BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00048355
         (2354 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposo...   140   7e-81
gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinen...   136   4e-68
gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposo...   125   6e-53
gb|OMO99089.1| Integrase, catalytic core [Corchorus capsularis]       178   1e-52
gb|OMO51796.1| Reverse transcriptase, RNA-dependent DNA polymera...   167   1e-51
gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposo...   118   8e-49
gb|KYP76810.1| Retrovirus-related Pol polyprotein from transposo...   118   8e-49
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         123   2e-47
gb|OMO59210.1| Integrase, catalytic core [Corchorus capsularis]       130   3e-45
dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           114   1e-44
emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]   112   2e-43
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...    96   1e-40
gb|KYP64759.1| Retrovirus-related Pol polyprotein from transposo...   118   3e-40
gb|KYP60296.1| Retrovirus-related Pol polyprotein from transposo...   107   5e-40
gb|KYP73265.1| Retrovirus-related Pol polyprotein from transposo...   108   2e-39
gb|KYP60452.1| Retrovirus-related Pol polyprotein from transposo...   115   2e-37
gb|AAK29467.1| polyprotein-like [Solanum chilense]                     81   5e-37
gb|KYP53808.1| Retrovirus-related Pol polyprotein from transposo...    86   1e-36
gb|KYP53895.1| Retrovirus-related Pol polyprotein from transposo...   110   2e-36
gb|PNX69237.1| hypothetical protein L195_g056606, partial [Trifo...   146   3e-36

>gb|KYP66486.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1321

 Score =  140 bits (352), Expect(4) = 7e-81
 Identities = 93/260 (35%), Positives = 132/260 (50%), Gaps = 17/260 (6%)
 Frame = +2

Query: 983  SKSRDPMKCYYSGKVIHIKMYCRILKQERKTSKNKKDFVQNNMTAVTYEKVIVSLIHGHG 1162
            SKSR+   CY  GK  H+K  CR LK+E +      D  +N     +     ++L+   G
Sbjct: 218  SKSRERRSCYNCGKPGHLKKNCRFLKKEIQDKNQAND--RNTAATTSASDDEITLLCNQG 275

Query: 1163 DYNHVRDPSIE*IINRGATYHCVSKRKLFTTYKV----DTKMENQNVSHIVGICDIIIET 1330
            +  H+ +P  E II+  A+YHCV KR+ FTTY+        M N++ S IVGI DI ++T
Sbjct: 276  ECCHIAEPDEEWIIDSAASYHCVPKREYFTTYRKGDFGHVNMGNKSTSQIVGIGDIHLQT 335

Query: 1331 NIWCTLTLRHMRHIPNFCL-------------QCP**GRI**PIQG*IVEAP*RVCSSCK 1471
             + CTL L+ +RHIP+  L             +    G      +G +V A  ++C +  
Sbjct: 336  GVGCTLILKDVRHIPDIRLNLISVNVLDKEGYEHSMKGGRWKLTKGSLVVAKGKLCCTLY 395

Query: 1472 GIIILHNV*DLAKAF*NHINIVQDDASPNLWHNTLTHMSEKEQQLLARQSHIHIPLAKGK 1651
               +        K     +N V++DASPNLWH  L H+SEK  QLLA+QS I     + K
Sbjct: 396  KTYV--------KVCKGQLNAVENDASPNLWHRRLAHISEKGLQLLAKQSLI----PQAK 443

Query: 1652 GMTISSCDYCSLSKHISVSF 1711
            G  ++ CDYC   KH  VSF
Sbjct: 444  GDFLNPCDYCVFGKHHRVSF 463



 Score =  127 bits (318), Expect(4) = 7e-81
 Identities = 61/139 (43%), Positives = 93/139 (66%), Gaps = 3/139 (2%)
 Frame = +3

Query: 540 FHHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSD---LLNQ 710
           ++ V++ET+  V W KL ++YE K A +K+F +RKL NLK  + R++ +HL+D   L+ Q
Sbjct: 71  YNQVSKETDPQVLWKKLESMYETKNAQSKIFMMRKLMNLKLQEGRAVAEHLNDFEGLVMQ 130

Query: 711 LTTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRISI 890
           L +  + L+D++  L LLGSLPD+WDTLV+++ NS P GKV++ MV++  LNEE RR  +
Sbjct: 131 LISAGLTLEDEMQALLLLGSLPDSWDTLVVSLSNSAPEGKVSLNMVRNSILNEEIRRRDV 190

Query: 891 NLRSDQALAMENKGRFKNR 947
                 AL  E + R K+R
Sbjct: 191 AKNETHALVTERRSRSKSR 209



 Score = 64.3 bits (155), Expect(4) = 7e-81
 Identities = 31/38 (81%), Positives = 33/38 (86%)
 Frame = +1

Query: 1723 RKITKLELMHYVVCGPMEVESLGGNKYFVTFINDASGK 1836
            RK  KLEL+H  VCGPMEVESLGGNKYFVTFI+DAS K
Sbjct: 469  RKKNKLELVHSDVCGPMEVESLGGNKYFVTFIDDASRK 506



 Score = 43.5 bits (101), Expect(4) = 7e-81
 Identities = 22/50 (44%), Positives = 32/50 (64%)
 Frame = +1

Query: 394 MEDHLYYSDLFDHILGDSAKPKDMSKDE*TRLDRKALGTIRK*GDISFFS 543
           MED L   DL+D I GD +KP+ MS  +  +L +K L TIR+  DI+ ++
Sbjct: 23  MEDRLNLLDLYDPIEGDGSKPEKMSDGDWKKLKKKTLSTIRQWVDITLYN 72



 Score =  102 bits (254), Expect(2) = 2e-24
 Identities = 52/82 (63%), Positives = 63/82 (76%)
 Frame = +3

Query: 1923 IFRYLQGTSKLCLGFRRSQAFLYGFTYSDMT*DIDSRKSTSKYLFTFIGGAMSLQSKLQK 2102
            I RYL+GTSKLCL F  ++  L G+T +DM  D+D RKSTS Y+FTF GGA+S QSKLQK
Sbjct: 1148 ILRYLRGTSKLCLRFGGAKPILEGYTDADMAGDLDDRKSTSGYIFTFSGGAISWQSKLQK 1207

Query: 2103 CAALSTTEAEYIDATKASIEKL 2168
            C +LSTTEAEY+ AT+A  E L
Sbjct: 1208 CISLSTTEAEYVAATEAGKEML 1229



 Score = 41.2 bits (95), Expect(2) = 2e-24
 Identities = 18/27 (66%), Positives = 21/27 (77%)
 Frame = +2

Query: 1844 VYTRPYIAHVVGLVSRFLLCPDKTHWD 1924
            V TRP IAH VG+VSR+L  P KTHW+
Sbjct: 1117 VCTRPDIAHAVGVVSRYLSNPGKTHWE 1143


>gb|PRQ60431.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 1340

 Score =  136 bits (343), Expect(4) = 4e-68
 Identities = 68/151 (45%), Positives = 97/151 (64%), Gaps = 3/151 (1%)
 Frame = +3

Query: 540 FHHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSDL---LNQ 710
           FHHV+ ETN+   W KL +L+E+KTA  K F I++L N+KY D   + +HL++    +NQ
Sbjct: 71  FHHVSNETNARELWLKLTSLFEKKTAAKKAFLIKELVNMKYKDGVRVTEHLNNFQSTINQ 130

Query: 711 LTTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRISI 890
           L TM + +DD++  L LLGSLPD W+T V+TV NS P+G ++M  VK+  LNEE RR S 
Sbjct: 131 LATMDMKIDDELQALLLLGSLPDNWETFVVTVSNSAPDGVLSMDNVKNNMLNEETRRKSS 190

Query: 891 NLRSDQALAMENKGRFKNRVQDSRG*SKSNN 983
           +  + Q    E++GR K+R     G S S +
Sbjct: 191 SSDNSQVFVTEHRGRSKSRGPKGHGRSMSRS 221



 Score = 95.5 bits (236), Expect(4) = 4e-68
 Identities = 80/259 (30%), Positives = 125/259 (48%), Gaps = 16/259 (6%)
 Frame = +2

Query: 983  SKSRDPMKCYYSGKVIHIKMYCRILKQERKTSKN-----KKDFVQNNMTAVTYEKVIVSL 1147
            S++R   KC++ G   H+K  C  LK++ K  ++       D  +N   +V++++     
Sbjct: 221  SRTRFNGKCHHCGIFGHMKKNCNKLKKDPKEGRDGNTHQPNDDTRNTAASVSHDECEFLC 280

Query: 1148 IHGHGDYNHVRD-PSIE*IINRGATYHCVSKRKLFTTYKVD----TKMENQNVSHIVGIC 1312
            + G  +  HV D  S+  +++ GA++H     + FTTY+       KM N   S I GI 
Sbjct: 281  LEG--ECLHVDDCSSVAWVVDSGASFHATPHLEYFTTYQGGDFGRVKMGNDGYSKISGIG 338

Query: 1313 DIIIETNIWCTLTLRHMRHIPNFCLQCP**GRI**PIQG*IVEAP*RVCSSCKGIIILHN 1492
            DI  ET++   L L+ +R++P   L     G +    QG       +     KG +++  
Sbjct: 339  DICFETDLGNKLMLKDVRYVPGLRLNLMSTGVL--DRQGFHHHGGDQKWRLTKGSLVIAR 396

Query: 1493 V*DLAKAF*NHINI------VQDDASPNLWHNTLTHMSEKEQQLLARQSHIHIPLAKGKG 1654
                   +  +  I      V DD+SP+LWH  L HMSEK  Q+LA++S   IP A  KG
Sbjct: 397  GKMCCTLYKTYGKICKGELNVADDSSPSLWHKRLGHMSEKGLQVLAKKS--LIPFA--KG 452

Query: 1655 MTISSCDYCSLSKHISVSF 1711
             ++ SCDYC   K   VSF
Sbjct: 453  TSLDSCDYCLFGKQHKVSF 471



 Score = 55.5 bits (132), Expect(4) = 4e-68
 Identities = 26/39 (66%), Positives = 32/39 (82%)
 Frame = +1

