601



 Score = 76.3 bits (186), Expect = 3e-10
 Identities = 34/65 (52%), Positives = 46/65 (70%)
 Frame = +2

Query: 2   DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLNTVRLPTEVQSQNLLNGNIHISFERYV 181
           DYLA+RGV+ALPGRR++   ++GRNWI+R P+L    +P  VQ+ NLL+G+I   F  Y 
Sbjct: 256 DYLASRGVQALPGRRYNSDILRGRNWIIRQPQLQVTMMPRSVQTTNLLDGSISARFANYT 315

Query: 182 AAAEP 196
            A EP
Sbjct: 316 QAPEP 320


>ref|YP_006273075.1| polyprotein [Fig badnavirus 1]
 gb|AEF56561.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  498 bits (1282), Expect(3) = 0.0
 Identities = 258/471 (54%), Positives = 336/471 (71%), Gaps = 19/471 (4%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            + +++EYMRL AKTGRLF+G EL EK W+KMPGD+ + +KE F+ KYPGVV GVVPR+LF
Sbjct: 683  IPFLNEYMRLAAKTGRLFLGGELSEKIWMKMPGDLRKTIKEDFDNKYPGVVSGVVPRVLF 742

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYK-TEKKYSIRRSQTCKGKPHDTHMRIE 1401
            AYK+LE EC++ A+KRSLK+LSFCS IPIPGYYK T KKY +RRS+T KGKPH++H RIE
Sbjct: 743  AYKFLEKECRDAAFKRSLKNLSFCSSIPIPGYYKNTGKKYGVRRSKTYKGKPHESHARIE 802

Query: 1402 KRKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQS 1581
            KRKHL+RNK+CKC+LCGQEG+FAR+CPN+KR+ KR+A++E LE+P+D +I+S+ +GED S
Sbjct: 803  KRKHLVRNKRCKCFLCGQEGHFARKCPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMS 862

Query: 1582 DAIFSVSEGED--KEISRTLKVCIQEEYIYMLGEIDGGYRPQIRLPENQLNCFHTWQLNS 1755
            DAI+S+SEGED   E+ ++L+     E + MLGEIDGGYRPQI+LPE Q+NC H W  N 
Sbjct: 863  DAIYSISEGEDGADELQKSLQTL---EIVLMLGEIDGGYRPQIKLPEEQMNCVHNWIHNG 919

Query: 1756 FVQPQQET-CICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP*NL 1932
             +  Q+   C  C+R+++ RARI CP C +TACNLCGPY  K EVPV P       P  +
Sbjct: 920  DIFVQRAVHCSFCRRESIKRARIHCPLCLLTACNLCGPYYLKIEVPVEPAPSTPINPRRI 979

Query: 1933 IHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQ-TLKRDFEELKAFKGKEVCGEPDP 2109
            I EQ+ YI WCE +I+RL KEV+H  K L EA LM+ +L++D+EELK        G+ + 
Sbjct: 980  IQEQHNYIGWCEVEIERLNKEVKHY-KGLYEALLMEKSLRKDYEELKE-------GDKER 1031

Query: 2110 QEGM---SREHTNILFH-QSILKVSQEGISGPRLVRNMLYNMKIEPEISGIPRFPVRAIL 2277
            ++G+     E  N L   + IL    E     + V+NMLYN  IE EI  + RF VRAIL
Sbjct: 1032 RKGIMIQEPEEVNYLGEDEKILAAGTE--EKKKFVKNMLYNFDIEFEIPDVSRFRVRAIL 1089

Query: 2278 DTGVTTCCIDERAVPSEALEKNGTLVQFSGI----------KNGKMHIGEN 2400
            DTG +TCCI+E AVP EALE++   VQ +G+          K G+M IG N
Sbjct: 1090 DTGASTCCINEGAVPKEALEESPYEVQLNGVNSVQKTKKKLKYGRMMIGMN 1140



 Score =  143 bits (360), Expect(3) = 0.0
 Identities = 67/97 (69%), Positives = 81/97 (83%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN +A QGFTD +DK++ +ENLLGE EKL W QWRM Y  E++A++A   GR+GTQNILS
Sbjct: 586  KNHVATQGFTDTRDKIKYMENLLGEIEKLIWIQWRMTYATEYEALVAIGEGRDGTQNILS 645

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDI 1046
            QMRRVFSLEDPAQGST IQD AYR+LER+SC++VK I
Sbjct: 646  QMRRVFSLEDPAQGSTVIQDEAYRELERMSCTDVKYI 682



 Score =  122 bits (305), Expect(3) = 0.0
 Identities = 77/165 (46%), Positives = 98/165 (59%), Gaps = 14/165 (8%)
 Frame = +2

Query: 305 SEEDEEALFPAYDSEGELNYPQRREEEFCNPFAQKEAVIQEDILAVGYEAEIDDLEYPIL 484
           S+ DEE   P  D+E E +YP +R   + NPF++     ++D L        ++++YP  
Sbjct: 438 SQSDEEHYQP--DAEAEFDYPLKRIH-YLNPFSEGGG--KDDHL------NSEEMDYPQR 486

Query: 485 KKLKEHVYSGTLTSATSPYRPPEDASMGPPSYPAFRLDETRPHGNI-------------- 622
            K  E + S   +  TSPYRPPEDA+MG PSYP  R   T P G                
Sbjct: 487 MKKIEKLLS--TSEVTSPYRPPEDAAMGRPSYPPAR---TIPGGGASSSAEPPRFDAART 541

Query: 623 RFRGGINNEMWSLPSA*QNNGAMFVIPEQLGLFDDAFSGWESITK 757
           RF+GG N+EMW+LPSA Q NGAMFVIPEQLGLF+DAFS WES+TK
Sbjct: 542 RFKGGYNDEMWTLPSAQQKNGAMFVIPEQLGLFNDAFSRWESVTK 586



 Score = 72.0 bits (175), Expect = 5e-09
 Identities = 62/219 (28%), Positives = 93/219 (42%), Gaps = 16/219 (7%)
 Frame = +2

Query: 2   DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLNTVRLPTEVQSQNLLNGNIHISFERYV 181
           DYLA+RGV+ALPGRR+    ++GRNWI+R P++    +P  V+++NL++G I      Y 
Sbjct: 255 DYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARSADYT 314

Query: 182 AAAEPAR----ASTS*VPSNREEGTPEEGMHYLAAFIEDEPIYDISE--------EDEEA 325
            A EP +         V S+ EE    E   ++ A +      +I E         D+  
Sbjct: 315 QAPEPRQPHYNEQDEEVASDEEE--LAETQQHIVAMLRFPDYVEIQEFKPKYKEQYDKYK 372

Query: 326 LFPAYDSEGELNYPQRREEEFCNPFAQKEAVIQEDILAVGYEAEIDDLEYPILKKLK--- 496
               +D+ GE   P  + + +    A       EDI   G+E E    + P  K L    
Sbjct: 373 REQGWDTLGE---PSGKYDYYVRYTAPPATTPIEDIQPTGWEEEPKWDDSPDEKSLATIR 429

Query: 497 -EHVYSGTLTSATSPYRPPEDASMGPPSYPAFRLDETRP 610
            E        S    Y+P  +A      YP  R+    P
Sbjct: 430 FEEYKEEESQSDEEHYQPDAEAEF---DYPLKRIHYLNP 465


>gb|AKA45798.1| polyprotein [Taro bacilliform CH virus]
          Length = 1803

 Score =  444 bits (1141), Expect(3) = 0.0
 Identities = 225/477 (47%), Positives = 315/477 (66%), Gaps = 27/477 (5%)
 Frame = +1

Query: 1051 YMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILFAY 1230
            YM+EYMRL +K GRLFI  +L EKFW KMP ++G R+KE++  +YPG  IGV PR+LFAY
Sbjct: 697  YMNEYMRLASKQGRLFINEDLLEKFWFKMPDELGPRIKEAYEARYPGNTIGVFPRVLFAY 756

Query: 1231 KYLEDECKEPAYKRSLKDLSFCSQIPIPGYYKTEKKYSIRRSQTCKGKPHDTHMRIEKRK 1410
            K+LE+EC++ AYKRSLK LSF S IPI GYYKTEKKY +RRS+T KGKPH +H RIE+RK
Sbjct: 757  KFLENECRDAAYKRSLKSLSFYSSIPILGYYKTEKKYGVRRSRTYKGKPHASHARIERRK 816

Query: 1411 HLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQSDAI 1590
            HL RNK+CKCYLCGQEG+FARECPN++R+IKRV ++E L++P+D +I+S+ +G+++SDAI
Sbjct: 817  HLQRNKRCKCYLCGQEGHFARECPNDRRSIKRVVIFENLDLPEDCDIVSVQEGDNESDAI 876

Query: 1591 FSVSEGEDKE-ISRTLKVCIQEEYIYMLGEID-------GGYRPQIRLPENQLNCFHTWQ 1746
            +S+SEGE+ E ++++L V    E++Y   E D        GYR  I+  + Q +C H W+
Sbjct: 877  YSISEGEEMEDLTKSLNVMSVSEHLYYFREEDQTYCIGGEGYRSMIKATKTQHDCNHVWE 936

