BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00045247
         (1301 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_007761643.1| capsid protein [Rose yellow vein virus] >gi|...    83   9e-24
gb|AGA20432.1| coat protein, partial [Rose yellow vein virus] >g...    84   1e-14

>ref|YP_007761643.1| capsid protein [Rose yellow vein virus]
 gb|AFO54490.1| capsid protein [Rose yellow vein virus]
          Length = 498

 Score = 83.2 bits (204), Expect(3) = 9e-24
 Identities = 39/134 (29%), Positives = 70/134 (52%)
 Frame = +1

Query: 385 MNDKGVMLQSNGIKQXXXXXXXXXXXXXXTIGIHFNEWDPNKKLSYLENIHAGTARIAWE 564
           +NDKG++L  +                   +G+H  +W   ++L+Y EN   GTA++AW 
Sbjct: 164 INDKGIILYCDNPSTQMQEIDAWEAAMDIAVGLH-PQWTAQQRLAYAENTFQGTAKLAWN 222

Query: 565 AFKSTLGYPAFVTKFTSRNGQGSLMGDFFHMKICEISNKTFEQNRVKREVWQMLQKLRIC 744
           AFK ++ +  +   F +  G G  +     ++IC I +   E+ +++ +   +LQ LR+C
Sbjct: 223 AFKGSINFTNWYNVFIASGGLGKFITSTLRLEICGIESTDEEKLKLQEKAKHLLQTLRLC 282

Query: 745 DLSEIDKYNATFMR 786
           D+S +DKYN  F +
Sbjct: 283 DISMLDKYNVIFTK 296



 Score = 40.8 bits (94), Expect(3) = 9e-24
 Identities = 19/33 (57%), Positives = 21/33 (63%)
 Frame = +2

Query: 803 ELLRLYFSKLPPPWGKAMSNEYVEGEIDTIGLR 901
           E L  YFSKLPPP+ +    EYV  E DTIG R
Sbjct: 308 ETLNSYFSKLPPPFNEKAKKEYVSDEKDTIGKR 340



 Score = 36.6 bits (83), Expect(3) = 9e-24
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
 Frame = +3

Query: 912  VNQKLAAFCLDYRLKKASKFKTQTLCSNIETLGLKFSCSSK------------GLGSXXX 1055
            V   L  +C + RL   +K   + +C+      L   C  +               S   
Sbjct: 344  VQNILEQYCFERRLANVTKQSVKAICAKHNPPNLDIGCRQERSVFKHKRKRKFSKKSFRK 403

Query: 1056 XXXXXXXXXXXKRNQLVR*SRTTNKRLEKEVICWGCNQKGHYANNCNNKSKAE 1214
                       K+    +  +    +  K+V C+GC Q GHYAN C NK   E
Sbjct: 404  ISKNRFSKKKKKKPFFKKKRKGFKPKDPKKVKCFGCQQIGHYANKCPNKKGQE 456


>gb|AGA20432.1| coat protein, partial [Rose yellow vein virus]
 gb|AGA20433.1| coat protein, partial [Rose yellow vein virus]
          Length = 221

 Score = 83.6 bits (205), Expect = 1e-14
 Identities = 39/134 (29%), Positives = 70/134 (52%)
 Frame = +1

Query: 385 MNDKGVMLQSNGIKQXXXXXXXXXXXXXXTIGIHFNEWDPNKKLSYLENIHAGTARIAWE 564
           +NDKG++L  +                   +G+H  +W   ++L+Y EN   GTA++AW 
Sbjct: 67  INDKGIILYCDNPSTQMQEIAAWEAAMDIAVGLH-PQWTAQQRLAYAENTFQGTAKLAWN 125

Query: 565 AFKSTLGYPAFVTKFTSRNGQGSLMGDFFHMKICEISNKTFEQNRVKREVWQMLQKLRIC 744
           AFK ++ +  +   F +  G G  +     ++IC I +   E+ +++ +   +LQ LR+C
Sbjct: 126 AFKGSINFTNWYNTFIASGGLGKFITSTLRLEICGIESTDEEKLKLQEKAKHLLQTLRLC 185

Query: 745 DLSEIDKYNATFMR 786
           D+S +DKYN  F +
Sbjct: 186 DISMLDKYNVIFTK 199