BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00044594
         (4161 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_020676930.1| uncharacterized protein LOC110095647 [Dendro...   244   3e-66
gb|AET09699.1| putative coat protein, partial [Citrus yellow mos...   230   2e-65
gb|AND76971.1| polyprotein, partial [Fig badnavirus 1] >gi|10269...   224   8e-61
gb|AND76973.1| polyprotein, partial [Fig badnavirus 1]                224   1e-60
gb|AND76972.1| polyprotein, partial [Fig badnavirus 1]                219   4e-59
emb|CAA64272.1| unnamed protein product, partial [Dioscorea baci...   222   6e-58
ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]...   232   1e-57
gb|ACH86211.1| unknown [Citrus yellow mosaic virus]                   231   1e-57
gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]               231   2e-57
gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]               231   2e-57
ref|YP_009130664.1| polyprotein [Taro bacilliform CH virus] >gi|...   230   3e-57
ref|NP_569153.1| unknown [Citrus yellow mosaic virus] >gi|164169...   230   3e-57
gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]               230   4e-57
gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]               230   4e-57
gb|AER00544.1| ORF III [Citrus yellow mosaic virus]                   229   5e-57
ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discolor...   228   1e-56
gb|ANK58548.1| polyprotein [Fig badnavirus 1]                         228   1e-56
gb|ANK58545.1| polyprotein [Fig badnavirus 1]                         228   1e-56
gb|ANK58542.1| polyprotein [Fig badnavirus 1]                         228   1e-56
gb|ANK58539.1| polyprotein [Fig badnavirus 1]                         228   1e-56

>ref|XP_020676930.1| uncharacterized protein LOC110095647 [Dendrobium catenatum]
          Length = 517

 Score =  244 bits (623), Expect = 3e-66
 Identities = 110/153 (71%), Positives = 131/153 (85%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            +F LEDPYQGST +Q+EAYRD+ERLSCNNLKD+++F+N+YM++A KTGR+FT PE SEK 
Sbjct: 162  IFMLEDPYQGSTLIQDEAYRDIERLSCNNLKDVLQFMNEYMRIAAKTGRMFTSPERSEKF 221

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            WSK+P DLG RIK AF  +Y+GN +GV PRILFTY+YLENECK+A F RALK L FC+ I
Sbjct: 222  WSKLPGDLGSRIKMAFDTRYSGNQVGVIPRILFTYRYLENECKEATFHRALKGLQFCNQI 281

Query: 3342 HIPGYYRKPEKQYGARRSKTYKGKPHPSHARIE 3440
             IPGYY+KPEK+YG RRS TYKGKPH SHARIE
Sbjct: 282  PIPGYYKKPEKKYGIRRSTTYKGKPHNSHARIE 314



 Score =  134 bits (338), Expect = 4e-29
 Identities = 62/100 (62%), Positives = 78/100 (78%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            K+KHLIRNK C+CFLCGEEGHFARECPN+++++KRVA+FE +++ ADCEIVSV EGE  S
Sbjct: 315  KKKHLIRNKNCKCFLCGEEGHFARECPNDKKSIKRVAIFEGIDISADCEIVSVDEGEAES 374

Query: 3959 DAIYSITEGEDEEDISQNLNTIFHEHIYVFKEEERTWWIG 3840
            DAIYSI+EGED      N      E I  F+E +RT+W+G
Sbjct: 375  DAIYSISEGED-----ANEAYTIQETICYFRETDRTYWVG 409


>gb|AET09699.1| putative coat protein, partial [Citrus yellow mosaic virus]
          Length = 214

 Score =  230 bits (587), Expect = 2e-65
 Identities = 108/157 (68%), Positives = 136/157 (86%), Gaps = 2/157 (1%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VF LEDP  GSTA+Q+EAYRDLERL+C+++K I+++LND+M++A KTGR+F GPELSEKL
Sbjct: 26   VFPLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKL 85

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP DLG+R+K+A++EK+ GNI+GV PRILF YKYLE ECKDAAF+R+LK+LSFCS+I
Sbjct: 86   WLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSI 145

Query: 3342 HIPGYY--RKPEKQYGARRSKTYKGKPHPSHARIENS 3446
             IPGYY  R  EK+YG RR+ TYKGKPH +HARIE +
Sbjct: 146  PIPGYYGGRSSEKRYGIRRTTTYKGKPHNTHARIEKT 182



 Score = 68.9 bits (167), Expect = 4e-09
 Identities = 29/35 (82%), Positives = 33/35 (94%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKR 4035
            K KHL RNK+C+C+LCGEEGHFARECPN+RRNVKR
Sbjct: 181  KTKHL-RNKKCKCYLCGEEGHFARECPNDRRNVKR 214


>gb|AND76971.1| polyprotein, partial [Fig badnavirus 1]
 gb|AND76974.1| polyprotein, partial [Fig badnavirus 1]
          Length = 397

 Score =  224 bits (572), Expect = 8e-61
 Identities = 104/132 (78%), Positives = 121/132 (91%)
 Frame = -2

Query: 2978 NSKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCF 2799
            NSKI+SKFDLKSGFHQVAMHP+SIE TAFWVPD L+EWLVMPFGLKNA ++FQRKMD CF
Sbjct: 85   NSKIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMPFGLKNAPSVFQRKMDECF 144

Query: 2798 KGTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAV 2619
            KGTE FIAVYIDDILVFS++EK+  +HL+ MLEICK+NGL+LSP K+KIAV E+EFLGA 
Sbjct: 145  KGTEDFIAVYIDDILVFSENEKDPAKHLKAMLEICKRNGLVLSPSKMKIAVQEVEFLGAQ 204

Query: 2618 LGNQRIKLQPHI 2583
            +GNQRI+LQPH+
Sbjct: 205  IGNQRIRLQPHV 216


>gb|AND76973.1| polyprotein, partial [Fig badnavirus 1]
          Length = 397

 Score =  224 bits (571), Expect = 1e-60
 Identities = 104/132 (78%), Positives = 121/132 (91%)
 Frame = -2

Query: 2978 NSKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCF 2799
            NSKI+SKFDLKSGFHQVAMHP+SIE TAFWVPD L+EWLVMPFGLKNA ++FQRKMD CF
Sbjct: 85   NSKIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMPFGLKNAPSVFQRKMDECF 144

Query: 2798 KGTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAV 2619
            KGTE FIAVYIDDILVFS++EK+  +HL+ MLEICK+NGL+LSP K+KIAV E+EFLGA 
Sbjct: 145  KGTEDFIAVYIDDILVFSENEKDLAKHLKAMLEICKRNGLVLSPSKMKIAVQEVEFLGAQ 204

Query: 2618 LGNQRIKLQPHI 2583
            +GNQRI+LQPH+
Sbjct: 205  IGNQRIRLQPHV 216


>gb|AND76972.1| polyprotein, partial [Fig badnavirus 1]
          Length = 397

 Score =  219 bits (559), Expect = 4e-59
 Identities = 103/132 (78%), Positives = 120/132 (90%)
 Frame = -2

Query: 2978 NSKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCF 2799
            NSKI+SKFDLKSGFHQVAMHP+SIE TAFWVPD L+E LVMPFGLKNA ++FQRKMD CF
Sbjct: 85   NSKIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEGLVMPFGLKNAPSVFQRKMDECF 144

Query: 2798 KGTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAV 2619
            KGTE FIAVYIDDILVFS++EK+  +HL+ MLEICK+NGL+LSP K+KIAV E+EFLGA 
Sbjct: 145  KGTEDFIAVYIDDILVFSENEKDPAKHLKAMLEICKRNGLVLSPSKMKIAVQEVEFLGAQ 204

Query: 2618 LGNQRIKLQPHI 2583
            +GNQRI+LQPH+
Sbjct: 205  IGNQRIRLQPHV 216


>emb|CAA64272.1| unnamed protein product, partial [Dioscorea bacilliform virus]
 emb|CAA64273.1| unnamed protein product, partial [Dioscorea bacilliform virus]
          Length = 586

 Score =  222 bits (565), Expect = 6e-58
 Identities = 102/153 (66%), Positives = 125/153 (81%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            +FTLEDPY+GST +QE+AY  LER+SC ++KD+I FLN+YM+LA KTGRLF   ELS+K+
Sbjct: 49   IFTLEDPYRGSTTVQEQAYLHLERISCRDVKDLIPFLNEYMRLAAKTGRLFISTELSDKI 108

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W K+P DLGKRIK  F+E+Y GN IGV PRI+F YK+LE ECK+AAF R++K+L FCS I
Sbjct: 109  WMKLPGDLGKRIKTKFEEQYAGNTIGVHPRIMFIYKFLEEECKNAAFMRSMKNLQFCSKI 168

Query: 3342 HIPGYYRKPEKQYGARRSKTYKGKPHPSHARIE 3440
             IPGYY   EK+YG R+SKTYKGKPH SH RIE
Sbjct: 169  PIPGYYGGAEKKYGVRKSKTYKGKPHQSHVRIE 201



 Score =  117 bits (293), Expect = 3e-23
 Identities = 53/81 (65%), Positives = 67/81 (82%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            KRKHL R KRC+CFLCG+EGH+ARECPN+RR++KRV +FE L +P D +IVSV EGE+ S
Sbjct: 202  KRKHLTREKRCKCFLCGKEGHYARECPNDRRDIKRVQVFEGLSIPEDFDIVSVHEGEEQS 261

Query: 3959 DAIYSITEGEDEEDISQNLNT 3897
            DAIYS++EGE+ E I   +NT
Sbjct: 262  DAIYSVSEGEN-ESIDPEVNT 281


>ref|YP_009002585.1| polyprotein [Hibiscus bacilliform virus GD1]
 gb|AHI90954.1| polyprotein [Hibiscus bacilliform virus GD1]
          Length = 1892

 Score =  232 bits (591), Expect = 1e-57
 Identities = 109/153 (71%), Positives = 131/153 (85%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VFTLEDP  GSTA+Q+EAYRDLERLSC N+KDI+ FLNDY +LA K+GR+F  PELSEKL
Sbjct: 674  VFTLEDPTTGSTAVQDEAYRDLERLSCTNIKDIVSFLNDYARLAAKSGRMFISPELSEKL 733

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP DLG +I+ A++ K+ GN IGVFPRILFTYKYLE ECK+AAF+R+LK+LSFCS +
Sbjct: 734  WLKMPYDLGNKIRTAYEAKHEGNTIGVFPRILFTYKYLEQECKEAAFRRSLKNLSFCSEM 793

Query: 3342 HIPGYYRKPEKQYGARRSKTYKGKPHPSHARIE 3440
             +PGYY + +K+YG RRS TYKGKPHP+HARIE
Sbjct: 794  PLPGYYGE-KKRYGVRRSTTYKGKPHPTHARIE 825



 Score =  209 bits (533), Expect = 8e-51
 Identities = 100/132 (75%), Positives = 116/132 (87%)
 Frame = -2

Query: 2978 NSKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCF 2799
            ++KIYSKFDLKSGFHQVAMHPESI+ TAFWVPD L+EWLVMPFGLKNA A+FQRKMD  F
Sbjct: 1422 HAKIYSKFDLKSGFHQVAMHPESIKWTAFWVPDGLYEWLVMPFGLKNAPAVFQRKMDNVF 1481

Query: 2798 KGTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAV 2619
            KGTE FIAVYIDDILVFS SE+EH +H+R MLE C++NGL+LSP K+KIA  ++EFLGA+
Sbjct: 1482 KGTEAFIAVYIDDILVFSQSEEEHIKHIRVMLEKCRENGLVLSPTKMKIAQRKVEFLGAI 1541

Query: 2618 LGNQRIKLQPHI 2583
            L   RI+LQPHI
Sbjct: 1542 LEAGRIQLQPHI 1553



 Score =  159 bits (401), Expect = 3e-35
 Identities = 77/141 (54%), Positives = 98/141 (69%), Gaps = 1/141 (0%)
 Frame = -3

Query: 2587 IYVIPDIMLTIGDFFRNIQISIRT*GYESWQNGEANLLITRGLIGRLSNTPNAAFAYEVQ 2408
            IYV+PD M+TIGDF RNIQISI T GY +WQNGEANLL+TRG++GRLSNTPN AFAYE+ 
Sbjct: 194  IYVVPDTMMTIGDFARNIQISILTRGYSNWQNGEANLLVTRGIVGRLSNTPNVAFAYEIG 253

