BLASTX nr result
ID: Cheilocostus21_contig00048718
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00048718
(518 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|PKU61844.1| RNA-directed DNA polymerase [Dendrobium catenatum] 115 6e-31
gb|ABA99372.1| retrotransposon protein, putative, Ty3-gypsy subc... 125 3e-30
emb|CAE03089.2| OSJNBa0017B10.4 [Oryza sativa Japonica Group] 122 6e-30
emb|CAE02744.2| OSJNBa0006B20.7 [Oryza sativa Japonica Group] >g... 123 2e-29
gb|ABA99914.1| retrotransposon protein, putative, Ty3-gypsy subc... 122 4e-29
tpd|FAA01205.1| TPA: orf y [Oryza sativa Japonica Group] 122 4e-29
tpd|FAA01208.1| TPA: orf y [Oryza sativa Japonica Group] 122 4e-29
tpd|FAA00012.1| TPA: hypothetical protein [Rice tungro bacillifo... 122 4e-29
tpd|FAA00009.1| TPA: hypothetical protein [Rice tungro bacillifo... 122 4e-29
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus] 108 5e-29
gb|ACH86211.1| unknown [Citrus yellow mosaic virus] 108 5e-29
gb|ABG66247.1| retrotransposon protein, putative, Ty3-gypsy subc... 122 5e-29
gb|ABA96037.1| retrotransposon protein, putative, Ty3-gypsy subc... 122 5e-29
tpd|FAA01202.1| TPA: orf y [Oryza sativa Japonica Group] 122 5e-29
tpd|FAA01199.1| TPA: orf y [Oryza sativa Japonica Group] 122 5e-29
gb|AAP53741.2| transposon protein, putative, CACTA, En/Spm sub-c... 122 6e-29
gb|ATV81254.1| polyprotein [Grapevine badnavirus 1] 102 8e-29
tpd|FAA00006.1| TPA: hypothetical protein [Rice tungro bacillifo... 121 1e-28
gb|AAU10730.1| putative polyprotein [Oryza sativa Japonica Group] 120 2e-28
ref|NP_569153.1| unknown [Citrus yellow mosaic virus] >gi|164169... 107 4e-28
>gb|PKU61844.1| RNA-directed DNA polymerase [Dendrobium catenatum]
Length = 531
Score = 115 bits (288), Expect(2) = 6e-31
Identities = 54/116 (46%), Positives = 76/116 (65%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y +P +IN I +++SKFD KS F QV MH NSIPWTAF+ P G +EWLV+PFGLK
Sbjct: 342 YSLPGINTIINKIGNCSVYSKFDLKSGFHQVAMHPNSIPWTAFLVPNGLYEWLVMPFGLK 401
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIV 349
A+F ++ + +N A YID+IL+ SKN EH HL+++L+ NG+++
Sbjct: 402 NAPAVFQRRMDYCFKGTENFIAVYIDDILVFSKNNQEHAEHLKIMLKICKDNGLVL 457
Score = 46.6 bits (109), Expect(2) = 6e-31
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Frame = +3
Query: 339 GLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNFE---VKDTKTLQQLLGLVN 509
GL+ + I FLG IGN +I+LQ HI I F+ + +TK L+ LGL+N
Sbjct: 454 GLVLSPTKMKIGVSTIDFLGATIGNNKIQLQEHIIEKISEFQEDSLSETKNLRSWLGLLN 513
Query: 510 YA 515
YA
Sbjct: 514 YA 515
>gb|ABA99372.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1098
Score = 125 bits (315), Expect = 3e-30
Identities = 64/131 (48%), Positives = 83/131 (63%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 586 YNIPNKQEWINRIQGSKYFSKFDLKTGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 645
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
A+F +K N + YID++LI SK +H +HL+L +K NG+I+ K
Sbjct: 646 NAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKDHIAHLELFFRKVEQNGLILSKKK 705
Query: 362 SEFYKKKYPIL 394
E YK+K L
Sbjct: 706 MEIYKEKVNFL 716
Score = 56.6 bits (135), Expect = 4e-06
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 312 LFYKNFISMGLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF--EVKDTKTL 485
