BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00047368
         (1009 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|PNY14098.1| putative copia-type protein, partial [Trifolium p...    55   6e-06

>gb|PNY14098.1| putative copia-type protein, partial [Trifolium pratense]
          Length = 129

 Score = 55.5 bits (132), Expect = 6e-06
 Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 14/83 (16%)
 Frame = -2

Query: 636 LLK*LWFHLKEPMTMHCVNQMAIYMQSNSFFHKRIKHIGMDC*FAR-------------- 499
           LLK L F    PMT+ C NQ A+++ SN  FH+RIKHI +DC F R              
Sbjct: 36  LLKELQFDNSRPMTLICDNQAALHIASNPVFHERIKHIEIDCHFVREKIESGDFVTSFVN 95

Query: 498 NINQLVDFFTNSLTPHLLLYVKV 430
           + +QL D FT SL    + Y+ V
Sbjct: 96  SNDQLADAFTKSLRGPRINYICV 118