Query: 1723 RKITKLELMHYVVCGPMEVESLGGNKYFVTFINDASGKL 1839
            RK   L+L+H  VCGPMEVES+G NKYFVT+I+DAS K+
Sbjct: 477  RKENVLDLVHSDVCGPMEVESVGHNKYFVTYIDDASRKV 515



 Score = 44.3 bits (103), Expect(4) = 4e-68
 Identities = 23/50 (46%), Positives = 34/50 (68%)
 Frame = +1

Query: 391 KMEDHLYYSDLFDHILGDSAKPKDMSKDE*TRLDRKALGTIRK*GDISFF 540
           +MED LY  DL + I+G++AKP+  S    T+++RKA+G IR+  D S F
Sbjct: 22  RMEDILYCKDLHEPIVGEAAKPEGTSVPTWTKMNRKAIGYIREWVDDSVF 71



 Score =  101 bits (251), Expect(2) = 5e-23
 Identities = 51/82 (62%), Positives = 63/82 (76%)
 Frame = +3

Query: 1923 IFRYLQGTSKLCLGFRRSQAFLYGFTYSDMT*DIDSRKSTSKYLFTFIGGAMSLQSKLQK 2102
            I +YL+GTSKLCL F  S+  L GFT +D+  D+D+RKSTS YLFTF GGA+S QSKLQK
Sbjct: 1164 ILKYLRGTSKLCLCFGGSEPILEGFTDADLAGDLDNRKSTSAYLFTFSGGAVSWQSKLQK 1223

Query: 2103 CAALSTTEAEYIDATKASIEKL 2168
            C ALSTTE+EY+ A +A  E +
Sbjct: 1224 CVALSTTESEYLAANEAGKEMI 1245



 Score = 37.7 bits (86), Expect(2) = 5e-23
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +2

Query: 1844 VYTRPYIAHVVGLVSRFLLCPDKTHWD 1924
            V TRP IAH VG+VSR+L  P + HW+
Sbjct: 1133 VCTRPDIAHAVGVVSRYLSNPGREHWE 1159


>gb|KYP31853.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1314

 Score =  125 bits (315), Expect(4) = 6e-53
 Identities = 65/155 (41%), Positives = 100/155 (64%), Gaps = 4/155 (2%)
 Frame = +3

Query: 540 FHHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSD---LLNQ 710
           F HV+  TN+   W KL +L ++KT  NK    R+L+ L+Y D +++++HL+    L+NQ
Sbjct: 63  FEHVSTYTNAYELWTKLESLIQKKTPRNKAHLYRRLAKLEYMDGQNMIEHLNTFKGLVNQ 122

Query: 711 LTTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRISI 890
           L   +IN+DD+V  L L  SLP++WDTL+IT+ NS P GK+++  V D  LNEE+RR   
Sbjct: 123 LKKAEINIDDEVQTLMLFSSLPESWDTLIITLSNSAPEGKLSLDSVTDSLLNEESRRRER 182

Query: 891 NLRSD-QALAMENKGRFKNRVQDSRG*SKSNNLSQ 992
            L +  +A  ++N+GR KNR +  RG S+  + S+
Sbjct: 183 GLNNQFEANVIDNRGRSKNREKGGRGKSQGRSKSR 217



 Score = 83.2 bits (204), Expect(4) = 6e-53
 Identities = 79/263 (30%), Positives = 119/263 (45%), Gaps = 20/263 (7%)
 Frame = +2

Query: 983  SKSRDPMKCYYSGKVIHIKMYCRILKQERKTSKNKKDFV-------QNNMTAVTYEKVIV 1141
            SKSR  + CYY GK  H K  CR LK++++      D +           TAVT + V  
Sbjct: 214  SKSRTRICCYYCGKPGHRKSECRFLKKDQQAGTVHPDQIDPRKKKEDGTTTAVTSDDV-- 271

Query: 1142 SLIHGHGDYNHVRDPSIE*IINRGATYHCVSKRKLFTTYKVD----TKMENQNVSHIVGI 1309
              + G  +Y ++       II+ GA++H     + F++Y+       KM N   S IVGI
Sbjct: 272  -FLVGEENYLNIAFDECIWIIDSGASFHVTPHEEFFSSYQKGDFGMVKMGNHVTSKIVGI 330

Query: 1310 CDIIIETNIWCTLTLRHMRHIPNFCLQCP**GRI**PIQG*IVEAP*RVCSSCKGIII-- 1483
             +I + T     L L+ +RH+P+  L      ++     G I +         +G +I  
Sbjct: 331  GEIALMTENGNKLMLKEVRHVPDMRLNLISVSKL--DEAGMINQFSADRWKLSRGSMIVA 388

Query: 1484 -------LHNV*DLAKAF*NHINIVQDDASPNLWHNTLTHMSEKEQQLLARQSHIHIPLA 1642
                   L+ +    K     +N+ Q DAS  LWH  L HMSEK  ++LA+    H+P  
Sbjct: 389  RGKKEGSLYTM--QGKICKGDMNVAQ-DASKELWHRRLGHMSEKGLEILAKD---HLPNI 442

Query: 1643 KGKGMTISSCDYCSLSKHISVSF 1711
            KG+   + SC+ C   K   VSF
Sbjct: 443  KGQ--PLESCEDCLAGKQHRVSF 463



 Score = 36.2 bits (82), Expect(4) = 6e-53
 Identities = 22/49 (44%), Positives = 29/49 (59%)
 Frame = +1

Query: 394 MEDHLYYSDLFDHILGDSAKPKDMSKDE*TRLDRKALGTIRK*GDISFF 540
           MEDHLY  DL++ I   S KP+  +  +   L+RKA+  IRK  D S F
Sbjct: 16  MEDHLYCKDLYEPITQQS-KPEGKTDKDWEILNRKAVAVIRKYIDRSLF 63



 Score = 35.4 bits (80), Expect(4) = 6e-53
 Identities = 18/34 (52%), Positives = 24/34 (70%)
 Frame = +1

Query: 1738 LELMHYVVCGPMEVESLGGNKYFVTFINDASGKL 1839
            L+L+H  VC   E  S+GG +YFVTFI+D S K+
Sbjct: 476  LDLVHSDVCSTSE-RSIGGAQYFVTFIDDHSRKV 508



 Score = 92.0 bits (227), Expect(2) = 4e-20
 Identities = 48/82 (58%), Positives = 58/82 (70%)
 Frame = +3

Query: 1923 IFRYLQGTSKLCLGFRRSQAFLYGFTYSDMT*DIDSRKSTSKYLFTFIGGAMSLQSKLQK 2102
            I RYL+GT+K CL F      L G++ +DM  D+DSRKSTS YL TF GGA+S QS+LQK
Sbjct: 1138 ILRYLKGTAKSCLCFGNGNLMLTGYSDADMAGDVDSRKSTSGYLITFAGGAISWQSRLQK 1197

Query: 2103 CAALSTTEAEYIDATKASIEKL 2168
            C ALSTTEAE+I  T+   E L
Sbjct: 1198 CIALSTTEAEFIAITEGCKEIL 1219



 Score = 37.4 bits (85), Expect(2) = 4e-20
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +2

Query: 1844 VYTRPYIAHVVGLVSRFLLCPDKTHWD 1924
            V TRP IA+ VG+VSRFL  P K HW+
Sbjct: 1107 VCTRPDIAYAVGVVSRFLSNPGKEHWN 1133


>gb|OMO99089.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 572

 Score =  178 bits (451), Expect(2) = 1e-52
 Identities = 107/239 (44%), Positives = 145/239 (60%), Gaps = 18/239 (7%)
 Frame = +2

Query: 1049 RILKQERKTSKNKKDFVQ-NNMTAVTYEKVIVSLIHGHGDYNHVRDPSIE*IINRGATYH 1225
            ++LK ERK  K KK+  + +N+T V  ++  VSLI GHGD NHV DPSIE I++ GATYH
Sbjct: 15   KLLKLERKYGKTKKNSEEESNVTVVVSDEEAVSLICGHGDCNHVADPSIEWIVDTGATYH 74

Query: 1226 CVSKRKLFTTYKV----DTKMENQNVSHIVGICDIIIETNIWCTLTLRHMRHIPNFCL-- 1387
            CV KR+L TTYK     +T+M N++VS IVGI DI+++T+  CTLTL+++RHIP+  +  
Sbjct: 75   CVPKRELSTTYKAGDFGETRMGNKSVSQIVGIGDIVVQTSTGCTLTLKNVRHIPDLRMNL 134

Query: 1388 -----------QCP**GRI**PIQG*IVEAP*RVCSSCKGIIILHNV*DLAKAF*NHINI 1534
                       +     R      G ++ A   +C +     + H          N++N 
Sbjct: 135  LSINVLDKEKYESRQKDRQWNHFYGSLLVAKGSLCCTMYKTWLKH--------CGNNVNA 186

Query: 1535 VQDDASPNLWHNTLTHMSEKEQQLLARQSHIHIPLAKGKGMTISSCDYCSLSKHISVSF 1711
            V+DDAS NLWHN L H SEK   LLARQS I IP AKGKG+ ++SCD+C   K+  VSF
Sbjct: 187  VEDDASANLWHNRLAHFSEKGLLLLARQSLIPIPSAKGKGLIVNSCDHCLFGKYRRVSF 245



 Score = 60.1 bits (144), Expect(2) = 1e-52
 Identities = 28/38 (73%), Positives = 33/38 (86%)
 Frame = +1

Query: 1723 RKITKLELMHYVVCGPMEVESLGGNKYFVTFINDASGK 1836
            RK  +LEL+H  VCGPMEVESLGGN+YF+TFI+DAS K
Sbjct: 251  RKENRLELIHSDVCGPMEVESLGGNRYFLTFIDDASLK 288


>gb|OMO51796.1| Reverse transcriptase, RNA-dependent DNA polymerase [Corchorus
           capsularis]
          Length = 1500