LF++ GL+ + + K+ + FLG +IG G+I LQ HI I F + D K L
Sbjct: 689 LFFRKVEQNGLILSKKKMEIYKEKVNFLGHEIGEGKIHLQEHIAKKILQFPDAMNDKKKL 748
Query: 486 QQLLGLVNYA 515
QQ LGLVNYA
Sbjct: 749 QQFLGLVNYA 758
>emb|CAE03089.2| OSJNBa0017B10.4 [Oryza sativa Japonica Group]
Length = 429
Score = 122 bits (307), Expect = 6e-30
Identities = 62/131 (47%), Positives = 82/131 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 141 YNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 200
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
AIF +K N + YID++L+ S+ EH +HL++ +K NG+I+ K
Sbjct: 201 NAPAIFQRKIQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFFRKVEQNGLILSKKK 260
Query: 362 SEFYKKKYPIL 394
E K+K L
Sbjct: 261 MEICKEKINFL 271
Score = 56.2 bits (134), Expect = 5e-06
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 312 LFYKNFISMGLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF--EVKDTKTL 485
+F++ GL+ + + K+ I FLG +IG G+I LQ HI I F + D K L
Sbjct: 244 IFFRKVEQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIAKKILQFPDAMNDKKKL 303
Query: 486 QQLLGLVNYA 515
QQ LGLVNYA
Sbjct: 304 QQFLGLVNYA 313
>emb|CAE02744.2| OSJNBa0006B20.7 [Oryza sativa Japonica Group]
emb|CAH67571.1| H0315A08.1 [Oryza sativa]
Length = 685
Score = 123 bits (309), Expect = 2e-29
Identities = 62/131 (47%), Positives = 83/131 (63%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 252 YNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 311
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
AIF +K N + YID++L+ S+ EH +HL++ ++K NG+I+ K
Sbjct: 312 NAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFIRKVEQNGLILSKKK 371
Query: 362 SEFYKKKYPIL 394
E K+K L
Sbjct: 372 MEICKEKINFL 382
>gb|ABA99914.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 730
Score = 122 bits (307), Expect = 4e-29
Identities = 62/131 (47%), Positives = 82/131 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 190 YNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 249
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
AIF +K N + YID++L+ S+ EH +HL++ +K NG+I+ K
Sbjct: 250 NAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFFRKVEQNGLILSKKK 309
Query: 362 SEFYKKKYPIL 394
E K+K L
Sbjct: 310 MEICKEKINFL 320
Score = 56.2 bits (134), Expect = 5e-06
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 312 LFYKNFISMGLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF--EVKDTKTL 485
+F++ GL+ + + K+ I FLG +IG G+I LQ HI I F + D K L
Sbjct: 293 IFFRKVEQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIAKKILQFPDAMNDKKKL 352
Query: 486 QQLLGLVNYA 515
QQ LGLVNYA
Sbjct: 353 QQFLGLVNYA 362
>tpd|FAA01205.1| TPA: orf y [Oryza sativa Japonica Group]
Length = 1718
Score = 122 bits (307), Expect = 4e-29
Identities = 62/131 (47%), Positives = 82/131 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 1357 YNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 1416
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
AIF +K N + YID++L+ S+ EH +HL++ +K NG+I+ K
Sbjct: 1417 NAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFFRKVEQNGLILSKKK 1476
Query: 362 SEFYKKKYPIL 394
E K+K L
Sbjct: 1477 MEICKEKINFL 1487
Score = 56.2 bits (134), Expect = 6e-06
