BLASTX nr result
ID: Cheilocostus21_contig00044437
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00044437
(2485 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA99372.1| retrotransposon protein, putative, Ty3-gypsy subc... 114 6e-44
tpd|FAA01208.1| TPA: orf y [Oryza sativa Japonica Group] 113 2e-43
tpd|FAA00012.1| TPA: hypothetical protein [Rice tungro bacillifo... 113 2e-43
gb|ABA99914.1| retrotransposon protein, putative, Ty3-gypsy subc... 113 2e-43
emb|CAE02744.2| OSJNBa0006B20.7 [Oryza sativa Japonica Group] >g... 114 2e-43
tpd|FAA01205.1| TPA: orf y [Oryza sativa Japonica Group] 113 2e-43
emb|CAE03089.2| OSJNBa0017B10.4 [Oryza sativa Japonica Group] 112 2e-43
tpd|FAA00009.1| TPA: hypothetical protein [Rice tungro bacillifo... 113 3e-43
tpd|FAA01199.1| TPA: orf y [Oryza sativa Japonica Group] 111 4e-43
gb|ABA96037.1| retrotransposon protein, putative, Ty3-gypsy subc... 111 4e-43
gb|AAP53741.2| transposon protein, putative, CACTA, En/Spm sub-c... 111 5e-43
tpd|FAA01202.1| TPA: orf y [Oryza sativa Japonica Group] 111 5e-43
gb|ABG66247.1| retrotransposon protein, putative, Ty3-gypsy subc... 111 5e-43
tpd|FAA00006.1| TPA: hypothetical protein [Rice tungro bacillifo... 110 1e-42
tpd|FAA01211.1| TPA: orf y [Oryza sativa Japonica Group] 109 2e-42
gb|AAU10730.1| putative polyprotein [Oryza sativa Japonica Group] 111 2e-41
gb|KYP64476.1| Putative polyprotein [Cajanus cajan] 103 2e-37
gb|AAP53052.1| retrotransposon protein, putative, Ty3-gypsy subc... 114 1e-36
gb|ATZ69506.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus] 88 9e-31
gb|ATZ69514.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus] 88 9e-31
>gb|ABA99372.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1098
Score = 114 bits (286), Expect(2) = 6e-44
Identities = 63/137 (45%), Positives = 85/137 (62%), Gaps = 3/137 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 577 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKTGFWQVKMAEESIEWTAFTCPQGHYE 636
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+FV VYIDD+L+ S+T K+ +HL+L +K
Sbjct: 637 WLVMPLGLKNAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKDHIAHLELFFRKVEQ 696
Query: 1242 NEIIVLGQKS*FYRKNI 1292
N +I+ +K Y++ +
Sbjct: 697 NGLILSKKKMEIYKEKV 713
Score = 94.7 bits (234), Expect(2) = 6e-44
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 487 QIIGEIPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRES 546
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 547 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 577
>tpd|FAA01208.1| TPA: orf y [Oryza sativa Japonica Group]
Length = 1718
Score = 113 bits (282), Expect(2) = 2e-43
Identities = 63/129 (48%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 1348 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYE 1407
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+F+ VYIDD+LV SRT KE +HL++ +K
Sbjct: 1408 WLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFFRKVEQ 1467
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 1468 NGLILSKKK 1476
Score = 94.7 bits (234), Expect(2) = 2e-43
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 1258 QIIGEIPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRES 1317
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 1318 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 1348
>tpd|FAA00012.1| TPA: hypothetical protein [Rice tungro bacilliform virus]
Length = 1718
Score = 113 bits (282), Expect(2) = 2e-43
Identities = 63/129 (48%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 1348 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYE 1407
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+F+ VYIDD+LV SRT KE +HL++ +K
Sbjct: 1408 WLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFFRKVEQ 1467
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 1468 NGLILSKKK 1476