Query: 2407 GVVNYLISHGVNALPGRRYSTAQLQRLNWIIXXXXXXXXXXXTE-VNSQNLIDGHISISF 2231
             V +YL S GV A+ GRRY + +LQ   WI+            + V+++NLIDG IS+ F
Sbjct: 254  NVTDYLTSQGVQAIAGRRYDSRELQNQQWILRPPQVERLPQAPKNVDTRNLIDGSISLRF 313

Query: 2230 NNYTATPVIQPPRYNAHDEDI 2168
             +Y  T   + P YN  DE++
Sbjct: 314  RDYATTSTPELPSYNEQDEEV 334



 Score =  140 bits (353), Expect = 1e-29
 Identities = 71/131 (54%), Positives = 92/131 (70%), Gaps = 2/131 (1%)
 Frame = +2

Query: 953  YIGEESFNQL*RSRMQYLHIGVM*IRIQILHRQEEGTLALVLFRDNRWQGDRAIIATMEV 1132
            +I  ES   L R+ + ++HIG+M +R+QILHRQ EGT+ALV+FRD RW GD++I ATMEV
Sbjct: 126  FIQPESMEALQRTGISFIHIGIMQVRLQILHRQNEGTMALVVFRDTRWNGDQSIFATMEV 185

Query: 1133 DLTRGS*LIYVIPDIMLTIGDFFRNIQISIRTRGYESWQNDEEEIRHT--IVVLIEETEP 1306
            DLT G  +IYV+PD M+TIGDF RNIQISI TRGY +WQN E  +  T  IV  +  T  
Sbjct: 186  DLTEGRQIIYVVPDTMMTIGDFARNIQISILTRGYSNWQNGEANLLVTRGIVGRLSNTPN 245

Query: 1307 IFKVKLLGNTS 1339
            +     +GN +
Sbjct: 246  VAFAYEIGNVT 256



 Score =  123 bits (309), Expect = 2e-24
 Identities = 56/101 (55%), Positives = 78/101 (77%), Gaps = 1/101 (0%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            K+KHL+RNKRC+C+LCGE GHFARECPN+++N +RVAM+EQL +P   E+VSV+EGE+ S
Sbjct: 826  KQKHLVRNKRCKCYLCGEMGHFARECPNDKKNTRRVAMYEQLNIPEGFEVVSVEEGEEVS 885

Query: 3959 DAIYSITEGEDEEDISQNLNTIFHEHIYVFKE-EERTWWIG 3840
            DAI+SI+E EDE+ +  +    F E I++F E  +  +W G
Sbjct: 886  DAIFSISENEDEDAL--HTGGAFAETIFMFHEGTDNVYWAG 924



 Score =  108 bits (269), Expect = 1e-19
 Identities = 50/78 (64%), Positives = 61/78 (78%)
 Frame = +1

Query: 1945 IEQQIDPQQQLRLSMQERAAIAPAEVLYHSRRDDANHRVYMHRSEEAILCTDNQQVDRTF 2124
            +EQ++DPQ  L++SMQERA + PAEVLY SRRD  +HRVY HRSEEAILCTD  QVDRTF
Sbjct: 67   LEQEVDPQADLQMSMQERARLVPAEVLYRSRRDTIHHRVYSHRSEEAILCTDGNQVDRTF 126

Query: 2125 IGEESFNQLQRSRMQYLH 2178
            I  ES   LQR+ + ++H
Sbjct: 127  IQPESMEALQRTGISFIH 144



 Score = 83.2 bits (204), Expect = 5e-12
 Identities = 43/104 (41%), Positives = 65/104 (62%)
 Frame = -3

Query: 3796 VTSPCTNFLAYFILAAVAIDELELEEEDYFQIQESVYYSAGDSLAKFLSKIDLLL*KLRD 3617
            +T+  T  +A  +      DE+E +E ++ +   S    A     K  S    L+ +L+D
Sbjct: 1243 ITTIQTRLMAPIVEEDDEDDEVE-QETNWIRTMASSTMDA--PYEKLRSSFGPLMKELKD 1299

Query: 3616 QGFISEDALKHWARNKILCHMDIKNPDFIIEDRPLKHLTPQHAE 3485
            QG+I E+ +KHWARNK+LC++DIKNPD +IED+P+KH+TPQ  E
Sbjct: 1300 QGYIGENPMKHWARNKVLCYLDIKNPDMVIEDKPIKHVTPQMEE 1343


>gb|ACH86211.1| unknown [Citrus yellow mosaic virus]
          Length = 1490

 Score =  231 bits (589), Expect = 1e-57
 Identities = 108/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VF+LEDP  GSTA+Q+EAYRDLERL+C+++K I+++LND+M++A KTGR+F GPELSEKL
Sbjct: 271  VFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKL 330

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP DLG+R+K+A++EK+ GNI+GV PRILF YKYLE ECKDAAF+R+LK+LSFCS+I
Sbjct: 331  WLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSI 390

Query: 3342 HIPGYY--RKPEKQYGARRSKTYKGKPHPSHARIENS 3446
             IPGYY  R  EK+YG RR+ TYKGKPH +HARIE +
Sbjct: 391  PIPGYYGGRSGEKRYGVRRTTTYKGKPHNTHARIEKT 427



 Score =  212 bits (539), Expect = 1e-51
 Identities = 102/131 (77%), Positives = 114/131 (87%)
 Frame = -2

Query: 2975 SKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCFK 2796
            S I+SKFDLKSGF QVAMHP+S+E TAFWVP  L+EWLVMPFGLKNA A+FQRKMD CFK
Sbjct: 997  STIFSKFDLKSGFQQVAMHPDSVEWTAFWVPSGLYEWLVMPFGLKNAPAVFQRKMDHCFK 1056

Query: 2795 GTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAVL 2616
            GTE FIAVYIDDILVFS +EKEHEEHL+ ML IC++NGLILSP K+KIA  EIEFLGA++
Sbjct: 1057 GTEAFIAVYIDDILVFSKTEKEHEEHLQIMLSICQRNGLILSPTKMKIAQAEIEFLGAII 1116

Query: 2615 GNQRIKLQPHI 2583
             N  IKLQPHI
Sbjct: 1117 HNGLIKLQPHI 1127



 Score =  126 bits (316), Expect = 3e-25
 Identities = 63/101 (62%), Positives = 77/101 (76%), Gaps = 1/101 (0%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            K KHL RNK+C+C+LCGEEGHFARECP++RRNVKRVAMFE L+LP DCEIVS+ EGE  S
Sbjct: 426  KTKHL-RNKKCKCYLCGEEGHFARECPSDRRNVKRVAMFEGLDLPDDCEIVSIDEGEPDS 484

Query: 3959 DAIYSITEGEDEEDISQNLNTIFHEHIYVFKEE-ERTWWIG 3840
            DAI+SI+EGE+   I         E  +VF+EE   T+W+G
Sbjct: 485  DAIFSISEGEETGAI--------EEQCFVFQEECNGTYWLG 517



 Score = 90.9 bits (224), Expect = 2e-14
 Identities = 42/84 (50%), Positives = 58/84 (69%)
 Frame = -3

Query: 3736 ELELEEEDYFQIQESVYYSAGDSLAKFLSKIDLLL*KLRDQGFISEDALKHWARNKILCH 3557
            E EL  E++  IQE V YS       F  K   L+ +L+ QG+I E+ +K+WA+N+++CH
Sbjct: 834  EEELNLEEHRLIQEMVAYSTERPFVHFQQKFAGLIQELKAQGYIGEEPMKYWAKNRVVCH 893

Query: 3556 MDIKNPDFIIEDRPLKHLTPQHAE 3485
            +DIKNPD +IEDRPLKH+TPQ  E
Sbjct: 894  LDIKNPDMVIEDRPLKHVTPQMEE 917


>gb|ACB87150.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1976

 Score =  231 bits (589), Expect = 2e-57
 Identities = 108/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VF+LEDP  GSTA+Q+EAYRDLERL+C+++K I+++LND+M++A KTGR+F GPELSEKL
Sbjct: 755  VFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKL 814

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP DLG+R+K+A++EK+ GNI+GV PRILF YKYLE ECKDAAF+R+LK+LSFCS+I
Sbjct: 815  WLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSI 874

Query: 3342 HIPGYY--RKPEKQYGARRSKTYKGKPHPSHARIENS 3446
             IPGYY  R  EK+YG RR+ TYKGKPH +HARIE +
Sbjct: 875  PIPGYYGGRSSEKRYGIRRTTTYKGKPHNTHARIEKT 911



 Score =  213 bits (542), Expect = 7e-52
 Identities = 103/131 (78%), Positives = 114/131 (87%)
 Frame = -2

Query: 2975 SKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCFK 2796
            S I+SKFDLKSGFHQVAMHP+SIE TAFWVP  L+EWLVMPFGLKNA A+FQRKMD CFK
Sbjct: 1482 STIFSKFDLKSGFHQVAMHPDSIEWTAFWVPSGLYEWLVMPFGLKNAPAVFQRKMDHCFK 1541

Query: 2795 GTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAVL 2616
            GTE FIAVYIDDILVFS +E+EHEEHL+ ML IC+KNGLILSP K+KIA  EIEFLGA++
Sbjct: 1542 GTEAFIAVYIDDILVFSKTEREHEEHLQIMLSICQKNGLILSPTKMKIAQAEIEFLGAII 1601

Query: 2615 GNQRIKLQPHI 2583
                IKLQPHI
Sbjct: 1602 HKGLIKLQPHI 1612



 Score =  163 bits (412), Expect = 2e-36
 Identities = 77/141 (54%), Positives = 100/141 (70%), Gaps = 1/141 (0%)
 Frame = -3

Query: 2587 IYVIPDIMLTIGDFFRNIQISIRT*GYESWQNGEANLLITRGLIGRLSNTPNAAFAYEVQ 2408
            +Y+IPD M+T+ DF RN+QISI T  Y +WQNGEANLL+TRG++GRLSNTPN AFAY++Q
Sbjct: 190  VYIIPDTMMTVRDFCRNVQISILTKAYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQ 249

Query: 2407 GVVNYLISHGVNALPGRRYSTAQLQRLNWII-XXXXXXXXXXXTEVNSQNLIDGHISISF 2231
             V +YL+SHG+ ALPGRRYS A +Q   W +            T V+++N+IDG IS+ F
Sbjct: 250  NVTDYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRF 309

Query: 2230 NNYTATPVIQPPRYNAHDEDI 2168
            N+Y   P   P  YN HDE+I
Sbjct: 310  NSYQPAPDPAPVTYNQHDEEI 330



 Score =  134 bits (338), Expect = 9e-28
 Identities = 66/129 (51%), Positives = 89/129 (68%), Gaps = 15/129 (11%)
 Frame = +2

Query: 926  HHQVTMHA---------------IYIGEESFNQL*RSRMQYLHIGVM*IRIQILHRQEEG 1060
            HHQV +H                + I  ES  QL RS M ++++G++ +RIQILHRQ EG
Sbjct: 98   HHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFINMGIVQVRIQILHRQHEG 157

Query: 1061 TLALVLFRDNRWQGDRAIIATMEVDLTRGS*LIYVIPDIMLTIGDFFRNIQISIRTRGYE 1240
            T ALV+FRDNRWQGD++I ATME+DLT+G  ++Y+IPD M+T+ DF RN+QISI T+ Y 
Sbjct: 158  TTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKAYG 217

Query: 1241 SWQNDEEEI 1267
            +WQN E  +
Sbjct: 218  NWQNGEANL 226



 Score =  128 bits (322), Expect = 7e-26
 Identities = 63/101 (62%), Positives = 77/101 (76%), Gaps = 1/101 (0%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            K KHL RNK+C+C+LCGEEGHFARECPN+RRNVKRVAMFE L+LP DCEIVS+ EG+  S
Sbjct: 910  KTKHL-RNKKCKCYLCGEEGHFARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDPDS 968

Query: 3959 DAIYSITEGEDEEDISQNLNTIFHEHIYVFKEE-ERTWWIG 3840
            DAI+SI+EGE+           F E  +VF+EE   T+W+G
Sbjct: 969  DAIFSISEGEE--------TGAFEEQCFVFQEECNGTYWLG 1001



 Score = 98.2 bits (243), Expect = 1e-16
 Identities = 47/78 (60%), Positives = 58/78 (74%)
 Frame = +1