 Score =  167 bits (424), Expect(2) = 1e-51
 Identities = 86/154 (55%), Positives = 113/154 (73%), Gaps = 3/154 (1%)
 Frame = +3

Query: 540 FHHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSD---LLNQ 710
           FH+VAQE ++  AW KL ALYERK+ MNK F  RKLSN+KY + +S+ ++LSD   +LN 
Sbjct: 352 FHYVAQEKSAHAAWEKLAALYERKSPMNKAFGARKLSNMKYKEGQSMAEYLSDYQEMLNL 411

Query: 711 LTTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRISI 890
           L TMKI+L ++V  LFLLGS+P++WDTLV+TV NS P+ KVTM+M KD  LNEEARR + 
Sbjct: 412 LLTMKIDLGEEVNVLFLLGSMPESWDTLVVTVTNSAPDKKVTMKMAKDALLNEEARRTNR 471

Query: 891 NLRSDQALAMENKGRFKNRVQDSRG*SKSNNLSQ 992
              S+QAL  +N+GR + + Q  RG SKS N S+
Sbjct: 472 ESGSNQALVTQNRGRSREKGQGFRGRSKSKNRSK 505



 Score = 67.4 bits (163), Expect(2) = 1e-51
 Identities = 33/49 (67%), Positives = 38/49 (77%)
 Frame = +1

Query: 394 MEDHLYYSDLFDHILGDSAKPKDMSKDE*TRLDRKALGTIRK*GDISFF 540
           MEDHLY  DL+D ILGDS KPKD S D+  +LDRK+LGTIRK  DI+ F
Sbjct: 304 MEDHLYCKDLYDPILGDSGKPKDTSDDDWKKLDRKSLGTIRKWVDITVF 352



 Score =  116 bits (290), Expect = 1e-22
 Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 20/170 (11%)
 Frame = +2

Query: 1145 LIHGHGDYNHVRDPSIE*IINRGATYHCVSKRKLFTTYKV----DTKMENQNVSHIVGIC 1312
            ++ GHGD NHV DPSIE I++  A YHCV KR+LFTTYK     +T+M N++VS I+GI 
Sbjct: 518  IVCGHGDCNHVADPSIEWIVDISAAYHCVPKRELFTTYKAGDFGETRMGNKSVSQILGIG 577

Query: 1313 DIIIETNIWCTLTLRHMRHIPNFCL----------------QCP**GRI**PIQG*IVEA 1444
            DI+++T+  CTLTL+++R IP+  +                Q     ++     G ++ A
Sbjct: 578  DIVVQTSTGCTLTLKNVRQIPDLRMNLLSINVLDKEGYESRQKDGQWKL---FYGSLLVA 634

Query: 1445 P*RVCSSCKGIIILHNV*DLAKAF*NHINIVQDDASPNLWHNTLTHMSEK 1594
               +C +     + H          N++N V+DDASPNLWHN LTH+SEK
Sbjct: 635  KGSLCCTMYKTWLKH--------CGNNVNAVEDDASPNLWHNRLTHLSEK 676



 Score = 75.9 bits (185), Expect(2) = 5e-12
 Identities = 36/53 (67%), Positives = 42/53 (79%)
 Frame = +3

Query: 1923 IFRYLQGTSKLCLGFRRSQAFLYGFTYSDMT*DIDSRKSTSKYLFTFIGGAMS 2081
            IFRYL+GTSK+CL F  SQ  L GFT +DM  D+DSRKSTS Y+FTF GGA+S
Sbjct: 1247 IFRYLRGTSKMCLSFETSQTILEGFTDADMAGDLDSRKSTSGYIFTFAGGAVS 1299



 Score = 26.2 bits (56), Expect(2) = 5e-12
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 2098 KSVLPCQLQKLNILMQPK 2151
            +SVLPC L++LNIL + K
Sbjct: 1305 RSVLPCLLRRLNILQRLK 1322


>gb|KYP76811.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1305

 Score =  118 bits (295), Expect(4) = 8e-49
 Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 11/159 (6%)
 Frame = +3

Query: 540 FHHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSD---LLNQ 710
           F HV+  TN+   W KL ++ ++KT  NK   +R+L  L+Y D  S+++HL++   L+NQ
Sbjct: 73  FEHVSTYTNAYELWAKLESMIQKKTPRNKANLVRRLVKLEYKDGHSMIEHLNNFKGLVNQ 132

Query: 711 LTTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRI-- 884
           LT +++ +DD++  L LL SLP++WDTLV+T+ NS P GK+TM  V D  L EE+RR+  
Sbjct: 133 LTKIEMKIDDELQALLLLSSLPESWDTLVVTLSNSAPEGKLTMDAVSDSLLGEESRRMER 192

Query: 885 --SINLRS---DQALAMENKGRFKNRVQ-DSRG*SKSNN 983
             SI+  +   +     E +GR K+R Q  SRG SKS +
Sbjct: 193 GESIHPEANIIENRGKNETRGRSKSRDQYQSRGRSKSRS 231



 Score = 82.8 bits (203), Expect(4) = 8e-49
 Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 11/254 (4%)
 Frame = +2

Query: 983  SKSRDPMKCYYSGKVIHIKMYCRILKQERKTSKNKKDFVQNNMTAVTYEKVIVSLIHGHG 1162
            SKSR  + CYY G++ H KM CR  K+++K           +M  +  E  I+++ +   
Sbjct: 227  SKSRSKITCYYCGRMGHRKMECRSFKRDQKAE---------DMLYIIREGNILNIAYDDS 277

Query: 1163 DYNHVRDPSIE*IINRGATYHCVSKRKLFTTYKVD----TKMENQNVSHIVGICDIIIET 1330
             +          I++ GA++H       F++Y+       +M NQ+ S IVGI DII+ T
Sbjct: 278  SW----------IVDSGASFHVTPHGSFFSSYQSGDFGTVQMGNQDRSKIVGIGDIILTT 327

Query: 1331 NIWCTLTLRHMRHIPNFCLQCP**GRI**PIQG*IVEAP*RVCSSCKGIIILHN------ 1492
            +  C L L+ +RH+P   L     G++     G +           KG +++        
Sbjct: 328  STGCRLVLKDVRHVPAMRLNLISAGKL--DDAGLMNYFGEGKWKLTKGSLVMARGKKEGS 385

Query: 1493 -V*DLAKAF*NHINIVQDDASPNLWHNTLTHMSEKEQQLLARQSHIHIPLAKGKGMTISS 1669
                 AK     +NI  DD    +WH  L H+SEK   +LAR+      L+  KG ++  
Sbjct: 386  LYVMQAKLCKGEVNITTDDI--EVWHKRLGHISEKGLHILARKQ----LLSNVKGKSLDP 439

Query: 1670 CDYCSLSKHISVSF 1711
            C +C   K   V+F
Sbjct: 440  CAHCLAGKQHRVAF 453



 Score = 35.0 bits (79), Expect(4) = 8e-49
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = +1

Query: 1723 RKITKLELMHYVVCGPMEVESLGGNKYFVTFINDASGKL 1839
            R+   L+L+H  VC  M  +S+GG  YFVTFI+D S K+
Sbjct: 461  RRKNILDLVHTDVCS-MSEKSIGGALYFVTFIDDHSRKV 498



 Score = 30.8 bits (68), Expect(4) = 8e-49
 Identities = 21/49 (42%), Positives = 27/49 (55%)
 Frame = +1

Query: 394 MEDHLYYSDLFDHILGDSAKPKDMSKDE*TRLDRKALGTIRK*GDISFF 540
           MEDHLY  DL + I+    K +  S  +   L+RKA+  IRK  D S F
Sbjct: 26  MEDHLYCKDLHEPII-YKEKVEGKSDAQWELLNRKAVAMIRKYIDKSLF 73



 Score =  101 bits (252), Expect(2) = 3e-22
 Identities = 54/82 (65%), Positives = 62/82 (75%)
 Frame = +3

Query: 1923 IFRYLQGTSKLCLGFRRSQAFLYGFTYSDMT*DIDSRKSTSKYLFTFIGGAMSLQSKLQK 2102
            I RYL+GTSK CL F + +  L G+T +D+  DIDSRKSTS YL TF GGA+S QSKLQK
Sbjct: 1129 ILRYLRGTSKRCLCFGKGKPVLQGYTDADLAGDIDSRKSTSGYLTTFAGGAVSWQSKLQK 1188

Query: 2103 CAALSTTEAEYIDATKASIEKL 2168
            C ALSTTEAEYI AT+A  E L
Sbjct: 1189 CVALSTTEAEYIAATEACKEML 1210



 Score = 35.0 bits (79), Expect(2) = 3e-22
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 1844 VYTRPYIAHVVGLVSRFLLCPDKTHW 1921
            + TRP IA+ VG+VSRFL  P   HW
Sbjct: 1098 ICTRPDIAYAVGVVSRFLADPGNEHW 1123


>gb|KYP76810.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 1305

 Score =  118 bits (295), Expect(4) = 8e-49
 Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 11/159 (6%)
 Frame = +3

Query: 540 FHHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSD---LLNQ 710
           F HV+  TN+   W KL ++ ++KT  NK   +R+L  L+Y D  S+++HL++   L+NQ
Sbjct: 73  FEHVSTYTNAYELWAKLESMIQKKTPRNKANLVRRLVKLEYKDGHSMIEHLNNFKGLVNQ 132

Query: 711 LTTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRI-- 884
           LT +++ +DD++  L LL SLP++WDTLV+T+ NS P GK+TM  V D  L EE+RR+  
Sbjct: 133 LTKIEMKIDDELQALLLLSSLPESWDTLVVTLSNSAPEGKLTMDAVSDSLLGEESRRMER 192

Query: 885 --SINLRS---DQALAMENKGRFKNRVQ-DSRG*SKSNN 983
             SI+  +   +     E +GR K+R Q  SRG SKS +
Sbjct: 193 GESIHPEANIIENRGKNETRGRSKSRDQYQSRGRSKSRS 231



 Score = 82.8 bits (203), Expect(4) = 8e-49
 Identities = 71/254 (27%), Positives = 114/254 (44%), Gaps = 11/254 (4%)
 Frame = +2