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 312 LFYKNFISMGLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF--EVKDTKTL 485
+F++ GL+ + + K+ I FLG +IG G+I LQ HI I F + D K L
Sbjct: 1460 IFFRKVEQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIAKKILQFPDAMNDKKKL 1519
Query: 486 QQLLGLVNYA 515
QQ LGLVNYA
Sbjct: 1520 QQFLGLVNYA 1529
>tpd|FAA01208.1| TPA: orf y [Oryza sativa Japonica Group]
Length = 1718
Score = 122 bits (307), Expect = 4e-29
Identities = 62/131 (47%), Positives = 82/131 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 1357 YNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 1416
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
AIF +K N + YID++L+ S+ EH +HL++ +K NG+I+ K
Sbjct: 1417 NAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFFRKVEQNGLILSKKK 1476
Query: 362 SEFYKKKYPIL 394
E K+K L
Sbjct: 1477 MEICKEKINFL 1487
Score = 56.2 bits (134), Expect = 6e-06
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 312 LFYKNFISMGLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF--EVKDTKTL 485
+F++ GL+ + + K+ I FLG +IG G+I LQ HI I F + D K L
Sbjct: 1460 IFFRKVEQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIAKKILEFPDAMNDKKKL 1519
Query: 486 QQLLGLVNYA 515
QQ LGLVNYA
Sbjct: 1520 QQFLGLVNYA 1529
>tpd|FAA00012.1| TPA: hypothetical protein [Rice tungro bacilliform virus]
Length = 1718
Score = 122 bits (307), Expect = 4e-29
Identities = 62/131 (47%), Positives = 82/131 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 1357 YNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 1416
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
AIF +K N + YID++L+ S+ EH +HL++ +K NG+I+ K
Sbjct: 1417 NAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFFRKVEQNGLILSKKK 1476
Query: 362 SEFYKKKYPIL 394
E K+K L
Sbjct: 1477 MEICKEKINFL 1487
Score = 56.2 bits (134), Expect = 6e-06
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 312 LFYKNFISMGLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF--EVKDTKTL 485
+F++ GL+ + + K+ I FLG +IG G+I LQ HI I F + D K L
Sbjct: 1460 IFFRKVEQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIAKKILEFPDAMNDKKKL 1519
Query: 486 QQLLGLVNYA 515
QQ LGLVNYA
Sbjct: 1520 QQFLGLVNYA 1529
>tpd|FAA00009.1| TPA: hypothetical protein [Rice tungro bacilliform virus]
Length = 1718
Score = 122 bits (307), Expect = 4e-29
Identities = 62/131 (47%), Positives = 82/131 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 1357 YNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 1416
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
AIF +K N + YID++L+ S+ EH +HL++ +K NG+I+ K
Sbjct: 1417 NAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFFRKVEQNGLILSKKK 1476
Query: 362 SEFYKKKYPIL 394
E K+K L
Sbjct: 1477 MEICKEKINFL 1487
Score = 56.2 bits (134), Expect = 6e-06
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 312 LFYKNFISMGLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF--EVKDTKTL 485
+F++ GL+ + + K+ I FLG +IG G+I LQ HI I F + D K L
Sbjct: 1460 IFFRKVEQNGLILSKKKMEICKEKINFLGHEIGEGKIHLQEHIAKKILQFPDAMNDKKKL 1519
Query: 486 QQLLGLVNYA 515
QQ LGLVNYA
Sbjct: 1520 QQFLGLVNYA 1529
>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
Length = 1968
Score = 108 bits (270), Expect(2) = 5e-29