Query: 1747 LNSFVQPQQETCICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP* 1926
             N         C   K +T    R+ CP+C +T CNLC  Y F ++VP +  +P Q+ P 
Sbjct: 937  YNG---AGSLKCFYYKEETSVNCRMHCPQCLITTCNLCALYYFGQKVPASRPSPIQYNPL 993

Query: 1927 NLIHEQNYYILWCEGKIDRLKKEVEHLRKELQ--EAKLMQT----LKRDFEELKAFKGKE 2088
            +L+HEQ  YI WCE +I RLK+EVE  +K+ +  + K + T     +++F+EL   KGK 
Sbjct: 994  SLMHEQQGYITWCEAEITRLKQEVETSKKQTEYWKQKYLSTQEEVFEKEFDELYKEKGKG 1053

Query: 2089 VCGEPDPQEGMSREHTNILFH---QSILKVSQEGISGPRLVRNMLYNMKIEPEISGIPRF 2259
            V         + +E TN++     Q IL + +  +S P+  +NMLYN+ +E  I  +  F
Sbjct: 1054 V---------VIQEATNVVRQIETQKILSIEKNELSPPKKTKNMLYNLILEINIPDVANF 1104

Query: 2260 PVRAILDTGVTTCCIDERAVPSEALEKNGTLVQFSGIKN----------GKMHIGEN 2400
             V AILDTG +TCCI+  A+P  A+E+   +  FSGI +          GKM IG+N
Sbjct: 1105 SVHAILDTGASTCCINAEAIPENAVEEIPFMANFSGINSKVSTNKKLRYGKMIIGDN 1161



 Score =  136 bits (343), Expect(3) = 0.0
 Identities = 64/104 (61%), Positives = 80/104 (76%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN ++ QGFTD  DK+E +ENLLGE EK+ W QWRM + + FQ +L +A GR+GTQNILS
Sbjct: 598  KNLVSQQGFTDPNDKVEFIENLLGEAEKIAWIQWRMTFLEAFQQMLESADGRQGTQNILS 657

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDIKIYARIY 1067
            Q+RRVF+LEDP QGST +Q+ A RDLE+LSC N+KDI  Y   Y
Sbjct: 658  QIRRVFTLEDPYQGSTAMQEEALRDLEKLSCHNLKDIVAYMNEY 701



 Score =  129 bits (323), Expect(3) = 0.0
 Identities = 101/349 (28%), Positives = 151/349 (43%), Gaps = 97/349 (27%)
 Frame = +2

Query: 2    DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLNTVRLPTEVQSQNLLNGNIHISFERYV 181
            DYL + GVRA+PGRR   +E+QG NW+VRP + +  R PTEV ++  ++G I + F  Y 
Sbjct: 252  DYLVSHGVRAIPGRRRTVQELQGYNWVVRPTQASIPRQPTEVDTRTNIDGTISLRFGNYT 311

Query: 182  AA----------------------------------AEPARASTS*VPSNR-----EEGT 244
            +A                                  A+PA   T   PS +        T
Sbjct: 312  SARTSTTRRIAYNLRDEEIQSDEEQIIAVFKLDCYEAQPAIWDTLGEPSGKFGYYVRYDT 371

Query: 245  PEEGMHYLAAFI------EDEPIYDISEEDEEALFPAYDSEGELNYPQRRE-------EE 385
             ++ +H     I      +D+     S  DE +      + G  + P  ++        +
Sbjct: 372  HDDNLHIPLEHIIATGWDDDDDDCTTSSSDEASYLQHLSNLGGTSVPIEQDLPYPVPISD 431

Query: 386  FCNPFAQKE----------------AVIQEDIL---------AVGYEAEI-------DDL 469
              NPFA  E                +  +E+IL            Y A         D++
Sbjct: 432  MINPFASTEGGGDKAPINNFPIFDKSDEEEEILPSSDSCRKEIASYIAAAFPENNADDEI 491

Query: 470  EYPILKKLKEHVYSGTLTSATSPYRPPEDASMGPPSYPAFRLDETRPH------------ 613
            +YP LK L++H+Y+    SA + Y+PP+D +MGPP+Y    L   RP             
Sbjct: 492  DYPQLKNLQQHLYAS--PSAITGYKPPQDVAMGPPNYGPTPLRVIRPEAGPSRPAFEGYK 549

Query: 614  -GNIRFRGGINNEMWSLPSA*QNNGAMFVIPEQLGLFDDAFSGWESITK 757
             G +R++    +E W+LPSA    GA+F+IP QLG+F+D F  WESITK
Sbjct: 550  PGEVRYKTKDYSEWWNLPSAQYGTGAIFIIPTQLGMFNDTFMRWESITK 598


>gb|ASG91848.1| polyprotein [Cacao swollen shoot virus]
          Length = 1837

 Score =  401 bits (1031), Expect(3) = e-175
 Identities = 208/460 (45%), Positives = 288/460 (62%), Gaps = 16/460 (3%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            ++++++Y RL AK+GRLF+G EL EK W+KMP ++G RM+E+F K+Y G  +GV PRILF
Sbjct: 658  VQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELGHRMREAFQKEYSGNEVGVFPRILF 717

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYKTEKKYSIRRSQTCKGKPHDTHMRIEK 1404
            AYKYLE ECK+ A+KRSLK LSFC  +P+ GYY    KY +R+S+T KGKPH +H RIEK
Sbjct: 718  AYKYLEQECKDAAFKRSLKSLSFCKDMPLTGYYDKAPKYGMRKSKTYKGKPHTSHARIEK 777

Query: 1405 RKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQSD 1584
            RKHL+RNKKCKCYLCG EG+FARECPN KR++KRVA++E + +P+ F+I+S+ +GED SD
Sbjct: 778  RKHLIRNKKCKCYLCGDEGHFARECPNNKRDVKRVAIFEGINLPEGFDIVSVEEGEDDSD 837

Query: 1585 AIFSVSEGEDKEISRTLKVCIQEEYIYMLGEIDGGY--------RPQIRLPENQLNCFHT 1740
            AI+S+SE E+ E    L   + +E ++M+ E D  Y           +R+   Q +C H 
Sbjct: 838  AIYSISENENGE---ELDEEVVQEKVFMMKEEDQSYWLGKTNHWTAMVRVSSQQYHCLHQ 894

Query: 1741 WQLNSFVQPQQE-TCICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQF 1917
            W+ N  +       C  CK+ T  R+RI CP C++T+C +C P      V   P  P  F
Sbjct: 895  WEHNKEITTVAHINCHFCKQPTQLRSRIHCPTCKLTSCFMCAPIYCNTTVQQQPKPPTPF 954

Query: 1918 FP*NLIHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQTLKRDFEELKAFKGKEVCG 2097
                L+ +Q  YI W EG+  RL + VE  +KE  + +L + L+RD + L+  K KE   
Sbjct: 955  NTHTLLQQQAAYIQWLEGENQRLTEAVEFYKKEAADLRLEKELERDRQSLEP-KMKERGK 1013

Query: 2098 EPDPQEGMSREHTNILFHQSILKV------SQEGISGPRLVRNMLYNMKIEPEISGIPR- 2256
            +   QE    EH   L   +I ++       Q+ +  P    NMLYN+ +   I  + R 
Sbjct: 1014 KVQIQEPSDDEHIAYLEEDTISRIIGHTMEGQQEVKKPAQRGNMLYNLDVVLIIPEVGRP 1073

Query: 2257 FPVRAILDTGVTTCCIDERAVPSEALEKNGTLVQFSGIKN 2376
              V+AILDTG TTCCID  +VP  A+E+N  LVQF GI +
Sbjct: 1074 IKVKAILDTGATTCCIDINSVPKAAIEQNTFLVQFRGINS 1113



 Score =  152 bits (385), Expect(3) = e-175
 Identities = 72/104 (69%), Positives = 85/104 (81%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN++A QGFTD  +KME +ENLLGETEKLTW QWRM Y  E+Q +L  A GR+GTQNILS
Sbjct: 561  KNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMSYEAEYQQLLTQADGRQGTQNILS 620

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDIKIYARIY 1067
            Q++RVFSLEDPA GST+IQDAAYRDLERL+C N+KDI  +   Y
Sbjct: 621  QIKRVFSLEDPASGSTKIQDAAYRDLERLTCHNIKDIVQFLNDY 664



 Score =  115 bits (288), Expect(3) = e-175
 Identities = 97/317 (30%), Positives = 142/317 (44%), Gaps = 63/317 (19%)
 Frame = +2

Query: 2    DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLN-TVRLPTEVQSQNLLNGNIHISFERY 178
            DYLA+ GV+A+ G++ D + ++ + WI+RPP  + T   P  V+++NL++G+I I F  Y
Sbjct: 254  DYLASHGVKAIAGKKIDLQHLRNQQWILRPPHADITPMQPRSVETRNLIDGSISIRFHDY 313

