BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00043778
         (3097 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV su...  1429   0.0  
ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV su...  1429   0.0  
ref|XP_017700627.1| PREDICTED: DNA-directed RNA polymerase IV su...  1221   0.0  
ref|XP_017700629.1| PREDICTED: DNA-directed RNA polymerase IV su...  1216   0.0  
ref|XP_019705595.1| PREDICTED: DNA-directed RNA polymerase IV su...  1215   0.0  
ref|XP_020084502.1| DNA-directed RNA polymerase IV subunit 1 iso...  1096   0.0  
ref|XP_020084500.1| DNA-directed RNA polymerase IV subunit 1 iso...  1096   0.0  
gb|OAY84267.1| DNA-directed RNA polymerase IV subunit 1 [Ananas ...  1078   0.0  
ref|XP_015692233.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   996   0.0  
ref|XP_015696685.1| PREDICTED: DNA-directed RNA polymerase IV su...   988   0.0  
gb|PAN38258.1| hypothetical protein PAHAL_G00276 [Panicum hallii]     985   0.0  
ref|XP_015611695.1| PREDICTED: DNA-directed RNA polymerase IV su...   978   0.0  
ref|XP_015611694.1| PREDICTED: DNA-directed RNA polymerase IV su...   978   0.0  
ref|XP_015611693.1| PREDICTED: DNA-directed RNA polymerase IV su...   978   0.0  
ref|XP_015611692.1| PREDICTED: DNA-directed RNA polymerase IV su...   978   0.0  
ref|XP_022682777.1| DNA-directed RNA polymerase IV subunit 1 iso...   974   0.0  
ref|XP_004970758.1| DNA-directed RNA polymerase IV subunit 1 iso...   974   0.0  
ref|XP_012701776.1| DNA-directed RNA polymerase IV subunit 1 iso...   974   0.0  
ref|XP_022682776.1| DNA-directed RNA polymerase IV subunit 1 iso...   974   0.0  
ref|XP_004970757.1| DNA-directed RNA polymerase IV subunit 1 iso...   974   0.0  

>ref|XP_009411452.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Musa
            acuminata subsp. malaccensis]
          Length = 1562

 Score = 1429 bits (3700), Expect = 0.0
 Identities = 722/1037 (69%), Positives = 840/1037 (81%), Gaps = 5/1037 (0%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKLRXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            EFRHHQQFGPLATSYTM RVLDC+N SKL               +RWLKDVVLSKR+DN 
Sbjct: 334  EFRHHQQFGPLATSYTMSRVLDCFNASKLHASSSSRGDSTSG--IRWLKDVVLSKRTDNV 391

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FRMTMVGDPKI L E+GIP DI+  L V E++NSYNLEKLNM CN+ LL        K  
Sbjct: 392  FRMTMVGDPKIKLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCNLHLLR-------KEG 444

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            +  RSK +LTSL KTNQL+VGD++ RPLENGD ILVNRPPSVHQHSLI LSV ILPI+SV
Sbjct: 445  LNTRSKGQLTSLHKTNQLQVGDIVSRPLENGDIILVNRPPSVHQHSLIALSVMILPIQSV 504

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            +SINPLCCAPLLGDFDGDCLHGY+PQS+ CRVELQEL+SL HQLFNAQDGRSLVSLTHDS
Sbjct: 505  ISINPLCCAPLLGDFDGDCLHGYVPQSIGCRVELQELLSLDHQLFNAQDGRSLVSLTHDS 564

Query: 2376 LTAAYLLTATKEFLTKFEMQQXXXXXXXXXXXXXXXXXPNFQTPLWTGEQLFGLLLPPTF 2197
            LTAAYLLTA +EFL K +MQQ                 P FQ PLWTGEQLF +LLPPT 
Sbjct: 565  LTAAYLLTANREFLNKVDMQQLAMLCPFPMPPPAVVKTPKFQIPLWTGEQLFSMLLPPTM 624

Query: 2196 DFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCEYL 2017
            DF  +S+N+ I KGEVMA    SF  + T + LF+++FK  G KAL+Y+ CSQ+LLCEYL
Sbjct: 625  DFGVNSRNM-ISKGEVMASLGGSFWLQNTTTGLFTTMFKHYGRKALDYLCCSQELLCEYL 683

Query: 2016 SLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNPEIQNLPYHYQDE 1837
            +LRG +VSL D+YL+SDSYSR KM+DEIYFGLEEAED CQV QL+L PE++ L    +DE
Sbjct: 684  TLRGLSVSLGDVYLSSDSYSRLKMMDEIYFGLEEAEDACQVMQLMLEPEMEILRNQNKDE 743

Query: 1836 DISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKGSLP 1657
            D   C+SQYK AS+R  VSQ+SIAAFK+V+ DLL  + QF+NKDNSML MIDAGSKGSL 
Sbjct: 744  DTLDCISQYKIASERTCVSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMIDAGSKGSLV 803

Query: 1656 KLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGSYCSQSFFAVVNTS 1477
            KLIQQGACLGLQL A PLPF VP KL C MWNN KA D  + DAA S C QS +AV+ TS
Sbjct: 804  KLIQQGACLGLQLFAHPLPFTVPSKLNCCMWNNLKALDGGISDAAKSSCGQSSYAVIGTS 863

Query: 1476 FLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNGQQLV 1297
            FLDGLNPLE  VHAICGR+NLF+ENAE+PGTLTRKLM++MRD+Y+AYDGTVR+  GQQ+V
Sbjct: 864  FLDGLNPLECFVHAICGRANLFTENAELPGTLTRKLMFYMRDLYLAYDGTVRSAYGQQIV 923

Query: 1296 EFSYSMLEDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPINTLED 1117
            EFSYS+LEDST+ GE   AY+ K+ +Y+GLGG+PVGS AACSISE AY +L+ P+N+LE 
Sbjct: 924  EFSYSILEDSTEGGESCVAYDGKDAEYTGLGGEPVGSWAACSISEAAYGSLEFPMNSLEY 983

Query: 1116 SPLLKLKNVLECSKSSAST--VAFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSDLIVT 943
            SPL+KLK VL+C KS+AST   A LFLSKRL GWRYG EYGALEVKNHLERV F +LI+T
Sbjct: 984  SPLMKLKMVLDCCKSNASTNHTALLFLSKRLHGWRYGCEYGALEVKNHLERVCFFNLIIT 1043

Query: 942  VLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDMMLPR 763
            V+I YDG DVQGTN SPW MHFH+SKD ++R+RLN+Q +KNEL K Y+  RE+++ MLPR
Sbjct: 1044 VMILYDGHDVQGTNFSPWIMHFHVSKDKMLRRRLNVQLVKNELIKHYNCMRERMNPMLPR 1103

Query: 762  LCFLSKNCSSVK--QKDDDTFCITIAAETSELQVQLETVRDRVIPLLLATHIKGFWASEK 589
            LCF+SKNCSS    ++ DD+FC+++AAETSE  +QL+T+RD VIPLLL T IKGFWASEK
Sbjct: 1104 LCFVSKNCSSAYKWKEHDDSFCMSVAAETSESLIQLDTIRDMVIPLLLETPIKGFWASEK 1163

Query: 588  VEVLCESLPASGAELFLKVTMSKN-LRGSFWNALQNACIPMMDLIDWKRSHPNNTYNVCS 412
            VE+LCESLP SG+ELFL+VTMSK  L GSFW+ LQ+ACIP+MDLIDW+ SHP+N YN+  
Sbjct: 1164 VEILCESLPGSGSELFLRVTMSKKCLPGSFWSDLQDACIPIMDLIDWQCSHPDNVYNISG 1223

Query: 411  TYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQRDDMS 232
            TYGIDAAWKYFVKSLKSVTADIGRDI KRHL M ADCLS TGEFHGLSTKGLRQQR+DMS
Sbjct: 1224 TYGIDAAWKYFVKSLKSVTADIGRDIHKRHLFMAADCLSVTGEFHGLSTKGLRQQRNDMS 1283

Query: 231  ISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAGKVPK 52
            ISSPF QACLS+P NCF+NAAK GS+D LSGTLDAVAWGKEAP GTGGPF+I+Y+GKV  
Sbjct: 1284 ISSPFAQACLSNPVNCFVNAAKQGSMDHLSGTLDAVAWGKEAPSGTGGPFEIVYSGKVHN 1343

Query: 51   LNRSESMYKHLLNLKAQ 1
            L R E +YK+L ++KA+
Sbjct: 1344 LTRGEGIYKNLHSIKAE 1360


>ref|XP_009411449.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
            acuminata subsp. malaccensis]
 ref|XP_009411450.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa
            acuminata subsp. malaccensis]
          Length = 1569

 Score = 1429 bits (3700), Expect = 0.0
 Identities = 722/1037 (69%), Positives = 840/1037 (81%), Gaps = 5/1037 (0%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKLRXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            EFRHHQQFGPLATSYTM RVLDC+N SKL               +RWLKDVVLSKR+DN 
Sbjct: 341  EFRHHQQFGPLATSYTMSRVLDCFNASKLHASSSSRGDSTSG--IRWLKDVVLSKRTDNV 398

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FRMTMVGDPKI L E+GIP DI+  L V E++NSYNLEKLNM CN+ LL        K  
Sbjct: 399  FRMTMVGDPKIKLQEIGIPFDISESLIVAEQVNSYNLEKLNMSCNLHLLR-------KEG 451

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            +  RSK +LTSL KTNQL+VGD++ RPLENGD ILVNRPPSVHQHSLI LSV ILPI+SV
Sbjct: 452  LNTRSKGQLTSLHKTNQLQVGDIVSRPLENGDIILVNRPPSVHQHSLIALSVMILPIQSV 511

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            +SINPLCCAPLLGDFDGDCLHGY+PQS+ CRVELQEL+SL HQLFNAQDGRSLVSLTHDS
Sbjct: 512  ISINPLCCAPLLGDFDGDCLHGYVPQSIGCRVELQELLSLDHQLFNAQDGRSLVSLTHDS 571