Identities = 54/116 (46%), Positives = 73/116 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y +P ++ ++GSTIFSKFD KS F QV MH +S+ WTAF P G +EWLV+PFGLK
Sbjct: 1460 YSLPGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSVEWTAFWVPSGLYEWLVMPFGLK 1519
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIV 349
A+F +K + A YID+IL+ SK + EH HLQ++L NG+I+
Sbjct: 1520 NAPAVFQRKMDHCFKGTEAFIAVYIDDILVFSKTEKEHEEHLQIMLSICQRNGLIL 1575
Score = 47.0 bits (110), Expect(2) = 5e-29
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +3
Query: 339 GLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF---EVKDTKTLQQLLGLVN 509
GL+ + + I+FLG I NG IKLQPHI + F ++++ K L+ LGL+N
Sbjct: 1572 GLILSPTKMKIAQAEIEFLGAIIHNGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLN 1631
Query: 510 YA 515
YA
Sbjct: 1632 YA 1633
>gb|ACH86211.1| unknown [Citrus yellow mosaic virus]
Length = 1490
Score = 108 bits (270), Expect(2) = 5e-29
Identities = 54/116 (46%), Positives = 73/116 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y +P ++ ++GSTIFSKFD KS F QV MH +S+ WTAF P G +EWLV+PFGLK
Sbjct: 982 YSLPGIQTILQRLKGSTIFSKFDLKSGFQQVAMHPDSVEWTAFWVPSGLYEWLVMPFGLK 1041
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIV 349
A+F +K + A YID+IL+ SK + EH HLQ++L NG+I+
Sbjct: 1042 NAPAVFQRKMDHCFKGTEAFIAVYIDDILVFSKTEKEHEEHLQIMLSICQRNGLIL 1097
Score = 47.0 bits (110), Expect(2) = 5e-29
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +3
Query: 339 GLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF---EVKDTKTLQQLLGLVN 509
GL+ + + I+FLG I NG IKLQPHI + F ++++ K L+ LGL+N
Sbjct: 1094 GLILSPTKMKIAQAEIEFLGAIIHNGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLN 1153
Query: 510 YA 515
YA
Sbjct: 1154 YA 1155
>gb|ABG66247.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 764
Score = 122 bits (306), Expect = 5e-29
Identities = 63/131 (48%), Positives = 82/131 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 252 YNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 311
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
A+F +K N + YID++LI SK +H +HL+L +K NG+I+ K
Sbjct: 312 NAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKDHIAHLELFFRKVEQNGLILSKKK 371
Query: 362 SEFYKKKYPIL 394
E K+K L
Sbjct: 372 MEICKEKVNFL 382
Score = 56.6 bits (135), Expect = 4e-06
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 312 LFYKNFISMGLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF--EVKDTKTL 485
LF++ GL+ + + K+ + FLG +IG G+I LQ HI I F + D K L
Sbjct: 355 LFFRKVEQNGLILSKKKMEICKEKVNFLGHEIGEGKIHLQEHIAKKILQFPDAMNDKKKL 414
Query: 486 QQLLGLVNYA 515
QQ LGLVNYA
Sbjct: 415 QQFLGLVNYA 424
>gb|ABA96037.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 792
Score = 122 bits (306), Expect = 5e-29
Identities = 63/131 (48%), Positives = 82/131 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 252 YNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 311
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
A+F +K N + YID++LI SK +H +HL+L +K NG+I+ K
Sbjct: 312 NAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKDHIAHLELFFRKVEQNGLILSKKK 371
Query: 362 SEFYKKKYPIL 394
E K+K L
Sbjct: 372 MEICKEKVNFL 382
Score = 56.6 bits (135), Expect = 4e-06