Query: 983  SKSRDPMKCYYSGKVIHIKMYCRILKQERKTSKNKKDFVQNNMTAVTYEKVIVSLIHGHG 1162
            SKSR  + CYY G++ H KM CR  K+++K           +M  +  E  I+++ +   
Sbjct: 227  SKSRSKITCYYCGRMGHRKMECRSFKRDQKAE---------DMLYIIREGNILNIAYDDS 277

Query: 1163 DYNHVRDPSIE*IINRGATYHCVSKRKLFTTYKVD----TKMENQNVSHIVGICDIIIET 1330
             +          I++ GA++H       F++Y+       +M NQ+ S IVGI DII+ T
Sbjct: 278  SW----------IVDSGASFHVTPHGSFFSSYQSGDFGTVQMGNQDRSKIVGIGDIILTT 327

Query: 1331 NIWCTLTLRHMRHIPNFCLQCP**GRI**PIQG*IVEAP*RVCSSCKGIIILHN------ 1492
            +  C L L+ +RH+P   L     G++     G +           KG +++        
Sbjct: 328  STGCRLVLKDVRHVPAMRLNLISAGKL--DDAGLMNYFGEGKWKLTKGSLVMARGKKEGS 385

Query: 1493 -V*DLAKAF*NHINIVQDDASPNLWHNTLTHMSEKEQQLLARQSHIHIPLAKGKGMTISS 1669
                 AK     +NI  DD    +WH  L H+SEK   +LAR+      L+  KG ++  
Sbjct: 386  LYVMQAKLCKGEVNITTDDL--EVWHKRLGHISEKGLHILARKQ----LLSNVKGKSLDP 439

Query: 1670 CDYCSLSKHISVSF 1711
            C +C   K   V+F
Sbjct: 440  CAHCLAGKQHRVAF 453



 Score = 35.0 bits (79), Expect(4) = 8e-49
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = +1

Query: 1723 RKITKLELMHYVVCGPMEVESLGGNKYFVTFINDASGKL 1839
            R+   L+L+H  VC  M  +S+GG  YFVTFI+D S K+
Sbjct: 461  RRKNILDLVHTDVCS-MSEKSIGGALYFVTFIDDHSRKV 498



 Score = 30.8 bits (68), Expect(4) = 8e-49
 Identities = 21/49 (42%), Positives = 27/49 (55%)
 Frame = +1

Query: 394 MEDHLYYSDLFDHILGDSAKPKDMSKDE*TRLDRKALGTIRK*GDISFF 540
           MEDHLY  DL + I+    K +  S  +   L+RKA+  IRK  D S F
Sbjct: 26  MEDHLYCKDLHEPII-YKEKVEGKSDAQWELLNRKAVAMIRKYIDKSLF 73



 Score =  101 bits (252), Expect(2) = 3e-22
 Identities = 54/82 (65%), Positives = 62/82 (75%)
 Frame = +3

Query: 1923 IFRYLQGTSKLCLGFRRSQAFLYGFTYSDMT*DIDSRKSTSKYLFTFIGGAMSLQSKLQK 2102
            I RYL+GTSK CL F + +  L G+T +D+  DIDSRKSTS YL TF GGA+S QSKLQK
Sbjct: 1129 ILRYLRGTSKRCLCFGKGKPVLQGYTDADLAGDIDSRKSTSGYLTTFAGGAVSWQSKLQK 1188

Query: 2103 CAALSTTEAEYIDATKASIEKL 2168
            C ALSTTEAEYI AT+A  E L
Sbjct: 1189 CVALSTTEAEYIAATEACKEML 1210



 Score = 35.0 bits (79), Expect(2) = 3e-22
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 1844 VYTRPYIAHVVGLVSRFLLCPDKTHW 1921
            + TRP IA+ VG+VSRFL  P   HW
Sbjct: 1098 ICTRPDIAYAVGVVSRFLADPGNEHW 1123


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  123 bits (308), Expect(3) = 2e-47
 Identities = 64/155 (41%), Positives = 101/155 (65%), Gaps = 5/155 (3%)
 Frame = +3

Query: 543 HHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSD---LLNQL 713
           +H+  ET++   WNKL  LY  KT  NK+F ++++ N++Y +   I  H++D   +L+QL
Sbjct: 71  NHIINETHARSLWNKLETLYASKTGNNKLFLLKQMMNIRYREGTLINDHVNDFQGVLDQL 130

Query: 714 TTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRISIN 893
           + M I  +D+V GL+LL +LPD+W+T  +++ NS PNG VTM+ VK G LNEEARR S +
Sbjct: 131 SGMGIKFEDEVLGLWLLNTLPDSWETFRVSLTNSAPNGVVTMEYVKSGILNEEARRRSQD 190

Query: 894 LRSDQA--LAMENKGRFKNRVQDSRG*SKSNNLSQ 992
             + Q+  L  +++GR K + Q  R  S+S + S+
Sbjct: 191 TSTSQSDILVTDDRGRNKQKGQRGRDKSRSKSRSR 225



 Score = 67.0 bits (162), Expect(3) = 2e-47
 Identities = 67/257 (26%), Positives = 112/257 (43%), Gaps = 14/257 (5%)
 Frame = +2

Query: 983  SKSRDPMK---CYYSGKVIHIKMYCRILKQERKTSKNKKDFVQNNMTAVTYEKVIVSLIH 1153
            SKSR   K   C+Y GK  HIK Y    K+E+K  ++ KD    N  A     ++V+   
Sbjct: 220  SKSRSRYKDIECHYCGKKSHIKKYSFKWKREKK--QDNKDGDTGNQVATVRADLLVAC-- 275

Query: 1154 GHGDYNHVRDPSIE*IINRGATYHCVSKRKLFTTYKV----DTKMENQNVSHIVGICDII 1321
               +  +V       I++ GA YH   +++ FT+Y      + +M N     + G   + 
Sbjct: 276  -DDNVINVACHETTWIVDSGAAYHVTPRKEFFTSYTPGDFGELRMGNDGQVKVTGTGTVC 334

Query: 1322 IETNIWCTLTLRHMRHIPNFCLQCP**GRI**PIQG*IVEAP*RVCSSCKGIIIL----- 1486
            +ET+    L L++++H P+  L     G++     G             KG +++     
Sbjct: 335  LETSNGTKLVLKNVKHAPDIRLNLISTGKL--DDDGFCCFFGDGHWKITKGSLVVARGNK 392

Query: 1487 -HNV*DL-AKAF*NHINIVQDDASPNLWHNTLTHMSEKEQQLLARQSHIHIPLAKGKGMT 1660
              N+  L +    + +N+V+ + +  LWH  L HMS K    LA++S     L+  K   
Sbjct: 393  SSNLYSLQSSVSDDSVNVVEKECASELWHKRLGHMSVKGIDYLAKKS----KLSGVKEAK 448

Query: 1661 ISSCDYCSLSKHISVSF 1711
            +  C +C   K   VSF
Sbjct: 449  LDKCVHCLAGKQRRVSF 465



 Score = 51.6 bits (122), Expect(3) = 2e-47
 Identities = 25/39 (64%), Positives = 29/39 (74%)
 Frame = +1

Query: 1723 RKITKLELMHYVVCGPMEVESLGGNKYFVTFINDASGKL 1839
            RK   L+L+H  VCGPM+V SLGG  YFVTFI+D S KL
Sbjct: 472  RKSEPLDLIHSDVCGPMKVRSLGGASYFVTFIDDYSRKL 510



 Score = 91.7 bits (226), Expect(2) = 6e-21
 Identities = 49/82 (59%), Positives = 59/82 (71%)
 Frame = +3

Query: 1923 IFRYLQGTSKLCLGFRRSQAFLYGFTYSDMT*DIDSRKSTSKYLFTFIGGAMSLQSKLQK 2102
            I RYL+GTS L L F   +  L G+T SDM  DID+RKSTS YL T+ GGA+S QS+LQK
Sbjct: 1152 ILRYLRGTSSLSLCFGTGKPILTGYTDSDMAGDIDTRKSTSGYLITYAGGAVSWQSRLQK 1211

Query: 2103 CAALSTTEAEYIDATKASIEKL 2168
            C  LSTTEAE+I + +AS E L
Sbjct: 1212 CVDLSTTEAEFIASVEASKEML 1233



 Score = 40.4 bits (93), Expect(2) = 6e-21
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +2

Query: 1844 VYTRPYIAHVVGLVSRFLLCPDKTHWD 1924
            V TRP IAH VG+VSRFL  P + HWD
Sbjct: 1121 VCTRPDIAHAVGVVSRFLSNPGREHWD 1147


>gb|OMO59210.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 855

 Score =  130 bits (328), Expect(2) = 3e-45
 Identities = 70/131 (53%), Positives = 93/131 (70%), Gaps = 12/131 (9%)
 Frame = +2

Query: 983  SKSRDPMKCYYSGKVIHIKMYCRILKQERKTSKNKKDFVQ-NNMTAVTYEKVIVSLIHGH 1159
            SKSRDP+K  + GKV H+K  C++LKQERK  K+KK+  + +N+T V  ++  VSLI GH
Sbjct: 73   SKSRDPVKRNHCGKVGHLKRNCKLLKQERKDGKSKKNSEEESNVTVVVSDEETVSLICGH 132

Query: 1160 GDYNHVRDPSIE*IINRGATYHCVSKRKLFTTYKV----DTKMENQNVSHIVGICDIIIE 1327
            GD NHV DPS E I++ GATYHCV KR+LFTTYK     +T+M N++VS IVGI DI+++
Sbjct: 133  GDCNHVTDPSNEWIVDTGATYHCVPKRELFTTYKAGDFSETRMGNKSVSQIVGIGDIVVQ 192

Query: 1328 T-------NIW 1339
            T       N+W
Sbjct: 193  TMEDDASPNLW 203



 Score = 82.8 bits (203), Expect(2) = 3e-45
 Identities = 41/74 (55%), Positives = 53/74 (71%)
 Frame = +3