Query: 1945 IEQQIDPQQQLRLSMQERAAIAPAEVLYHSRRDDANHRVYMHRSEEAILCTDNQQVDRTF 2124
            +EQ +DP+  L+LSMQERA + PAEVLY SR DD +H+VY+HRSEEAILC D  QVDR  
Sbjct: 63   LEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLL 122

Query: 2125 IGEESFNQLQRSRMQYLH 2178
            I  ES  QL RS M +++
Sbjct: 123  IQPESAEQLNRSGMSFIN 140



 Score = 90.5 bits (223), Expect = 3e-14
 Identities = 45/101 (44%), Positives = 63/101 (62%)
 Frame = -3

Query: 3796 VTSPCTNFLAYFILAAVAIDELELEEEDYFQIQESVYYSAGDSLAKFLSKIDLLL*KLRD 3617
            +TS  T   A  +       E EL  E++  IQE V YS       F  K   L+ +L+ 
Sbjct: 1299 ITSINTRLAAPLLQQEEEEKEEELNLEEHRLIQEMVAYSTERPFVHFQQKFAGLIQELKA 1358

Query: 3616 QGFISEDALKHWARNKILCHMDIKNPDFIIEDRPLKHLTPQ 3494
            QG+I E+ +K+WA+N+++CH+DIKNPD +IEDRPLKH+TPQ
Sbjct: 1359 QGYIGEEPMKYWAKNQVVCHLDIKNPDMVIEDRPLKHVTPQ 1399


>gb|ACE76864.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1968

 Score =  231 bits (588), Expect = 2e-57
 Identities = 108/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VF+LEDP  GSTA+Q+EAYRDLERL+C+++K I+++LND+M++A KTGR+F GPELSEKL
Sbjct: 748  VFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKL 807

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP DLG+R+K+A++EK+ GNIIGV PRILF YKYLE ECKDAAF+R+LK+LSFCS+I
Sbjct: 808  WLKMPGDLGQRMKKAYEEKHPGNIIGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSI 867

Query: 3342 HIPGYY--RKPEKQYGARRSKTYKGKPHPSHARIENS 3446
             IPGYY  +  EK+YG RR+ TYKGKPH +HARIE +
Sbjct: 868  PIPGYYGGKSGEKRYGVRRTTTYKGKPHSTHARIEKT 904



 Score =  215 bits (547), Expect = 2e-52
 Identities = 103/131 (78%), Positives = 115/131 (87%)
 Frame = -2

Query: 2975 SKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCFK 2796
            S I+SKFDLKSGFHQVAMHP+S+E TAFWVP  L+EWLVMPFGLKNA A+FQRKMD CFK
Sbjct: 1475 STIFSKFDLKSGFHQVAMHPDSVEWTAFWVPSGLYEWLVMPFGLKNAPAVFQRKMDHCFK 1534

Query: 2795 GTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAVL 2616
            GTE FIAVYIDDILVFS +EKEHEEHL+ ML IC++NGLILSP K+KIA  EIEFLGA++
Sbjct: 1535 GTEAFIAVYIDDILVFSKTEKEHEEHLQIMLSICQRNGLILSPTKMKIAQAEIEFLGAII 1594

Query: 2615 GNQRIKLQPHI 2583
             N  IKLQPHI
Sbjct: 1595 HNGLIKLQPHI 1605



 Score =  165 bits (418), Expect = 3e-37
 Identities = 77/141 (54%), Positives = 102/141 (72%), Gaps = 1/141 (0%)
 Frame = -3

Query: 2587 IYVIPDIMLTIGDFFRNIQISIRT*GYESWQNGEANLLITRGLIGRLSNTPNAAFAYEVQ 2408
            +Y+IPD M+T+ DF RN+QISI T GY +WQNGEANLL+TRG++GRLSNTPN AFAY++Q
Sbjct: 190  VYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQ 249

Query: 2407 GVVNYLISHGVNALPGRRYSTAQLQRLNWII-XXXXXXXXXXXTEVNSQNLIDGHISISF 2231
             V +YL+SHG+ ALPGRRYS+A +Q   W +            T V+++N+IDG IS+ F
Sbjct: 250  NVTDYLVSHGIQALPGRRYSSADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRF 309

Query: 2230 NNYTATPVIQPPRYNAHDEDI 2168
            N+Y   P   P  YN HDE++
Sbjct: 310  NSYQPAPDPAPVAYNQHDEEV 330



 Score =  139 bits (351), Expect = 3e-29
 Identities = 68/129 (52%), Positives = 90/129 (69%), Gaps = 15/129 (11%)
 Frame = +2

Query: 926  HHQVTMHA---------------IYIGEESFNQL*RSRMQYLHIGVM*IRIQILHRQEEG 1060
            HHQV +H                + I  ES  QL RS M ++H+G++ +RIQILHRQ EG
Sbjct: 98   HHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEG 157

Query: 1061 TLALVLFRDNRWQGDRAIIATMEVDLTRGS*LIYVIPDIMLTIGDFFRNIQISIRTRGYE 1240
            T ALV+FRDNRWQGD++I ATME+DLT+G  ++Y+IPD M+T+ DF RN+QISI T+GY 
Sbjct: 158  TTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYG 217

Query: 1241 SWQNDEEEI 1267
            +WQN E  +
Sbjct: 218  NWQNGEANL 226



 Score =  126 bits (317), Expect = 3e-25
 Identities = 62/101 (61%), Positives = 77/101 (76%), Gaps = 1/101 (0%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            K KHL RNK+C+C+LCGEEGHFARECPN+RRNVKRVAMFE L+LP DCEIVS+ EG+  S
Sbjct: 903  KTKHL-RNKKCKCYLCGEEGHFARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDPDS 961

Query: 3959 DAIYSITEGEDEEDISQNLNTIFHEHIYVFKEE-ERTWWIG 3840
            DAI+SI+EGE+   +         E  +VF+EE   T+W+G
Sbjct: 962  DAIFSISEGEEAGTL--------EEQCFVFQEECNGTYWLG 994



 Score =  100 bits (250), Expect = 2e-17
 Identities = 48/78 (61%), Positives = 58/78 (74%)
 Frame = +1

Query: 1945 IEQQIDPQQQLRLSMQERAAIAPAEVLYHSRRDDANHRVYMHRSEEAILCTDNQQVDRTF 2124
            +EQ +DP+  L+LSMQERA + PAEVLY SR DD +H+VY+HRSEEAILC D  QVDR  
Sbjct: 63   LEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLL 122

Query: 2125 IGEESFNQLQRSRMQYLH 2178
            I  ES  QL RS M ++H
Sbjct: 123  IQPESAEQLNRSGMSFIH 140



 Score = 91.3 bits (225), Expect = 2e-14
 Identities = 46/104 (44%), Positives = 64/104 (61%)
 Frame = -3

Query: 3796 VTSPCTNFLAYFILAAVAIDELELEEEDYFQIQESVYYSAGDSLAKFLSKIDLLL*KLRD 3617
            +TS  T   A  +       E EL  E++  IQE V YS      +F  K   L+  L+ 
Sbjct: 1292 ITSINTRLAAPLLKQEEEEKEEELNLEEHRLIQEMVAYSTERPFVQFQQKFAGLIQDLKA 1351

Query: 3616 QGFISEDALKHWARNKILCHMDIKNPDFIIEDRPLKHLTPQHAE 3485
            QG+I E+ +K+WA+N+++CH+DIKNPD +IEDRPLKH+TPQ  E
Sbjct: 1352 QGYIGEEPMKYWAKNQVVCHLDIKNPDMVIEDRPLKHVTPQMEE 1395


>ref|YP_009130664.1| polyprotein [Taro bacilliform CH virus]
 gb|AKA45804.1| polyprotein [Taro bacilliform CH virus]
          Length = 1803

 Score =  230 bits (587), Expect = 3e-57
 Identities = 108/153 (70%), Positives = 132/153 (86%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VFTLEDPYQGST +QEEA RDLE+LSC+NLKDI+ ++N+YM+LA K+ RLF   +LSEK 
Sbjct: 662  VFTLEDPYQGSTTMQEEALRDLEKLSCHNLKDIVAYMNEYMRLACKSRRLFINADLSEKF 721

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP +LG RIK+A++ +Y GN IGVFPR+LF YK+LENEC+DAA+KR+LK+LSFCS+I
Sbjct: 722  WFKMPGELGPRIKEAYEARYPGNTIGVFPRVLFAYKFLENECRDAAYKRSLKNLSFCSSI 781

Query: 3342 HIPGYYRKPEKQYGARRSKTYKGKPHPSHARIE 3440
             IPGYY K EK+YG RRS+TYKGKPH SHARIE
Sbjct: 782  PIPGYY-KIEKKYGVRRSRTYKGKPHASHARIE 813



 Score =  214 bits (545), Expect = 3e-52
 Identities = 103/132 (78%), Positives = 115/132 (87%)
 Frame = -2

Query: 2978 NSKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCF 2799
            NSKIYSKFDLKSGFHQVAMHP SIE TAFWVP  L+EWL MPFGLKNA A+FQRKMD CF
Sbjct: 1387 NSKIYSKFDLKSGFHQVAMHPYSIEWTAFWVPQGLYEWLAMPFGLKNAPAVFQRKMDNCF 1446

Query: 2798 KGTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAV 2619
            KGTE FIAVYIDDILVFS++E+E+  HL  MLEICKKNGLILS  K+KIAV+ I+FLGA 
Sbjct: 1447 KGTENFIAVYIDDILVFSETEREYARHLEIMLEICKKNGLILSNSKMKIAVSTIDFLGAT 1506

Query: 2618 LGNQRIKLQPHI 2583
            +GN++IKLQ HI
Sbjct: 1507 IGNRKIKLQEHI 1518



 Score =  157 bits (397), Expect = 9e-35
 Identities = 79/142 (55%), Positives = 102/142 (71%), Gaps = 2/142 (1%)
 Frame = -3

Query: 2587 IYVIPDIMLTIGDFFRNIQISIRT*GYESWQNGEANLLITRGLIGRLSNTPNAAFAYEVQ 2408
            +YVIP+ M+TIGDF+ N+Q+SI T GYE+W+ GEANLLITRGL+GRLSNTPN  FAYEVQ
Sbjct: 190  VYVIPNTMMTIGDFYNNVQVSILTRGYEAWR-GEANLLITRGLVGRLSNTPNVGFAYEVQ 248

Query: 2407 GVVNYLISHGVNALPGRRYSTAQLQRLNWIIXXXXXXXXXXXTEVNSQNLIDGHISISFN 2228
             VV+YL+SHGV A+PGRR +  +LQ  NW++           TEV+++  IDG IS+ F 
Sbjct: 249  SVVDYLVSHGVQAIPGRRRTVQELQGYNWVVRPTQASIPRQPTEVDTRTNIDGTISLRFG 308

Query: 2227 NYTA--TPVIQPPRYNAHDEDI 2168
            NYT+  T   +   YN  DE+I
Sbjct: 309  NYTSARTSTTRRIAYNLRDEEI 330



 Score =  155 bits (391), Expect = 5e-34
 Identities = 66/105 (62%), Positives = 92/105 (87%), Gaps = 1/105 (0%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            +RKHL RNKRC+C+LCG+EGHFARECPN+RR++KRVA+FE L+LP DC+IVSVQEG++ S
Sbjct: 814  RRKHLQRNKRCKCYLCGQEGHFARECPNDRRSIKRVAIFENLDLPEDCDIVSVQEGDNES 873

Query: 3959 DAIYSITEGEDEEDISQNLNTI-FHEHIYVFKEEERTWWIGPSAF 3828
            DAIY+I+EGE+ ED++++LN +   EH+Y F+EE++T+WIG   +
Sbjct: 874  DAIYNISEGEEMEDLTKSLNVMSVSEHLYYFREEDQTYWIGGEGY 918



 Score =  148 bits (374), Expect = 5e-32
 Identities = 72/125 (57%), Positives = 94/125 (75%), Gaps = 15/125 (12%)
 Frame = +2

Query: 926  HHQVTMHA---------------IYIGEESFNQL*RSRMQYLHIGVM*IRIQILHRQEEG 1060
            HH+V +H                I+I EESF QL RSRMQ++HIGV+ +RIQ LHR +EG
Sbjct: 98   HHRVYVHRSEEALLCTDNQQQDRIFIQEESFKQLQRSRMQFIHIGVIQLRIQALHRHDEG 157