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 312 LFYKNFISMGLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF--EVKDTKTL 485
LF++ GL+ + + K+ + FLG +IG G+I LQ HI I F + D K L
Sbjct: 355 LFFRKVEQNGLILSKKKMEICKEKVNFLGHEIGEGKIHLQEHIAKKILQFPDAMNDKKKL 414
Query: 486 QQLLGLVNYA 515
QQ LGLVNYA
Sbjct: 415 QQFLGLVNYA 424
>tpd|FAA01202.1| TPA: orf y [Oryza sativa Japonica Group]
Length = 1711
Score = 122 bits (306), Expect = 5e-29
Identities = 63/131 (48%), Positives = 82/131 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 1350 YNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 1409
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
A+F +K N + YID++LI SK +H +HL+L +K NG+I+ K
Sbjct: 1410 NAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKDHIAHLELFFRKVEQNGLILSKKK 1469
Query: 362 SEFYKKKYPIL 394
E K+K L
Sbjct: 1470 MEICKEKVNFL 1480
Score = 56.6 bits (135), Expect = 4e-06
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 312 LFYKNFISMGLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF--EVKDTKTL 485
LF++ GL+ + + K+ + FLG +IG G+I LQ HI I F + D K L
Sbjct: 1453 LFFRKVEQNGLILSKKKMEICKEKVNFLGHEIGEGKIHLQEHIAKKILQFPDAMNDKKKL 1512
Query: 486 QQLLGLVNYA 515
QQ LGLVNYA
Sbjct: 1513 QQFLGLVNYA 1522
>tpd|FAA01199.1| TPA: orf y [Oryza sativa Japonica Group]
Length = 1711
Score = 122 bits (306), Expect = 5e-29
Identities = 63/131 (48%), Positives = 82/131 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 1350 YNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 1409
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
A+F +K N + YID++LI SK +H +HL+L +K NG+I+ K
Sbjct: 1410 NAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKDHIAHLELFFRKVEQNGLILSKKK 1469
Query: 362 SEFYKKKYPIL 394
E K+K L
Sbjct: 1470 MEICKEKVNFL 1480
Score = 56.6 bits (135), Expect = 4e-06
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 312 LFYKNFISMGLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF--EVKDTKTL 485
LF++ GL+ + + K+ + FLG +IG G+I LQ HI I F + D K L
Sbjct: 1453 LFFRKVEQNGLILSKKKMEICKEKVNFLGHEIGEGKIHLQEHIAKKILQFPDAMNDKKKL 1512
Query: 486 QQLLGLVNYA 515
QQ LGLVNYA
Sbjct: 1513 QQFLGLVNYA 1522
>gb|AAP53741.2| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
Japonica Group]
Length = 2828
Score = 122 bits (306), Expect = 6e-29
Identities = 63/131 (48%), Positives = 82/131 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 2316 YNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 2375
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
A+F +K N + YID++LI SK +H +HL+L +K NG+I+ K
Sbjct: 2376 NAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKDHIAHLELFFRKVEQNGLILSKKK 2435
Query: 362 SEFYKKKYPIL 394
E K+K L
Sbjct: 2436 MEICKEKVNFL 2446
Score = 56.6 bits (135), Expect = 4e-06
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 312 LFYKNFISMGLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF--EVKDTKTL 485
LF++ GL+ + + K+ + FLG +IG G+I LQ HI I F + D K L
Sbjct: 2419 LFFRKVEQNGLILSKKKMEICKEKVNFLGHEIGEGKIHLQEHIAKKILQFPDAMNDKKKL 2478
Query: 486 QQLLGLVNYA 515
QQ LGLVNYA
Sbjct: 2479 QQFLGLVNYA 2488
>gb|ATV81254.1| polyprotein [Grapevine badnavirus 1]
Length = 1846
Score = 102 bits (255), Expect(2) = 8e-29
Identities = 50/116 (43%), Positives = 74/116 (63%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y +P + ++ + S I+SKFD KS F QV MH +SI WTAF P G +EWLV+PFGLK