Query: 179  VAAAEPARASTS*VPSNREEGTPEE-GMHYLAAFIEDEPIYDI----------------- 304
              A   +    +      E  T  E   H +A +I +E + D                  
Sbjct: 314  EVAPSTSGPHYNSNDEEVESETESEIREHIIAVWIGEEEVPDQTGRKKEWEESSNGNGRF 373

Query: 305  --------------------SEEDEEALFPAYDS---EGELNYP---QRREEEFCNP--- 397
                                S+ED+E + P +D    E  LN P   Q  EE+  +P   
Sbjct: 374  FRYYTPPPATNEQIIATGWGSDEDDEDIPPKWDESLDEEGLNEPIWDQEEEEDEYDPNVY 433

Query: 398  --FAQKEAVIQEDILAVGYEAEIDDLEYPILKKLKEHVYSGTLTSATSPYRPPEDASMGP 571
              + QKE    ++I A   E    +LEYP  +   E  +S T+      Y PP D  M P
Sbjct: 434  MAYLQKEEDKWQEIAATIQEER--ELEYPRRRPQTETAFSETVD-----YTPPVDTMMTP 486

Query: 572  PSYP---AFRLDETRPHGNIRFRGGINN----------EMWSLPSA*QNNGAMFVIPEQL 712
              YP   + R   T P     F G I++          E W LPS+    GA+FV+P+Q+
Sbjct: 487  VGYPPASSSRSTVTTPSRPPLFEGRISHVPKFKRDDYTEWWQLPSSQGTTGALFVMPKQM 546

Query: 713  GLFDDAFSGWESITKKF 763
            GLF D FS WESITK +
Sbjct: 547  GLFHDVFSRWESITKNY 563


>gb|ATZ69449.1| ORF3 polyprotein [Cacao swollen shoot virus]
          Length = 1841

 Score =  400 bits (1027), Expect(3) = e-172
 Identities = 208/463 (44%), Positives = 291/463 (62%), Gaps = 19/463 (4%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            ++++++Y RL AK+GRLF+G EL EK W+KMP ++G RMKE+F K+Y G  +GV PRILF
Sbjct: 659  VQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELGHRMKEAFQKEYSGNEVGVFPRILF 718

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYKTEKKYSIRRSQTCKGKPHDTHMRIEK 1404
            AYKYLE ECK+ A+KRSLK LSFC  +P+ GYY    KY +R+S+T KGKPH +H R+EK
Sbjct: 719  AYKYLEQECKDAAFKRSLKSLSFCKDMPLTGYYDQPPKYGMRKSKTYKGKPHASHARVEK 778

Query: 1405 RKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQSD 1584
            RKHL+RNKKCKCYLCG EG+FA+ECPN KR++KRVA++E + +P+ F+I+S+ +GED SD
Sbjct: 779  RKHLIRNKKCKCYLCGDEGHFAKECPNNKRDVKRVAIFEGINLPEGFDIVSVEEGEDDSD 838

Query: 1585 AIFSVSEGEDKEISRTLKVCIQEEYIYMLGEIDGGY--------RPQIRLPENQLNCFHT 1740
            AI+S+SE E+ E    L   + +E I+M+ E D  Y           +R+   Q +C H 
Sbjct: 839  AIYSISENENGE---ELDAEVVQEKIFMMKEEDQSYWLGKTNHWTAMVRVSSQQYHCMHQ 895

Query: 1741 WQLNSFVQPQQE-TCICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQF 1917
            W+ N  +       C  CK+ T  R+RI CP C++T+C +C P      V   P  PA F
Sbjct: 896  WEHNKEIMVVAHINCHFCKQPTQLRSRIHCPTCKLTSCFMCAPIYCNTTVQQQPKPPAPF 955

Query: 1918 FP*NLIHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQTLKRDFEELK---AFKGKE 2088
                L+ +Q  YI W EG+  RL + VE  ++E    KL + L++D  EL+     +GK+
Sbjct: 956  NTNTLLQQQAAYIQWLEGENQRLTEAVEFYKQEAANLKLEKDLEKDRRELEPKIQDRGKK 1015

Query: 2089 VCGEPDPQEGMSREHTNILFHQSILKV------SQEGISGPRLVRNMLYNMKIEPEISGI 2250
            V      Q   S EHT  L   ++ ++       Q+ ++ P    NMLYN+ +   I  +
Sbjct: 1016 V------QIYESSEHTAYLEEDTVCRIIGHTTEEQKEVTKPVKRGNMLYNLDVVLHIPEV 1069

Query: 2251 PR-FPVRAILDTGVTTCCIDERAVPSEALEKNGTLVQFSGIKN 2376
             R   V+AILDTG TTCCI+  +VP  A+E+N  LVQF GI +
Sbjct: 1070 GRPIKVKAILDTGATTCCINVNSVPKTAIEQNTFLVQFRGINS 1112



 Score =  152 bits (384), Expect(3) = e-172
 Identities = 72/104 (69%), Positives = 84/104 (80%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN++A QGFTD  +KME +ENLLGETEKLTW QWRM Y  E+Q +L  A GR+GTQNILS
Sbjct: 562  KNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMSYEAEYQQLLTQADGRQGTQNILS 621

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDIKIYARIY 1067
            Q++RVFSLEDPA GST IQDAAYRDLERL+C N+KDI  +   Y
Sbjct: 622  QIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDY 665



 Score =  107 bits (268), Expect(3) = e-172
 Identities = 90/316 (28%), Positives = 136/316 (43%), Gaps = 62/316 (19%)
 Frame = +2

Query: 2    DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLN-TVRLPTEVQSQNLLNGNIHISFERY 178
            DYLA+ GV+A+ GR+ + + ++ + W++RPP+ N T   P  V+++NL++G+I I F  Y
Sbjct: 254  DYLASHGVKAIAGRKVNLQHLRNQQWVLRPPQANITPMQPRSVETRNLIDGSISIRFHDY 313

Query: 179  VAAAEPARASTS*VPSNREEGTPEEGM-HYLAAFIEDEPIYDISE--------------- 310
             AA   +R   +      E  T  E   H +A +I +E + D +                
Sbjct: 314  EAAVSTSRPHYNEEDEEVESETESEIRGHTVAVWIGEEEVPDQTGRKKVWEESSNGNGRF 373

Query: 311  -----------------------EDEEALFPAYDSEGELNYP------QRREEEFCNP-- 397
                                   ED++ L P +D   +   P      Q  EE+  +P  
Sbjct: 374  FRYYTPPPTSNEQIIATGWGSDIEDDDELPPEWDESPDEEGPSEPIWDQEEEEDEYDPNI 433

Query: 398  -FAQKEAVIQEDILAVGYEAEIDDLEYPILKKLKEHVYSGTLTSATSPYRPPEDASMGPP 574
              AQ +    E +       E  ++EYP  +   E V+S T+      Y PP D  M P 
Sbjct: 434  YMAQLQKEEDEWLEIAATLQEEREMEYPRRRPQTETVFSETVD-----YTPPTDTMMTPV 488

Query: 575  SYPAFR-------------LDETRPHGNIRFRGGINNEMWSLPSA*QNNGAMFVIPEQLG 715
             YP                L E R      F+     E W LPS+    GA+FV+P+Q+G
Sbjct: 489  GYPPASSSRSTVTTSSRPPLFEGRTTHVPSFKRDNYTEWWQLPSSQGTTGALFVMPKQMG 548

Query: 716  LFDDAFSGWESITKKF 763
            LF + FS WESITK +
Sbjct: 549  LFHEVFSRWESITKNY 564


>emb|CAD59232.1| polyprotein [Cacao swollen shoot virus]
          Length = 1839

 Score =  397 bits (1021), Expect(3) = e-172
 Identities = 205/459 (44%), Positives = 294/459 (64%), Gaps = 15/459 (3%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            ++++++Y RL AK+GRLF+G EL EK W+KMP ++G RMKE+F K+Y G  +GV PRILF
Sbjct: 657  VQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELGHRMKEAFQKEYSGNEVGVFPRILF 716

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYKTEKKYSIRRSQTCKGKPHDTHMRIEK 1404
            AY+YLE ECK+ A+KRSLK LSFC  +P+ GYY    KY +R+S+T KGKPH +H R+EK
Sbjct: 717  AYRYLEQECKDAAFKRSLKSLSFCKDMPLTGYYDKTSKYGMRKSRTYKGKPHASHARVEK 776

Query: 1405 RKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQSD 1584
            RKHL+RNKKCKCYLCG EG+FARECPN++R++KRVA++E +++P+ F+I+S+ +GE++SD
Sbjct: 777  RKHLIRNKKCKCYLCGDEGHFARECPNQRRDVKRVAIFEGIDLPEGFDIVSVEEGEEESD 836