Query: 771 LPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRISINLRSDQALAMENKGRFKNRV 950
           +P++WDTLV+ V NS P+ KVTM+M  D  LNEEARR +    S QALA+EN+GR + +V
Sbjct: 1   MPESWDTLVVMVTNSAPDKKVTMEMANDASLNEEARRTNRESGSSQALAIENRGRSREKV 60

Query: 951 QDSRG*SKSNNLSQ 992
           Q  RG SKS N S+
Sbjct: 61  QGFRGRSKSKNRSK 74



 Score =  107 bits (268), Expect = 3e-20
 Identities = 54/77 (70%), Positives = 62/77 (80%)
 Frame = +3

Query: 1923 IFRYLQGTSKLCLGFRRSQAFLYGFTYSDMT*DIDSRKSTSKYLFTFIGGAMSLQSKLQK 2102
            IFRYL+GTSK+CL F  +Q  L GFT +DM  D+DSRKSTS Y+FTF GGA+S QSKLQK
Sbjct: 698  IFRYLRGTSKMCLSFGTTQTILEGFTDADMAGDLDSRKSTSGYIFTFAGGAISWQSKLQK 757

Query: 2103 CAALSTTEAEYIDATKA 2153
            C ALSTTEAEYI A +A
Sbjct: 758  CVALSTTEAEYIAAIEA 774


>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  114 bits (286), Expect(3) = 1e-44
 Identities = 59/153 (38%), Positives = 96/153 (62%), Gaps = 5/153 (3%)
 Frame = +3

Query: 540 FHHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSDL---LNQ 710
           ++H++  T++   W+KL  LY  KT  NK+F + KL  +KY +  ++  HL+++   ++Q
Sbjct: 70  YNHISGVTHARSLWDKLEELYASKTGNNKLFYLTKLMQVKYVEGTTVADHLNEIQGIVDQ 129

Query: 711 LTTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRISI 890
           L+ M I  DD+V  L +L +LP++W+TL +++ NS PNG V M+ VK G LNEE RR S 
Sbjct: 130 LSGMGIKFDDEVLALMVLATLPESWETLKVSITNSAPNGVVNMETVKSGILNEEMRRRSQ 189

Query: 891 NLRSDQA--LAMENKGRFKNRVQDSRG*SKSNN 983
              S Q+  LA+  +GR +N+ Q +R  S+  +
Sbjct: 190 GTSSSQSEVLAVTTRGRSQNKSQSNRDKSRGKS 222



 Score = 76.3 bits (186), Expect(3) = 1e-44
 Identities = 69/256 (26%), Positives = 112/256 (43%), Gaps = 19/256 (7%)
 Frame = +2

Query: 1001 MKCYYSGKVIHIKMYCRILKQERKTSKNKKDFVQNNMTAVTYEKVIVSLIHGHGDYNHVR 1180
            ++C+Y  K  HIK +CR  + ++K +K KK         V  E+      +  G++N V 
Sbjct: 228  VECHYCKKKGHIKRFCRQFQNDQKKNKGKK---------VKPEESSDDETNSFGEFNVVY 278

Query: 1181 DPSI--------E*IINRGATYHCVSKRKLFTTYKVD----TKMENQNVSHIVGICDIII 1324
            D  I          +I+ GAT H   +R+LF++Y +      KM N N S +VG  D+ +
Sbjct: 279  DDDIINLTTQEMTWVIDSGATIHATPRRELFSSYTLGDFGRVKMGNANFSTVVGKGDVCL 338

Query: 1325 ETNIWCTLTLRHMRHIPNFCLQCP**GRI**PIQG*IVEAP*RVCSSCKGIIILHNV*DL 1504
            ET     L LR +RH+P+  L      ++    +G             KG +++      
Sbjct: 339  ETMNGMKLLLRDVRHVPDMRLNLISVDKL--DEEGYCNTFHNGQWKLTKGSLMVARGTKQ 396

Query: 1505 AKAF*NH-------INIVQDDASPNLWHNTLTHMSEKEQQLLARQSHIHIPLAKGKGMTI 1663
            +K +          IN+ ++D++  LWH  L HMSEK    L +++     L     + +
Sbjct: 397  SKLYVTQASISQQVINVAENDSNIKLWHRRLGHMSEKSMARLVKKN----ALPGLNQIQL 452

Query: 1664 SSCDYCSLSKHISVSF 1711
              C  C   K   VSF
Sbjct: 453  KKCADCLAGKQNRVSF 468



 Score = 41.6 bits (96), Expect(3) = 1e-44
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +1

Query: 1723 RKITKLELMHYVVCGPMEVESLGGNKYFVTFINDASGK 1836
            R+   L+L+H  VCGP + +SLGG +YFVTFI+D S K
Sbjct: 475  RRQNVLDLVHSDVCGPFK-KSLGGARYFVTFIDDHSRK 511



 Score = 99.4 bits (246), Expect(2) = 1e-23
 Identities = 52/80 (65%), Positives = 59/80 (73%)
 Frame = +3

Query: 1923 IFRYLQGTSKLCLGFRRSQAFLYGFTYSDMT*DIDSRKSTSKYLFTFIGGAMSLQSKLQK 2102
            I RYL+GTSKLCL F      L G+T +DM  D+DSRKSTS YL  F GGA+S QSKLQK
Sbjct: 1155 ILRYLRGTSKLCLCFGEDNPVLVGYTDADMAGDVDSRKSTSGYLINFSGGAVSWQSKLQK 1214

Query: 2103 CAALSTTEAEYIDATKASIE 2162
            C ALSTTEAE+I AT+A  E
Sbjct: 1215 CVALSTTEAEFIAATEACKE 1234



 Score = 41.6 bits (96), Expect(2) = 1e-23
 Identities = 19/27 (70%), Positives = 20/27 (74%)
 Frame = +2

Query: 1844 VYTRPYIAHVVGLVSRFLLCPDKTHWD 1924
            V TRP IAH VG+VSRFL  P K HWD
Sbjct: 1124 VCTRPDIAHAVGVVSRFLSNPGKEHWD 1150


>emb|CAN75440.1| hypothetical protein VITISV_007304 [Vitis vinifera]
          Length = 1362

 Score =  112 bits (280), Expect(3) = 2e-43
 Identities = 63/149 (42%), Positives = 89/149 (59%), Gaps = 4/149 (2%)
 Frame = +3

Query: 543 HHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSD---LLNQL 713
           +HV++E +    WNKL  LY RKT  NK+F I+K+ +LKY D      HL+    ++NQL
Sbjct: 49  NHVSEEKHXRSXWNKLEQLYARKTXNNKLFLIKKMMSLKYQDGTXXTDHLNTFQGIINQL 108

Query: 714 TTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRISIN 893
             M I  +++V GL+LLG+LPD+W+T   ++ NS P+G + M +VK   LNEE RR S  
Sbjct: 109 AGMNIKFEEEVQGLWLLGTLPDSWETFRTSLSNSAPDGIMNMDLVKSCVLNEEMRRKSQG 168

Query: 894 LRS-DQALAMENKGRFKNRVQDSRG*SKS 977
             S    L +   GR K+R   +R  SKS
Sbjct: 169 SSSQSNVLVIXKXGRSKSRGPKNRDRSKS 197



 Score = 74.3 bits (181), Expect(3) = 2e-43
 Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 21/258 (8%)
 Frame = +2

Query: 1001 MKCYYSGKVIHIKMYCRILKQERKTSKNKKDFVQN----NMTAVTYEKVIVSLIHGHGDY 1168
            ++C+Y     HIK YCR LK++ K  K K+    N    +  A T    ++  ++     
Sbjct: 205  VECHYCHLKGHIKKYCRQLKRDMKQGKVKEKKNDNGGEDDQVATTISDFLI--VYDSDVV 262

Query: 1169 NHVRDPSIE*IINRGATYHCVSKRKLFTTYKV----DTKMENQNVSHIVGICDIIIETNI 1336
            N     S   +I+ GA+ H   ++  FT+Y        +M N   +  +G+ D+ +ET+ 
Sbjct: 263  NFACQESXW-VIDXGASIHATPQKDFFTSYTSGDFGSVRMGNDGSAKAIGMGDVRLETSN 321

Query: 1337 WCTLTLRHMRHIPNFCLQCP**GRI**P-------------IQG*IVEAP*RVCSSCKGI 1477
               LTL++++HIP+  +     G++                 +G +V A     SS   +
Sbjct: 322  GTMLTLKNVKHIPDIRMNLISTGKLDDEGFCNTFRDSQWKLTRGSMVIAKGNKSSS---L 378

Query: 1478 IILHNV*DLAKAF*NHINIVQDDASPNLWHNTLTHMSEKEQQLLARQSHIHIPLAKGKGM 1657
             ++      A+   + IN V DD++  LWHN L HMSEK   +LA++ ++   + KG   
Sbjct: 379  YLMQ-----ARVIDSSINAVDDDSTFELWHNKLGHMSEKGLMILAKK-NLLXGMKKG--- 429

Query: 1658 TISSCDYCSLSKHISVSF 1711
            ++  C +C   K   V+F
Sbjct: 430  SLKRCAHCLAGKQTRVAF 447



 Score = 41.6 bits (96), Expect(3) = 2e-43
 Identities = 20/39 (51%), Positives = 29/39 (74%)
 Frame = +1

Query: 1723 RKITKLELMHYVVCGPMEVESLGGNKYFVTFINDASGKL 1839
            RK   L+L++  V GPM+ ++LGG+ YFVTFI+D S K+
Sbjct: 454  RKPGMLDLVYSDVYGPMKTKTLGGSLYFVTFIDDHSRKI 492



 Score = 96.7 bits (239), Expect(2) = 4e-21
 Identities = 52/82 (63%), Positives = 60/82 (73%)
 Frame = +3

Query: 1923 IFRYLQGTSKLCLGFRRSQAFLYGFTYSDMT*DIDSRKSTSKYLFTFIGGAMSLQSKLQK 2102
            I RYL+GTSKL L F   +  L G+T SDM  D+D+RKSTS YL TF GGA+S QS+LQK
Sbjct: 1125 IMRYLRGTSKLKLTFGSGKPILVGYTDSDMAGDVDNRKSTSGYLMTFSGGAVSWQSRLQK 1184