Query: 2376 LTAAYLLTATKEFLTKFEMQQXXXXXXXXXXXXXXXXXPNFQTPLWTGEQLFGLLLPPTF 2197
            LTAAYLLTA +EFL K +MQQ                 P FQ PLWTGEQLF +LLPPT 
Sbjct: 572  LTAAYLLTANREFLNKVDMQQLAMLCPFPMPPPAVVKTPKFQIPLWTGEQLFSMLLPPTM 631

Query: 2196 DFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCEYL 2017
            DF  +S+N+ I KGEVMA    SF  + T + LF+++FK  G KAL+Y+ CSQ+LLCEYL
Sbjct: 632  DFGVNSRNM-ISKGEVMASLGGSFWLQNTTTGLFTTMFKHYGRKALDYLCCSQELLCEYL 690

Query: 2016 SLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNPEIQNLPYHYQDE 1837
            +LRG +VSL D+YL+SDSYSR KM+DEIYFGLEEAED CQV QL+L PE++ L    +DE
Sbjct: 691  TLRGLSVSLGDVYLSSDSYSRLKMMDEIYFGLEEAEDACQVMQLMLEPEMEILRNQNKDE 750

Query: 1836 DISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKGSLP 1657
            D   C+SQYK AS+R  VSQ+SIAAFK+V+ DLL  + QF+NKDNSML MIDAGSKGSL 
Sbjct: 751  DTLDCISQYKIASERTCVSQVSIAAFKNVYHDLLSQIYQFINKDNSMLEMIDAGSKGSLV 810

Query: 1656 KLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGSYCSQSFFAVVNTS 1477
            KLIQQGACLGLQL A PLPF VP KL C MWNN KA D  + DAA S C QS +AV+ TS
Sbjct: 811  KLIQQGACLGLQLFAHPLPFTVPSKLNCCMWNNLKALDGGISDAAKSSCGQSSYAVIGTS 870

Query: 1476 FLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNGQQLV 1297
            FLDGLNPLE  VHAICGR+NLF+ENAE+PGTLTRKLM++MRD+Y+AYDGTVR+  GQQ+V
Sbjct: 871  FLDGLNPLECFVHAICGRANLFTENAELPGTLTRKLMFYMRDLYLAYDGTVRSAYGQQIV 930

Query: 1296 EFSYSMLEDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPINTLED 1117
            EFSYS+LEDST+ GE   AY+ K+ +Y+GLGG+PVGS AACSISE AY +L+ P+N+LE 
Sbjct: 931  EFSYSILEDSTEGGESCVAYDGKDAEYTGLGGEPVGSWAACSISEAAYGSLEFPMNSLEY 990

Query: 1116 SPLLKLKNVLECSKSSAST--VAFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSDLIVT 943
            SPL+KLK VL+C KS+AST   A LFLSKRL GWRYG EYGALEVKNHLERV F +LI+T
Sbjct: 991  SPLMKLKMVLDCCKSNASTNHTALLFLSKRLHGWRYGCEYGALEVKNHLERVCFFNLIIT 1050

Query: 942  VLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDMMLPR 763
            V+I YDG DVQGTN SPW MHFH+SKD ++R+RLN+Q +KNEL K Y+  RE+++ MLPR
Sbjct: 1051 VMILYDGHDVQGTNFSPWIMHFHVSKDKMLRRRLNVQLVKNELIKHYNCMRERMNPMLPR 1110

Query: 762  LCFLSKNCSSVK--QKDDDTFCITIAAETSELQVQLETVRDRVIPLLLATHIKGFWASEK 589
            LCF+SKNCSS    ++ DD+FC+++AAETSE  +QL+T+RD VIPLLL T IKGFWASEK
Sbjct: 1111 LCFVSKNCSSAYKWKEHDDSFCMSVAAETSESLIQLDTIRDMVIPLLLETPIKGFWASEK 1170

Query: 588  VEVLCESLPASGAELFLKVTMSKN-LRGSFWNALQNACIPMMDLIDWKRSHPNNTYNVCS 412
            VE+LCESLP SG+ELFL+VTMSK  L GSFW+ LQ+ACIP+MDLIDW+ SHP+N YN+  
Sbjct: 1171 VEILCESLPGSGSELFLRVTMSKKCLPGSFWSDLQDACIPIMDLIDWQCSHPDNVYNISG 1230

Query: 411  TYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQRDDMS 232
            TYGIDAAWKYFVKSLKSVTADIGRDI KRHL M ADCLS TGEFHGLSTKGLRQQR+DMS
Sbjct: 1231 TYGIDAAWKYFVKSLKSVTADIGRDIHKRHLFMAADCLSVTGEFHGLSTKGLRQQRNDMS 1290

Query: 231  ISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAGKVPK 52
            ISSPF QACLS+P NCF+NAAK GS+D LSGTLDAVAWGKEAP GTGGPF+I+Y+GKV  
Sbjct: 1291 ISSPFAQACLSNPVNCFVNAAKQGSMDHLSGTLDAVAWGKEAPSGTGGPFEIVYSGKVHN 1350

Query: 51   LNRSESMYKHLLNLKAQ 1
            L R E +YK+L ++KA+
Sbjct: 1351 LTRGEGIYKNLHSIKAE 1367


>ref|XP_017700627.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Phoenix dactylifera]
 ref|XP_017700628.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
            [Phoenix dactylifera]
          Length = 1567

 Score = 1221 bits (3158), Expect = 0.0
 Identities = 629/1039 (60%), Positives = 775/1039 (74%), Gaps = 7/1039 (0%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKLRXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            EFR HQQF PLATS+   RVLDC NVSKLR             GL+WLK+VVLSKRSDN 
Sbjct: 337  EFRQHQQFVPLATSFITSRVLDCLNVSKLRARNSSNGDSSCLSGLKWLKEVVLSKRSDNV 396

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FRMTMVGDPKI L ++GIP DI++ + ++E +N+YNLEKLNM CN+ LL        K +
Sbjct: 397  FRMTMVGDPKIKLGQIGIPFDISQNMYISEHVNTYNLEKLNMSCNLHLLT-------KEE 449

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            +  RSK +LTS++K+NQL+VGD +YRPLEN D ILVNRPPSVHQHSLI LSV+ILPI+SV
Sbjct: 450  LHSRSKGQLTSVRKSNQLQVGDTIYRPLENDDLILVNRPPSVHQHSLIALSVKILPIQSV 509

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            VSINPLCCAPLLGDFDGDCLHGY+PQSV CRVEL ELVSL HQL NAQDGRSLVSL+HDS
Sbjct: 510  VSINPLCCAPLLGDFDGDCLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDS 569

Query: 2376 LTAAYLLTATKEFLTKFEMQQXXXXXXXXXXXXXXXXXPNFQTPLWTGEQLFGLLLPPTF 2197
            LTAA+LLT +  FL KFEMQQ                 P  ++PLWTG+QLF +LLPPT 
Sbjct: 570  LTAAHLLTNSIVFLNKFEMQQFEMLCPSQSPSPSIIKAPTTRSPLWTGQQLFSMLLPPTM 629

Query: 2196 DFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCEYL 2017
            DF   S  I I KGEV++    SF  + T SS+FSS+FK  G KAL++++ +Q++LCEYL
Sbjct: 630  DFSMGSNKIPISKGEVLSTSGASFWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYL 689

Query: 2016 SLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNPEIQNLPYHYQDE 1837
            + RG +VSL D+YL+SD YSRRKM DE+ +GLEEAED C +KQL+L+PE++ L   +   
Sbjct: 690  TTRGLSVSLGDVYLSSDLYSRRKMTDEVCYGLEEAEDACHIKQLMLDPEMEFLLKSHD-- 747

Query: 1836 DISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKGSLP 1657
                C + Y  A  +  +SQ SIAAF+DVF DL  V+ Q++++DNSMLAMI AGSKGSL 
Sbjct: 748  --GTCRNPYNYARNQKHISQFSIAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLS 805

Query: 1656 KLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRL-FDAAGSYCSQSFFAVVNT 1480
            KL+QQGACLGLQL A PLPF +P +L+C   N QK  +  +  D       Q+ +AVV  
Sbjct: 806  KLVQQGACLGLQLPASPLPFRIPRRLSCVSLNAQKKLEYGIPQDVVECVRGQNSYAVVKA 865

Query: 1479 SFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNGQQL 1300
            SFLDGLNPLE  VHAI GRSN+FSENAE+PG LTRKLM++MRD+Y AYDGTVR+  GQQL
Sbjct: 866  SFLDGLNPLECFVHAITGRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQL 925

Query: 1299 VEFSYSML-EDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPINTL 1123
            V+FSY++  E S++ G+      +K+ + + LGGQPVGS A+C+ISE AY ALD P+N+L
Sbjct: 926  VQFSYNIPGESSSEQGDSCTMNGEKDAENNRLGGQPVGSWASCAISEAAYGALDHPMNSL 985

Query: 1122 EDSPLLKLKNVLECSKSSAST--VAFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSDLI 949
            E SPLL LK VLEC KS AS    A +FLSK L+  RYGFEYGALEVKNHL+RV+FSDL+
Sbjct: 986  EASPLLNLKKVLECGKSRASVDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLV 1045

Query: 948  VTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDMML 769
             TVLI Y GLDVQGT  SPW  HFH+SK+ +MRKRL +Q I ++L   Y+  RE +   L
Sbjct: 1046 TTVLIFYAGLDVQGTKFSPWITHFHVSKERMMRKRLRVQTIIDQLSANYNFVRETVGTEL 1105

Query: 768  PRLCFLSKNCS--SVKQKDDDTFCITIAAETSELQVQLETVRDRVIPLLLATHIKGFWAS 595
            P L   SK+CS   ++ + D+TFCI +  +T E ++QL+T+RD ++PLLL T +KGFW  
Sbjct: 1106 PGLRITSKDCSLIDIQNEHDETFCIMVLVDTPESEIQLDTIRDVLVPLLLETLVKGFWEF 1165

Query: 594  EKVEVLCESLPASGAELFLKVTMS-KNLRGSFWNALQNACIPMMDLIDWKRSHPNNTYNV 418
            +KVE+LC+  P S  ELFL+V+MS K L G FW+ALQNACIP+MDLIDW+ SHPN+ Y++
Sbjct: 1166 KKVEILCDIQPDSLDELFLRVSMSEKCLPGKFWSALQNACIPIMDLIDWEHSHPNSMYDI 1225