Query: 1061 TLALVLFRDNRWQGDRAIIATMEVDLTRGS*LIYVIPDIMLTIGDFFRNIQISIRTRGYE 1240
            TLALV+FRDNRW  DR++ ATMEVDL++GS L+YVIP+ M+TIGDF+ N+Q+SI TRGYE
Sbjct: 158  TLALVVFRDNRWPDDRSLFATMEVDLSQGSQLVYVIPNTMMTIGDFYNNVQVSILTRGYE 217

Query: 1241 SWQND 1255
            +W+ +
Sbjct: 218  AWRGE 222



 Score =  128 bits (321), Expect = 8e-26
 Identities = 62/78 (79%), Positives = 68/78 (87%)
 Frame = +1

Query: 1945 IEQQIDPQQQLRLSMQERAAIAPAEVLYHSRRDDANHRVYMHRSEEAILCTDNQQVDRTF 2124
            +EQQIDPQ  LR SMQERAAI PAEVLYHSR DD +HRVY+HRSEEA+LCTDNQQ DR F
Sbjct: 63   LEQQIDPQVHLRNSMQERAAIVPAEVLYHSRCDDEHHRVYVHRSEEALLCTDNQQQDRIF 122

Query: 2125 IGEESFNQLQRSRMQYLH 2178
            I EESF QLQRSRMQ++H
Sbjct: 123  IQEESFKQLQRSRMQFIH 140



 Score = 88.6 bits (218), Expect = 1e-13
 Identities = 40/84 (47%), Positives = 56/84 (66%)
 Frame = -3

Query: 3745 AIDELELEEEDYFQIQESVYYSAGDSLAKFLSKIDLLL*KLRDQGFISEDALKHWARNKI 3566
            AI+ELELEEE+Y  I     Y   +  + F      L+ +L+D G+I +D +K+W+ NKI
Sbjct: 1222 AIEELELEEEEYISIATICAYGGMEISSPFQFSYQKLIQELKDMGYIGDDPMKYWSSNKI 1281

Query: 3565 LCHMDIKNPDFIIEDRPLKHLTPQ 3494
             C ++IKNPD  IEDRPLKH++PQ
Sbjct: 1282 TCQLEIKNPDLTIEDRPLKHISPQ 1305


>ref|NP_569153.1| unknown [Citrus yellow mosaic virus]
 gb|AAL18495.1|AF347695_3 unknown [Citrus yellow mosaic virus]
          Length = 1983

 Score =  230 bits (587), Expect = 3e-57
 Identities = 107/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VF+LEDP  GSTA+Q+EAYRDLERL+C+++K I+++LND+M++A KTGR+F GPELSEKL
Sbjct: 763  VFSLEDPTTGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKL 822

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP DLG+R+K+A++EK+ GNI+GV PRILF YKYLE ECKDAAF+R+LK+LSFCS+I
Sbjct: 823  WLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSI 882

Query: 3342 HIPGYY--RKPEKQYGARRSKTYKGKPHPSHARIENS 3446
             IPGYY  +  EK+YG RR+ TYKGKPH +HARIE +
Sbjct: 883  PIPGYYGGKSGEKRYGVRRTTTYKGKPHSTHARIEKT 919



 Score =  210 bits (534), Expect = 6e-51
 Identities = 102/131 (77%), Positives = 114/131 (87%)
 Frame = -2

Query: 2975 SKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCFK 2796
            S I+SKFDLKSGFHQVAMHP+SIE TAFWVP  L+EWLVMPFGLKNA AIFQRKMD CFK
Sbjct: 1490 STIFSKFDLKSGFHQVAMHPDSIEWTAFWVPSGLYEWLVMPFGLKNAPAIFQRKMDHCFK 1549

Query: 2795 GTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAVL 2616
            GTE FIAVYIDDILVFS +E++HE+HL+ ML IC+KNGLILSP K+KIA  EIEFLGA++
Sbjct: 1550 GTEAFIAVYIDDILVFSKTEQDHEKHLQIMLAICQKNGLILSPTKMKIAQAEIEFLGAII 1609

Query: 2615 GNQRIKLQPHI 2583
                IKLQPHI
Sbjct: 1610 HKGLIKLQPHI 1620



 Score =  167 bits (423), Expect = 8e-38
 Identities = 78/141 (55%), Positives = 102/141 (72%), Gaps = 1/141 (0%)
 Frame = -3

Query: 2587 IYVIPDIMLTIGDFFRNIQISIRT*GYESWQNGEANLLITRGLIGRLSNTPNAAFAYEVQ 2408
            +Y+IPD M+T+ DF RN+QISI T GY +WQNGEANLL+TRG++GRLSNTPN AFAY++Q
Sbjct: 190  VYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQ 249

Query: 2407 GVVNYLISHGVNALPGRRYSTAQLQRLNWII-XXXXXXXXXXXTEVNSQNLIDGHISISF 2231
             V +YL+SHG+ ALPGRRYSTA +Q   W +            T V+++N+IDG IS+ F
Sbjct: 250  NVTDYLVSHGIQALPGRRYSTADIQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRF 309

Query: 2230 NNYTATPVIQPPRYNAHDEDI 2168
            N+Y   P   P  YN HDE++
Sbjct: 310  NSYQPAPDPTPVAYNQHDEEV 330



 Score =  139 bits (351), Expect = 3e-29
 Identities = 68/129 (52%), Positives = 90/129 (69%), Gaps = 15/129 (11%)
 Frame = +2

Query: 926  HHQVTMHA---------------IYIGEESFNQL*RSRMQYLHIGVM*IRIQILHRQEEG 1060
            HHQV +H                + I  ES  QL RS M ++H+G++ +RIQILHRQ EG
Sbjct: 98   HHQVYIHKSEEAILCVDGDQVDRLLIQPESAEQLSRSGMSFIHMGIVQVRIQILHRQHEG 157

Query: 1061 TLALVLFRDNRWQGDRAIIATMEVDLTRGS*LIYVIPDIMLTIGDFFRNIQISIRTRGYE 1240
            T ALV+FRDNRWQGD++I ATME+DLT+G  ++Y+IPD M+T+ DF RN+QISI T+GY 
Sbjct: 158  TTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYG 217

Query: 1241 SWQNDEEEI 1267
            +WQN E  +
Sbjct: 218  NWQNGEANL 226



 Score =  126 bits (317), Expect = 3e-25
 Identities = 62/101 (61%), Positives = 77/101 (76%), Gaps = 1/101 (0%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            K KHL RNK+C+C+LCGEEGHFARECPN+RRNVKRVAMFE L+LP DCEIVS+ EG+  S
Sbjct: 918  KTKHL-RNKKCKCYLCGEEGHFARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDPDS 976

Query: 3959 DAIYSITEGEDEEDISQNLNTIFHEHIYVFKEE-ERTWWIG 3840
            DAI+SI+EGE+   +         E  +VF+EE   T+W+G
Sbjct: 977  DAIFSISEGEEAGTL--------EEQCFVFQEECNGTYWLG 1009



 Score = 99.8 bits (247), Expect = 4e-17
 Identities = 47/78 (60%), Positives = 58/78 (74%)
 Frame = +1

Query: 1945 IEQQIDPQQQLRLSMQERAAIAPAEVLYHSRRDDANHRVYMHRSEEAILCTDNQQVDRTF 2124
            +EQ +DP+  L+LSMQERA + PAEVLY SR DD +H+VY+H+SEEAILC D  QVDR  
Sbjct: 63   LEQVVDPEVALQLSMQERARLVPAEVLYRSRTDDRHHQVYIHKSEEAILCVDGDQVDRLL 122

Query: 2125 IGEESFNQLQRSRMQYLH 2178
            I  ES  QL RS M ++H
Sbjct: 123  IQPESAEQLSRSGMSFIH 140



 Score = 91.3 bits (225), Expect = 2e-14
 Identities = 46/104 (44%), Positives = 64/104 (61%)
 Frame = -3

Query: 3796 VTSPCTNFLAYFILAAVAIDELELEEEDYFQIQESVYYSAGDSLAKFLSKIDLLL*KLRD 3617
            +TS  T   A  +       E EL  E++  IQE V YS      +F  K   L+  L+ 
Sbjct: 1307 ITSINTRLAAPLLKQEEEEKEEELNLEEHRLIQEMVAYSTERPFVQFQQKFAGLIQDLKA 1366

Query: 3616 QGFISEDALKHWARNKILCHMDIKNPDFIIEDRPLKHLTPQHAE 3485
            QG+I E+ +K+WA+N+++CH+DIKNPD +IEDRPLKH+TPQ  E
Sbjct: 1367 QGYIGEEPMKYWAKNQVVCHLDIKNPDMVIEDRPLKHVTPQMEE 1410


>gb|ACE76858.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1967

 Score =  230 bits (586), Expect = 4e-57
 Identities = 108/157 (68%), Positives = 136/157 (86%), Gaps = 2/157 (1%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VF+LEDP  GSTA+Q+EAYRDLERL+C+++K I+++LND+M++A KTGR F GPELSEKL
Sbjct: 747  VFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRTFIGPELSEKL 806

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP DLG+R+K+A++EK+ GNI+GV PRILF YKYLE ECKDAAF+R+LK+LSFCS+I
Sbjct: 807  WLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSI 866

Query: 3342 HIPGYY--RKPEKQYGARRSKTYKGKPHPSHARIENS 3446
             IPGYY  R  EK+YG RR+ TYKGKPH +HARIE +
Sbjct: 867  PIPGYYGGRSGEKRYGVRRTTTYKGKPHNTHARIEKT 903



 Score =  216 bits (551), Expect = 6e-53
 Identities = 105/131 (80%), Positives = 115/131 (87%)
 Frame = -2

Query: 2975 SKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCFK 2796
            S I+SKFDLKSGFHQVAMHP+SIE TAFWVP  L+EWLVMPFGLKNA A+FQRKMD CFK
Sbjct: 1474 STIFSKFDLKSGFHQVAMHPDSIEWTAFWVPSGLYEWLVMPFGLKNAPAVFQRKMDHCFK 1533

Query: 2795 GTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAVL 2616
            GTE FIAVYIDDILVFS SE+EHEEHL+ ML IC+KNGLILSP K+KIA  EIEFLGA++
Sbjct: 1534 GTEAFIAVYIDDILVFSKSEREHEEHLKIMLSICQKNGLILSPTKMKIAQVEIEFLGAII 1593

Query: 2615 GNQRIKLQPHI 2583
             N  IKLQPHI
Sbjct: 1594 HNGLIKLQPHI 1604



 Score =  160 bits (405), Expect = 1e-35
 Identities = 77/141 (54%), Positives = 99/141 (70%), Gaps = 1/141 (0%)
 Frame = -3

Query: 2587 IYVIPDIMLTIGDFFRNIQISIRT*GYESWQNGEANLLITRGLIGRLSNTPNAAFAYEVQ 2408
            +Y+IPD M+T+ DF RN+QISI T GY +WQNGEANLL+TRG++GRLSNTP  AFAY++Q
Sbjct: 190  VYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPIVAFAYQIQ 249

Query: 2407 GVVNYLISHGVNALPGRRYSTAQLQRLNWII-XXXXXXXXXXXTEVNSQNLIDGHISISF 2231
             V +YL+SHG+ ALPGRRYS A +Q   W +            T V ++N+IDG IS+ F
Sbjct: 250  NVTDYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPADPMAPTNVATRNMIDGSISLRF 309

Query: 2230 NNYTATPVIQPPRYNAHDEDI 2168
            N+Y   P   P  YN HDE+I
Sbjct: 310  NSYQPAPDPAPIAYNQHDEEI 330



 Score =  144 bits (363), Expect = 1e-30
 Identities = 110/330 (33%), Positives = 160/330 (48%), Gaps = 15/330 (4%)
 Frame = +2

Query: 926  HHQVTMHA---------------IYIGEESFNQL*RSRMQYLHIGVM*IRIQILHRQEEG 1060
            HHQV +H                + I  ES  QL RS M ++H+G++ +RIQILHRQ EG
Sbjct: 98   HHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFIHMGIVQVRIQILHRQHEG 157

Query: 1061 TLALVLFRDNRWQGDRAIIATMEVDLTRGS*LIYVIPDIMLTIGDFFRNIQISIRTRGYE 1240
            T ALV+FRDNRWQGD++I ATME+DLT+G  ++Y+IPD M+T+ DF RN+QISI T+GY 
Sbjct: 158  TTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYG 217