Score = 94.7 bits (234), Expect(2) = 2e-43
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 1258 QIIGEIPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRES 1317
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 1318 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 1348
>gb|ABA99914.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 730
Score = 113 bits (282), Expect(2) = 2e-43
Identities = 63/129 (48%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 181 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYE 240
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+F+ VYIDD+LV SRT KE +HL++ +K
Sbjct: 241 WLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFFRKVEQ 300
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 301 NGLILSKKK 309
Score = 94.7 bits (234), Expect(2) = 2e-43
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 91 QIIGEIPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIKEFKMHIEELLKLGAIRES 150
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 151 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 181
>emb|CAE02744.2| OSJNBa0006B20.7 [Oryza sativa Japonica Group]
emb|CAH67571.1| H0315A08.1 [Oryza sativa]
Length = 685
Score = 114 bits (285), Expect(2) = 2e-43
Identities = 63/129 (48%), Positives = 82/129 (63%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 243 LNNNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYE 302
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+F+ VYIDD+LV SRT KE +HL++ ++K
Sbjct: 303 WLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFIRKVEQ 362
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 363 NGLILSKKK 371
Score = 93.6 bits (231), Expect(2) = 2e-43
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 153 QIIGEIPIKYWGKNAIECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRES 212
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 213 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 243
>tpd|FAA01205.1| TPA: orf y [Oryza sativa Japonica Group]
Length = 1718
Score = 113 bits (282), Expect(2) = 2e-43
Identities = 63/129 (48%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 1348 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYE 1407
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+F+ VYIDD+LV SRT KE +HL++ +K
Sbjct: 1408 WLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFFRKVEQ 1467
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 1468 NGLILSKKK 1476
Score = 94.4 bits (233), Expect(2) = 2e-43
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 1258 QIIGEIPMKYWXKNAIECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRES 1317
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 1318 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 1348
>emb|CAE03089.2| OSJNBa0017B10.4 [Oryza sativa Japonica Group]
Length = 429
Score = 112 bits (281), Expect(2) = 2e-43
Identities = 63/129 (48%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 132 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYE 191
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+F+ VYIDD+LV SRT KE +HL++ +K
Sbjct: 192 WLVMPLGLKNAPAIFQRKIQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFFRKVEQ 251
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 252 NGLILSKKK 260
Score = 94.7 bits (234), Expect(2) = 2e-43
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 42 QIIGEIPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRES 101
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 102 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 132
>tpd|FAA00009.1| TPA: hypothetical protein [Rice tungro bacilliform virus]
Length = 1718
Score = 113 bits (282), Expect(2) = 3e-43
Identities = 63/129 (48%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 1348 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYE 1407