Query: 417  CSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQRDD 238
             S YGIDAAWKYF++ LKS T+D GR I + HL+M ADCLS TGEFHGLS KGL++QRD 
Sbjct: 1226 FSIYGIDAAWKYFLRHLKSATSDTGRCIHEEHLLMAADCLSVTGEFHGLSIKGLKKQRDQ 1285

Query: 237  MSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAGKV 58
             SISSPFT ACLS+P   FINAAK GSVD L GTLDA+AWGKEAPVGTGGPF+IIY+GKV
Sbjct: 1286 ASISSPFTLACLSNPGYGFINAAKQGSVDHLGGTLDAMAWGKEAPVGTGGPFEIIYSGKV 1345

Query: 57   PKLNRSESMYKHLLNLKAQ 1
                ++E++YK LLN K +
Sbjct: 1346 HNPQKTENIYKTLLNFKVE 1364


>ref|XP_017700629.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
            [Phoenix dactylifera]
          Length = 1566

 Score = 1216 bits (3146), Expect = 0.0
 Identities = 629/1039 (60%), Positives = 775/1039 (74%), Gaps = 7/1039 (0%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKLRXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            EFR HQQF PLATS+   RVLDC NVSKLR             GL+WLK+VVLSKRSDN 
Sbjct: 337  EFRQHQQFVPLATSFITSRVLDCLNVSKLRARNSSNGDSSCLSGLKWLKEVVLSKRSDNV 396

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FRMTMVGDPKI L ++GIP DI++ + ++E +N+YNLEKLNM CN+ LL        K +
Sbjct: 397  FRMTMVGDPKIKLGQIGIPFDISQNMYISEHVNTYNLEKLNMSCNLHLLT-------KEE 449

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            +  RSK +LTS++K+NQL+VGD +YRPLEN D ILVNRPPSVHQHSLI LSV+ILPI+SV
Sbjct: 450  LHSRSKGQLTSVRKSNQLQVGDTIYRPLENDDLILVNRPPSVHQHSLIALSVKILPIQSV 509

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            VSINPLCCAPLLGDFDGDCLHGY+PQSV CRVEL ELVSL HQL NAQDGRSLVSL+HDS
Sbjct: 510  VSINPLCCAPLLGDFDGDCLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDS 569

Query: 2376 LTAAYLLTATKEFLTKFEMQQXXXXXXXXXXXXXXXXXPNFQTPLWTGEQLFGLLLPPTF 2197
            LTAA+LLT +  FL KFEMQQ                 P  ++PLWTG+QLF +LLPPT 
Sbjct: 570  LTAAHLLTNSIVFLNKFEMQQFEMLCPSQSPSPSIIKAPTTRSPLWTGQQLFSMLLPPTM 629

Query: 2196 DFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCEYL 2017
            DF   S  I I KGEV++    SF  + T SS+FSS+FK  G KAL++++ +Q++LCEYL
Sbjct: 630  DFSMGSNKIPISKGEVLSTSGASFWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYL 689

Query: 2016 SLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNPEIQNLPYHYQDE 1837
            + RG +VSL D+YL+SD YSRRKM DE+ +GLEEAED C +KQL+L+PE++ L   +   
Sbjct: 690  TTRGLSVSLGDVYLSSDLYSRRKMTDEVCYGLEEAEDACHIKQLMLDPEMEFLLKSHD-- 747

Query: 1836 DISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKGSLP 1657
                C + Y  A  +  +SQ SIAAF+DVF DL  V+ Q++++DNSMLAMI AGSKGSL 
Sbjct: 748  --GTCRNPYNYARNQKHISQFSIAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLS 805

Query: 1656 KLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRL-FDAAGSYCSQSFFAVVNT 1480
            KL+QQGACLGLQL A PLPF +P +L+C   N QK  +  +  D       Q+ +AVV  
Sbjct: 806  KLVQQGACLGLQLPASPLPFRIPRRLSCVSLNAQKKLEYGIPQDVVECVRGQNSYAVVKA 865

Query: 1479 SFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNGQQL 1300
            SFLDGLNPLE  VHAI GRSN+FSENAE+PG LTRKLM++MRD+Y AYDGTVR+  GQQL
Sbjct: 866  SFLDGLNPLECFVHAITGRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQL 925

Query: 1299 VEFSYSML-EDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPINTL 1123
            V+FSY++  E S++ G+      +K+ + + LGGQPVGS A+C+ISE AY ALD P+N+L
Sbjct: 926  VQFSYNIPGESSSEQGDSCTMNGEKDAENNRLGGQPVGSWASCAISEAAYGALDHPMNSL 985

Query: 1122 EDSPLLKLKNVLECSKSSAST--VAFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSDLI 949
            E SPLL LK VLEC KS AS    A +FLSK L+  RYGFEYGALEVKNHL+RV+FSDL+
Sbjct: 986  EASPLLNLK-VLECGKSRASVDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLV 1044

Query: 948  VTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDMML 769
             TVLI Y GLDVQGT  SPW  HFH+SK+ +MRKRL +Q I ++L   Y+  RE +   L
Sbjct: 1045 TTVLIFYAGLDVQGTKFSPWITHFHVSKERMMRKRLRVQTIIDQLSANYNFVRETVGTEL 1104

Query: 768  PRLCFLSKNCS--SVKQKDDDTFCITIAAETSELQVQLETVRDRVIPLLLATHIKGFWAS 595
            P L   SK+CS   ++ + D+TFCI +  +T E ++QL+T+RD ++PLLL T +KGFW  
Sbjct: 1105 PGLRITSKDCSLIDIQNEHDETFCIMVLVDTPESEIQLDTIRDVLVPLLLETLVKGFWEF 1164

Query: 594  EKVEVLCESLPASGAELFLKVTMS-KNLRGSFWNALQNACIPMMDLIDWKRSHPNNTYNV 418
            +KVE+LC+  P S  ELFL+V+MS K L G FW+ALQNACIP+MDLIDW+ SHPN+ Y++
Sbjct: 1165 KKVEILCDIQPDSLDELFLRVSMSEKCLPGKFWSALQNACIPIMDLIDWEHSHPNSMYDI 1224

Query: 417  CSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQRDD 238
             S YGIDAAWKYF++ LKS T+D GR I + HL+M ADCLS TGEFHGLS KGL++QRD 
Sbjct: 1225 FSIYGIDAAWKYFLRHLKSATSDTGRCIHEEHLLMAADCLSVTGEFHGLSIKGLKKQRDQ 1284

Query: 237  MSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAGKV 58
             SISSPFT ACLS+P   FINAAK GSVD L GTLDA+AWGKEAPVGTGGPF+IIY+GKV
Sbjct: 1285 ASISSPFTLACLSNPGYGFINAAKQGSVDHLGGTLDAMAWGKEAPVGTGGPFEIIYSGKV 1344

Query: 57   PKLNRSESMYKHLLNLKAQ 1
                ++E++YK LLN K +
Sbjct: 1345 HNPQKTENIYKTLLNFKVE 1363


>ref|XP_019705595.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Elaeis
            guineensis]
          Length = 1569

 Score = 1215 bits (3143), Expect = 0.0
 Identities = 621/1039 (59%), Positives = 774/1039 (74%), Gaps = 7/1039 (0%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKLRXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            EFR HQQF PLATS+   RVLDC NVSKLR             GL+WLKDVVLSKRSDNA
Sbjct: 337  EFRQHQQFVPLATSFITNRVLDCLNVSKLRTRNSSNGDSSCLSGLKWLKDVVLSKRSDNA 396

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FRMTM+GDPKI L ++GIP D+++ L V+E +N+YNLEKLNM CN+ LL +        +
Sbjct: 397  FRMTMIGDPKIKLGQIGIPFDLSQNLCVSEHVNAYNLEKLNMSCNLHLLTN-------EE 449

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            +  RSK  LTS++K+NQL++GD +YRPLENGD ILVNRPPSVHQHSLI LS +ILPI+SV
Sbjct: 450  LHTRSKGRLTSVRKSNQLQIGDTIYRPLENGDLILVNRPPSVHQHSLIALSAKILPIQSV 509

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            VSINPLCCAPLLGDFDGDCLHGY+PQSV CRVEL ELVSL HQL NAQDGRSLVSL+HDS
Sbjct: 510  VSINPLCCAPLLGDFDGDCLHGYVPQSVHCRVELGELVSLDHQLLNAQDGRSLVSLSHDS 569

Query: 2376 LTAAYLLTATKEFLTKFEMQQXXXXXXXXXXXXXXXXXPNFQTPLWTGEQLFGLLLPPTF 2197
            LTAA+LLT+   FL KFEMQQ                 P  + PLWTG+QLF ++LPP  
Sbjct: 570  LTAAHLLTSNIVFLNKFEMQQLEMLCFSRLPFPSIIKAPTTRFPLWTGQQLFSMVLPPAM 629

Query: 2196 DFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCEYL 2017
            DF      I I KGEV++   VS   + T SS+FSS+FK  G KAL++++ +Q++LCEYL
Sbjct: 630  DFSMGPNKIQISKGEVLSTSGVSSWLQNTTSSIFSSMFKCYGRKALDFLFSAQEVLCEYL 689

Query: 2016 SLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNPEIQNLPYHYQDE 1837
            + RG +VSL D+YL+SD YSRRKM DE+++GLEEAED C +KQ++L+PE++ L   ++  
Sbjct: 690  TTRGLSVSLGDVYLSSDLYSRRKMTDEVFYGLEEAEDACHIKQIMLDPEMEFL---FKSH 746

Query: 1836 DISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKGSLP 1657
            D     + Y  A  R  +SQ S+AAF+DVF DL  V+ Q++++DNSMLAMI AGSKGSL 
Sbjct: 747  D-GTYRNLYNYARNRKHISQFSVAAFRDVFYDLQNVIHQYISRDNSMLAMIHAGSKGSLS 805