Query: 1241 SWQNDEEEIRHTIVVLIEETEPIFKVKLLGNTSLPPVRKTSGSAAYDLAS*GNYIINPRG 1420
            +WQN E  +  T  +          V  L NT +        + AY + +  +Y+++   
Sbjct: 218  NWQNGEANLLVTRGI----------VGRLSNTPIV-------AFAYQIQNVTDYLVSHGI 260

Query: 1421 KTLVAIGIAVAIPQGYYGQIAVRSSAAIKLGIQAGAGVIDADYRGELKILLFNQTNHTVI 1600
            + L     + A  QG   Q  +R S             I AD      +   N  + ++ 
Sbjct: 261  QALPGRRYSAADVQGQ--QWFLRPSN------------IPADPMAPTNVATRNMIDGSIS 306

Query: 1601 IKQGYYFAQIILEKXXXXXXXXXDSLDETIRGEQGFGSTDPADQNKDITITPCESNRQRE 1780
            ++   Y      +          +  DE I          P D+++       E  R   
Sbjct: 307  LRFNSY------QPAPDPAPIAYNQHDEEI----------PPDEDE-------EQIRNHI 343

Query: 1781 ELLLRPINRHKI*DTLGEPSEKYDYYVNYS 1870
              L R  N  ++ DTLGEPS K+D+YV Y+
Sbjct: 344  TALWREDN--EVWDTLGEPSGKFDFYVRYT 371



 Score =  127 bits (318), Expect = 2e-25
 Identities = 63/101 (62%), Positives = 77/101 (76%), Gaps = 1/101 (0%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            K KHL RNK+C+C+LCGEEGHFARECPN+RRNVKRVAMFE L+LP DCEIVS+ EG+  S
Sbjct: 902  KTKHL-RNKKCKCYLCGEEGHFARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDPDS 960

Query: 3959 DAIYSITEGEDEEDISQNLNTIFHEHIYVFKEE-ERTWWIG 3840
            DAI+SI+EGE+   I         E  +VF+EE   T+W+G
Sbjct: 961  DAIFSISEGEETGAI--------EEQCFVFQEECNGTYWLG 993



 Score =  101 bits (251), Expect = 1e-17
 Identities = 48/78 (61%), Positives = 58/78 (74%)
 Frame = +1

Query: 1945 IEQQIDPQQQLRLSMQERAAIAPAEVLYHSRRDDANHRVYMHRSEEAILCTDNQQVDRTF 2124
            +EQ +DP+  L+LSMQERA + PAEVLY SR DD +H+VY+HRSEEAILC D  QVDR  
Sbjct: 63   LEQVVDPEVALQLSMQERARLVPAEVLYRSRNDDRHHQVYIHRSEEAILCVDGDQVDRLL 122

Query: 2125 IGEESFNQLQRSRMQYLH 2178
            I  ES  QL RS M ++H
Sbjct: 123  IQPESAEQLNRSGMSFIH 140



 Score = 91.3 bits (225), Expect = 2e-14
 Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 4/89 (4%)
 Frame = -3

Query: 3739 DELELEEE----DYFQIQESVYYSAGDSLAKFLSKIDLLL*KLRDQGFISEDALKHWARN 3572
            DE E EEE    ++  IQE V YS       F  K   L+ +L+ QG+I E+ +K+WA+N
Sbjct: 1306 DEEEKEEELNLDEHRLIQEMVAYSTERPFVHFQQKFAGLIQELKAQGYIGEEPMKYWAKN 1365

Query: 3571 KILCHMDIKNPDFIIEDRPLKHLTPQHAE 3485
            K++CH+DIKNPD +IEDRPLKH+TPQ  E
Sbjct: 1366 KVVCHLDIKNPDMVIEDRPLKHVTPQMEE 1394


>gb|ACB87156.1| polyprotein [Citrus yellow mosaic virus]
          Length = 1979

 Score =  230 bits (586), Expect = 4e-57
 Identities = 107/157 (68%), Positives = 137/157 (87%), Gaps = 2/157 (1%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VF+LEDP  GSTA+Q+EAYRDLERL+C+++K I+++LND+M++A KTGR+F GPELSEKL
Sbjct: 755  VFSLEDPATGSTAVQDEAYRDLERLTCDSVKHIVQYLNDFMRIAAKTGRMFIGPELSEKL 814

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP DLG+R+K+A++EK+ GNI+GV PRILF YKYLE ECKDAAF+R+LK+LSFCS+I
Sbjct: 815  WLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSI 874

Query: 3342 HIPGYY--RKPEKQYGARRSKTYKGKPHPSHARIENS 3446
             IPGYY  R  E++YG RR+ TYKGKPH +HARIE +
Sbjct: 875  PIPGYYGGRSSERRYGIRRTTTYKGKPHNTHARIEKT 911



 Score =  210 bits (535), Expect = 5e-51
 Identities = 102/131 (77%), Positives = 113/131 (86%)
 Frame = -2

Query: 2975 SKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCFK 2796
            S I+SKFDLKSGFHQVAMHP+SIE TAFWVP  L+EWLVMPFGLKNA A+FQRKMD CFK
Sbjct: 1484 STIFSKFDLKSGFHQVAMHPDSIEWTAFWVPSGLYEWLVMPFGLKNAPAVFQRKMDHCFK 1543

Query: 2795 GTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAVL 2616
            GTE FIAVYIDDILVFS +E+EHEEHL+ ML IC+KNGLILSP K+KIA  EIEF GA++
Sbjct: 1544 GTEAFIAVYIDDILVFSKTEREHEEHLQIMLSICQKNGLILSPTKMKIAQAEIEFPGAII 1603

Query: 2615 GNQRIKLQPHI 2583
                IKLQPHI
Sbjct: 1604 HKGLIKLQPHI 1614



 Score =  165 bits (418), Expect = 3e-37
 Identities = 78/141 (55%), Positives = 101/141 (71%), Gaps = 1/141 (0%)
 Frame = -3

Query: 2587 IYVIPDIMLTIGDFFRNIQISIRT*GYESWQNGEANLLITRGLIGRLSNTPNAAFAYEVQ 2408
            +Y+IPD M+T+ DF RN+QISI T GY +WQNGEANLL+TRG++GRLSNTPN AFAY++Q
Sbjct: 190  VYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQ 249

Query: 2407 GVVNYLISHGVNALPGRRYSTAQLQRLNWII-XXXXXXXXXXXTEVNSQNLIDGHISISF 2231
             V +YL+SHG+ ALPGRRYS A +Q   W +            T V+++N+IDG IS+ F
Sbjct: 250  NVTDYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRF 309

Query: 2230 NNYTATPVIQPPRYNAHDEDI 2168
            N+Y   P   P  YN HDE+I
Sbjct: 310  NSYQPAPDPAPVAYNQHDEEI 330



 Score =  137 bits (344), Expect = 2e-28
 Identities = 67/129 (51%), Positives = 90/129 (69%), Gaps = 15/129 (11%)
 Frame = +2

Query: 926  HHQVTMHA---------------IYIGEESFNQL*RSRMQYLHIGVM*IRIQILHRQEEG 1060
            HHQV +H                + I  ES  QL RS M ++++G++ +RIQILHRQ EG
Sbjct: 98   HHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRSGMSFINMGIVQVRIQILHRQHEG 157

Query: 1061 TLALVLFRDNRWQGDRAIIATMEVDLTRGS*LIYVIPDIMLTIGDFFRNIQISIRTRGYE 1240
            T ALV+FRDNRWQGD++I ATME+DLT+G  ++Y+IPD M+T+ DF RN+QISI T+GY 
Sbjct: 158  TTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYG 217

Query: 1241 SWQNDEEEI 1267
            +WQN E  +
Sbjct: 218  NWQNGEANL 226



 Score =  128 bits (322), Expect = 7e-26
 Identities = 63/101 (62%), Positives = 77/101 (76%), Gaps = 1/101 (0%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            K KHL RNK+C+C+LCGEEGHFARECPN+RRNVKRVAMFE L+LP DCEIVS+ EG+  S
Sbjct: 910  KTKHL-RNKKCKCYLCGEEGHFARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDPDS 968

Query: 3959 DAIYSITEGEDEEDISQNLNTIFHEHIYVFKEE-ERTWWIG 3840
            DAI+SI+EGE+           F E  +VF+EE   T+W+G
Sbjct: 969  DAIFSISEGEE--------TGAFEEQCFVFQEECNGTYWLG 1001



 Score = 98.2 bits (243), Expect = 1e-16
 Identities = 47/78 (60%), Positives = 58/78 (74%)
 Frame = +1

Query: 1945 IEQQIDPQQQLRLSMQERAAIAPAEVLYHSRRDDANHRVYMHRSEEAILCTDNQQVDRTF 2124
            +EQ +DP+  L+LSMQERA + PAEVLY SR DD +H+VY+HRSEEAILC D  QVDR  
Sbjct: 63   LEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLL 122

Query: 2125 IGEESFNQLQRSRMQYLH 2178
            I  ES  QL RS M +++
Sbjct: 123  IQPESAEQLNRSGMSFIN 140



 Score = 90.5 bits (223), Expect = 3e-14
 Identities = 42/84 (50%), Positives = 58/84 (69%)
 Frame = -3

Query: 3736 ELELEEEDYFQIQESVYYSAGDSLAKFLSKIDLLL*KLRDQGFISEDALKHWARNKILCH 3557
            E EL  E++  IQE V YS       F  K   L+ +L+ QG+I E+ +K+WA+N+++CH
Sbjct: 1321 EEELNLEEHRLIQEMVAYSTERPFVHFQQKFAGLIQELKAQGYIGEEPMKYWAKNQVVCH 1380

Query: 3556 MDIKNPDFIIEDRPLKHLTPQHAE 3485
            +DIKNPD +IEDRPLKH+TPQ  E
Sbjct: 1381 LDIKNPDMVIEDRPLKHVTPQMEE 1404


>gb|AER00544.1| ORF III [Citrus yellow mosaic virus]
          Length = 1976

 Score =  229 bits (585), Expect = 5e-57
 Identities = 108/157 (68%), Positives = 136/157 (86%), Gaps = 2/157 (1%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VF+LEDP  GSTA+Q+EAYRDLERL+C+ +K I+++LND+M++A KTGR+F GPELSEKL
Sbjct: 755  VFSLEDPATGSTAVQDEAYRDLERLTCDLVKHIVQYLNDFMRIAAKTGRMFIGPELSEKL 814

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP DLG+R+K+A++EK+ GNI+GV PRILF YKYLE ECKDAAF+R+LK+LSFCS+I
Sbjct: 815  WLKMPGDLGQRMKKAYEEKHPGNIVGVCPRILFAYKYLEGECKDAAFRRSLKNLSFCSSI 874

Query: 3342 HIPGYY--RKPEKQYGARRSKTYKGKPHPSHARIENS 3446
             IPGYY  R  EK+YG RR+ TYKGKPH +HARIE +
Sbjct: 875  PIPGYYGGRSSEKRYGIRRTTTYKGKPHNTHARIEKT 911



 Score =  194 bits (493), Expect = 5e-46
 Identities = 97/131 (74%), Positives = 108/131 (82%)
 Frame = -2

Query: 2975 SKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCFK 2796
            S I+SKFDLKSGFHQVAMHP+SIE TAFWVP  L+EWLVMPFGLKNA A+FQRKMD CFK
Sbjct: 1482 STIFSKFDLKSGFHQVAMHPDSIEWTAFWVPSGLYEWLVMPFGLKNAPAVFQRKMDHCFK 1541

Query: 2795 GTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAVL 2616
            GTE FIAVYIDDILVFS +E EH EHL+ ML IC+KNGLILSP ++  A   IEFLGA++
Sbjct: 1542 GTEAFIAVYIDDILVFSLTEWEHGEHLKIMLSICQKNGLILSPTEMIFAHVGIEFLGAII 1601

Query: 2615 GNQRIKLQPHI 2583
                IKLQP I
Sbjct: 1602 HKGLIKLQPPI 1612



 Score =  165 bits (418), Expect = 3e-37
 Identities = 78/141 (55%), Positives = 101/141 (71%), Gaps = 1/141 (0%)
 Frame = -3

Query: 2587 IYVIPDIMLTIGDFFRNIQISIRT*GYESWQNGEANLLITRGLIGRLSNTPNAAFAYEVQ 2408
            +Y+IPD M+T+ DF RN+QISI T GY +WQNGEANLL+TRG++GRLSNTPN AFAY++Q
Sbjct: 190  VYIIPDTMMTVRDFCRNVQISILTKGYGNWQNGEANLLVTRGIVGRLSNTPNVAFAYQIQ 249