Query: 1585 AIFSVSEGEDKE-----ISRTLKVCIQEEYIYMLGEIDGGYRPQIRLPENQLNCFHTWQL 1749
            AI+S+SE ED E     +   + V  +E+  Y LG+ +  +   +R+   Q +C H W+ 
Sbjct: 837  AIYSISENEDGELDTEAVHEKVFVMREEDQSYWLGKTN-HWTAMVRVSSQQYHCMHQWEH 895

Query: 1750 N-SFVQPQQETCICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP* 1926
            N   +      C  CK+ T  R+RI CP CQ+T+C +C P      V   P  P  F   
Sbjct: 896  NKEILVVAHINCHFCKQPTQLRSRIHCPTCQLTSCFMCAPIYCNIMVQQQPKPPVPFNSH 955

Query: 1927 NLIHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQTLKRDFEELKAF---KGKEVCG 2097
             L+ +Q  YI W E +  RL + VE  +KE +E +L + L++D   L+     KGK+V  
Sbjct: 956  TLLQQQAAYIQWLEKENQRLTEAVEFYKKEAEELRLERDLEQDRRSLEPTLLNKGKKV-Q 1014

Query: 2098 EPDPQEGMSREHTNILFHQSILK-----VSQEGISGPRLVRNMLYNMKIEPEISGIPR-F 2259
              DP+     ++T  L   +I +     V Q+ +  P    NMLYN+ +   I  + R  
Sbjct: 1015 ILDPESPDEDQYTAYLEEDTISRVIGHTVEQQEVRKPVKKGNMLYNLDVVLHIPEVGRPI 1074

Query: 2260 PVRAILDTGVTTCCIDERAVPSEALEKNGTLVQFSGIKN 2376
             V+AILDTG TTCCI+  +VP  A+E+N  LVQF GI +
Sbjct: 1075 KVKAILDTGATTCCININSVPQTAIEQNTFLVQFRGINS 1113



 Score =  152 bits (384), Expect(3) = e-172
 Identities = 72/104 (69%), Positives = 84/104 (80%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN++A QGFTD  +KME +ENLLGETEKLTW QWRM Y  E+Q +L  A GR+GTQNILS
Sbjct: 560  KNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILS 619

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDIKIYARIY 1067
            Q++RVFSLEDPA GST IQDAAYRDLERL+C N+KDI  +   Y
Sbjct: 620  QIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDY 663



 Score =  109 bits (272), Expect(3) = e-172
 Identities = 93/318 (29%), Positives = 138/318 (43%), Gaps = 64/318 (20%)
 Frame = +2

Query: 2    DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLN-TVRLPTEVQSQNLLNGNIHISFERY 178
            DYLA+ GV+A+ G++ + + ++ + WI+RPP+ + T   P  V+++NL++G+I I F  Y
Sbjct: 254  DYLASHGVKAIAGKKMNLQHLRNQQWILRPPQTDITPMQPRSVETRNLVDGSISIRFHDY 313

Query: 179  VAAAEPARASTS*VPSNREEGTPEE-GMHYLAAFIEDEPIYDI----------------- 304
             AA   +R   +      E  T  E   H +A +I +E I D                  
Sbjct: 314  EAATSASRPHYNEEDEEVESETESEIREHTIAVWIGEEEIPDQTGKKKVWEESSNGNGRF 373

Query: 305  --------------------SEEDEEALFPAYDSEGELNYP------QRREEEFCNP--- 397
                                S+ D+E   P +D   +   P      Q  EE+  +P   
Sbjct: 374  FWYYTPPPTFEGQIIATGWGSDNDDEKTPPKWDESSDEEGPTEPIWDQEEEEDEYDPNVY 433

Query: 398  --FAQKEAVIQEDILAVGYEAEIDDLEYPILKKLKEHVYSGTLTSATSPYRPPEDASMGP 571
              + QKE    ++I A   E    ++EYP     K    + T  S T  Y PP D  M P
Sbjct: 434  RAYLQKEEDEWQEITASLRE----EMEYP-----KRRPQTETAFSETVDYTPPGDTMMTP 484

Query: 572  PSYP---AFRLDETRPHGNIRFRGGINN-----------EMWSLPSA*QNNGAMFVIPEQ 709
              YP   + R   T P     F G   +           E W LPS+    GA+FV+P+Q
Sbjct: 485  VGYPPASSSRSTVTTPSRPPLFEGRTTHVPRFLKRDEYTEWWQLPSSQGTTGALFVMPKQ 544

Query: 710  LGLFDDAFSGWESITKKF 763
            +GLF + FS WESITK +
Sbjct: 545  MGLFHEVFSRWESITKNY 562


>ref|NP_041734.1| polyprotein [Cacao swollen shoot virus]
 gb|AAA03171.1| polyprotein [Cacao swollen shoot virus]
          Length = 1834

 Score =  398 bits (1022), Expect(3) = e-172
 Identities = 207/462 (44%), Positives = 292/462 (63%), Gaps = 18/462 (3%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            ++++++Y RL AK+GRLF+G EL EK W+KMP ++G RMKE+F K+Y G  +GV PRILF
Sbjct: 657  VQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELGHRMKEAFQKEYSGNEVGVFPRILF 716

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYKTEKKYSIRRSQTCKGKPHDTHMRIEK 1404
            AY+YLE ECK+ A+KRSLK LSFC  +P+ GYY    KY +R+S+T KGKPH +H R+EK
Sbjct: 717  AYRYLEQECKDAAFKRSLKSLSFCKDMPLTGYYDKTSKYGMRKSRTYKGKPHASHARVEK 776

Query: 1405 RKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQSD 1584
            RKHL+RNKKCKCYLCG EG+FARECPN++R++KRVA++E +++P+ F+I+S+ +GE++SD
Sbjct: 777  RKHLIRNKKCKCYLCGDEGHFARECPNQRRDVKRVAIFEGIDLPEGFDIVSVEEGEEESD 836

Query: 1585 AIFSVSEGEDKEISRTLKVCIQEEYIYMLGEIDGGY--------RPQIRLPENQLNCFHT 1740
            AI+S+SE ED E+       +  E ++M+ E D  Y           +R+   Q +C H 
Sbjct: 837  AIYSISENEDGELDTE----VVHEKVFMMREEDQSYWLGKTNHWTAMVRVSSQQYHCMHQ 892

Query: 1741 WQLN-SFVQPQQETCICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQF 1917
            W+ N   +      C  CK+ T  R+RI CP CQ+T+C +C P      V   P  P  F
Sbjct: 893  WEHNKEILVVAHINCHFCKQPTQLRSRIHCPTCQLTSCFMCAPIYCNMIVQQQPKPPVPF 952

Query: 1918 FP*NLIHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQTLKRDFEELKAF---KGKE 2088
                L+ +Q  YI W E +  RL + VE  +KE +E +L + L++D   L+     KGK+
Sbjct: 953  NTHTLLQQQAAYIQWLEKENQRLTEAVEFYKKEAEELRLERDLEQDRRSLEPTLLDKGKK 1012

Query: 2089 VCGEPDPQEGMSREHTNILFHQSILK-----VSQEGISGPRLVRNMLYNMKIEPEISGIP 2253
            V    DP E    +HT  L   +I +     V Q+ +  P    NMLYN+ +   I  + 
Sbjct: 1013 V-QILDPDED---QHTAYLEEDTISRVIGHTVEQQEVRKPVKKGNMLYNLDVVLHIPEVG 1068

Query: 2254 R-FPVRAILDTGVTTCCIDERAVPSEALEKNGTLVQFSGIKN 2376
            R   V+AILDTG TTCCI+  +VP  A+E+N  LVQF GI +
Sbjct: 1069 RPIKVKAILDTGATTCCININSVPQTAIEQNTFLVQFRGINS 1110



 Score =  152 bits (383), Expect(3) = e-172
 Identities = 71/104 (68%), Positives = 84/104 (80%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN++A QGFTD  +KME +ENLLGETEKLTW QWRM Y  E+Q +L  A GR+GTQNILS
Sbjct: 560  KNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILS 619

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDIKIYARIY 1067
            Q++R+FSLEDPA GST IQDAAYRDLERL+C N+KDI  +   Y
Sbjct: 620  QIKRIFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDY 663



 Score =  107 bits (268), Expect(3) = e-172
 Identities = 92/318 (28%), Positives = 139/318 (43%), Gaps = 64/318 (20%)
 Frame = +2

Query: 2    DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLN-TVRLPTEVQSQNLLNGNIHISFERY 178
            DYLA+ GV+A+ G++ + + ++ + WI+RPP+ + T   P  V+++NL++G+I I F  Y
Sbjct: 254  DYLASHGVKAIAGKKMNLQHLRNQQWILRPPQTDITPMQPRSVETRNLVDGSISIRFHDY 313

Query: 179  VAAAEPARASTS*VPSNREEGTPEE-GMHYLAAFIEDEPIYDI----------------- 304
             AA   +R   +      E  T  E   H +A +I +E I D                  
Sbjct: 314  EAATSASRPHYNEEDEEVESETESEIREHTIAVWIGEEEIPDQTGRKKVWEESSNGNGRF 373