Query: 1656 KLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRL-FDAAGSYCSQSFFAVVNT 1480
            KL+QQGACLGLQL + PLPF +P +L+C  WN QK  +  +  D       Q+ +AVV  
Sbjct: 806  KLVQQGACLGLQLPSSPLPFRIPRRLSCVSWNAQKKSEHGIPQDVVECAGGQNSYAVVKA 865

Query: 1479 SFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNGQQL 1300
            SFLDGLNPLE  VHAI GRSN+FSENAE+PG LTRKLM++MRD+Y AYDGTVR+  GQQL
Sbjct: 866  SFLDGLNPLECFVHAITGRSNMFSENAELPGMLTRKLMFYMRDLYAAYDGTVRSTYGQQL 925

Query: 1299 VEFSYSML-EDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPINTL 1123
            V+FSY++  + S + G+    Y + + + + LGGQPVGS AAC+ISE AY ALD P+N+L
Sbjct: 926  VQFSYNIPGKSSGEEGDSCMTYGENDAENNSLGGQPVGSWAACAISEAAYGALDHPMNSL 985

Query: 1122 EDSPLLKLKNVLECSKSSAST--VAFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSDLI 949
            E SPL+ LK VL+C K+ AS    A +FLSK L+  RYGFEYGALEVKNHL+RV+FSDL+
Sbjct: 986  EASPLMNLKKVLDCGKTKASMDKSASIFLSKGLKKQRYGFEYGALEVKNHLDRVLFSDLV 1045

Query: 948  VTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDMML 769
             T+LI Y GLDVQGT  SPW  HFH+SK+ +MRKRL  Q I ++L   Y+  RE +   L
Sbjct: 1046 TTILIFYAGLDVQGTKFSPWITHFHVSKERMMRKRLRAQTIIDQLSGNYNFVRETVGTEL 1105

Query: 768  PRLCFLSKNCS--SVKQKDDDTFCITIAAETSELQVQLETVRDRVIPLLLATHIKGFWAS 595
            P L   SK+CS   ++ + D+TFC+T+  +  +  +QL+T+RD +IPLLL T IKGFW  
Sbjct: 1106 PVLHISSKDCSLIDIQNEHDETFCVTVLVDAPKSDIQLDTIRDVIIPLLLETLIKGFWEF 1165

Query: 594  EKVEVLCESLPASGAELFLKVTMS-KNLRGSFWNALQNACIPMMDLIDWKRSHPNNTYNV 418
            +KVE+LC+    S   LFL+VTMS K L G FW+ALQNACIP+MDLIDW++SHPN+ Y++
Sbjct: 1166 KKVEILCDIQRDSLDGLFLRVTMSEKCLPGKFWSALQNACIPIMDLIDWEQSHPNSMYDI 1225

Query: 417  CSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQRDD 238
             S YGIDAAWKYF+K LKS T+DIGR + + HL+M ADCLS TGEFHGLSTKGL++QRD 
Sbjct: 1226 FSIYGIDAAWKYFLKYLKSATSDIGRCMHEEHLLMAADCLSVTGEFHGLSTKGLKKQRDQ 1285

Query: 237  MSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAGKV 58
             SISSPFT ACLS+P N FINAAK GSVD L GTLDA+AWGKEAP+GTGGPF+IIY+GKV
Sbjct: 1286 ASISSPFTLACLSNPGNGFINAAKQGSVDHLCGTLDAMAWGKEAPIGTGGPFEIIYSGKV 1345

Query: 57   PKLNRSESMYKHLLNLKAQ 1
                ++E++YK L+N K +
Sbjct: 1346 HNSQKNENIYKTLMNFKVE 1364


>ref|XP_020084502.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Ananas comosus]
          Length = 1240

 Score = 1096 bits (2834), Expect = 0.0
 Identities = 579/1047 (55%), Positives = 734/1047 (70%), Gaps = 15/1047 (1%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKLRXXXXXXXXXXXXXG-LRWLKDVVLSKRSDN 2920
            EFR H QF   A+SY   RV+DC N SKL                L+WLK+V+LSKRSD 
Sbjct: 35   EFRQHPQFRAFASSYVSNRVMDCLNASKLHSSTSNGEPISSGVSGLKWLKEVILSKRSDY 94

Query: 2919 AFRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKA 2740
            AFR+ MVGDPKI L E+GIP  +A  L +++ +NSYNLEKLN  CN+ LL       +K 
Sbjct: 95   AFRLVMVGDPKIKLDEIGIPLSLAENLLISDHVNSYNLEKLNTSCNLHLL-------NKE 147

Query: 2739 KIFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIES 2560
            ++  R   +L S++K +QL++GD+ YRPLENGD IL+NRPPSVHQHSLI LSV++LPI  
Sbjct: 148  ELHARRDGQLISVRKPDQLQIGDIFYRPLENGDLILINRPPSVHQHSLIALSVKVLPIHF 207

Query: 2559 VVSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHD 2380
             +SINPLCCAPLLGDFDGDCLHGYIPQS+  RVEL+ELV L  QL N+QDGRSLVSL+HD
Sbjct: 208  AISINPLCCAPLLGDFDGDCLHGYIPQSIPSRVELRELVGLDQQLLNSQDGRSLVSLSHD 267

Query: 2379 SLTAAYLLTATKEFLTKFEMQQXXXXXXXXXXXXXXXXXPNFQTPLWTGEQLFGLLLPPT 2200
            SL AAYLLT T  FL+K+EMQ                  PNF +PLWTG+QLFG+LLPP 
Sbjct: 268  SLVAAYLLTGTDVFLSKYEMQHLEMLCPSHMPFPSIIKYPNFGSPLWTGQQLFGMLLPPG 327

Query: 2199 FDFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCEY 2020
             DF   SK + I  GEV++ P +SF  + + SS+FS++FKS G +AL+++  +Q+LLCEY
Sbjct: 328  IDFSVDSKKLHIIDGEVLSSPQMSFWLQSSTSSIFSTMFKSYGRRALDFLCSAQELLCEY 387

Query: 2019 LSLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNPEIQNLPYHYQD 1840
            L++RG +VSLSD+YL SD YSR KM +E+ FGL+EAED C+VKQLLL+P I+ L     +
Sbjct: 388  LTMRGLSVSLSDLYLASDFYSRTKMTEEVNFGLDEAEDACRVKQLLLDPRIEFLLSSLDE 447

Query: 1839 -EDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKGS 1663
             ED S  +S Y   S    + + SIAAFKDVF D+   V  +V+KDNSML+MI +GSKGS
Sbjct: 448  CEDSSYSVSHYHFLSNNLQIRKASIAAFKDVFSDIQRTVYHYVSKDNSMLSMIQSGSKGS 507

Query: 1662 LPKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGSYCSQSFFAVVN 1483
            L KL QQ  CLGLQLSA   PF +P +L+C  WN QKA +    DA      ++F+AV+ 
Sbjct: 508  LSKLAQQSLCLGLQLSASTFPFRIPQQLSCSWWNKQKALECGDQDAIRCEERRNFYAVIR 567

Query: 1482 TSFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNGQQ 1303
            +SFL GLNPLE  +HAI GR+N F ENAE+PGTLTRKL +++RD+YVAYDGTVR+  GQQ
Sbjct: 568  SSFLQGLNPLECFLHAISGRANFFGENAEIPGTLTRKLSFYLRDLYVAYDGTVRSAYGQQ 627

Query: 1302 LVEFSYSMLEDSTDYGEIF--DAY-----NDKNTD-YSGLGGQPVGSLAACSISETAYAA 1147
            +V+FSY + +      EIF  DA+     ND   + Y+GLG  PVGS AA SISE AY  
Sbjct: 628  IVQFSYDISD------EIFHEDAHSRIISNDHIVEKYNGLGA-PVGSWAASSISEAAYGG 680

Query: 1146 LDLPINTLEDSPLLKLKNVLECSK--SSASTVAFLFLSKRLEGWRYGFEYGALEVKNHLE 973
            L+ P+N+LEDSPL+KLK +LEC K  +       L LSK L+ +RYGFEYGALEVKNHLE
Sbjct: 681  LEHPVNSLEDSPLMKLKEILECGKRRTYGDHAGILVLSKGLQRYRYGFEYGALEVKNHLE 740

Query: 972  RVMFSDLIVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNR 793
              +FS+++ TV+I Y+   +Q   ISPW+ HFH+SK+ L +KRL +Q + ++L + Y   
Sbjct: 741  ITLFSEMVNTVMILYE-CPLQRRKISPWSTHFHISKETLKKKRLQVQRVIDKLMENYSLM 799

Query: 792  REKIDMMLPRLCFLSKNCSSVKQKD--DDTFCITIAAETSELQVQLETVRDRVIPLLLAT 619
            REK   +LP LC   KNC  + + D  D T CI +AAE  +   QL+T++D VI +LL T
Sbjct: 800  REKSAGVLPALCITKKNCPLLDEHDELDQTVCIAVAAEVLDSVTQLDTIKDVVILILLNT 859

Query: 618  HIKGFWASEKVEVLCESLPASGAELFLKVTMSKNL-RGSFWNALQNACIPMMDLIDWKRS 442
             +KGF   + VE+ C+       EL LKVTMS++  RG FW+ LQ+ACIP+MDLIDW  S
Sbjct: 860  LVKGFLGIKHVEIQCQP---DSTELSLKVTMSESCSRGRFWSTLQDACIPIMDLIDWNSS 916

Query: 441  HPNNTYNVCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTK 262
            HP + Y+  + YGIDAAWKYF+KSLKS T+ IGR I +  L+  ADC S TGEFHGLSTK
Sbjct: 917  HPESIYDTFTVYGIDAAWKYFLKSLKSATSGIGRHIHQEQLVTVADCFSVTGEFHGLSTK 976

Query: 261  GLRQQRDDMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPF 82
            GL+QQR+ +SISSPF+ AC S P N FINAAK GSVD L G LDAV+WGKE PVGTGGPF
Sbjct: 977  GLKQQRNRLSISSPFSHACFSSPGNNFINAAKKGSVDELCGILDAVSWGKEPPVGTGGPF 1036