Query: 2407 GVVNYLISHGVNALPGRRYSTAQLQRLNWII-XXXXXXXXXXXTEVNSQNLIDGHISISF 2231
             V +YL+SHG+ ALPGRRYS A +Q   W +            T V+++N+IDG IS+ F
Sbjct: 250  NVTDYLVSHGIQALPGRRYSAADVQGQQWFLRPSNIPAVPMAPTNVDTRNMIDGSISLRF 309

Query: 2230 NNYTATPVIQPPRYNAHDEDI 2168
            N+Y   P   P  YN HDE+I
Sbjct: 310  NSYQPAPDPAPVAYNQHDEEI 330



 Score =  137 bits (344), Expect = 2e-28
 Identities = 67/129 (51%), Positives = 89/129 (68%), Gaps = 15/129 (11%)
 Frame = +2

Query: 926  HHQVTMHA---------------IYIGEESFNQL*RSRMQYLHIGVM*IRIQILHRQEEG 1060
            HHQV +H                + I  ES  QL RS M ++H+G++ +RI ILHRQ EG
Sbjct: 98   HHQVYIHRSEEAILCVDGDQVDRLLIQPESAEQLNRSGMPFIHMGIVQVRIPILHRQHEG 157

Query: 1061 TLALVLFRDNRWQGDRAIIATMEVDLTRGS*LIYVIPDIMLTIGDFFRNIQISIRTRGYE 1240
            T ALV+FRDNRWQGD++I ATME+DLT+G  ++Y+IPD M+T+ DF RN+QISI T+GY 
Sbjct: 158  TTALVVFRDNRWQGDQSIFATMELDLTKGMQMVYIIPDTMMTVRDFCRNVQISILTKGYG 217

Query: 1241 SWQNDEEEI 1267
            +WQN E  +
Sbjct: 218  NWQNGEANL 226



 Score =  125 bits (314), Expect = 6e-25
 Identities = 62/101 (61%), Positives = 76/101 (75%), Gaps = 1/101 (0%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            K KHL RNK+C+C+LCGEE HFARECPN+RRNVKRVAMFE L+LP DCEIVS+ EG+  S
Sbjct: 910  KTKHL-RNKKCKCYLCGEERHFARECPNDRRNVKRVAMFEGLDLPDDCEIVSIDEGDPDS 968

Query: 3959 DAIYSITEGEDEEDISQNLNTIFHEHIYVFKEE-ERTWWIG 3840
            DAI+SI+EGE+           F E  +VF+EE   T+W+G
Sbjct: 969  DAIFSISEGEE--------TGAFEEQCFVFQEECNGTYWLG 1001



 Score =  100 bits (249), Expect = 2e-17
 Identities = 48/78 (61%), Positives = 58/78 (74%)
 Frame = +1

Query: 1945 IEQQIDPQQQLRLSMQERAAIAPAEVLYHSRRDDANHRVYMHRSEEAILCTDNQQVDRTF 2124
            +EQ +DP+  L+LSMQERA + PAEVLY SR DD +H+VY+HRSEEAILC D  QVDR  
Sbjct: 63   LEQVVDPEVALQLSMQERARLVPAEVLYRSRSDDRHHQVYIHRSEEAILCVDGDQVDRLL 122

Query: 2125 IGEESFNQLQRSRMQYLH 2178
            I  ES  QL RS M ++H
Sbjct: 123  IQPESAEQLNRSGMPFIH 140



 Score = 84.7 bits (208), Expect = 2e-12
 Identities = 43/89 (48%), Positives = 57/89 (64%), Gaps = 4/89 (4%)
 Frame = -3

Query: 3739 DELELEEEDYFQ----IQESVYYSAGDSLAKFLSKIDLLL*KLRDQGFISEDALKHWARN 3572
            DE E EEE   Q    IQE V YS   S   F  K   ++ +L+ QG+I E+ +K+W   
Sbjct: 1314 DEEEKEEELNLQEHRLIQEMVAYSTERSFIHFQQKFAGIIQELKAQGYIGEEPMKYWTIK 1373

Query: 3571 KILCHMDIKNPDFIIEDRPLKHLTPQHAE 3485
            +++CH+DIKNPD +IEDRPLKH+TPQ  E
Sbjct: 1374 QVVCHLDIKNPDMVIEDRPLKHVTPQMEE 1402


>ref|YP_009140788.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
 emb|CDN68224.1| polyprotein [Grapevine roditis leaf discoloration-associated virus]
          Length = 1830

 Score =  228 bits (582), Expect = 1e-56
 Identities = 108/153 (70%), Positives = 129/153 (84%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VF+LEDP QGST +Q+EAYR+LERLSC ++K II FLN+Y++LA K+GR+F G ELSEK+
Sbjct: 629  VFSLEDPAQGSTVIQDEAYRELERLSCTDVKYIIPFLNEYLRLAAKSGRIFLGGELSEKI 688

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP DLGKRIK+ F  KY G I GV PR+LF YK+LENECK+AAFKR+LK+LSFCS+I
Sbjct: 689  WMKMPGDLGKRIKEEFDRKYPGVISGVVPRVLFAYKFLENECKEAAFKRSLKNLSFCSSI 748

Query: 3342 HIPGYYRKPEKQYGARRSKTYKGKPHPSHARIE 3440
             IPGYY+   K+YG RRSKTYKGKPH SHARIE
Sbjct: 749  PIPGYYKNTGKKYGVRRSKTYKGKPHESHARIE 781



 Score =  225 bits (573), Expect = 1e-55
 Identities = 105/132 (79%), Positives = 119/132 (90%)
 Frame = -2

Query: 2978 NSKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCF 2799
            NSKI+SKFDLKSGFHQVAMHP+SIE TAFWVPD L+EWLVMPFGLKNA +IFQRKMD CF
Sbjct: 1343 NSKIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMPFGLKNAPSIFQRKMDECF 1402

Query: 2798 KGTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAV 2619
             GTE+FIAVYIDDILVFS+ EK H +HLR ML ICK+NGL+LSP K+KIAV E+EFLGA 
Sbjct: 1403 NGTEEFIAVYIDDILVFSEDEKSHAKHLRIMLGICKRNGLVLSPTKMKIAVQEVEFLGAQ 1462

Query: 2618 LGNQRIKLQPHI 2583
            +GNQ+IKLQPH+
Sbjct: 1463 IGNQKIKLQPHV 1474



 Score =  175 bits (443), Expect = 3e-40
 Identities = 85/141 (60%), Positives = 99/141 (70%)
 Frame = -3

Query: 2587 IYVIPDIMLTIGDFFRNIQISIRT*GYESWQNGEANLLITRGLIGRLSNTPNAAFAYEVQ 2408
            +YVIPD M+TIGDF+RN+QISI+T GYESWQNGEANLLITRG+ GRLSNTPN  FAY + 
Sbjct: 195  VYVIPDTMMTIGDFYRNVQISIQTTGYESWQNGEANLLITRGMTGRLSNTPNVGFAYRIS 254

Query: 2407 GVVNYLISHGVNALPGRRYSTAQLQRLNWIIXXXXXXXXXXXTEVNSQNLIDGHISISFN 2228
             V +YL S GV ALPGRRY++  L+  NWII             V + NL+DG IS  F 
Sbjct: 255  HVTDYLASRGVQALPGRRYNSDMLRGRNWIIRQPQLQVTMMPRSVQTTNLLDGSISARFA 314

Query: 2227 NYTATPVIQPPRYNAHDEDIA 2165
            NYT  P  Q PRYN HDE+ A
Sbjct: 315  NYTQAPEPQQPRYNGHDEEEA 335



 Score =  151 bits (381), Expect = 7e-33
 Identities = 69/105 (65%), Positives = 89/105 (84%)
 Frame = +2

Query: 953  YIGEESFNQL*RSRMQYLHIGVM*IRIQILHRQEEGTLALVLFRDNRWQGDRAIIATMEV 1132
            +I  +SF +L RS MQ++H+GV+ +RIQILHR +EGT+ALV+FRDNRWQGD++I A  EV
Sbjct: 127  FIQPDSFQELQRSGMQFIHLGVLQVRIQILHRADEGTMALVVFRDNRWQGDQSIFAIAEV 186

Query: 1133 DLTRGS*LIYVIPDIMLTIGDFFRNIQISIRTRGYESWQNDEEEI 1267
            DLTRGS ++YVIPD M+TIGDF+RN+QISI+T GYESWQN E  +
Sbjct: 187  DLTRGSQIVYVIPDTMMTIGDFYRNVQISIQTTGYESWQNGEANL 231



 Score =  134 bits (336), Expect = 1e-27
 Identities = 60/83 (72%), Positives = 76/83 (91%), Gaps = 1/83 (1%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            KRKHL+RNKRC+CFLCG+EGHFARECPN+R++ KR+AMFE LELP DC+IVSVQEGE+ S
Sbjct: 782  KRKHLVRNKRCKCFLCGQEGHFARECPNDRKSSKRMAMFENLELPDDCDIVSVQEGEELS 841

Query: 3959 DAIYSITEGED-EEDISQNLNTI 3894
            DAIYSI+EGED +E++ ++L T+
Sbjct: 842  DAIYSISEGEDNDEELQRSLQTM 864



 Score =  100 bits (249), Expect = 2e-17
 Identities = 48/78 (61%), Positives = 62/78 (79%)
 Frame = +1

Query: 1945 IEQQIDPQQQLRLSMQERAAIAPAEVLYHSRRDDANHRVYMHRSEEAILCTDNQQVDRTF 2124
            +EQ IDP+++L  SMQERA + PAEVLY +RRD+ NH+VY HRSEEA+LC   QQ DR+F
Sbjct: 69   LEQTIDPEEELSQSMQERANLVPAEVLYRTRRDNINHQVYNHRSEEAMLCVGEQQ-DRSF 127

Query: 2125 IGEESFNQLQRSRMQYLH 2178
            I  +SF +LQRS MQ++H
Sbjct: 128  IQPDSFQELQRSGMQFIH 145



 Score = 93.2 bits (230), Expect = 4e-15
 Identities = 44/89 (49%), Positives = 62/89 (69%)
 Frame = -3

Query: 3751 AVAIDELELEEEDYFQIQESVYYSAGDSLAKFLSKIDLLL*KLRDQGFISEDALKHWARN 3572
            +V + E E+ EE+Y QIQ+ V  + G+S   FL K   L+ + ++ G+I E+ L+HW +N
Sbjct: 1176 SVNVLEEEVCEEEYLQIQDMVVCNIGESRESFLKKFKPLIEEFQEAGYIGENPLQHWEKN 1235

Query: 3571 KILCHMDIKNPDFIIEDRPLKHLTPQHAE 3485
             +LC +DIKNPDFIIEDRPLK +TPQ  E
Sbjct: 1236 GVLCQLDIKNPDFIIEDRPLKSVTPQMKE 1264


>gb|ANK58548.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  228 bits (582), Expect = 1e-56
 Identities = 108/153 (70%), Positives = 128/153 (83%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VF+LEDP QGST +Q+EAYR+LER+SC ++K II FLN+YM+LA KTGRLF G ELSEK+
Sbjct: 650  VFSLEDPAQGSTVIQDEAYRELERMSCTDVKYIIPFLNEYMRLAAKTGRLFLGGELSEKI 709

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP DLGKRIK+ F  KY G + GV PR+LF YK+LE EC+DAAFKR+LK+LSFCS+I
Sbjct: 710  WMKMPGDLGKRIKEDFDNKYPGVVSGVVPRVLFAYKFLEKECRDAAFKRSLKNLSFCSSI 769

Query: 3342 HIPGYYRKPEKQYGARRSKTYKGKPHPSHARIE 3440
             IPGYY+   K+YG RRSKTYKGKPH SHARIE
Sbjct: 770  PIPGYYKNTGKKYGVRRSKTYKGKPHESHARIE 802



 Score =  224 bits (571), Expect = 2e-55
 Identities = 104/132 (78%), Positives = 121/132 (91%)
 Frame = -2

Query: 2978 NSKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCF 2799
            NSKI+SKFDLKSGFHQVAMHP+SIE TAFWVPD L+EWLVMPFGLKNA ++FQRKMD CF
Sbjct: 1364 NSKIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMPFGLKNAPSVFQRKMDECF 1423