Query: 2103 CAALSTTEAEYIDATKASIEKL 2168
            C ALSTTEAEYI A +A  E L
Sbjct: 1185 CVALSTTEAEYIAAVEACKELL 1206



 Score = 36.2 bits (82), Expect(2) = 4e-21
 Identities = 16/27 (59%), Positives = 20/27 (74%)
 Frame = +2

Query: 1844 VYTRPYIAHVVGLVSRFLLCPDKTHWD 1924
            V TRP IA+ VG+VSRFL  P + HW+
Sbjct: 1094 VCTRPDIAYAVGVVSRFLSNPGRHHWE 1120


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease
 emb|CAA32025.1| unnamed protein product [Nicotiana tabacum]
          Length = 1328

 Score = 95.9 bits (237), Expect(3) = 1e-40
 Identities = 81/271 (29%), Positives = 119/271 (43%), Gaps = 19/271 (7%)
 Frame = +2

Query: 983  SKSRDPMKCYYSGKVIHIKMYC-RILKQERKTSKNKKDFVQNNMTAVTYEKVIVSLIHGH 1159
            SKSR    CY   +  H K  C    K + +TS  K D   N    V     +V  I+  
Sbjct: 225  SKSR-VRNCYNCNQPGHFKRDCPNPRKGKGETSGQKND--DNTAAMVQNNDNVVLFINEE 281

Query: 1160 GDYNHVRDPSIE*IINRGATYHCVSKRKLFTTYKVD----TKMENQNVSHIVGICDIIIE 1327
             +  H+  P  E +++  A++H    R LF  Y        KM N + S I GI DI I+
Sbjct: 282  EECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIK 341

Query: 1328 TNIWCTLTLRHMRHIPNFCLQCP**GRI**PIQG*IVEA-------P*RVCSSCKGIIIL 1486
            TN+ CTL L+ +RH+P+  +           I G  ++          +     KG +++
Sbjct: 342  TNVGCTLVLKDVRHVPDLRMNL---------ISGIALDRDGYESYFANQKWRLTKGSLVI 392

Query: 1487 HN-------V*DLAKAF*NHINIVQDDASPNLWHNTLTHMSEKEQQLLARQSHIHIPLAK 1645
                         A+     +N  QD+ S +LWH  + HMSEK  Q+LA++S I    + 
Sbjct: 393  AKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLI----SY 448

Query: 1646 GKGMTISSCDYCSLSKHISVSFCLLKEKLLS 1738
             KG T+  CDYC   K   VSF    E+ L+
Sbjct: 449  AKGTTVKPCDYCLFGKQHRVSFQTSSERKLN 479



 Score = 63.2 bits (152), Expect(3) = 1e-40
 Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 11/161 (6%)
 Frame = +3

Query: 543 HHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHL---SDLLNQL 713
           +++  E  +   W +L +LY  KT  NK++  ++L  L  ++  + + HL   + L+ QL
Sbjct: 73  NNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQL 132

Query: 714 TTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDG----FLNEEARR 881
             + + ++++   + LL SLP ++D L  T++    +GK T+++ KD      LNE+ R+
Sbjct: 133 ANLGVKIEEEDKAILLLNSLPSSYDNLATTIL----HGKTTIEL-KDVTSALLLNEKMRK 187

Query: 882 ISINLRSDQALAMENKGRFKNRVQDSRG*S----KSNNLSQ 992
              N    QAL  E +GR   R  ++ G S    KS N S+
Sbjct: 188 KPEN--QGQALITEGRGRSYQRSSNNYGRSGARGKSKNRSK 226



 Score = 60.1 bits (144), Expect(3) = 1e-40
 Identities = 27/39 (69%), Positives = 34/39 (87%)
 Frame = +1

Query: 1723 RKITKLELMHYVVCGPMEVESLGGNKYFVTFINDASGKL 1839
            RK+  L+L++  VCGPME+ES+GGNKYFVTFI+DAS KL
Sbjct: 476  RKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKL 514



 Score = 94.7 bits (234), Expect(2) = 1e-21
 Identities = 50/82 (60%), Positives = 60/82 (73%)
 Frame = +3

Query: 1923 IFRYLQGTSKLCLGFRRSQAFLYGFTYSDMT*DIDSRKSTSKYLFTFIGGAMSLQSKLQK 2102
            I RYL+GT+  CL F  S   L G+T +DM  DID+RKS++ YLFTF GGA+S QSKLQK
Sbjct: 1154 ILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQK 1213

Query: 2103 CAALSTTEAEYIDATKASIEKL 2168
            C ALSTTEAEYI AT+   E +
Sbjct: 1214 CVALSTTEAEYIAATETGKEMI 1235



 Score = 39.7 bits (91), Expect(2) = 1e-21
 Identities = 18/27 (66%), Positives = 20/27 (74%)
 Frame = +2

Query: 1844 VYTRPYIAHVVGLVSRFLLCPDKTHWD 1924
            V TRP IAH VG+VSRFL  P K HW+
Sbjct: 1123 VCTRPDIAHAVGVVSRFLENPGKEHWE 1149


>gb|KYP64759.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 369

 Score =  118 bits (295), Expect(3) = 3e-40
 Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 11/159 (6%)
 Frame = +3

Query: 540 FHHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSD---LLNQ 710
           F HV+  TN+   W KL ++ ++KT  NK   +R+L  L+Y D  S+++HL++   L+NQ
Sbjct: 63  FEHVSTYTNAYELWAKLESMIQKKTPRNKANLVRRLVKLEYKDGHSMIEHLNNFKGLVNQ 122

Query: 711 LTTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRI-- 884
           LT +++ +DD++  L LL SLP++WDTLV+T+ NS P GK+TM  V D  L EE+RR+  
Sbjct: 123 LTKIEMKIDDELQALLLLSSLPESWDTLVVTLSNSAPEGKLTMDAVSDSLLGEESRRMER 182

Query: 885 --SINLRS---DQALAMENKGRFKNRVQ-DSRG*SKSNN 983
             SI+  +   +     E +GR K+R Q  SRG SKS +
Sbjct: 183 GESIHPEANIIENRGKNETRGRSKSRDQYQSRGRSKSRS 221



 Score = 68.6 bits (166), Expect(3) = 3e-40
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 4/135 (2%)
 Frame = +2

Query: 983  SKSRDPMKCYYSGKVIHIKMYCRILKQERKTSKNKKDFVQNNMTAVTYEKVIVSLIHGHG 1162
            SKSR  + CYY G++ H KM CR  K+++K           +M  +  E  I+++ +   
Sbjct: 217  SKSRSKITCYYCGRMGHRKMECRSFKRDQKAE---------DMLYIIREGNILNIAYDDS 267

Query: 1163 DYNHVRDPSIE*IINRGATYHCVSKRKLFTTYKVD----TKMENQNVSHIVGICDIIIET 1330
             +          I++ GA++H       F++Y+       +M NQ+ S IVGI DII+ T
Sbjct: 268  SW----------IVDSGASFHVTPHGSFFSSYQSGDFGTVQMGNQDRSKIVGIGDIILTT 317

Query: 1331 NIWCTLTLRHMRHIP 1375
            +  C L L+ +RH+P
Sbjct: 318  STGCRLVLKDVRHVP 332



 Score = 30.8 bits (68), Expect(3) = 3e-40
 Identities = 21/49 (42%), Positives = 27/49 (55%)
 Frame = +1

Query: 394 MEDHLYYSDLFDHILGDSAKPKDMSKDE*TRLDRKALGTIRK*GDISFF 540
           MEDHLY  DL + I+    K +  S  +   L+RKA+  IRK  D S F
Sbjct: 16  MEDHLYCKDLHEPII-YKEKVEGKSDAQWELLNRKAVAMIRKYIDKSLF 63


>gb|KYP60296.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 990

 Score =  107 bits (268), Expect(3) = 5e-40
 Identities = 58/155 (37%), Positives = 94/155 (60%), Gaps = 4/155 (2%)
 Frame = +3

Query: 540 FHHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSD---LLNQ 710
           ++H+A ET++   W K+ +LY  K+  NK++ +  L NL+Y +  SI  HL++   LL+Q
Sbjct: 11  YNHIANETHARTLWKKIESLYASKSGNNKLYLLNCLMNLRYRESSSISDHLNEFQGLLDQ 70

Query: 711 LTTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRISI 890
           L+ M I  DD+   L+LL +LP++W+T  +++ NS PNG V++Q  K G  NEE RR + 
Sbjct: 71  LSRMGIKFDDEFLVLWLLNTLPESWETFRVSITNSAPNGVVSLQAKKSGAFNEEMRRKAQ 130

Query: 891 NLRS-DQALAMENKGRFKNRVQDSRG*SKSNNLSQ 992
              S  + L  EN+GR + + +   G  KS + S+
Sbjct: 131 GSSSQSKVLVTENRGRSQKK-EPKGGREKSRSKSK 164



 Score = 62.4 bits (150), Expect(3) = 5e-40
 Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 15/258 (5%)
 Frame = +2

Query: 983  SKSR-DPMKCYYSGKVIHIKMYCRILKQERKTSKNKKDFVQNNMTAVTYEKVIVSLIHGH 1159
            SKSR   ++C+Y  K  HI+  C + K+E K  K                          
Sbjct: 163  SKSRYKNVECHYCHKTWHIQRNCFLWKKENKGKK-------------------------- 196

Query: 1160 GDYNHVRDPSIE*IINRGATYHCVSKRKLFTTYKVDT----KMENQNVSHIVGICDIIIE 1327
               N V D S+  I++ GAT H   +++ FT+Y        KM N  VS ++G+ D+ ++
Sbjct: 197  --VNLVSDESMW-IVDSGATLHVTPRKEFFTSYTSGDFGVLKMGNDGVSKVIGVGDVFLQ 253