Query: 81   QIIYAGKVPKLNRSESMYKHLLNLKAQ 1
            +II++ KVP+L +SES+YK L NLK +
Sbjct: 1037 EIIFSQKVPQLQKSESIYKVLHNLKVE 1063


>ref|XP_020084500.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Ananas comosus]
 ref|XP_020084501.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Ananas comosus]
          Length = 1545

 Score = 1096 bits (2834), Expect = 0.0
 Identities = 579/1047 (55%), Positives = 734/1047 (70%), Gaps = 15/1047 (1%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKLRXXXXXXXXXXXXXG-LRWLKDVVLSKRSDN 2920
            EFR H QF   A+SY   RV+DC N SKL                L+WLK+V+LSKRSD 
Sbjct: 340  EFRQHPQFRAFASSYVSNRVMDCLNASKLHSSTSNGEPISSGVSGLKWLKEVILSKRSDY 399

Query: 2919 AFRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKA 2740
            AFR+ MVGDPKI L E+GIP  +A  L +++ +NSYNLEKLN  CN+ LL       +K 
Sbjct: 400  AFRLVMVGDPKIKLDEIGIPLSLAENLLISDHVNSYNLEKLNTSCNLHLL-------NKE 452

Query: 2739 KIFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIES 2560
            ++  R   +L S++K +QL++GD+ YRPLENGD IL+NRPPSVHQHSLI LSV++LPI  
Sbjct: 453  ELHARRDGQLISVRKPDQLQIGDIFYRPLENGDLILINRPPSVHQHSLIALSVKVLPIHF 512

Query: 2559 VVSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHD 2380
             +SINPLCCAPLLGDFDGDCLHGYIPQS+  RVEL+ELV L  QL N+QDGRSLVSL+HD
Sbjct: 513  AISINPLCCAPLLGDFDGDCLHGYIPQSIPSRVELRELVGLDQQLLNSQDGRSLVSLSHD 572

Query: 2379 SLTAAYLLTATKEFLTKFEMQQXXXXXXXXXXXXXXXXXPNFQTPLWTGEQLFGLLLPPT 2200
            SL AAYLLT T  FL+K+EMQ                  PNF +PLWTG+QLFG+LLPP 
Sbjct: 573  SLVAAYLLTGTDVFLSKYEMQHLEMLCPSHMPFPSIIKYPNFGSPLWTGQQLFGMLLPPG 632

Query: 2199 FDFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCEY 2020
             DF   SK + I  GEV++ P +SF  + + SS+FS++FKS G +AL+++  +Q+LLCEY
Sbjct: 633  IDFSVDSKKLHIIDGEVLSSPQMSFWLQSSTSSIFSTMFKSYGRRALDFLCSAQELLCEY 692

Query: 2019 LSLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNPEIQNLPYHYQD 1840
            L++RG +VSLSD+YL SD YSR KM +E+ FGL+EAED C+VKQLLL+P I+ L     +
Sbjct: 693  LTMRGLSVSLSDLYLASDFYSRTKMTEEVNFGLDEAEDACRVKQLLLDPRIEFLLSSLDE 752

Query: 1839 -EDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKGS 1663
             ED S  +S Y   S    + + SIAAFKDVF D+   V  +V+KDNSML+MI +GSKGS
Sbjct: 753  CEDSSYSVSHYHFLSNNLQIRKASIAAFKDVFSDIQRTVYHYVSKDNSMLSMIQSGSKGS 812

Query: 1662 LPKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGSYCSQSFFAVVN 1483
            L KL QQ  CLGLQLSA   PF +P +L+C  WN QKA +    DA      ++F+AV+ 
Sbjct: 813  LSKLAQQSLCLGLQLSASTFPFRIPQQLSCSWWNKQKALECGDQDAIRCEERRNFYAVIR 872

Query: 1482 TSFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNGQQ 1303
            +SFL GLNPLE  +HAI GR+N F ENAE+PGTLTRKL +++RD+YVAYDGTVR+  GQQ
Sbjct: 873  SSFLQGLNPLECFLHAISGRANFFGENAEIPGTLTRKLSFYLRDLYVAYDGTVRSAYGQQ 932

Query: 1302 LVEFSYSMLEDSTDYGEIF--DAY-----NDKNTD-YSGLGGQPVGSLAACSISETAYAA 1147
            +V+FSY + +      EIF  DA+     ND   + Y+GLG  PVGS AA SISE AY  
Sbjct: 933  IVQFSYDISD------EIFHEDAHSRIISNDHIVEKYNGLGA-PVGSWAASSISEAAYGG 985

Query: 1146 LDLPINTLEDSPLLKLKNVLECSK--SSASTVAFLFLSKRLEGWRYGFEYGALEVKNHLE 973
            L+ P+N+LEDSPL+KLK +LEC K  +       L LSK L+ +RYGFEYGALEVKNHLE
Sbjct: 986  LEHPVNSLEDSPLMKLKEILECGKRRTYGDHAGILVLSKGLQRYRYGFEYGALEVKNHLE 1045

Query: 972  RVMFSDLIVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNR 793
              +FS+++ TV+I Y+   +Q   ISPW+ HFH+SK+ L +KRL +Q + ++L + Y   
Sbjct: 1046 ITLFSEMVNTVMILYE-CPLQRRKISPWSTHFHISKETLKKKRLQVQRVIDKLMENYSLM 1104

Query: 792  REKIDMMLPRLCFLSKNCSSVKQKD--DDTFCITIAAETSELQVQLETVRDRVIPLLLAT 619
            REK   +LP LC   KNC  + + D  D T CI +AAE  +   QL+T++D VI +LL T
Sbjct: 1105 REKSAGVLPALCITKKNCPLLDEHDELDQTVCIAVAAEVLDSVTQLDTIKDVVILILLNT 1164

Query: 618  HIKGFWASEKVEVLCESLPASGAELFLKVTMSKNL-RGSFWNALQNACIPMMDLIDWKRS 442
             +KGF   + VE+ C+       EL LKVTMS++  RG FW+ LQ+ACIP+MDLIDW  S
Sbjct: 1165 LVKGFLGIKHVEIQCQP---DSTELSLKVTMSESCSRGRFWSTLQDACIPIMDLIDWNSS 1221

Query: 441  HPNNTYNVCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTK 262
            HP + Y+  + YGIDAAWKYF+KSLKS T+ IGR I +  L+  ADC S TGEFHGLSTK
Sbjct: 1222 HPESIYDTFTVYGIDAAWKYFLKSLKSATSGIGRHIHQEQLVTVADCFSVTGEFHGLSTK 1281

Query: 261  GLRQQRDDMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPF 82
            GL+QQR+ +SISSPF+ AC S P N FINAAK GSVD L G LDAV+WGKE PVGTGGPF
Sbjct: 1282 GLKQQRNRLSISSPFSHACFSSPGNNFINAAKKGSVDELCGILDAVSWGKEPPVGTGGPF 1341

Query: 81   QIIYAGKVPKLNRSESMYKHLLNLKAQ 1
            +II++ KVP+L +SES+YK L NLK +
Sbjct: 1342 EIIFSQKVPQLQKSESIYKVLHNLKVE 1368


>gb|OAY84267.1| DNA-directed RNA polymerase IV subunit 1 [Ananas comosus]
          Length = 1556

 Score = 1078 bits (2789), Expect = 0.0
 Identities = 573/1046 (54%), Positives = 730/1046 (69%), Gaps = 14/1046 (1%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKLRXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            EFR H QF   A+SY   R+    +  +               GL+WLK+V+LSKRSD A
Sbjct: 360  EFRQHPQFRAFASSYVSNRLHSSTSNGE--------PISSGVSGLKWLKEVILSKRSDYA 411

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FR+ MVGDPKI L E+GIP  +A  L +++ +NSYNLEKLN  CN+ LL       +K +
Sbjct: 412  FRLVMVGDPKIKLDEIGIPLSLAENLLISDHVNSYNLEKLNTSCNLHLL-------NKEE 464

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            +  R   +L S++K +QL++GD+ YRPLENGD IL+NRPPSVHQHSLI LSV++LPI   
Sbjct: 465  LHARRDGQLISVRKPDQLQIGDIFYRPLENGDLILINRPPSVHQHSLIALSVKVLPIHFA 524

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            +SINPLCCAPLLGDFDGDCLHGYIPQS+  RVEL+ELV L  QL N+QDGRSLVSL+HDS
Sbjct: 525  ISINPLCCAPLLGDFDGDCLHGYIPQSIPSRVELRELVGLDQQLLNSQDGRSLVSLSHDS 584

Query: 2376 LTAAYLLTATKEFLTKFEMQQXXXXXXXXXXXXXXXXXPNFQTPLWTGEQLFGLLLPPTF 2197
            L AAYLLT T  FL+K+EMQ                  PNF +PLWTG+QLFG+LLPP  
Sbjct: 585  LVAAYLLTGTDVFLSKYEMQHLEMLCPSHMPFPSIIKYPNFGSPLWTGQQLFGMLLPPGI 644

Query: 2196 DFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCEYL 2017
            DF   SK + I  GEV++ P +SF  + + SS+FS++FKS G +AL+++  +Q+LLCEYL
Sbjct: 645  DFSVDSKKLHIIDGEVLSSPQMSFWLQSSTSSIFSTMFKSYGRRALDFLCSAQELLCEYL 704

Query: 2016 SLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNPEIQNLPYHYQD- 1840
            ++RG +VSLSD+YL SD YSR KM +E+ FGL+EAED C+VKQLLL+P I+ L     + 
Sbjct: 705  TMRGLSVSLSDLYLASDFYSRTKMTEEVNFGLDEAEDACRVKQLLLDPRIEFLLSSLDEC 764

Query: 1839 EDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKGSL 1660
            ED S  +S Y   S    + + SIAAFKDVF D+   V  +V+KDNSML+MI +GSKGSL
Sbjct: 765  EDSSYSVSHYHFLSNNLQIRKASIAAFKDVFSDIQRTVYHYVSKDNSMLSMIQSGSKGSL 824