Query: 305  --------------------SEEDEEALFPAYDSEGELNYP------QRREEEFCNP--- 397
                                S++D E   P +D   +   P      Q  EE+  +P   
Sbjct: 374  FRYYTPPPTFEGQIIATGWGSDDDNEKTPPKWDESPDEEGPTEPIWDQEEEEDEYDPNVY 433

Query: 398  --FAQKEAVIQEDILAVGYEAEIDDLEYPILKKLKEHVYSGTLTSATSPYRPPEDASMGP 571
              + QKE    ++I A   E    ++EYP  +   E  +S T+      Y PP D  M P
Sbjct: 434  RAYLQKEEDEWQEITASLRE----EMEYPKRRPQTEMAFSETVD-----YTPPGDTMMTP 484

Query: 572  PSYP---AFRLDETRPHGNIRFRGGINN-----------EMWSLPSA*QNNGAMFVIPEQ 709
              YP   + R   T P     F G   +           E W LPS+    GA+FV+P+Q
Sbjct: 485  VGYPPASSSRSTVTTPSRPPLFEGRTTHVPRFLKRDEYTEWWQLPSSQGTTGALFVMPKQ 544

Query: 710  LGLFDDAFSGWESITKKF 763
            +GLF + FS WESITK +
Sbjct: 545  MGLFHEVFSRWESITKNY 562


>gb|ATZ69482.1| ORF3 polyprotein [Cacao swollen shoot Ghana M virus]
          Length = 1831

 Score =  392 bits (1006), Expect(3) = e-172
 Identities = 205/462 (44%), Positives = 291/462 (62%), Gaps = 16/462 (3%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            ++++++Y RL AK+GR+F+G EL EK W+KMP ++G RM+E+F+K+Y G  +GV PRILF
Sbjct: 643  VQFLNDYGRLAAKSGRMFLGTELSEKLWMKMPPELGHRMREAFHKEYSGNEVGVFPRILF 702

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYKTEKKYSIRRSQTCKGKPHDTHMRIEK 1404
            AYKYLE ECK+ A+KRSLK LSFC  +PI GYY    KY IRRS+T +GKPH+TH R+EK
Sbjct: 703  AYKYLEQECKDAAFKRSLKSLSFCKDMPITGYYDRGPKYGIRRSKTYRGKPHETHARVEK 762

Query: 1405 RKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQSD 1584
            RKHL+RNKKCKCYLCG EG+FARECPN KR++KRVA++E +++P+ ++I+S+ +GE +SD
Sbjct: 763  RKHLIRNKKCKCYLCGDEGHFARECPNSKRDVKRVAIFEGIDLPEGYDIISVEEGEAESD 822

Query: 1585 AIFSVSEGED----KEISRTLKVCI--QEEYIYMLGEIDGGYRPQIRLPENQLNCFHTWQ 1746
            AI+S+SE ED    +E  +T KV +  +E+  Y LG     +   +++   Q NC H W+
Sbjct: 823  AIYSISENEDEVLPEEGVKTEKVFMFREEDQTYWLGR-KNHWTAMVKVSSQQYNCLHQWE 881

Query: 1747 LN-SFVQPQQETCICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP 1923
             N    Q     C  CK++T  R+RI C  C +TAC +C P      V  AP     + P
Sbjct: 882  HNQEITQVAYLKCYFCKQQTHIRSRIHCSTCTLTACFMCAPVYCNTTVQQAPKQAIPYNP 941

Query: 1924 *NLIHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQTLKRDFEELKAFKGKEVCG-- 2097
              L+ +Q  YI W E +  RL + VE  + E+ E K+ + L+    EL+    K+  G  
Sbjct: 942  NTLLQQQQGYIQWLEAENKRLAETVELYKHEIAELKMEKELELSRRELERETPKKPHGKG 1001

Query: 2098 ----EPDPQEGMSREHT--NILFHQSILKVSQEGISGPRLVRNMLYNMKIEPEISGIPR- 2256
                E D Q     E T   ++ H +     ++ +S P    NMLYNM +   I  + R 
Sbjct: 1002 IQIKEDDEQSAYLEEDTIVRVIGHGT----EEQQVSKPVKKGNMLYNMDVVLMIPEVGRP 1057

Query: 2257 FPVRAILDTGVTTCCIDERAVPSEALEKNGTLVQFSGIKNGK 2382
              V+AILDTG TTCCI+  +VP+ A+E+N  +V F GI + +
Sbjct: 1058 IKVKAILDTGATTCCINIASVPATAIEQNTFMVHFKGINSSQ 1099



 Score =  149 bits (376), Expect(3) = e-172
 Identities = 69/104 (66%), Positives = 84/104 (80%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN++A QGFTD  +K+E +ENLLGETEKLTW QWRM Y  E+Q ++  A GR+GTQNILS
Sbjct: 546  KNYVAAQGFTDPVEKVEFMENLLGETEKLTWIQWRMNYEAEYQQLITQADGRQGTQNILS 605

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDIKIYARIY 1067
            Q++RVFSLEDPA GST +QDAAYRDLERL+C N+KDI  +   Y
Sbjct: 606  QIKRVFSLEDPASGSTRVQDAAYRDLERLTCHNIKDIVQFLNDY 649



 Score =  116 bits (291), Expect(3) = e-172
 Identities = 97/313 (30%), Positives = 145/313 (46%), Gaps = 59/313 (18%)
 Frame = +2

Query: 2    DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLN-TVRLPTEVQSQNLLNGNIHISFERY 178
            DYLA+ GVRA+ G++FD  +++G+ WI+RPP+ + T   P  V+++NL++G+I I F  Y
Sbjct: 252  DYLASHGVRAIAGKKFDLHKLRGQQWILRPPQADITPMQPRTVETRNLIDGSISIRFHDY 311

Query: 179  VAAAEPARASTS*----VPSNRE--------------EGTP---------EEGMHYLAAF 277
             AA   +R + +     V S+ E              E  P         EE M+    F
Sbjct: 312  EAAPSTSRPTYNEQDEEVESDEESELREHTIAVWFGPEELPDATGRIKVWEESMNGNGRF 371

Query: 278  I--------------------EDEPIYDISEEDEEALFPAYDSEGELNYPQRREEEFCNP 397
                                 ++ PI+D S EDE+      D         ++EE+    
Sbjct: 372  FRYYTPPPENDTQIVATGWDDDEPPIWDKSSEDEDEGNEDDDDPNTYMLQLQKEED---- 427

Query: 398  FAQKEAVIQEDILAVGYEAEIDDLEYPILKKLKEHVYSGTLTSATSPYRPPEDASMGPPS 577
               +   I+E+I A G++   ++LEYP+ K L E     T+ S    Y PP D  M P  
Sbjct: 428  ---EWQEIKEEI-AAGWQ---ENLEYPVKKPLTE-----TVLSEVVDYNPPGDTLMTPVG 475

Query: 578  YPAFR-----------LDETRPHGNIRFRGGINNEMWSLPSA*QNNGAMFVIPEQLGLFD 724
            YP              L E +     RF+    +E W LPS+    GA+FV+P+Q+GLF 
Sbjct: 476  YPPASTTRSQVPDKPPLFEGQSSHVPRFKKDNYSEWWQLPSSQGTTGALFVMPKQIGLFH 535

Query: 725  DAFSGWESITKKF 763
            D FS WES+TK +
Sbjct: 536  DVFSRWESVTKNY 548


>gb|ACH86211.1| unknown [Citrus yellow mosaic virus]
          Length = 1490

 Score =  443 bits (1139), Expect(3) = e-171
 Identities = 232/473 (49%), Positives = 310/473 (65%), Gaps = 21/473 (4%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            ++Y++++MR+ AKTGR+FIG EL EK WLKMPGD+G+RMK+++ +K+PG ++GV PRILF
Sbjct: 304  VQYLNDFMRIAAKTGRMFIGPELSEKLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILF 363

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYY---KTEKKYSIRRSQTCKGKPHDTHMR 1395
            AYKYLE ECK+ A++RSLK+LSFCS IPIPGYY     EK+Y +RR+ T KGKPH+TH R
Sbjct: 364  AYKYLEGECKDAAFRRSLKNLSFCSSIPIPGYYGGRSGEKRYGVRRTTTYKGKPHNTHAR 423

Query: 1396 IEKRKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGED 1575
            IEK KH LRNKKCKCYLCG+EG+FARECP+++RN+KRVA++E L++PDD EI+SI +GE 
Sbjct: 424  IEKTKH-LRNKKCKCYLCGEEGHFARECPSDRRNVKRVAMFEGLDLPDDCEIVSIDEGEP 482

Query: 1576 QSDAIFSVSEGEDKEISRTLKVCIQEEY--IYMLGEIDGGYRPQIRLPENQLNCFHTWQL 1749
             SDAIFS+SEGE+           QEE    Y LG+  GGY+  +++ +    C H W+ 
Sbjct: 483  DSDAIFSISEGEETGAIEEQCFVFQEECNGTYWLGK-RGGYQDLVQISKEIYYCQHEWEE 541