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+F+ VYIDD+LV SRT KE +HL++ +K
Sbjct: 1408 WLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFFRKVEQ 1467
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 1468 NGLILSKKK 1476
Score = 94.0 bits (232), Expect(2) = 3e-43
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 1258 QIIGEIPXKYWXKNAIECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRES 1317
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 1318 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 1348
>tpd|FAA01199.1| TPA: orf y [Oryza sativa Japonica Group]
Length = 1711
Score = 111 bits (278), Expect(2) = 4e-43
Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 1341 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYE 1400
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+FV VYIDD+L+ S+T K+ +HL+L +K
Sbjct: 1401 WLVMPLGLKNAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKDHIAHLELFFRKVEQ 1460
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 1461 NGLILSKKK 1469
Score = 95.1 bits (235), Expect(2) = 4e-43
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 1251 QIIGEIPMKYWEKNAIECKINILNPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRES 1310
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 1311 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 1341
>gb|ABA96037.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 792
Score = 111 bits (278), Expect(2) = 4e-43
Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 243 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYE 302
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+FV VYIDD+L+ S+T K+ +HL+L +K
Sbjct: 303 WLVMPLGLKNAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKDHIAHLELFFRKVEQ 362
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 363 NGLILSKKK 371
Score = 95.1 bits (235), Expect(2) = 4e-43
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 153 QIIGEIPMKYWEKNAIECKINILNPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRES 212
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 213 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 243
>gb|AAP53741.2| transposon protein, putative, CACTA, En/Spm sub-class [Oryza sativa
Japonica Group]
Length = 2828
Score = 111 bits (278), Expect(2) = 5e-43
Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 2307 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYE 2366
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+FV VYIDD+L+ S+T K+ +HL+L +K
Sbjct: 2367 WLVMPLGLKNAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKDHIAHLELFFRKVEQ 2426
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 2427 NGLILSKKK 2435
Score = 94.7 bits (234), Expect(2) = 5e-43
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 2217 QIIGEIPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRES 2276
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 2277 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 2307
>tpd|FAA01202.1| TPA: orf y [Oryza sativa Japonica Group]
Length = 1711
Score = 111 bits (278), Expect(2) = 5e-43
Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 1341 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYE 1400
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+FV VYIDD+L+ S+T K+ +HL+L +K
Sbjct: 1401 WLVMPLGLKNAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKDHIAHLELFFRKVEQ 1460
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 1461 NGLILSKKK 1469
Score = 94.7 bits (234), Expect(2) = 5e-43
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 1251 QIIGEIPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRES 1310
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 1311 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 1341
>gb|ABG66247.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 764