Query: 1659 PKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGSYCSQSFFAVVNT 1480
             KL QQ  CLGLQLSA   PF +P +L+C  WN QKA +    DA      ++F+AV+ +
Sbjct: 825  SKLAQQSLCLGLQLSASTFPFRIPQQLSCSWWNKQKALECGDQDAIRCEERRNFYAVIRS 884

Query: 1479 SFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNGQQL 1300
            SFL GLNPLE  +HAI GR+N F ENAE+PGTLTRKL +++RD+YVAYDGTVR+  GQQ+
Sbjct: 885  SFLQGLNPLECFLHAISGRANFFGENAEIPGTLTRKLSFYLRDLYVAYDGTVRSAYGQQI 944

Query: 1299 VEFSYSMLEDSTDYGEIF--DAY-----NDKNTD-YSGLGGQPVGSLAACSISETAYAAL 1144
            V+FSY + +      EIF  DA+     ND   + Y+GLG  PVGS AA SISE AY  L
Sbjct: 945  VQFSYDISD------EIFHEDAHSRIISNDHIVEKYNGLGA-PVGSWAASSISEAAYGGL 997

Query: 1143 DLPINTLEDSPLLKLKNVLECSK--SSASTVAFLFLSKRLEGWRYGFEYGALEVKNHLER 970
            + P+N+LEDSPL+KLK +LEC K  +       L LSK L+ +RYGFEYGALEVKNHLE 
Sbjct: 998  EHPVNSLEDSPLMKLKEILECGKRRTYGDHAGILVLSKGLQRYRYGFEYGALEVKNHLEI 1057

Query: 969  VMFSDLIVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRR 790
             +FS+++ TV+I Y+   +Q   ISPW+ HFH+SK+ L +KRL +Q + ++L + Y   R
Sbjct: 1058 TLFSEMVNTVMILYE-CPLQRRKISPWSTHFHISKETLKKKRLQVQRVIDKLMENYSLMR 1116

Query: 789  EKIDMMLPRLCFLSKNCSSVKQKD--DDTFCITIAAETSELQVQLETVRDRVIPLLLATH 616
            EK   +LP LC   KNC  + + D  D T CI +AAE  +   QL+T++D VI +LL T 
Sbjct: 1117 EKSAGVLPALCITKKNCPLLDEHDELDQTVCIAVAAEVLDSVTQLDTIKDVVILILLNTL 1176

Query: 615  IKGFWASEKVEVLCESLPASGAELFLKVTMSKNL-RGSFWNALQNACIPMMDLIDWKRSH 439
            +KGF   + VE+ C+       EL LKVTMS++  RG FW+ LQ+ACIP+MDLIDW  SH
Sbjct: 1177 VKGFLGIKHVEIQCQP---DSTELSLKVTMSESCSRGRFWSTLQDACIPIMDLIDWNSSH 1233

Query: 438  PNNTYNVCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKG 259
            P + Y+  + YGIDAAWKYF+KSLKS T+ IGR I +  L+  ADC S TGEFHGLSTKG
Sbjct: 1234 PESIYDTFTVYGIDAAWKYFLKSLKSATSGIGRHIHQEQLVTVADCFSVTGEFHGLSTKG 1293

Query: 258  LRQQRDDMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQ 79
            L+QQR+ +SISSPF+ AC S P N FINAAK GSVD L G LDAV+WGKE PVGTGGPF+
Sbjct: 1294 LKQQRNRLSISSPFSHACFSSPGNNFINAAKKGSVDELCGILDAVSWGKEPPVGTGGPFE 1353

Query: 78   IIYAGKVPKLNRSESMYKHLLNLKAQ 1
            II++ KVP+L +SES+YK L NLK +
Sbjct: 1354 IIFSQKVPQLQKSESIYKVLHNLKVE 1379


>ref|XP_015692233.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
            subunit 1-like [Oryza brachyantha]
          Length = 1472

 Score =  996 bits (2575), Expect = 0.0
 Identities = 528/1046 (50%), Positives = 703/1046 (67%), Gaps = 14/1046 (1%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKL--RXXXXXXXXXXXXXGLRWLKDVVLSKRSD 2923
            ++R H QFG  A+S    RV++C   SKL  +             G +WLKD++LSKRSD
Sbjct: 289  DYRQHPQFGVFASSVVTSRVMECMKSSKLYAKKSDGESSTSTDTYGTKWLKDIILSKRSD 348

Query: 2922 NAFRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDK 2743
            NAFR  MVGDPKI L+E+GIP D+A  L V+E+++ YN E +N+ CN+ LL        K
Sbjct: 349  NAFRSIMVGDPKISLNEIGIPMDLALNLVVSEQVSYYNFETINLKCNLHLLT-------K 401

Query: 2742 AKIFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIE 2563
              + +R   +L  ++K N+L++GD+ YR L++GD +LVNRPPSVHQHSL+ LS ++LP+ 
Sbjct: 402  EVLLVRRNGKLIFVRKANKLQIGDIAYRLLQDGDLVLVNRPPSVHQHSLVALSAKLLPVH 461

Query: 2562 SVVSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTH 2383
            S VSINPLCC P  GDFDGDCLHGY+PQS+  RVEL+ELV L  QL NAQDGRSLVSLTH
Sbjct: 462  SAVSINPLCCDPFKGDFDGDCLHGYVPQSIQSRVELEELVGLNRQLLNAQDGRSLVSLTH 521

Query: 2382 DSLTAAYLLTATKEFLTKFEMQQXXXXXXXXXXXXXXXXXP--NFQTPLWTGEQLFGLLL 2209
            DSL AA+ LT+    L K E QQ                    N Q PLWTG+QLFGLLL
Sbjct: 522  DSLAAAHQLTSADILLQKAEFQQLQMLCSSISSTPMPSVIKSANSQGPLWTGKQLFGLLL 581

Query: 2208 PPTFDFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLL 2029
            P   + +   +N+ IK  EV+     S   +   SSLFS +FK  G KAL ++  +QD+L
Sbjct: 582  PSGMN-ISFDQNLHIKDSEVLTCSSGSLWLQNNTSSLFSVMFKEYGRKALQFLSSTQDVL 640

Query: 2028 CEYLSLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNP-EIQNLPY 1852
            CE+L++RG +VSLSD+YL SD YSRRK+ +E++  L+EAE+  Q+KQ+LLNP  I NL Y
Sbjct: 641  CEFLTIRGLSVSLSDLYLFSDHYSRRKLSEEVHLALDEAEEAFQIKQILLNPVSIPNLKY 700

Query: 1851 HYQDEDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGS 1672
            +   +D+S    Q         + + SI +FK +F DLL +V+  V+KDNSM+AMI++GS
Sbjct: 701  YDGADDLSNSYGQSDFTQASPSIIKSSITSFKSIFNDLLKMVQHHVSKDNSMMAMINSGS 760

Query: 1671 KGSLPKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFD-AAGSYCSQSFF 1495
            KGS+PK +QQ AC+GLQL A   PF++P  L+C  WN  K+ D  + D    S   QS +
Sbjct: 761  KGSIPKFVQQTACVGLQLPASKFPFKIPSILSCVSWNRHKSLDYEITDYTIESMGGQSMY 820

Query: 1494 AVVNTSFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNR 1315
            AV+  SFLDGLNPLE L+HAI GR+N FSENA+VPGTLTRKLMY +RD Y+AYDGTVR+ 
Sbjct: 821  AVIRNSFLDGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYHLRDTYIAYDGTVRSS 880

Query: 1314 NGQQLVEFSYSMLEDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLP 1135
             GQQ+V+FSY    D++D   I         D  G  G PVGS AACSISE AY ALD P
Sbjct: 881  YGQQIVQFSY----DTSDGMYI-------EHDIEGEPGTPVGSWAACSISEAAYGALDHP 929

Query: 1134 INTLEDSPLLKLKNVLECSKSSAST--VAFLFLSKRLEGWRYGFEYGALEVKNHLERVMF 961
            +N LEDSPL+ L+ VL+C K + S      LFLSK L  +RYGFEY +LEVK+HLERV F
Sbjct: 930  VNGLEDSPLMNLQEVLKCHKGTNSVDHTGLLFLSKHLRKYRYGFEYASLEVKDHLERVDF 989

Query: 960  SDLIVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKI 781
            SDL+ TV+I Y G D+Q +  +PW  HFHL+++ +  KRL L ++  EL   Y+  R+++
Sbjct: 990  SDLVDTVMILYGGSDIQKSKGNPWVTHFHLNQEAMKIKRLGLGYVVRELIDQYNALRKQL 1049

Query: 780  DMMLPRLCFLSKNCS----SVKQKDDDTFCITIAAET-SELQVQLETVRDRVIPLLLATH 616
            +  +P +C LS  CS     VK +     C+T+  +  S    QL  +++RVIP +LAT 
Sbjct: 1050 NNTIPSVCILSSKCSVGNGCVKNQ---ACCVTMVVQVESNSTSQLTIIKERVIPSILATL 1106

Query: 615  IKGFWASEKVEVLCESLPASGAELFLKVTMSKNLR-GSFWNALQNACIPMMDLIDWKRSH 439
            +KGF   + V+V C+      +EL ++V MS++ + G FW  LQNACIP+M+LIDW+RS 
Sbjct: 1107 LKGFLEFKNVKVQCQQ----DSELVVRVDMSEHCKSGKFWATLQNACIPIMELIDWERSR 1162

Query: 438  PNNTYNVCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKG 259
            P   Y+V  +YGID+AWK+FV+SL+S T  IGR+I ++HL++ ADCLS +G+FHGLS++G
Sbjct: 1163 PERLYDVFCSYGIDSAWKFFVESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLSSQG 1222

Query: 258  LRQQRDDMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQ 79
            L+QQR  +SISSPF++AC S PA+ FINAAK  SVD+LSGTLDA+AWGKE   GT GPF+
Sbjct: 1223 LKQQRTSLSISSPFSEACFSRPAHSFINAAKKDSVDKLSGTLDAIAWGKEPCTGTSGPFK 1282

Query: 78   IIYAGKVPKLNRSESMYKHLLNLKAQ 1
            I+Y+GK  +  + E++Y  L N + Q
Sbjct: 1283 ILYSGKSHETKQKENIYNFLHNPEIQ 1308