Query: 2798 KGTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAV 2619
            KGTE FIAVYIDDILVFS++EK+  +HL+ MLEICK+NGL+LSP K+KIAV E+EFLGA 
Sbjct: 1424 KGTEDFIAVYIDDILVFSENEKDLAKHLKAMLEICKRNGLVLSPSKMKIAVQEVEFLGAQ 1483

Query: 2618 LGNQRIKLQPHI 2583
            +GNQRI+LQPH+
Sbjct: 1484 IGNQRIRLQPHV 1495



 Score =  168 bits (425), Expect = 5e-38
 Identities = 81/141 (57%), Positives = 98/141 (69%)
 Frame = -3

Query: 2587 IYVIPDIMLTIGDFFRNIQISIRT*GYESWQNGEANLLITRGLIGRLSNTPNAAFAYEVQ 2408
            +YVIPD M+TIGDF+RN+QISI+T GYE+WQNGEANLLITRG+ GRLSNTPN  FAY + 
Sbjct: 192  VYVIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRIS 251

Query: 2407 GVVNYLISHGVNALPGRRYSTAQLQRLNWIIXXXXXXXXXXXTEVNSQNLIDGHISISFN 2228
             V +YL S GV ALPGRRY +  L+  NWII             V ++NLIDG IS  F 
Sbjct: 252  HVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARFA 311

Query: 2227 NYTATPVIQPPRYNAHDEDIA 2165
            +YT  P  + P YN  DE++A
Sbjct: 312  DYTQAPEPRQPHYNEQDEEVA 332



 Score =  149 bits (376), Expect = 3e-32
 Identities = 75/155 (48%), Positives = 105/155 (67%), Gaps = 6/155 (3%)
 Frame = +2

Query: 821  NQKMAQNVMRLVEQIMFRCSSEKSSPSILRS------LMVMHHQVTMHAIYIGEESFNQL 982
            NQ M +    +  ++++R   +  +  +         L V   Q  M   +I   SF +L
Sbjct: 77   NQSMQERANLVPAEVLYRSRRDNINHQVYNHRSEEAMLCVGEQQDRM---FIQPNSFQEL 133

Query: 983  *RSRMQYLHIGVM*IRIQILHRQEEGTLALVLFRDNRWQGDRAIIATMEVDLTRGS*LIY 1162
             RS MQ++H+GV+ +R+QILHR +EGT+ALV+FRDNRWQGD++I A  EVDLTRGS ++Y
Sbjct: 134  QRSGMQFIHLGVLQVRLQILHRADEGTMALVVFRDNRWQGDQSIFAISEVDLTRGSQIVY 193

Query: 1163 VIPDIMLTIGDFFRNIQISIRTRGYESWQNDEEEI 1267
            VIPD M+TIGDF+RN+QISI+T GYE+WQN E  +
Sbjct: 194  VIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANL 228



 Score =  130 bits (328), Expect = 1e-26
 Identities = 57/83 (68%), Positives = 75/83 (90%), Gaps = 1/83 (1%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            KRKHL+RNKRC+CFLCG+EGHFAR+CPN++R+ KR+AMFE LE+P DC+IVSV+EGED S
Sbjct: 803  KRKHLVRNKRCKCFLCGQEGHFARKCPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMS 862

Query: 3959 DAIYSITEGED-EEDISQNLNTI 3894
            DAIYSI+EGED  +++ ++L T+
Sbjct: 863  DAIYSISEGEDGADELQRSLQTL 885



 Score = 99.0 bits (245), Expect = 7e-17
 Identities = 49/87 (56%), Positives = 64/87 (73%)
 Frame = -3

Query: 3745 AIDELELEEEDYFQIQESVYYSAGDSLAKFLSKIDLLL*KLRDQGFISEDALKHWARNKI 3566
            ++DE E+ EE+Y Q+QE V  + G+S   FL K   LL +L++ GFI E+ L+HW +N I
Sbjct: 1200 SLDE-EVCEEEYLQVQEMVICNIGESRESFLKKFRPLLEELKEAGFIGENPLQHWKKNGI 1258

Query: 3565 LCHMDIKNPDFIIEDRPLKHLTPQHAE 3485
            LC +DIKNPDFIIEDRPLK+LTPQ  E
Sbjct: 1259 LCQLDIKNPDFIIEDRPLKNLTPQMKE 1285



 Score = 97.8 bits (242), Expect = 2e-16
 Identities = 48/78 (61%), Positives = 59/78 (75%)
 Frame = +1

Query: 1945 IEQQIDPQQQLRLSMQERAAIAPAEVLYHSRRDDANHRVYMHRSEEAILCTDNQQVDRTF 2124
            +EQ +DP+ +L  SMQERA + PAEVLY SRRD+ NH+VY HRSEEA+LC   QQ DR F
Sbjct: 66   LEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQVYNHRSEEAMLCVGEQQ-DRMF 124

Query: 2125 IGEESFNQLQRSRMQYLH 2178
            I   SF +LQRS MQ++H
Sbjct: 125  IQPNSFQELQRSGMQFIH 142


>gb|ANK58545.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  228 bits (582), Expect = 1e-56
 Identities = 108/153 (70%), Positives = 128/153 (83%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VF+LEDP QGST +Q+EAYR+LER+SC ++K II FLN+YM+LA KTGRLF G ELSEK+
Sbjct: 650  VFSLEDPAQGSTVIQDEAYRELERMSCTDVKYIIPFLNEYMRLAAKTGRLFLGGELSEKI 709

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP DLGKRIK+ F  KY G + GV PR+LF YK+LE EC+DAAFKR+LK+LSFCS+I
Sbjct: 710  WMKMPGDLGKRIKEDFDNKYPGVVSGVVPRVLFAYKFLEKECRDAAFKRSLKNLSFCSSI 769

Query: 3342 HIPGYYRKPEKQYGARRSKTYKGKPHPSHARIE 3440
             IPGYY+   K+YG RRSKTYKGKPH SHARIE
Sbjct: 770  PIPGYYKNTGKKYGVRRSKTYKGKPHESHARIE 802



 Score =  225 bits (573), Expect = 1e-55
 Identities = 103/132 (78%), Positives = 121/132 (91%)
 Frame = -2

Query: 2978 NSKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCF 2799
            NS I+SKFDLKSGFHQVAMHP+SIE TAFWVPD L+EWLVMPFGLKNA ++FQRKMD CF
Sbjct: 1364 NSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMPFGLKNAPSVFQRKMDECF 1423

Query: 2798 KGTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAV 2619
            KGTE FIAVYIDDILVFS++EK+H +HL+ +LEICK+NGL+LSP K+KIAV E+EFLGA 
Sbjct: 1424 KGTEDFIAVYIDDILVFSENEKDHAKHLKALLEICKRNGLVLSPSKMKIAVQEVEFLGAQ 1483

Query: 2618 LGNQRIKLQPHI 2583
            +GNQRI+LQPH+
Sbjct: 1484 IGNQRIRLQPHV 1495



 Score =  168 bits (425), Expect = 5e-38
 Identities = 81/141 (57%), Positives = 98/141 (69%)
 Frame = -3

Query: 2587 IYVIPDIMLTIGDFFRNIQISIRT*GYESWQNGEANLLITRGLIGRLSNTPNAAFAYEVQ 2408
            +YVIPD M+TIGDF+RN+QISI+T GYE+WQNGEANLLITRG+ GRLSNTPN  FAY + 
Sbjct: 192  VYVIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRIS 251

Query: 2407 GVVNYLISHGVNALPGRRYSTAQLQRLNWIIXXXXXXXXXXXTEVNSQNLIDGHISISFN 2228
             V +YL S GV ALPGRRY +  L+  NWII             V ++NLIDG IS  F 
Sbjct: 252  HVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARFA 311

Query: 2227 NYTATPVIQPPRYNAHDEDIA 2165
            +YT  P  + P YN  DE++A
Sbjct: 312  DYTQAPEPRQPHYNEQDEEVA 332



 Score =  149 bits (375), Expect = 4e-32
 Identities = 67/106 (63%), Positives = 89/106 (83%)
 Frame = +2

Query: 950  IYIGEESFNQL*RSRMQYLHIGVM*IRIQILHRQEEGTLALVLFRDNRWQGDRAIIATME 1129
            ++I   SF +L RS MQ++H+GV+ +R+QILHR +EGT+ALV+FRDNRWQGD++I A  E
Sbjct: 123  MFIQPNSFQELQRSGMQFIHLGVLQVRLQILHRADEGTMALVVFRDNRWQGDQSIFAISE 182

Query: 1130 VDLTRGS*LIYVIPDIMLTIGDFFRNIQISIRTRGYESWQNDEEEI 1267
            VDLTRGS ++YVIPD M+TIGDF+RN+QISI+T GYE+WQN E  +
Sbjct: 183  VDLTRGSQIVYVIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANL 228



 Score =  132 bits (332), Expect = 4e-27
 Identities = 58/83 (69%), Positives = 75/83 (90%), Gaps = 1/83 (1%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            KRKHL+RNKRC+CFLCG+EGHFARECPN++R+ KR+AMFE LE+P DC+IVSV+EGED S
Sbjct: 803  KRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMS 862

Query: 3959 DAIYSITEGED-EEDISQNLNTI 3894
            DAIYSI+EGED  +++ ++L T+
Sbjct: 863  DAIYSISEGEDGADELQRSLQTL 885



 Score =  100 bits (248), Expect = 3e-17
 Identities = 49/78 (62%), Positives = 60/78 (76%)
 Frame = +1

Query: 1945 IEQQIDPQQQLRLSMQERAAIAPAEVLYHSRRDDANHRVYMHRSEEAILCTDNQQVDRTF 2124
            +EQ +DP+ +L LSMQERA + PAEVLY SRRD+ NH+VY HRSEEA+LC   QQ DR F
Sbjct: 66   LEQIVDPEVELNLSMQERANLVPAEVLYRSRRDNINHQVYNHRSEEAMLCVGEQQ-DRMF 124

Query: 2125 IGEESFNQLQRSRMQYLH 2178
            I   SF +LQRS MQ++H
Sbjct: 125  IQPNSFQELQRSGMQFIH 142



 Score = 99.0 bits (245), Expect = 7e-17
 Identities = 49/87 (56%), Positives = 64/87 (73%)
 Frame = -3

Query: 3745 AIDELELEEEDYFQIQESVYYSAGDSLAKFLSKIDLLL*KLRDQGFISEDALKHWARNKI 3566
            ++DE E+ EE+Y Q+QE V  + G+S   FL K   LL +L++ GFI E+ L+HW +N I
Sbjct: 1200 SLDE-EVCEEEYLQVQEMVICNIGESRESFLKKFRPLLEELKEAGFIGENPLQHWKKNGI 1258

Query: 3565 LCHMDIKNPDFIIEDRPLKHLTPQHAE 3485
            LC +DIKNPDFIIEDRPLK+LTPQ  E
Sbjct: 1259 LCQLDIKNPDFIIEDRPLKNLTPQMKE 1285


>gb|ANK58542.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  228 bits (582), Expect = 1e-56
 Identities = 108/153 (70%), Positives = 128/153 (83%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VF+LEDP QGST +Q+EAYR+LER+SC ++K II FLN+YM+LA KTGRLF G ELSEK+
Sbjct: 650  VFSLEDPAQGSTVIQDEAYRELERMSCTDVKYIIPFLNEYMRLAAKTGRLFLGGELSEKI 709

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP DLGKRIK+ F  KY G + GV PR+LF YK+LE EC+DAAFKR+LK+LSFCS+I
Sbjct: 710  WMKMPGDLGKRIKEDFDNKYPGVVSGVVPRVLFAYKFLEKECRDAAFKRSLKNLSFCSSI 769

Query: 3342 HIPGYYRKPEKQYGARRSKTYKGKPHPSHARIE 3440
             IPGYY+   K+YG RRSKTYKGKPH SHARIE
Sbjct: 770  PIPGYYKNTGKKYGVRRSKTYKGKPHESHARIE 802



 Score =  226 bits (576), Expect = 6e-56
 Identities = 104/132 (78%), Positives = 121/132 (91%)
 Frame = -2

Query: 2978 NSKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCF 2799
            NS I+SKFDLKSGFHQVAMHP+SIE TAFWVPD L+EWLVMPFGLKNA ++FQRKMD CF
Sbjct: 1364 NSTIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMPFGLKNAPSVFQRKMDECF 1423

Query: 2798 KGTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAV 2619
            KGTE FIAVYIDDILVFS++EK+H +HL+ MLEICK+NGL+LSP K+KIAV E+EFLGA 
Sbjct: 1424 KGTEDFIAVYIDDILVFSENEKDHAKHLKAMLEICKRNGLVLSPSKMKIAVQEVEFLGAQ 1483