Score = 111 bits (278), Expect(2) = 5e-43
Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 243 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYE 302
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+FV VYIDD+L+ S+T K+ +HL+L +K
Sbjct: 303 WLVMPLGLKNAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKDHIAHLELFFRKVEQ 362
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 363 NGLILSKKK 371
Score = 94.7 bits (234), Expect(2) = 5e-43
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 153 QIIGEIPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRES 212
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 213 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 243
>tpd|FAA00006.1| TPA: hypothetical protein [Rice tungro bacilliform virus]
Length = 1711
Score = 110 bits (275), Expect(2) = 1e-42
Identities = 62/129 (48%), Positives = 80/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT---*SFE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 1341 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYE 1400
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+FV VYIDD+L+ S+T K +HL+L +K
Sbjct: 1401 WLVMPLGLKNAPALFQRKMQNIFNDNQEFVLVYIDDLLIFSKTYKXHIAHLELFFRKVEQ 1460
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 1461 NGLILSKKK 1469
Score = 94.7 bits (234), Expect(2) = 1e-42
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 1251 QIIGEIPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRES 1310
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 1311 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 1341
>tpd|FAA01211.1| TPA: orf y [Oryza sativa Japonica Group]
Length = 1710
Score = 109 bits (273), Expect(2) = 2e-42
Identities = 61/129 (47%), Positives = 80/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT---*SFE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQ++M SI WT FT +E
Sbjct: 1340 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQIKMAEESIEWTAFTCPQGHYE 1399
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+F+ V IDD+LV SRT KE +HL++ +K
Sbjct: 1400 WLVMPLGLKNAPAIFQRKMQNIFNENQEFILVXIDDLLVFSRTYKEHIAHLEIFFRKVEQ 1459
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 1460 NGLILSKKK 1468
Score = 94.7 bits (234), Expect(2) = 2e-42
Identities = 45/91 (49%), Positives = 61/91 (67%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I EFK+HI+ LLKLG IR S
Sbjct: 1250 QIIGEIPMKYWEKNAIECKINIINPEYIIKTSPIEATPKDIEEFKMHIEELLKLGAIRES 1309
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++I+Y+ L
Sbjct: 1310 RSPHRSAAFIVRNHAEEVRGKSRMVINYKRL 1340
>gb|AAU10730.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1326
Score = 111 bits (277), Expect(2) = 2e-41
Identities = 62/129 (48%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT---*SFE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 923 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKTGFWQVKMAEESIEWTAFTCPQGHYE 982
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+F+ VYI+D+LV SRT KE +HL++ +K
Sbjct: 983 WLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYINDLLVFSRTYKEHIAHLEIFFRKVEQ 1042
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 1043 NGLILSKKK 1051
Score = 89.7 bits (221), Expect(2) = 2e-41
Identities = 43/91 (47%), Positives = 60/91 (65%)
Frame = +1
Query: 622 KIFNSDPQNHWSKNNIVCTFKIKDPDFRIVNKKISATNENIAEFKIHIDGLLKLGVIRRS 801
+I P +W KN I C I +P++ I I AT ++I +FK+HI+ LLKLG IR S
Sbjct: 833 QIIGEIPMIYWEKNAIECKINIINPEYIIKTSPIEATPKDIEQFKMHIEELLKLGAIRES 892
Query: 802 TSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
SPHRS AFIV H+E++RGK R++ +Y+ L
Sbjct: 893 RSPHRSAAFIVRNHAEEVRGKSRMVKNYKRL 923
>gb|KYP64476.1| Putative polyprotein [Cajanus cajan]
Length = 343
Score = 103 bits (257), Expect(2) = 2e-37
Identities = 63/129 (48%), Positives = 75/129 (58%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N D Y I K LIN IQ++ FSKFD KS F QV+M+ +SI WT F+ S FE