>ref|XP_015696685.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
            brachyantha]
          Length = 1476

 Score =  988 bits (2554), Expect = 0.0
 Identities = 527/1043 (50%), Positives = 699/1043 (67%), Gaps = 11/1043 (1%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKL--RXXXXXXXXXXXXXGLRWLKDVVLSKRSD 2923
            ++R H QFG  A+S    RV++C   SKL  R             G +WLKD++LSKRSD
Sbjct: 293  DYRQHPQFGVYASSAVTSRVMECLKSSKLYSRKSDGESSTSTDTYGTKWLKDIILSKRSD 352

Query: 2922 NAFRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDK 2743
            NAFR  MVGDPKI L+E+G+P D+A  L V+E+++SYN E +N+ CN+ LL        K
Sbjct: 353  NAFRSVMVGDPKINLNEIGMPMDLALNLVVSEQVSSYNFETINLKCNLHLLT-------K 405

Query: 2742 AKIFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIE 2563
              + +R    L  ++K N+L++GD+ YRPL++GD ILVNRPPSVHQHSLI LS +IL   
Sbjct: 406  EVLLVRRNGRLIFIRKANKLEIGDIAYRPLQDGDLILVNRPPSVHQHSLIALSAKILSSH 465

Query: 2562 SVVSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTH 2383
            S VSINPLCC P  GDFDGDCLHGY+PQS+  RVEL ELV L  QL NAQDGRSLVSLTH
Sbjct: 466  SAVSINPLCCGPFQGDFDGDCLHGYVPQSLQSRVELDELVGLSGQLLNAQDGRSLVSLTH 525

Query: 2382 DSLTAAYLLTATKEFLTKFEMQQXXXXXXXXXXXXXXXXXPNF--QTPLWTGEQLFGLLL 2209
            DSLTAA+ LT++  FL K E QQ                  +   Q PLWTG+QLFG+L+
Sbjct: 526  DSLTAAHQLTSSDVFLQKAEFQQLQMLCSSVSSTPMPSILKSSKSQGPLWTGKQLFGMLI 585

Query: 2208 PPTFDFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLL 2029
            P   + ++  + + IK  EV+A+   SF  +   SSLFS +F+  G KAL ++  SQD+L
Sbjct: 586  PSGMN-INFDEKLHIKDSEVLAFSSGSFWLQNNTSSLFSVMFEEYGCKALEFLSSSQDVL 644

Query: 2028 CEYLSLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNP-EIQNLPY 1852
            CE+L++RG +VSLSD YL SD YSRRK+I+E++  L+EAE+  Q+KQ+LLNP  I  L Y
Sbjct: 645  CEFLTMRGLSVSLSDFYLLSDHYSRRKLIEEVHLALDEAEEAFQIKQILLNPVSIPYLKY 704

Query: 1851 HYQDEDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGS 1672
            +   +D+     Q         + Q SI +FK VF DLL +V Q  +KDNSM+AMI++GS
Sbjct: 705  YDGADDLLNSYEQSDYTQVSLPIIQSSITSFKSVFNDLLKMVHQHASKDNSMMAMINSGS 764

Query: 1671 KGSLPKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGSYCS-QSFF 1495
            KGS+ K +QQ AC+GLQL A   PF +P +L+C  WN  K+ +  + D        Q+ +
Sbjct: 765  KGSVLKFVQQTACVGLQLPASIFPFRIPSELSCVSWNRHKSLNCEMTDGTSERMGGQNIY 824

Query: 1494 AVVNTSFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNR 1315
            AV+  SFLDGLNPLE L+HAI GR+N FSENA+VPGTLTRKLMY +RD YVAYDGTVR+ 
Sbjct: 825  AVIRNSFLDGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSS 884

Query: 1314 NGQQLVEFSYSMLEDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLP 1135
             GQQ+V+FSY+  +              ++ D  G  G PVGS AACSISE AY ALD P
Sbjct: 885  YGQQIVQFSYNTADGMF-----------RDHDLEGEPGAPVGSWAACSISEAAYGALDHP 933

Query: 1134 INTLEDSPLLKLKNVLECSKSSAST--VAFLFLSKRLEGWRYGFEYGALEVKNHLERVMF 961
            +N LEDSPL+ L+ VL+C KS+ S      LFLSK L  +RYGFEY +L+VK+HLERV F
Sbjct: 934  VNALEDSPLMNLQEVLKCRKSTKSVDHTGLLFLSKHLRKYRYGFEYASLQVKDHLERVDF 993

Query: 960  SDLIVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKI 781
            SDL+  V+I Y G D+Q T  +PW  HFHLS++ +  KRL L FI  EL + Y+  R++ 
Sbjct: 994  SDLVDAVMILYGGSDMQKTQGNPWITHFHLSQETMKIKRLRLGFIVRELIEQYNALRKQS 1053

Query: 780  DMMLPRLCFLSKNCSSVKQ-KDDDTFCITIAAET-SELQVQLETVRDRVIPLLLATHIKG 607
            +  +P +C  + NCS   +   + T CIT+ A+  S    QL  +++RVIP +L T +KG
Sbjct: 1054 NNTIPSVCISNSNCSVGNECVKNCTCCITMVAQVESNSTSQLNIIKERVIPSILETLLKG 1113

Query: 606  FWASEKVEVLCESLPASGAELFLKVTMSKNLR-GSFWNALQNACIPMMDLIDWKRSHPNN 430
            F   + V+V  +      +EL +KV MS++ + G FW ALQNACIP+M+LIDW+RS P  
Sbjct: 1114 FLEFKNVKVEYQQ----DSELVVKVGMSEHCKSGKFWAALQNACIPIMELIDWERSQPER 1169

Query: 429  TYNVCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQ 250
              ++  +YGID+AWK+FV+SL+S T  IGR+I ++HL++ ADCLS +G+FHGL+++GL+ 
Sbjct: 1170 VNDIFCSYGIDSAWKFFVESLRSTTDAIGRNIRRQHLLVVADCLSVSGQFHGLTSQGLKH 1229

Query: 249  QRDDMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIY 70
            QR  +SISSPF++AC S PA+ FINAAK  SVD LSGTLDA+AWGKE  VGT GPF+I+Y
Sbjct: 1230 QRTSLSISSPFSEACFSRPAHSFINAAKQDSVDNLSGTLDAIAWGKEPCVGTSGPFKILY 1289

Query: 69   AGKVPKLNRSESMYKHLLNLKAQ 1
            +GK  +  ++E++Y  L N   Q
Sbjct: 1290 SGKSLETKQNENIYDFLHNPDVQ 1312


>gb|PAN38258.1| hypothetical protein PAHAL_G00276 [Panicum hallii]
          Length = 1451

 Score =  985 bits (2546), Expect = 0.0
 Identities = 537/1041 (51%), Positives = 692/1041 (66%), Gaps = 9/1041 (0%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKLRXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            ++R H QF  LA+S    RV +C   SKL              G++WLKD VLSKRSDNA
Sbjct: 280  DYRQHPQFSVLASSLVSSRVSECLKSSKLYSRKTDGETTTDTYGMKWLKDAVLSKRSDNA 339

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FR  MVGDPKI L E+GIP  +A  L V+E ++SYNLE +N  CN+ LLA       K +
Sbjct: 340  FRSIMVGDPKIRLWEIGIPEGLASNLVVSEHVSSYNLENMNFKCNLHLLA-------KEE 392

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            +FIR   +L  ++K NQL+VGD+ YRPL++GD ILVNRPPSVHQHSLI LS +ILPI+SV
Sbjct: 393  LFIRRSGKLMFIRKANQLEVGDIAYRPLQDGDLILVNRPPSVHQHSLIALSTKILPIQSV 452

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            VSINPLCC P LGDFDGDCLHGYIPQS+  R+EL ELVSL  QL N QDGRSLVSLTHDS
Sbjct: 453  VSINPLCCTPFLGDFDGDCLHGYIPQSIRSRIELGELVSLHQQLLNMQDGRSLVSLTHDS 512

Query: 2376 LTAAYLLTATKEFLTKFEMQ--QXXXXXXXXXXXXXXXXXPNFQTPLWTGEQLFGLLLPP 2203
            L AAYLLT+T  FL K E+Q  Q                  +FQ  LWTG+Q F +LLP 
Sbjct: 513  LAAAYLLTSTDVFLKKSELQQLQMLCLSVSKTPVPAVVKSMDFQGSLWTGKQFFSMLLPS 572

Query: 2202 TFDFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCE 2023
              +F    + + I   EV+     S   + + S LFS +FK  G KAL ++  +Q++LCE
Sbjct: 573  GMNF-SCDRKLQIIDSEVLTCSLGSSWLQNSTSGLFSIMFKQYGHKALEFLSSAQEVLCE 631

Query: 2022 YLSLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNP-EIQNLPYHY 1846
            +L++RG +VSLSD+Y+ SD YSRRK+ + +   L+EAE+  ++KQ+LL+P  I  L  H 
Sbjct: 632  FLTMRGLSVSLSDLYMFSDHYSRRKLTEGVKLALDEAEEAFRIKQILLDPINIPILKCHD 691

Query: 1845 QDEDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKG 1666
            + ED+     Q         V + SI AFKDVF DLL +V+Q V+ DNSM+ MI+AGSKG
Sbjct: 692  ETEDV--IYRQSDNIQSNLSVVRSSIMAFKDVFSDLLKMVQQHVSNDNSMVVMINAGSKG 749

Query: 1665 SLPKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGSYCSQSFFAVV 1486
            S+ K  QQ AC+GLQL A   PF +P KL+C  WN QK+ +       G    Q+ +AV+
Sbjct: 750  SMLKYAQQTACVGLQLPASKFPFRIPSKLSCISWNRQKSLNCEAEGTNGHVGGQNLYAVI 809

Query: 1485 NTSFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNGQ 1306
              SF++GLNPLE L+HAI GR+N FSE+A+VPGTLTRKLMY +RD++VAYDGTVR+  GQ
Sbjct: 810  RNSFIEGLNPLECLLHAISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQ 869