Query: 2618 LGNQRIKLQPHI 2583
            +GNQRI+LQPH+
Sbjct: 1484 IGNQRIRLQPHV 1495



 Score =  168 bits (425), Expect = 5e-38
 Identities = 81/141 (57%), Positives = 98/141 (69%)
 Frame = -3

Query: 2587 IYVIPDIMLTIGDFFRNIQISIRT*GYESWQNGEANLLITRGLIGRLSNTPNAAFAYEVQ 2408
            +YVIPD M+TIGDF+RN+QISI+T GYE+WQNGEANLLITRG+ GRLSNTPN  FAY + 
Sbjct: 192  VYVIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRIS 251

Query: 2407 GVVNYLISHGVNALPGRRYSTAQLQRLNWIIXXXXXXXXXXXTEVNSQNLIDGHISISFN 2228
             V +YL S GV ALPGRRY +  L+  NWII             V ++NLIDG IS  F 
Sbjct: 252  HVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARFA 311

Query: 2227 NYTATPVIQPPRYNAHDEDIA 2165
            +YT  P  + P YN  DE++A
Sbjct: 312  DYTQAPEPRQPHYNEQDEEVA 332



 Score =  149 bits (377), Expect = 2e-32
 Identities = 76/155 (49%), Positives = 105/155 (67%), Gaps = 6/155 (3%)
 Frame = +2

Query: 821  NQKMAQNVMRLVEQIMFRCSSEKSSPSILRS------LMVMHHQVTMHAIYIGEESFNQL 982
            NQ M +    +  ++++R   +  +  I         L V   Q  M   +I   SF +L
Sbjct: 77   NQSMQERANLVPAEVLYRSRRDNINHQIYNHRSEEAMLCVGEQQDRM---FIQPNSFQEL 133

Query: 983  *RSRMQYLHIGVM*IRIQILHRQEEGTLALVLFRDNRWQGDRAIIATMEVDLTRGS*LIY 1162
             RS MQ++H+GV+ +R+QILHR +EGT+ALV+FRDNRWQGD++I A  EVDLTRGS ++Y
Sbjct: 134  QRSGMQFIHLGVLQVRLQILHRADEGTMALVVFRDNRWQGDQSIFAISEVDLTRGSQIVY 193

Query: 1163 VIPDIMLTIGDFFRNIQISIRTRGYESWQNDEEEI 1267
            VIPD M+TIGDF+RN+QISI+T GYE+WQN E  +
Sbjct: 194  VIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANL 228



 Score =  132 bits (332), Expect = 4e-27
 Identities = 58/83 (69%), Positives = 75/83 (90%), Gaps = 1/83 (1%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            KRKHL+RNKRC+CFLCG+EGHFARECPN++R+ KR+AMFE LE+P DC+IVSV+EGED S
Sbjct: 803  KRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMS 862

Query: 3959 DAIYSITEGED-EEDISQNLNTI 3894
            DAIYSI+EGED  +++ ++L T+
Sbjct: 863  DAIYSISEGEDGADELQRSLQTL 885



 Score = 97.4 bits (241), Expect = 2e-16
 Identities = 47/78 (60%), Positives = 59/78 (75%)
 Frame = +1

Query: 1945 IEQQIDPQQQLRLSMQERAAIAPAEVLYHSRRDDANHRVYMHRSEEAILCTDNQQVDRTF 2124
            +EQ +DP+ +L  SMQERA + PAEVLY SRRD+ NH++Y HRSEEA+LC   QQ DR F
Sbjct: 66   LEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQIYNHRSEEAMLCVGEQQ-DRMF 124

Query: 2125 IGEESFNQLQRSRMQYLH 2178
            I   SF +LQRS MQ++H
Sbjct: 125  IQPNSFQELQRSGMQFIH 142



 Score = 95.9 bits (237), Expect = 6e-16
 Identities = 48/87 (55%), Positives = 63/87 (72%)
 Frame = -3

Query: 3745 AIDELELEEEDYFQIQESVYYSAGDSLAKFLSKIDLLL*KLRDQGFISEDALKHWARNKI 3566
            ++DE E+ EE+Y Q+QE V  + G+S   FL K   LL +L++ GFI E+ L+HW +N I
Sbjct: 1200 SLDE-EVCEEEYLQVQEMVICNIGESRESFLKKFRPLLEELKEAGFIGENPLQHWKKNGI 1258

Query: 3565 LCHMDIKNPDFIIEDRPLKHLTPQHAE 3485
            LC +DIKNPDFIIEDRPLK+LT Q  E
Sbjct: 1259 LCQLDIKNPDFIIEDRPLKNLTSQMKE 1285


>gb|ANK58539.1| polyprotein [Fig badnavirus 1]
          Length = 1837

 Score =  228 bits (582), Expect = 1e-56
 Identities = 108/153 (70%), Positives = 128/153 (83%)
 Frame = +3

Query: 2982 VFTLEDPYQGSTALQEEAYRDLERLSCNNLKDIIKFLNDYMKLA*KTGRLFTGPELSEKL 3161
            VF+LEDP QGST +Q+EAYR+LER+SC ++K II FLN+YM+LA KTGRLF G ELSEK+
Sbjct: 650  VFSLEDPAQGSTVIQDEAYRELERMSCTDVKYIIPFLNEYMRLAAKTGRLFLGGELSEKI 709

Query: 3162 WSKMP*DLGKRIKQAFQEKYTGNIIGVFPRILFTYKYLENECKDAAFKRALKDLSFCSNI 3341
            W KMP DLGKRIK+ F  KY G + GV PR+LF YK+LE EC+DAAFKR+LK+LSFCS+I
Sbjct: 710  WMKMPGDLGKRIKEDFDNKYPGVVSGVVPRVLFAYKFLEKECRDAAFKRSLKNLSFCSSI 769

Query: 3342 HIPGYYRKPEKQYGARRSKTYKGKPHPSHARIE 3440
             IPGYY+   K+YG RRSKTYKGKPH SHARIE
Sbjct: 770  PIPGYYKNTGKKYGVRRSKTYKGKPHESHARIE 802



 Score =  224 bits (571), Expect = 2e-55
 Identities = 104/132 (78%), Positives = 121/132 (91%)
 Frame = -2

Query: 2978 NSKIYSKFDLKSGFHQVAMHPESIELTAFWVPDSLFEWLVMPFGLKNALAIFQRKMDLCF 2799
            NSKI+SKFDLKSGFHQVAMHP+SIE TAFWVPD L+EWLVMPFGLKNA ++FQRKMD CF
Sbjct: 1364 NSKIFSKFDLKSGFHQVAMHPDSIEWTAFWVPDGLYEWLVMPFGLKNAPSVFQRKMDECF 1423

Query: 2798 KGTEKFIAVYIDDILVFSDSEKEHEEHLRTMLEICKKNGLILSPIKLKIAVNEIEFLGAV 2619
            KGTE FIAVYIDDILVFS++EK+  +HL+ MLEICK+NGL+LSP K+KIAV E+EFLGA 
Sbjct: 1424 KGTEDFIAVYIDDILVFSENEKDLAKHLKAMLEICKRNGLVLSPSKMKIAVQEVEFLGAQ 1483

Query: 2618 LGNQRIKLQPHI 2583
            +GNQRI+LQPH+
Sbjct: 1484 IGNQRIRLQPHV 1495



 Score =  168 bits (425), Expect = 5e-38
 Identities = 81/141 (57%), Positives = 98/141 (69%)
 Frame = -3

Query: 2587 IYVIPDIMLTIGDFFRNIQISIRT*GYESWQNGEANLLITRGLIGRLSNTPNAAFAYEVQ 2408
            +YVIPD M+TIGDF+RN+QISI+T GYE+WQNGEANLLITRG+ GRLSNTPN  FAY + 
Sbjct: 192  VYVIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANLLITRGMTGRLSNTPNVGFAYRIS 251

Query: 2407 GVVNYLISHGVNALPGRRYSTAQLQRLNWIIXXXXXXXXXXXTEVNSQNLIDGHISISFN 2228
             V +YL S GV ALPGRRY +  L+  NWII             V ++NLIDG IS  F 
Sbjct: 252  HVTDYLASRGVQALPGRRYRSEMLRGRNWIIRQPQIQAAMMPRNVETRNLIDGTISARFA 311

Query: 2227 NYTATPVIQPPRYNAHDEDIA 2165
            +YT  P  + P YN  DE++A
Sbjct: 312  DYTQAPEPRQPHYNEQDEEVA 332



 Score =  149 bits (376), Expect = 3e-32
 Identities = 75/155 (48%), Positives = 105/155 (67%), Gaps = 6/155 (3%)
 Frame = +2

Query: 821  NQKMAQNVMRLVEQIMFRCSSEKSSPSILRS------LMVMHHQVTMHAIYIGEESFNQL 982
            NQ M +    +  ++++R   +  +  +         L V   Q  M   +I   SF +L
Sbjct: 77   NQSMQERANLVPAEVLYRSRRDNINHQVYNHRSEEAMLCVGEQQDRM---FIQPNSFQEL 133

Query: 983  *RSRMQYLHIGVM*IRIQILHRQEEGTLALVLFRDNRWQGDRAIIATMEVDLTRGS*LIY 1162
             RS MQ++H+GV+ +R+QILHR +EGT+ALV+FRDNRWQGD++I A  EVDLTRGS ++Y
Sbjct: 134  QRSGMQFIHLGVLQVRLQILHRADEGTMALVVFRDNRWQGDQSIFAISEVDLTRGSQIVY 193

Query: 1163 VIPDIMLTIGDFFRNIQISIRTRGYESWQNDEEEI 1267
            VIPD M+TIGDF+RN+QISI+T GYE+WQN E  +
Sbjct: 194  VIPDTMMTIGDFYRNVQISIQTSGYENWQNGEANL 228



 Score =  132 bits (332), Expect = 4e-27
 Identities = 58/83 (69%), Positives = 75/83 (90%), Gaps = 1/83 (1%)
 Frame = -2

Query: 4139 KRKHLIRNKRCRCFLCGEEGHFARECPNERRNVKRVAMFEQLELPADCEIVSVQEGEDPS 3960
            KRKHL+RNKRC+CFLCG+EGHFARECPN++R+ KR+AMFE LE+P DC+IVSV+EGED S
Sbjct: 803  KRKHLVRNKRCKCFLCGQEGHFARECPNDKRSSKRMAMFENLEIPEDCDIVSVEEGEDMS 862

Query: 3959 DAIYSITEGED-EEDISQNLNTI 3894
            DAIYSI+EGED  +++ ++L T+
Sbjct: 863  DAIYSISEGEDGADELQRSLQTL 885



 Score = 97.8 bits (242), Expect = 2e-16
 Identities = 48/78 (61%), Positives = 59/78 (75%)
 Frame = +1

Query: 1945 IEQQIDPQQQLRLSMQERAAIAPAEVLYHSRRDDANHRVYMHRSEEAILCTDNQQVDRTF 2124
            +EQ +DP+ +L  SMQERA + PAEVLY SRRD+ NH+VY HRSEEA+LC   QQ DR F
Sbjct: 66   LEQIVDPEVELNQSMQERANLVPAEVLYRSRRDNINHQVYNHRSEEAMLCVGEQQ-DRMF 124

Query: 2125 IGEESFNQLQRSRMQYLH 2178
            I   SF +LQRS MQ++H
Sbjct: 125  IQPNSFQELQRSGMQFIH 142



 Score = 95.9 bits (237), Expect = 6e-16
 Identities = 48/87 (55%), Positives = 63/87 (72%)
 Frame = -3

Query: 3745 AIDELELEEEDYFQIQESVYYSAGDSLAKFLSKIDLLL*KLRDQGFISEDALKHWARNKI 3566
            ++DE E+ EE+Y Q+QE V  + G+S   FL K   LL +L++ GFI E+ L+HW +N I
Sbjct: 1200 SLDE-EVCEEEYLQVQEMVICNIGESRESFLKKFRPLLEELKEAGFIGENPLQHWKKNGI 1258

Query: 3565 LCHMDIKNPDFIIEDRPLKHLTPQHAE 3485
            LC +DIKNPDFIIEDRPLK+LT Q  E
Sbjct: 1259 LCQLDIKNPDFIIEDRPLKNLTSQMKE 1285