Query: 1750 NSFV-QPQQETCICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP* 1926
            N  +  P    C  CKR+T  RAR+ C  C +T+C +CGP  F +++ V P   A F   
Sbjct: 542  NQPIDDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQPMPQAPFNQK 601

Query: 1927 NLIHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQTLKRDFEEL-----KAFKGKEV 2091
             L+ +Q  YI WC  +I RLK+EV   ++  QE +L   L++  +EL     +  K K V
Sbjct: 602  GLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGTDARRRKDKGV 661

Query: 2092 CGEPDPQEGMSREHTNILFHQSILKVSQEGISGPRLVRNMLYNMKIEPEISGIPRFPVRA 2271
              +         E T I+ H          ++  R V+NMLYNM +  EI GIP F V+A
Sbjct: 662  VIDEGSCYFNPEETTRIIAH------GDTQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKA 715

Query: 2272 ILDTGVTTCCIDERAVPSEALEKNGTLVQFSG----------IKNGKMHIGEN 2400
            ILDTG TTCCID R+VP +ALE+N  +V FSG          IK GKM I E+
Sbjct: 716  ILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKIKAGKMFINEH 768



 Score =  137 bits (346), Expect(3) = e-171
 Identities = 64/100 (64%), Positives = 78/100 (78%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            K ++A QG TD +DK + +EN+LG TEK+ WTQWRM Y  E++ ++  A GREGTQNILS
Sbjct: 207  KAYVAQQGITDPKDKADFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILS 266

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDIKIY 1055
            QMRRVFSLEDPA GST +QD AYRDLERL+C +VK I  Y
Sbjct: 267  QMRRVFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQY 306



 Score = 75.1 bits (183), Expect(3) = e-171
 Identities = 51/134 (38%), Positives = 68/134 (50%), Gaps = 22/134 (16%)
 Frame = +2

Query: 446 YEAEIDDLEYPILKKLKEHVYSG--------TLTSATSPYRPPEDASMGPPSYPAFRLDE 601
           +EAE D   YP   KL+ H  SG         L+SA S Y PP D +M P +YP  + + 
Sbjct: 86  HEAEFD---YPAFAKLQAHEESGQLKPKTEKVLSSAISSYNPPRDTAMTPVAYPPAQ-NV 141

Query: 602 TRPHGNIR-----FRGGI---------NNEMWSLPSA*QNNGAMFVIPEQLGLFDDAFSG 739
             P  N       F G           N+   SLPSA QN GA+F++P+Q+GLF + F+ 
Sbjct: 142 ASPSYNPSPQMPMFEGYYPKRPNFKRDNHAFISLPSAQQNTGALFIMPQQIGLFHEVFTS 201

Query: 740 WESITKKFYC*PGI 781
           WE+ITK +    GI
Sbjct: 202 WEAITKAYVAQQGI 215


>gb|ASG91896.1| polyprotein [Cacao swollen shoot virus]
          Length = 1845

 Score =  391 bits (1005), Expect(3) = e-171
 Identities = 205/464 (44%), Positives = 291/464 (62%), Gaps = 20/464 (4%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            ++++++Y RL AK+GRLF+G EL EK W+KMP ++G RMKE+F K+Y G  +GV PRILF
Sbjct: 660  VQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELGHRMKEAFQKEYSGNEVGVFPRILF 719

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYKTEKKYSIRRSQTCKGKPHDTHMRIEK 1404
            AY+YLE ECK+ A+KRSLK LSFC  +P+ GYY    KY +R+S+T KGKPH +H R+EK
Sbjct: 720  AYRYLEQECKDAAFKRSLKSLSFCKDMPLTGYYDKTPKYGMRKSKTYKGKPHASHARVEK 779

Query: 1405 RKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQSD 1584
            RKHL+RNKKCKCYLCG EG+FARECPN KR++KRVA++E + +P+ F+I+S+ +GED SD
Sbjct: 780  RKHLIRNKKCKCYLCGDEGHFARECPNNKRDVKRVAIFEGINLPEGFDIVSVEEGEDDSD 839

Query: 1585 AIFSVSEGEDKEISRTLKVCIQEEYIYMLGEIDGGY--------RPQIRLPENQLNCFHT 1740
            AI+S+SE E+ E    L   + +E ++M+ E D  Y           +R+   Q  C H 
Sbjct: 840  AIYSISENENGE---ELDAEVVQEKVFMMREEDQSYWLGKTNHWTAMVRVSSQQYYCLHQ 896

Query: 1741 WQLNSFVQPQQE-TCICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQF 1917
            W+ N  +       C  CK+ T  R+RI CP C++T+C +C P      V   P  P  F
Sbjct: 897  WEHNKEITVVAHINCHFCKQPTQLRSRIHCPTCKLTSCFMCAPIYCNITVQQQPKPPTPF 956

Query: 1918 FP*NLIHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQTLKRDFEELK---AFKGKE 2088
                L+ +Q  YI W EG+  RL + VE  +KE  + +L + L++D ++L+     +GK+
Sbjct: 957  NTNTLLQQQAAYIQWLEGENQRLTEAVEFYKKEAADLRLEKELEKDRKDLEPKIQDRGKK 1016

Query: 2089 VCGEPDPQEGMS-REHTNILFHQSILKV------SQEGISGPRLVRNMLYNMKIEPEISG 2247
            V    DP+ G S  E    L   ++ ++       Q+ +  P    NMLYN+ +   I  
Sbjct: 1017 V-QILDPEAGPSDDEQIGYLEEDTVSRIIGHTVEEQQEVKKPVKRGNMLYNLDVVLLIPE 1075

Query: 2248 IPR-FPVRAILDTGVTTCCIDERAVPSEALEKNGTLVQFSGIKN 2376
            + R   V+AILDTG TTCCI+  +VP  A+E+N  LVQF GI +
Sbjct: 1076 VGRPIKVKAILDTGATTCCININSVPKTAIEQNTFLVQFRGINS 1119



 Score =  152 bits (384), Expect(3) = e-171
 Identities = 72/104 (69%), Positives = 84/104 (80%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN++A QGFTD  +KME +ENLLGETEKLTW QWRM Y  E+Q +L  A GR+GTQNILS
Sbjct: 563  KNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILS 622

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDIKIYARIY 1067
            Q++RVFSLEDPA GST IQDAAYRDLERL+C N+KDI  +   Y
Sbjct: 623  QIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDY 666



 Score =  110 bits (276), Expect(3) = e-171
 Identities = 93/319 (29%), Positives = 146/319 (45%), Gaps = 65/319 (20%)
 Frame = +2

Query: 2    DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLN-TVRLPTEVQSQNLLNGNIHISFERY 178
            DYLA+ GV+A+ G++ + + ++ + WI+RPPR + T   P  V+++NL++G+I I F  Y
Sbjct: 254  DYLASHGVKAIAGKKMNLQHLRNQQWILRPPRADITPMQPRSVETRNLVDGSISIRFHDY 313

Query: 179  VAAAEPARASTS*VPSNREEGTPEE-GMHYLAAFIEDEPIYD------ISEE-------- 313
             AA   +R   +      E  T  E   H +A +I +E + D      + EE        
Sbjct: 314  EAATSXSRPHYNEEDEEVESETESEIREHTVAVWIGEEEVPDQIGRKKVWEESSNGNGRF 373

Query: 314  ----------DEEALFPAYDSEGELN--------------------YPQRREEEFCNP-- 397
                      DE+ +   + S+ + +                    + Q  EE+  +P  
Sbjct: 374  FRYYTPPPTSDEQIIATGWGSDDDYDDEIPPKWDESPDKEGSSEPIWDQEEEEDEYDPNI 433

Query: 398  ---FAQKEAVIQEDILAVGYEAEIDDLEYPILKKLKEHVYSGTLTSATSPYRPPEDASMG 568
               + QKE    ++I A   + E+ ++EYP  +   E V+S T+      Y PP D  M 
Sbjct: 434  YMAYLQKEEDEWQEI-AASLQEEM-EMEYPRRRPQTETVFSETV-----DYTPPSDTMMT 486

Query: 569  PPSYP---AFRLDETRPHGNIRFRGGINN-----------EMWSLPSA*QNNGAMFVIPE 706
            P  YP   + R   T P     F G + +           E W LPS+    GA+FV+P+
Sbjct: 487  PVGYPPASSSRSTVTTPSRPPLFEGRVTHVPRFLKRDDYTEWWQLPSSQGTTGALFVMPK 546

Query: 707  QLGLFDDAFSGWESITKKF 763
            Q+GLF D FS WESITK +
Sbjct: 547  QMGLFYDVFSRWESITKNY 565


>ref|NP_569153.1| unknown [Citrus yellow mosaic virus]
 gb|AAL18495.1|AF347695_3 unknown [Citrus yellow mosaic virus]
          Length = 1983