Sbjct: 1346 YSLPGISTIMKKVGNSRIYSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMPFGLK 1405
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIV 349
A+F +K ++ A YID+IL+ S+N+ +H HL+++LQ NG+++
Sbjct: 1406 NAPAVFQRKMDHCFKGTEDFIAVYIDDILVFSENEQDHARHLKIMLQICKENGLVL 1461
Score = 52.0 bits (123), Expect(2) = 8e-29
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Frame = +3
Query: 339 GLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF---EVKDTKTLQQLLGLVN 509
GL+ + + I+FLG IGN +I+LQPHI + I +F E+K+ K L+ LGL+N
Sbjct: 1458 GLVLSPTKMKIAVQEIEFLGAVIGNRKIRLQPHIISKIASFKDEELKERKGLRSWLGLLN 1517
Query: 510 YA 515
YA
Sbjct: 1518 YA 1519
>tpd|FAA00006.1| TPA: hypothetical protein [Rice tungro bacilliform virus]
Length = 1711
Score = 121 bits (303), Expect = 1e-28
Identities = 63/131 (48%), Positives = 81/131 (61%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 1350 YNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 1409
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
A+F +K N + YID++LI SK H +HL+L +K NG+I+ K
Sbjct: 1410 NAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKXHIAHLELFFRKVEQNGLILSKKK 1469
Query: 362 SEFYKKKYPIL 394
E K+K L
Sbjct: 1470 MEICKEKVNFL 1480
Score = 56.6 bits (135), Expect = 4e-06
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 312 LFYKNFISMGLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF--EVKDTKTL 485
LF++ GL+ + + K+ + FLG +IG G+I LQ HI I F + D K L
Sbjct: 1453 LFFRKVEQNGLILSKKKMEICKEKVNFLGHEIGEGKIHLQEHIAKKILQFPDAMNDKKKL 1512
Query: 486 QQLLGLVNYA 515
QQ LGLVNYA
Sbjct: 1513 QQFLGLVNYA 1522
>gb|AAU10730.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1326
Score = 120 bits (302), Expect = 2e-28
Identities = 61/131 (46%), Positives = 82/131 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y+IP+K E IN IQGS FSKFD K+ FWQV+M + SI WTAF CP G +EWLV+P GLK
Sbjct: 932 YNIPNKQEWINRIQGSKYFSKFDLKTGFWQVKMAEESIEWTAFTCPQGHYEWLVMPLGLK 991
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIVCG*K 361
AIF +K N + YI+++L+ S+ EH +HL++ +K NG+I+ K
Sbjct: 992 NAPAIFQRKMQNIFNENQEFILVYINDLLVFSRTYKEHIAHLEIFFRKVEQNGLILSKKK 1051
Query: 362 SEFYKKKYPIL 394
E K+K L
Sbjct: 1052 MEICKEKINFL 1062
>ref|NP_569153.1| unknown [Citrus yellow mosaic virus]
gb|AAL18495.1|AF347695_3 unknown [Citrus yellow mosaic virus]
Length = 1983
Score = 107 bits (268), Expect(2) = 4e-28
Identities = 55/116 (47%), Positives = 73/116 (62%)
Frame = +2
Query: 2 YDIPDKTELINSIQGSTIFSKFDCKSDFWQVRMHKNSIPWTAFICPLGSFEWLVLPFGLK 181
Y +P ++ ++GSTIFSKFD KS F QV MH +SI WTAF P G +EWLV+PFGLK
Sbjct: 1475 YSLPGIQTILQRLKGSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVPSGLYEWLVMPFGLK 1534
Query: 182 ITQAIF*KK*IWYLNLIKNLFAFYIDNILIHSKNKNEHTSHLQLVLQKFYINGIIV 349
AIF +K + A YID+IL+ SK + +H HLQ++L NG+I+
Sbjct: 1535 NAPAIFQRKMDHCFKGTEAFIAVYIDDILVFSKTEQDHEKHLQIMLAICQKNGLIL 1590
Score = 44.7 bits (104), Expect(2) = 4e-28
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +3
Query: 339 GLLFVDRNLNFIKKNIQFLGVQIGNGEIKLQPHIFTNIKNF---EVKDTKTLQQLLGLVN 509
GL+ + + I+FLG I G IKLQPHI + F ++++ K L+ LGL+N
Sbjct: 1587 GLILSPTKMKIAQAEIEFLGAIIHKGLIKLQPHIVQKLLTFTNKQLEEVKGLRSWLGLLN 1646
Query: 510 YA 515
YA
Sbjct: 1647 YA 1648