Query: 1328 TNIWCTLTLRHMRHIPN-----FCLQCP**GRI**PIQG*IVEAP*RVCSSCKGIIILHN 1492
            TN+   L LR ++H+P+       +Q    G       G             KG +++  
Sbjct: 254  TNMGMQLLLRGVKHVPDVRFNLISVQILDDG-------GYDNHFGSGKWKLTKGNLVVAR 306

Query: 1493 V*DLAKAF*NHINIVQD-----DASPNLWHNTLTHMSEKEQQLLARQSHIHIPLAKGKGM 1657
                +K +     + +D     D   +LWH  L+H+SEK    LA++      L   K  
Sbjct: 307  GEKNSKLYWTKALVAKDNVNAMDMEASLWHRRLSHISEKGLNCLAKKD----VLQGLKIA 362

Query: 1658 TISSCDYCSLSKHISVSF 1711
             +  C +C   K   VSF
Sbjct: 363  ELEKCSHCMAGKQTRVSF 380



 Score = 46.6 bits (109), Expect(3) = 5e-40
 Identities = 22/39 (56%), Positives = 28/39 (71%)
 Frame = +1

Query: 1723 RKITKLELMHYVVCGPMEVESLGGNKYFVTFINDASGKL 1839
            RK   L+L+H  VCGP++V+S  G  YFVTFI+D S KL
Sbjct: 387  RKSKLLQLVHSDVCGPLKVKSFSGALYFVTFIDDCSKKL 425


>gb|KYP73265.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 728

 Score =  108 bits (270), Expect(3) = 2e-39
 Identities = 58/155 (37%), Positives = 93/155 (60%), Gaps = 4/155 (2%)
 Frame = +3

Query: 540 FHHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSD---LLNQ 710
           ++H+A ET+    W K+ +LY  K+  NK++ +  L NL+Y +  SI  HL++   LL+Q
Sbjct: 70  YNHIANETHVRTLWEKIKSLYPSKSGNNKLYLLNYLMNLRYRESSSISDHLNEFQGLLDQ 129

Query: 711 LTTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRISI 890
           L  M I  DD+V GL+LL +LP++W+T  +++ NS PNG +++Q  K G LNEE RR + 
Sbjct: 130 LFGMGIKFDDEVLGLWLLNTLPESWETFRVSITNSAPNGVISLQAAKSGALNEEMRRKAQ 189

Query: 891 NLRS-DQALAMENKGRFKNRVQDSRG*SKSNNLSQ 992
              S  +    EN+ R + + +   G  KS + S+
Sbjct: 190 GSSSQSEVFVTENRERSQKK-EPKGGREKSRSKSK 223



 Score = 63.5 bits (153), Expect(3) = 2e-39
 Identities = 65/258 (25%), Positives = 105/258 (40%), Gaps = 15/258 (5%)
 Frame = +2

Query: 983  SKSR-DPMKCYYSGKVIHIKMYCRILKQERKTSKNKKDFVQNNMTAVTYEKVIVSLIHGH 1159
            SKSR   ++C+Y  K+ HI+    + K+E K  K                          
Sbjct: 222  SKSRYKNVECHYCHKIGHIQRNYFLWKKENKGKK-------------------------- 255

Query: 1160 GDYNHVRDPSIE*IINRGATYHCVSKRKLFTTYKVDT----KMENQNVSHIVGICDIIIE 1327
               N V D S+  I++ GAT H  ++++ FT+Y        K+ N  VS ++G+ D+ ++
Sbjct: 256  --VNLVSDESMW-IVDSGATLHVTTRKEFFTSYTFGDFGVLKIGNDGVSKVIGVGDVCLQ 312

Query: 1328 TNIWCTLTLRHMRHIPN-----FCLQCP**GRI**PIQG*IVEAP*RVCSSCKGIIILHN 1492
            TN+   L LR + H P+       +Q    G       G             KG +++  
Sbjct: 313  TNMGMQLLLRRVNHAPDVHFNLISVQILEDG-------GYDTHFGSGKWKLTKGNLVVAK 365

Query: 1493 V*DLAKAF*NHINIVQD-----DASPNLWHNTLTHMSEKEQQLLARQSHIHIPLAKGKGM 1657
              +++K F     + +D     D   +LWH  L+H+SEK    LA+       L   K  
Sbjct: 366  GEEISKLFWTKAMVAKDNVNAMDMEASLWHRKLSHISEKGLNCLAKND----VLQGLKSA 421

Query: 1658 TISSCDYCSLSKHISVSF 1711
             +  C +C   K   VSF
Sbjct: 422  ELEKCSHCMAGKQTRVSF 439



 Score = 42.7 bits (99), Expect(3) = 2e-39
 Identities = 21/39 (53%), Positives = 26/39 (66%)
 Frame = +1

Query: 1723 RKITKLELMHYVVCGPMEVESLGGNKYFVTFINDASGKL 1839
            RK   L L+H  VCGP++ +S  G  YFVTFI+D S KL
Sbjct: 446  RKSELLPLVHPDVCGPLKEKSFSGALYFVTFIDDCSRKL 484


>gb|KYP60452.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 367

 Score =  115 bits (289), Expect(2) = 2e-37
 Identities = 63/156 (40%), Positives = 97/156 (62%), Gaps = 5/156 (3%)
 Frame = +3

Query: 540 FHHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSDL---LNQ 710
           ++H+A ET++   W K+ +LY  K+  NK++ +  L NL+Y +  SI  HL++L   L+Q
Sbjct: 70  YNHIANETHARTLWEKIESLYASKSGNNKLYLLNCLMNLRYRESSSISDHLNELQGLLDQ 129

Query: 711 LTTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRISI 890
           L+ M I  DD+V GL LL +LP++W+T  +++ NS PNG V++Q  K G LNEE RR + 
Sbjct: 130 LSGMGIKFDDEVLGLRLLNTLPESWETFRVSITNSAPNGVVSLQAAKSGALNEEMRRKAQ 189

Query: 891 NLRS-DQALAMENKGRF-KNRVQDSRG*SKSNNLSQ 992
              S  + L  ENKGR  K  ++  R  S+S + S+
Sbjct: 190 GSSSQSEVLVTENKGRSRKKELKGGREKSRSKSKSK 225



 Score = 72.0 bits (175), Expect(2) = 2e-37
 Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 12/146 (8%)
 Frame = +2

Query: 983  SKSRDPMK---CYYSGKVIHIKMYCRILKQERKTSKNK---KDFVQNNM--TAVTYEKVI 1138
            SKS+   K   C+YS K  HI+  C + K+E +  K K   KD   ++   TA   + VI
Sbjct: 220  SKSKSKYKNVECHYSHKTGHIQRNCFMWKKENRGKKGKQKEKDHDDDDCVATATCGDLVI 279

Query: 1139 VSLIHGHGDYNHVRDPSIE*IINRGATYHCVSKRKLFTTYKVDT----KMENQNVSHIVG 1306
            +S    HG  N V D S+  I++ GAT H    ++ FT+Y        KM N  VS ++G
Sbjct: 280  LS---DHGSVNLVSDESMW-IVDSGATLHVTPWKEFFTSYTSGDFGVLKMGNDGVSKVIG 335

Query: 1307 ICDIIIETNIWCTLTLRHMRHIPNFC 1384
            + D+ ++TN+   L LR ++H P+ C
Sbjct: 336  VGDVFLQTNMGMQLLLRGVKHAPDVC 361


>gb|AAK29467.1| polyprotein-like [Solanum chilense]
          Length = 1328

 Score = 80.9 bits (198), Expect(4) = 5e-37
 Identities = 72/267 (26%), Positives = 114/267 (42%), Gaps = 18/267 (6%)
 Frame = +2

Query: 983  SKSRDPMKCYYSGKVIHIKMYCRILKQERKTSKNKKDFVQNNMTAVTYEKVIVSLIHGHG 1162
            SK+R+   CY   +  H K  C   K+ +  S  +K+   N    V     +V LI+   
Sbjct: 228  SKARN---CYNCDQPGHFKRDCPNPKRGKGESSGQKND-DNTAAMVQNNDDVVLLINEEE 283

Query: 1163 DYNHVRDPSIE*IINRGATYHCVSKRKLFTTYKV----DTKMENQNVSHIVGICDIIIET 1330
            +  H+     E +++  A+YH    R LF  Y      + KM N + S I GI DI  +T
Sbjct: 284  ECMHLAGTESEWVVDTAASYHATPVRDLFCRYVAGDYGNVKMGNTSYSKIAGIGDICFKT 343

Query: 1331 NIWCTLTLRHMRHIPNFCLQCP**GRI**PIQG*IVEA-------P*RVCSSCKGIIILH 1489
            N+ CTL L+ +RH+P+  +           I G  ++          +     KG +++ 
Sbjct: 344  NVGCTLVLKDVRHVPDLRMNL---------ISGIALDQDGYENYFANQKWRLTKGALVIA 394

Query: 1490 N-------V*DLAKAF*NHINIVQDDASPNLWHNTLTHMSEKEQQLLARQSHIHIPLAKG 1648
                        A+     +N   ++ S +LWH  + H SEK  Q+L+++S I       
Sbjct: 395  KGVARGTLYRTNAEICQGELNAAHEENSADLWHKRMGHTSEKGLQILSKKSLISFT---- 450

Query: 1649 KGMTISSCDYCSLSKHISVSFCLLKEK 1729
            KG TI  C+Y    K   VSF    E+
Sbjct: 451  KGTTIKPCNYWLFGKQHRVSFQTSSER 477



 Score = 59.3 bits (142), Expect(4) = 5e-37
 Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 7/157 (4%)
 Frame = +3

Query: 543 HHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKH---LSDLLNQL 713
           +++  E ++   W KL  LY  KT  NK++  ++L  L  ++  + + H   L+ L+ QL
Sbjct: 74  NNIVDEESACGIWTKLENLYMSKTLTNKLYLKKQLYTLHMDEGTNFLSHLNVLNGLITQL 133

Query: 714 TTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDG----FLNEEARR 881
             + + ++++   + LL SLP ++DTL  T++    +GK ++Q+ KD      LNE+ R+
Sbjct: 134 ANLGVKIEEEDKRIVLLNSLPSSYDTLSTTIL----HGKDSIQL-KDVTSALLLNEKMRK 188