Sbjct: 193 LNDNTHIDGYTIPSKDVLINRIQKAKWFSKFDLKSGFHQVKMHPDSIKWTAFSCSERLFE 252
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
VMPFGLK P FQRK Y+ F YIDD+LV S+T++E HLK VL F
Sbjct: 253 WKVMPFGLKNAPQIFQRKMDNIFGDYKDFTCTYIDDVLVFSKTKEEHFLHLKQVLHLFEK 312
Query: 1242 NEIIVLGQK 1268
+IV K
Sbjct: 313 YGLIVSKSK 321
Score = 84.3 bits (207), Expect(2) = 2e-37
Identities = 46/94 (48%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Frame = +1
Query: 616 KKKIFNSDPQNHWSKNNIVCTFKIK-DPDFRIVNKKISATNENIAEFKIHIDGLLKLGVI 792
K I DP +W K+ ++C I + DF I K I N E +IHI LL L VI
Sbjct: 100 KSSIIGEDPTRYWEKDPVICKLDIIINHDFIIKTKDIPYGNFEQEECRIHIKALLDLKVI 159
Query: 793 RRSTSPHRSPAFIVNKHSEQIRGKFRIMIDYRPL 894
STSPHRSP FIVNKHSEQ RGK R++ +Y+ L
Sbjct: 160 EPSTSPHRSPVFIVNKHSEQKRGKTRMVYNYKRL 193
>gb|AAP53052.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1183
Score = 114 bits (284), Expect(2) = 1e-36
Identities = 63/129 (48%), Positives = 81/129 (62%), Gaps = 3/129 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN N +D Y+I +K E IN IQ S FSKFD K+ FWQV+M SI WT FT +E
Sbjct: 768 LNDNTIEDAYNIPNKQEWINRIQGSKYFSKFDLKAGFWQVKMAEESIEWTAFTCPQGHYE 827
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHLKLVLQKFYT 1241
LVMP GLK P+ FQRK + Q+F+ VYIDD+LV SRT KE +HL++ +K
Sbjct: 828 WLVMPLGLKNAPAIFQRKMQNIFNENQEFILVYIDDLLVFSRTYKEHIAHLEIFFRKVEQ 887
Query: 1242 NEIIVLGQK 1268
N +I+ +K
Sbjct: 888 NRLILSKKK 896
Score = 71.2 bits (173), Expect(2) = 1e-36
Identities = 34/62 (54%), Positives = 46/62 (74%)
Frame = +1
Query: 709 VNKKISATNENIAEFKIHIDGLLKLGVIRRSTSPHRSPAFIVNKHSEQIRGKFRIMIDYR 888
++K + E+I EFK+HI+ LLKLG IR S SPHRS AFIV H E++RGK R++I+Y+
Sbjct: 707 ISKPNRSNFEDIEEFKMHIEELLKLGAIRESRSPHRSAAFIVRNHVEEVRGKSRMIINYK 766
Query: 889 PL 894
L
Sbjct: 767 RL 768
>gb|ATZ69506.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus]
Length = 1839
Score = 88.2 bits (217), Expect(2) = 9e-31
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN D+Y + ++ I ++ I+SKFD KS F Q+ M+ SIPWT F +E
Sbjct: 1335 LNDLTHKDQYSLPGIQSILARIGQAKIYSKFDLKSGFHQIAMHPESIPWTAFWVPQGLYE 1394
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHL 1214
LVMPFG+K P+ FQRK + ++F+ VYIDDI++ S TEK+ HL
Sbjct: 1395 WLVMPFGIKNAPAIFQRKMDHCFAGMEEFIAVYIDDIIIFSETEKQHEEHL 1445
Score = 77.0 bits (188), Expect(2) = 9e-31
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 9/103 (8%)
Frame = +1
Query: 613 LKKKIF-NSDPQNHWSKNNIVCTFKIKDPDFRIVNKKI-SATNENIAEFKIHIDGLLKLG 786
LK++ F +P HWSKN + C IK+PD + +K + + T ++K H+D LLKLG
Sbjct: 1233 LKQQGFIGENPLQHWSKNRVTCYLDIKNPDLTVEDKPLDNVTPTQKEQYKRHVDALLKLG 1292
Query: 787 VIRRSTSPHRSPAFIVNKHS-------EQIRGKFRIMIDYRPL 894
VIR STS HR+ AFIVN + E+ +GK R++ +Y+ L
Sbjct: 1293 VIRESTSRHRTNAFIVNSGTTIDPVTGEEKKGKERMVFNYKRL 1335
>gb|ATZ69514.1| ORF3 polyprotein [Cacao swollen shoot Ghana R virus]
Length = 1833
Score = 88.2 bits (217), Expect(2) = 9e-31
Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 3/111 (2%)
Frame = +3
Query: 891 LNYNIDDDKYDISDKMELINSIQESNIFSKFDCKSRFWQVRMYGNSIPWTTFT*S---FE 1061
LN D+Y + ++ I ++ I+SKFD KS F Q+ M+ SIPWT F +E
Sbjct: 1329 LNDLTHKDQYSLPGIQSILARIGQAKIYSKFDLKSGFHQIAMHPESIPWTAFWVPQGLYE 1388
Query: 1062 *LVMPFGLKIVPSFFQRKNG*YSSTYQKFVYVYIDDILVHSRTEKEQTSHL 1214
LVMPFG+K P+ FQRK + ++F+ VYIDDI++ S TEK+ HL
Sbjct: 1389 WLVMPFGIKNAPAIFQRKMDHCFTGMEEFIAVYIDDIIIFSETEKQHEEHL 1439
Score = 77.0 bits (188), Expect(2) = 9e-31
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 9/103 (8%)
Frame = +1
Query: 613 LKKKIF-NSDPQNHWSKNNIVCTFKIKDPDFRIVNKKI-SATNENIAEFKIHIDGLLKLG 786
LK++ F +P HWSKN + C IK+PD + +K + + T ++K H+D LLKLG
Sbjct: 1227 LKQQGFIGENPLQHWSKNRVTCYLDIKNPDLTVEDKPLDNVTPTQKEQYKRHVDALLKLG 1286
Query: 787 VIRRSTSPHRSPAFIVNKHS-------EQIRGKFRIMIDYRPL 894
VIR STS HR+ AFIVN + E+ +GK R++ +Y+ L
Sbjct: 1287 VIRESTSRHRTNAFIVNSGTTIDPVTGEEKKGKERMVFNYKRL 1329