 Score =  444 bits (1141), Expect(3) = e-171
 Identities = 231/473 (48%), Positives = 309/473 (65%), Gaps = 21/473 (4%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            ++Y++++MR+ AKTGR+FIG EL EK WLKMPGD+G+RMK+++ +K+PG ++GV PRILF
Sbjct: 796  VQYLNDFMRIAAKTGRMFIGPELSEKLWLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILF 855

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYY---KTEKKYSIRRSQTCKGKPHDTHMR 1395
            AYKYLE ECK+ A++RSLK+LSFCS IPIPGYY     EK+Y +RR+ T KGKPH TH R
Sbjct: 856  AYKYLEGECKDAAFRRSLKNLSFCSSIPIPGYYGGKSGEKRYGVRRTTTYKGKPHSTHAR 915

Query: 1396 IEKRKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGED 1575
            IEK KH LRNKKCKCYLCG+EG+FARECPN++RN+KRVA++E L++PDD EI+SI +G+ 
Sbjct: 916  IEKTKH-LRNKKCKCYLCGEEGHFARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDP 974

Query: 1576 QSDAIFSVSEGEDKEISRTLKVCIQEEY--IYMLGEIDGGYRPQIRLPENQLNCFHTWQL 1749
             SDAIFS+SEGE+           QEE    Y LG+  GGY+  +++ +    C H W+ 
Sbjct: 975  DSDAIFSISEGEEAGTLEEQCFVFQEECNGTYWLGK-RGGYQDLVQISKEIYYCQHEWEE 1033

Query: 1750 NSFV-QPQQETCICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP* 1926
            N  +  P    C  CKR+T  RAR+ C  C +T+C +CGP  F +++ V P   A F   
Sbjct: 1034 NQPINDPAHVRCYPCKRETTQRARLHCKLCHITSCLMCGPTYFNKKITVQPMPQAPFNQK 1093

Query: 1927 NLIHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQTLKRDFEEL-----KAFKGKEV 2091
             L+ +Q  YI WC  +I RLK+EV   ++  QE +L   L++  +EL     +  K K +
Sbjct: 1094 GLLQQQQEYIAWCNNEIARLKEEVAFYKQLAQERELQLQLEQSRKELAGVDSRRRKDKGI 1153

Query: 2092 CGEPDPQEGMSREHTNILFHQSILKVSQEGISGPRLVRNMLYNMKIEPEISGIPRFPVRA 2271
              +         E T I+ H          ++  R V+NMLYNM +  EI GIP F V+A
Sbjct: 1154 VIDEGSCYFNPEETTRIIAH------GDTQVTKTRPVKNMLYNMDVRMEIPGIPAFTVKA 1207

Query: 2272 ILDTGVTTCCIDERAVPSEALEKNGTLVQFSGI----------KNGKMHIGEN 2400
            ILDTG TTCCID R+VP +ALE+N  +V FSGI          K GKM I E+
Sbjct: 1208 ILDTGATTCCIDSRSVPKDALEENSFVVNFSGINSKQQVKQKLKTGKMFINEH 1260



 Score =  137 bits (345), Expect(3) = e-171
 Identities = 64/100 (64%), Positives = 77/100 (77%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            K ++A QG TD +DK E +EN+LG TEK+ WTQWRM Y  E++ ++  A GREGTQNILS
Sbjct: 699  KAYVAQQGITDPRDKAEFIENMLGPTEKIIWTQWRMGYADEYENLVTTADGREGTQNILS 758

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDIKIY 1055
            QMRRVFSLEDP  GST +QD AYRDLERL+C +VK I  Y
Sbjct: 759  QMRRVFSLEDPTTGSTAVQDEAYRDLERLTCDSVKHIVQY 798



 Score = 73.2 bits (178), Expect(3) = e-171
 Identities = 48/133 (36%), Positives = 66/133 (49%), Gaps = 21/133 (15%)
 Frame = +2

Query: 446 YEAEIDDLEYPILKKLKEHVYSG--------TLTSATSPYRPPEDASMGPPSYPAFR--- 592
           +EAE D   YP   +L+ H  SG         L+SA S Y PP D +M P +YP  +   
Sbjct: 578 HEAEFD---YPAFARLQAHEESGRPKPKTEKVLSSAISSYTPPTDTAMTPVAYPPAQNIA 634

Query: 593 LDETRPHGNIRFRGGI----------NNEMWSLPSA*QNNGAMFVIPEQLGLFDDAFSGW 742
                P   +    G           N+   SLPSA QN GA+F++P+Q+GLF + F+ W
Sbjct: 635 SPSYNPSPQMPMFEGYYPKRPNFKRDNHAFISLPSAQQNTGALFIMPQQIGLFHEVFTSW 694

Query: 743 ESITKKFYC*PGI 781
           E+ITK +    GI
Sbjct: 695 EAITKAYVAQQGI 707



 Score = 69.3 bits (168), Expect = 4e-08
 Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
 Frame = +2

Query: 2   DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLNTVRL-PTEVQSQNLLNGNIHISFERY 178
           DYL + G++ALPGRR+   ++QG+ W +RP  +  V + PT V ++N+++G+I + F  Y
Sbjct: 253 DYLVSHGIQALPGRRYSTADIQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRFNSY 312

Query: 179 VAAAEPARASTS*VPSNREEGTPEEG-----MHYLAAFIEDEPIYD 301
             A +P   + +    + EE  P+E       H +A + ED+ ++D
Sbjct: 313 QPAPDPTPVAYN---QHDEEVPPDEDEEQIRNHTIALWREDDEVWD 355


>gb|ASG91874.1| polyprotein [Cacao swollen shoot virus]
          Length = 1846

 Score =  392 bits (1008), Expect(3) = e-170
 Identities = 206/464 (44%), Positives = 292/464 (62%), Gaps = 20/464 (4%)
 Frame = +1

Query: 1045 LKYMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILF 1224
            ++++++Y RL AK+GRLF+G EL EK W+KMP ++G RMKE+F K+Y G  +GV PRILF
Sbjct: 661  VQFLNDYGRLAAKSGRLFLGTELSEKLWMKMPPELGHRMKEAFQKEYSGNEVGVFPRILF 720

Query: 1225 AYKYLEDECKEPAYKRSLKDLSFCSQIPIPGYYKTEKKYSIRRSQTCKGKPHDTHMRIEK 1404
            AY+YLE ECK+ A+KRSLK LSFC  +P+ GYY    KY +R+S+T KGKPH +H R+EK
Sbjct: 721  AYRYLEQECKDAAFKRSLKSLSFCKDMPLTGYYDKTPKYGMRKSKTYKGKPHASHARVEK 780

Query: 1405 RKHLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQSD 1584
            RKHL+RNKKCKCYLCG EG+FARECPN KR++KRVA++E + +P+ F+I+S+ +GED SD
Sbjct: 781  RKHLIRNKKCKCYLCGDEGHFARECPNNKRDVKRVAIFEGINLPEGFDIVSVEEGEDDSD 840

Query: 1585 AIFSVSEGEDKEISRTLKVCIQEEYIYMLGEIDGGY--------RPQIRLPENQLNCFHT 1740
            AI+S+SE E+ E    L   + +E ++M+ E D  Y           +R+   Q  C H 
Sbjct: 841  AIYSISENENGE---ELDAEVVQEKVFMMREEDQSYWLGKTNHWTAMVRVSSQQYYCLHQ 897

Query: 1741 WQLNSFVQPQQE-TCICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQF 1917
            W+ N  +       C  CK+ T  R+RI CP C++T+C +C P      V   P  P  F
Sbjct: 898  WEHNKEITVVAHINCHFCKQPTQLRSRIHCPTCKLTSCFMCAPIYCNITVQQQPKPPTPF 957

Query: 1918 FP*NLIHEQNYYILWCEGKIDRLKKEVEHLRKELQEAKLMQTLKRDFEELK---AFKGKE 2088
                L+ +Q  YI W EG+  RL + VE  +KE  + +L + L++D ++L+     +GK+
Sbjct: 958  NTNTLLQQQAAYIQWLEGENQRLTEAVEFYKKEAADLRLEKELEKDRKDLEPKIQDRGKK 1017

Query: 2089 VCGEPDPQEGMS-REHTNILFHQSILKV------SQEGISGPRLVRNMLYNMKIEPEISG 2247
            V    DP+ G S  E T  L   ++ ++       Q+ +  P    NMLYN+ +   I  
Sbjct: 1018 V-QIFDPEAGPSDDEQTAYLEEDTVSRIIGHTVEEQQEVKKPVKRGNMLYNLDVVLLIPE 1076

Query: 2248 IPR-FPVRAILDTGVTTCCIDERAVPSEALEKNGTLVQFSGIKN 2376
            + R   V+AILDTG TTCCI+  +VP  A+E+N  LVQF GI +
Sbjct: 1077 VGRPIKVKAILDTGATTCCININSVPKTAIEQNTFLVQFRGINS 1120



 Score =  152 bits (384), Expect(3) = e-170
 Identities = 72/104 (69%), Positives = 84/104 (80%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN++A QGFTD  +KME +ENLLGETEKLTW QWRM Y  E+Q +L  A GR+GTQNILS
Sbjct: 564  KNYVAAQGFTDPTEKMEFMENLLGETEKLTWIQWRMNYEAEYQQLLTQADGRQGTQNILS 623