Query: 882 ISINLRSDQALAMENKGRFKNRVQDSRG*SKSNNLSQ 992
              N    Q    E++GR   R   + G S +   S+
Sbjct: 189 KPEN--HGQVFITESRGRSYQRSSSNYGRSGARGKSK 223



 Score = 58.5 bits (140), Expect(4) = 5e-37
 Identities = 27/39 (69%), Positives = 33/39 (84%)
 Frame = +1

Query: 1723 RKITKLELMHYVVCGPMEVESLGGNKYFVTFINDASGKL 1839
            RK   L+L++  VCGPME+ES+GGNKYFVTFI+DAS KL
Sbjct: 477  RKSNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKL 515



 Score = 28.1 bits (61), Expect(4) = 5e-37
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 388 QKMEDHLYYSDLFDHILGDSAKPKDMSKDE*TRLDRKALGTIR 516
           ++M+D L    L   + G S KP+ M  ++   LD KA   IR
Sbjct: 23  RRMKDLLIQQGLHKALGGKSKKPESMKLEDWEELDEKAASAIR 65



 Score = 75.9 bits (185), Expect = 3e-10
 Identities = 43/82 (52%), Positives = 53/82 (64%)
 Frame = +3

Query: 1923 IFRYLQGTSKLCLGFRRSQAFLYGFTYSDMT*DIDSRKSTSKYLFTFIGGAMSLQSKLQK 2102
            I RYL+ T++    F  S     G+T  DM  D+D+RKST+ YLFTF GG +S QSKLQK
Sbjct: 1154 ILRYLRRTTRDYFCFEGSDPISKGYTNVDMEGDLDNRKSTTCYLFTFSGGDISWQSKLQK 1213

Query: 2103 CAALSTTEAEYIDATKASIEKL 2168
              ALSTTEA+YI  T+   E L
Sbjct: 1214 YVALSTTEAKYIAGTEVCKEML 1235


>gb|KYP53808.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 464

 Score = 85.9 bits (211), Expect(3) = 1e-36
 Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 5/124 (4%)
 Frame = +3

Query: 636 IRKLSNLKYNDERSIVKHLSDL---LNQLTTMKINLDDKVTGLFLLGSLPDTWDTLVITV 806
           ++    LKY +   I  HLS+     +QL  + I  DD + GLFLL SLPD+W+T  +++
Sbjct: 2   LKNFVELKYKEGTPISNHLSEFQGRYDQLAGVGIKFDDDLLGLFLLNSLPDSWETFRVSM 61

Query: 807 MNSTPNGKVTMQMVKDGFLNEEARRISINLRS-DQALAMENKGRFKNRVQDS-RG*SKSN 980
           +++TPNG +++QM K G LNEE RR +    S  + L  EN GR + + Q S R  S+S 
Sbjct: 62  ISATPNGDISLQMAKRGALNEEMRRKTRGTSSYSEVLVTENMGRSQKKEQKSGRDKSRSK 121

Query: 981 NLSQ 992
           ++S+
Sbjct: 122 SISR 125



 Score = 71.6 bits (174), Expect(3) = 1e-36
 Identities = 66/255 (25%), Positives = 113/255 (44%), Gaps = 18/255 (7%)
 Frame = +2

Query: 1001 MKCYYSGKVIHIKMYCRILKQERKTSKNKKDFVQNN----MTAVTYEKVIVSLIHGHGDY 1168
            ++C+Y  K+ HI+  C + K+E K  K K     +N    +T  T   ++   +  +   
Sbjct: 129  VECHYCHKIGHIQKNCFLWKKESKDKKGKHRERDHNDGDRVTTATCGDLVC--LRDYDIV 186

Query: 1169 NHVRDPSIE*IINRGATYHCVSKRKLFTTYKVDT----KMENQNVSHIVGICDIIIETNI 1336
            N V D S+  I++ GAT H  S+++ FT+Y        KM N  VS ++G+ D+ ++TN+
Sbjct: 187  NLVSDESMW-IVDSGATLHVTSRKEFFTSYTSGDFGVLKMGNDGVSKVIGVGDVCLQTNM 245

Query: 1337 WCTLTLRHMRHIPN-----FCLQCP**GRI**PIQG*IVEAP*RVCSSCKGIIILHNV*D 1501
               L L+ ++H+P+       +Q    G       G             KG +I+     
Sbjct: 246  GMQLLLKGVKHVPDVRFNLISVQVLDDG-------GYDNHFGSGKWKLTKGNLIVAKGEK 298

Query: 1502 LAKAF*NHINIVQDDAS-----PNLWHNTLTHMSEKEQQLLARQSHIHIPLAKGKGMTIS 1666
             +K +     + +D  +      +LWH  L H+SEK    LA++      L   K + + 
Sbjct: 299  NSKLYWTKALVAKDSVNAMYMESSLWHRRLGHISEKGMNCLAKKD----MLLGLKNVELE 354

Query: 1667 SCDYCSLSKHISVSF 1711
             C +C   K   VSF
Sbjct: 355  KCSHCMAGKQARVSF 369



 Score = 47.8 bits (112), Expect(3) = 1e-36
 Identities = 23/39 (58%), Positives = 28/39 (71%)
 Frame = +1

Query: 1723 RKITKLELMHYVVCGPMEVESLGGNKYFVTFINDASGKL 1839
            RK   LEL+H  VCGP++V+S  G  YFVTFI+D S KL
Sbjct: 376  RKSELLELVHSDVCGPLKVKSFNGALYFVTFIDDCSRKL 414


>gb|KYP53895.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 556

 Score =  110 bits (275), Expect(2) = 2e-36
 Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 4/155 (2%)
 Frame = +3

Query: 540 FHHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSDL---LNQ 710
           ++ ++ ET++   W+KL +LY  K+  NK++ ++    LKY +   I  HLS+     +Q
Sbjct: 63  YNFISNETHARSLWDKLESLYASKSGTNKLYLLKIFVELKYKEGTPISNHLSEFQGRYDQ 122

Query: 711 LTTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRISI 890
           L  + I  DD + GLFLL SLPD+W+T  ++++++TPNG +++QM K G LNEE RR + 
Sbjct: 123 LAGVGIKFDDDLLGLFLLNSLPDSWETFRVSMISATPNGDISLQMAKSGALNEEMRRRTH 182

Query: 891 NLRS-DQALAMENKGRFKNRVQDSRG*SKSNNLSQ 992
              S  + L +EN+GR + + Q S G  KS + S+
Sbjct: 183 GTSSYSEVLVIENRGRSQRKEQKS-GRDKSRSKSR 216



 Score = 73.6 bits (179), Expect(2) = 2e-36
 Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 21/264 (7%)
 Frame = +2

Query: 983  SKSRDPMK---CYYSGKVIHIKMYCRILKQERKTSKNKKDFVQNN----MTAVTYEKVIV 1141
            SKSR   K   C+Y  K+ HI+  C + K+E K  K K+    +N    +T  T   ++ 
Sbjct: 213  SKSRSRYKNVECHYCHKIGHIQKNCFLWKKESKDKKGKQRERDHNDGDRVTTATCGDLVC 272

Query: 1142 SLIHGHGDYNHVRDPSIE*IINRGATYHCVSKRKLFTTYKVDT----KMENQNVSHIVGI 1309
              +  +   N V D S+  I++ GAT H  S+++LFT+Y        KM N  VS ++G+
Sbjct: 273  --LRDYDIVNLVSDESMW-IVDSGATLHVTSRKELFTSYTPGDFGVLKMGNDGVSKVIGV 329

Query: 1310 CDIIIETNIWCTLTLRHMRHIPN-----FCLQCP**GRI**PIQG*IVEAP*RVCSSCKG 1474
             DI ++TN+   L LR ++H+P+       +Q    G       G             KG
Sbjct: 330  GDICLQTNMRMQLLLRGVKHVPDVRFNLISVQVLDDG-------GYDNHFGSGKWKLTKG 382

Query: 1475 IIILHNV*DLAKAF*NHINIVQDDAS-----PNLWHNTLTHMSEKEQQLLARQSHIHIPL 1639
             +I+      +K +     + +D  +      +LWH  L H++EK    LA++      L
Sbjct: 383  NLIVAKGEKNSKLYWTKALVAKDSVNAMYMESSLWHRRLGHINEKGLNCLAKKD----ML 438

Query: 1640 AKGKGMTISSCDYCSLSKHISVSF 1711
               K   +  C +C   K   VSF
Sbjct: 439  PGLKNAKLEKCSHCMAGKKTRVSF 462


>gb|PNX69237.1| hypothetical protein L195_g056606, partial [Trifolium pratense]
          Length = 208

 Score =  146 bits (368), Expect = 3e-36
 Identities = 77/152 (50%), Positives = 104/152 (68%), Gaps = 4/152 (2%)
 Frame = +3

Query: 540 FHHVAQETNSSVAWNKLVALYERKTAMNKVFAIRKLSNLKYNDERSIVKHLSD---LLNQ 710
           FHHVAQET +   W KL ALYERKTA NK   IR+L NLKY + RS+ +HLSD   L+NQ
Sbjct: 18  FHHVAQETVAYTLWKKLEALYERKTAQNKASTIRQLVNLKYRETRSVSEHLSDFQRLINQ 77

Query: 711 LTTMKINLDDKVTGLFLLGSLPDTWDTLVITVMNSTPNGKVTMQMVKDGFLNEEARRISI 890
           LT MK+ L+D++  L LL SLPD WDTLV+++ NS P G +T+ +VKD   NEE+RR   
Sbjct: 78  LTNMKMVLEDELQALLLLSSLPDNWDTLVVSLSNSAPQGVLTLDIVKDSMFNEESRRKEQ 137

Query: 891 NLRSD-QALAMENKGRFKNRVQDSRG*SKSNN 983
            + S+ +AL  E +GR  ++  ++R  S+ N+
Sbjct: 138 GMSSESEALVTEYRGRSIHKKFNTRDKSRGNS 169