BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00047767
         (1119 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOX99199.1| Copia-like pol polyprotein, putative [Theobroma c...    61   7e-07

>gb|EOX99199.1| Copia-like pol polyprotein, putative [Theobroma cacao]
          Length = 271

 Score = 61.2 bits (147), Expect = 7e-07
 Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 21/127 (16%)
 Frame = +3

Query: 756  VMYLISCTEDISYPLAHT*KDATKGEMHSIAHNKVWELI----------VNRTIRLRIQR 905
            VM L++  + I+YP +    D  K EM S+A N VWELI               R +   
Sbjct: 6    VMELVTFNDVINYPQSIIWIDTMKDEMSSMAQNGVWELIKLPKGCRLIGYKLVYRSKKDS 65

Query: 906  EN*KELRQGKLLRL-----------RNFLLICSKVYFHIIMPLVAHFDIEIHHIDMKIVF 1052
            E   E  + KL+               F  + SK ++ IIM  VAHFD+E+H +D+KI F
Sbjct: 66   ERKSERFKAKLVAKGFTQRDGVYYNETFSPVSSKGFYRIIMVFVAHFDLELHQMDVKIAF 125

Query: 1053 PKGNSNK 1073
              GN  K
Sbjct: 126  LNGNLEK 132