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDIKIYARIY 1067
            Q++RVFSLEDPA GST IQDAAYRDLERL+C N+KDI  +   Y
Sbjct: 624  QIKRVFSLEDPASGSTRIQDAAYRDLERLTCHNIKDIVQFLNDY 667



 Score =  108 bits (271), Expect(3) = e-170
 Identities = 94/320 (29%), Positives = 143/320 (44%), Gaps = 66/320 (20%)
 Frame = +2

Query: 2    DYLANRGVRALPGRRFDGREVQGRNWIVRPPRLN-TVRLPTEVQSQNLLNGNIHISFERY 178
            DYLA+ GV+A+ G+R + + ++ + WI+RPPR + T   P  V+++NL++G+I I F  Y
Sbjct: 254  DYLASHGVKAIAGKRMNLQHLRNQQWILRPPRADITPMQPRSVETRNLVDGSISIRFHDY 313

Query: 179  VAAAEPARASTS*VPSNREEGTPEE-GMHYLAAFIEDEPIYD------ISEE-------- 313
             AA   +R   +      E  T  E   H +A +I +E + D      + EE        
Sbjct: 314  EAATSTSRPHYNEEDEEVESETESEIREHTVAVWIGEEEVPDQTGRKKVWEESSNGNGRF 373

Query: 314  ----------DEEALFPAYDSEGELN--------------------YPQRREEE------ 385
                      DE+ +   + S+ + +                    + Q  EEE      
Sbjct: 374  FRYYTHPLTSDEQIIATGWGSDDDYDDEIPPKWDENPDEEISSEPIWDQEEEEEDEYDPN 433

Query: 386  FCNPFAQKEAVIQEDILAVGYEAEIDDLEYPILKKLKEHVYSGTLTSATSPYRPPEDASM 565
                + QKE    ++I A   + E+ ++EYP  +   E V+S T+      Y PP D  M
Sbjct: 434  IYMAYLQKEEDEWQEI-AASLQEEM-EMEYPRRRPQTETVFSETV-----DYTPPGDTLM 486

Query: 566  GPPSYP---AFRLDETRPHGNIRFRGGINN-----------EMWSLPSA*QNNGAMFVIP 703
             P  YP     R   T P     F G + +           E W LPS+    GA+FV+P
Sbjct: 487  TPVGYPPASTSRSTVTTPSRPPLFEGRVTHVPRFLKRDDYTEWWQLPSSQGTTGALFVMP 546

Query: 704  EQLGLFDDAFSGWESITKKF 763
            +Q+GLF D FS WESITK +
Sbjct: 547  KQMGLFHDVFSRWESITKNY 566


>gb|AIK01820.1| ORF3 [Piper yellow mottle virus]
          Length = 1925

 Score =  422 bits (1086), Expect(3) = e-170
 Identities = 219/493 (44%), Positives = 308/493 (62%), Gaps = 44/493 (8%)
 Frame = +1

Query: 1051 YMHEYMRLVAKTGRLFIGAELFEKFWLKMPGDMGRRMKESFNKKYPGVVIGVVPRILFAY 1230
            ++++Y+RL AKTGR+FIG EL EK W+K+PG++GRR+KE+F+ KY G   GV+PRILF +
Sbjct: 766  FLNDYLRLAAKTGRMFIGTELSEKLWMKLPGNLGRRIKEAFDIKYKGNEAGVIPRILFTH 825

Query: 1231 KYLEDECKEPAYKRSLKDLSFCSQIPIPGYYKTEKKYSIRRSQTCKGKPHDTHMRIEKRK 1410
            KYLED+CKE A++RSLK ++FC+ IPIPGYY  EKK  +RRS T KGKPH +H+RIE+RK
Sbjct: 826  KYLEDQCKEAAFQRSLKGMTFCNSIPIPGYYSKEKKMGVRRSTTYKGKPHSSHVRIEERK 885

Query: 1411 HLLRNKKCKCYLCGQEGYFARECPNEKRNIKRVALYEQLEVPDDFEILSIHDGEDQSDAI 1590
            HLLRNK CKCYLCG+EG+FA++C   KR+I+RVA++E LE+P+D +++S+ +GE+ SDAI
Sbjct: 886  HLLRNKNCKCYLCGEEGHFAKDCNRNKRDIRRVAIFEGLELPEDHDVVSVSEGEEDSDAI 945

Query: 1591 FSVSEGEDKEISRT---LKVCIQEEYIYMLGEIDGGYRPQIRLPENQLNCFHTWQLNSFV 1761
            +SVSEGED  I+     + V  +E+  Y +G+  G ++P I++ +   +C H W  N+ V
Sbjct: 946  YSVSEGEDGSIATVTHYINVFFEEDRTYWVGKA-GSWQPMIKVTQKVHDCQHCWMENTDV 1004

Query: 1762 QPQQET-CICCKRKTLTRARIRCPKCQVTACNLCGPYCFKEEVPVAPTAPAQFFP*NLIH 1938
                   C+CCKR +    RI CP C+VT+C LC  +CF + + V     A + P NL+ 
Sbjct: 1005 PNDGPIQCLCCKRNSQKNFRIHCPICKVTSCGLCSNFCFDKSIQVKKEYVAPYNPRNLLE 1064

Query: 1939 EQNYYILWCEGKIDRLKKEVEH---LRKELQEAKLM-QTLKRDFEELKAFKGKEVCGEPD 2106
            EQ  YI WCE ++ RLK+ + H   LR E    +L  Q LKR   +L+  +  +   E  
Sbjct: 1065 EQQRYIEWCELEMKRLKESISHDNELRMENDRLQLENQDLKRQIAKLQEKQKMKALMEDL 1124

Query: 2107 PQEGMSREHTNILFHQSILK--------------------------VSQEGISGPRLVRN 2208
             +E  S E  N+L  +   K                          +S+EG     + ++
Sbjct: 1125 GEEYYSEEEVNVLVEEWDNKRVTKELDDLEAELNKVGVIIPEEKVCISKEGEKIKPISKS 1184

Query: 2209 MLYNMKIEPEISGIPRFPVRAILDTGVTTCCIDERAVPSEALEKNGTLVQFSGI------ 2370
            ML   +++ EI  +P F V AILDTG TTCC+DER +P EALE N  LV F GI      
Sbjct: 1185 MLIKFQVKLEIPDVPEFTVNAILDTGATTCCVDERVIPQEALEANPYLVHFRGINSKTTA 1244

Query: 2371 ----KNGKMHIGE 2397
                K G+M IG+
Sbjct: 1245 NKKLKYGRMIIGD 1257



 Score =  136 bits (343), Expect(3) = e-170
 Identities = 63/104 (60%), Positives = 82/104 (78%)
 Frame = +3

Query: 756  KNFIANQGFTDVQDKMECLENLLGETEKLTWTQWRMQYGKEFQAILAAASGREGTQNILS 935
            KN +A QGFTD  DK+  +ENLLGE EKLTW QWR  Y +E+Q ++ +A GR GT+NILS
Sbjct: 667  KNLVAAQGFTDPADKVGFIENLLGEAEKLTWIQWRSTYQEEYQQMMNSADGRAGTENILS 726

Query: 936  QMRRVFSLEDPAQGSTEIQDAAYRDLERLSCSNVKDIKIYARIY 1067
            Q+RR+F+LEDPA GST++QD AYRDLE+L+CSN+KD+  +   Y
Sbjct: 727  QVRRIFALEDPATGSTKMQDEAYRDLEQLTCSNLKDLVPFLNDY 770



 Score = 94.4 bits (233), Expect(3) = e-170
 Identities = 66/180 (36%), Positives = 86/180 (47%), Gaps = 14/180 (7%)
 Frame = +2

Query: 260 HYLAAFIEDEPIYDISEEDEEALFPAYDSEGELNYPQRREEEFCNPFAQKEAVIQEDILA 439
           H LAA   + P++D SEE+EE             Y    EEE                  
Sbjct: 525 HDLAAINTEGPVWDNSEEEEEG------------YAAEEEEE------------------ 554

Query: 440 VGYEAEIDDLEYPILKKLK---EHVYSGTLTSATSPYRPPEDASMGPPSYPAF-----RL 595
                E+DD+EYP ++ L+   + V+S    S  S YRPP+D +MGP SYP         
Sbjct: 555 -----EVDDMEYPHVRALRLKMQEVFSAQ--SEISQYRPPQDTAMGPSSYPPAVNITNEA 607

Query: 596 DETRP------HGNIRFRGGINNEMWSLPSA*QNNGAMFVIPEQLGLFDDAFSGWESITK 757
             +RP         +RF+     + W+LPSA Q  GA+FVIP QLGLFD  F+ WESITK
Sbjct: 608 GPSRPMFEGYNKSGVRFKHKDLADNWTLPSAQQQQGAVFVIPTQLGLFDSVFARWESITK 667