Query: 1305 QLVEFSYSMLEDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPINT 1126
             +++FSY   +D              N D     G PVGS AACSISE AY ALD P+N 
Sbjct: 870  HILQFSYDTADDMY-----------CNRDRVDEIGAPVGSWAACSISEAAYGALDHPVNG 918

Query: 1125 LEDSPLLKLKNVLECSKSSAS--TVAFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSDL 952
            LEDSPL+ L+ V +C K+S S   V FLFLSK L+  R+G EY +LEVKNHLERV FSDL
Sbjct: 919  LEDSPLMNLQEVFKCHKASNSGDHVGFLFLSKNLKKHRFGLEYASLEVKNHLERVNFSDL 978

Query: 951  IVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDMM 772
            + TV+I YDG D       PWT HFH+SK+M+ +KRL L F+  EL K YD  R +++  
Sbjct: 979  VETVMIIYDGCDTTRKG-GPWTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNE 1037

Query: 771  LPRLCFLSKNCSSVKQK--DDDTFCITIAAET-SELQVQLETVRDRVIPLLLATHIKGFW 601
            +P +  +SK   SV  +   + T CIT+ A+  S    QL+T++ RVIP++L T +KGF 
Sbjct: 1038 IPSV-RISKIKRSVGDECVQNSTCCITVVAQAESNSMSQLDTIKKRVIPIILDTLLKGFL 1096

Query: 600  ASEKVEVLCESLPASGAELFLKVTMSKNLR-GSFWNALQNACIPMMDLIDWKRSHPNNTY 424
              + VE+ C        EL +KV MS++ + G FW  LQNACIP+M+LIDW++S P N Y
Sbjct: 1097 EFKDVEIQCR----HDGELLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVY 1152

Query: 423  NVCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQR 244
            ++  +YGID+AWK FV+SLKSVTADIGR++ + HL++ AD LS TG+FH LS++GL+QQR
Sbjct: 1153 DIFCSYGIDSAWKCFVESLKSVTADIGRNVRREHLLVVADSLSVTGQFHSLSSQGLKQQR 1212

Query: 243  DDMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAG 64
              +SISSPF++AC S PA  FINAAK  SVD L G+LDA+AWGKE   GT GPF+I++ G
Sbjct: 1213 TRLSISSPFSEACFSRPAQSFINAAKQCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHVG 1272

Query: 63   KVPKLNRSESMYKHLLNLKAQ 1
            K  K   +ES+Y  L N + Q
Sbjct: 1273 KPHKPEENESIYGFLCNPEVQ 1293


>ref|XP_015611695.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X4 [Oryza
            sativa Japonica Group]
          Length = 1465

 Score =  978 bits (2527), Expect = 0.0
 Identities = 523/1041 (50%), Positives = 698/1041 (67%), Gaps = 11/1041 (1%)
 Frame = -2

Query: 3090 RHHQQFGPLATSYTMGRVLDCWNVSKL--RXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            R H QF   A+S    RV++C   SKL  R             G +WLKD++LSKRSDNA
Sbjct: 284  RQHPQFSVFASSVVTSRVMECLKSSKLYSRKSDGEDPTSPDTYGTKWLKDIILSKRSDNA 343

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FR  MVGDPKI L+E+GIP D+A  L V+E+++ YN E +N+ CN+ LL        K  
Sbjct: 344  FRSIMVGDPKINLNEIGIPTDLALNLVVSEQVSFYNFETINLKCNLHLLT-------KEV 396

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            + +R   +L  ++K N+L++GD+ YR L++GD +LVNRPPSVHQHSLI LS ++LPI+S 
Sbjct: 397  LLVRRNGKLIFVRKANKLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAKLLPIQSA 456

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            V+INPLCC P  GDFDGDCLHGY+PQ++  RVEL  LVSL  Q+ NAQDGRSLVSLTHDS
Sbjct: 457  VAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVELDGLVSLSGQMLNAQDGRSLVSLTHDS 516

Query: 2376 LTAAYLLTATKEFLTKFEMQQXXXXXXXXXXXXXXXXXP--NFQTPLWTGEQLFGLLLPP 2203
            L AA+ LT+   FL K E QQ                    NFQ  LWTG+QLFG+LLP 
Sbjct: 517  LAAAHQLTSADVFLQKAEFQQLQLLCSSISPTPEPSVVKSANFQGSLWTGKQLFGMLLPS 576

Query: 2202 TFDFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCE 2023
              + +   + + IK  EV+     SF  +   SS+FS +FK  GSKAL ++  +QD+LCE
Sbjct: 577  GMN-ISFDQKLHIKDSEVLTCSSGSFWLQNNTSSVFSVMFKEYGSKALEFLSSTQDVLCE 635

Query: 2022 YLSLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNP-EIQNLPYHY 1846
            +L+++G +VSLSD YL SD YSR+K+ +EI+  L+EAE+  Q+KQ+LLN   I NL ++ 
Sbjct: 636  FLTMKGLSVSLSDFYLFSDHYSRKKLSEEIHLALDEAEEAFQIKQILLNTVSIPNLKHYD 695

Query: 1845 QDEDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKG 1666
              +++S    Q         + + SI  FK VF DLL +V Q V+KDNSM+AMI++GSKG
Sbjct: 696  GPDNLSNSHGQSDFTQVSLPIIKSSITGFKSVFNDLLKMVLQHVSKDNSMMAMINSGSKG 755

Query: 1665 SLPKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGS-YCSQSFFAV 1489
            S+ K +QQ AC+GLQL A   PF +P +L+C  WN QK+ +  + +        Q+ +AV
Sbjct: 756  SVLKFVQQTACVGLQLPASTFPFRIPSELSCVSWNRQKSLNCEITNNTSECMAGQNMYAV 815

Query: 1488 VNTSFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNG 1309
            +  SFLDGLNPLE L+HAI GR+N FSENA+VPGTLTRKLMY +RD YVAYDGTVR+  G
Sbjct: 816  IRNSFLDGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYG 875

Query: 1308 QQLVEFSYSMLEDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPIN 1129
            +Q+V+FSY          +  D  N+ + D  G  G PVGS AACSISE AY ALD P+N
Sbjct: 876  RQIVQFSY----------DTADGMNNDH-DLEGEPGAPVGSWAACSISEAAYGALDHPVN 924

Query: 1128 TLEDSPLLKLKNVLECSKSSASTV--AFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSD 955
             LEDSPL+ L+ VL+C K + S V    LFLSK L+ +RYGFEY +LEVK+HLERV FSD
Sbjct: 925  ALEDSPLMNLQEVLKCHKGTKSAVHTGLLFLSKYLKKYRYGFEYASLEVKDHLERVDFSD 984

Query: 954  LIVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDM 775
            L+ TV+I Y   D+Q T  +PW  HFHLS++ +  KRL L FI  EL   Y+  R+K++ 
Sbjct: 985  LVDTVMILYGSSDMQRTQGNPWITHFHLSEETMKIKRLRLGFIVRELIDQYNALRKKLNN 1044

Query: 774  MLPRLCFLSKNCSSVKQ-KDDDTFCITIAAET-SELQVQLETVRDRVIPLLLATHIKGFW 601
            M+P +C     CS   +   + + C+T+ A+  S    QL+ +++RVIP +LAT +KGF 
Sbjct: 1045 MIPSVCISYSKCSVGNECVKNRSCCVTMVAQVESNSTSQLDIIKERVIPSILATLLKGFL 1104

Query: 600  ASEKVEVLCESLPASGAELFLKVTMSKNLR-GSFWNALQNACIPMMDLIDWKRSHPNNTY 424
              E V+V C+      +EL +KV MS++ + G FW  LQNACIP+M+LIDW+RS P   Y
Sbjct: 1105 EFENVKVECQQ----DSELVVKVGMSEHCKTGKFWATLQNACIPIMELIDWERSRPERVY 1160

Query: 423  NVCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQR 244
            ++  +YGID+AWKYFV+SL+S T  IGR+I ++HL++ ADCLS +G+FHGLS++GL+QQR
Sbjct: 1161 DIFCSYGIDSAWKYFVESLRSTTDAIGRNIHRQHLLVVADCLSISGQFHGLSSQGLKQQR 1220

Query: 243  DDMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAG 64
              +SISSPF++AC S PA  FINAAK  SVD LSG LDA+AWGKE   GT GPF+++Y+G
Sbjct: 1221 AWLSISSPFSEACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVLYSG 1280

Query: 63   KVPKLNRSESMYKHLLNLKAQ 1
            K  K  +++++Y  L N + Q
Sbjct: 1281 KSQKTKQNKNIYDFLHNPEVQ 1301


>ref|XP_015611694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3 [Oryza
            sativa Japonica Group]
          Length = 1466

 Score =  978 bits (2527), Expect = 0.0
 Identities = 523/1041 (50%), Positives = 698/1041 (67%), Gaps = 11/1041 (1%)
 Frame = -2

Query: 3090 RHHQQFGPLATSYTMGRVLDCWNVSKL--RXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            R H QF   A+S    RV++C   SKL  R             G +WLKD++LSKRSDNA
Sbjct: 285  RQHPQFSVFASSVVTSRVMECLKSSKLYSRKSDGEDPTSPDTYGTKWLKDIILSKRSDNA 344

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FR  MVGDPKI L+E+GIP D+A  L V+E+++ YN E +N+ CN+ LL        K  
Sbjct: 345  FRSIMVGDPKINLNEIGIPTDLALNLVVSEQVSFYNFETINLKCNLHLLT-------KEV 397

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            + +R   +L  ++K N+L++GD+ YR L++GD +LVNRPPSVHQHSLI LS ++LPI+S 
Sbjct: 398  LLVRRNGKLIFVRKANKLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAKLLPIQSA 457

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            V+INPLCC P  GDFDGDCLHGY+PQ++  RVEL  LVSL  Q+ NAQDGRSLVSLTHDS
Sbjct: 458  VAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVELDGLVSLSGQMLNAQDGRSLVSLTHDS 517

Query: 2376 LTAAYLLTATKEFLTKFEMQQXXXXXXXXXXXXXXXXXP--NFQTPLWTGEQLFGLLLPP 2203
            L AA+ LT+   FL K E QQ                    NFQ  LWTG+QLFG+LLP 
Sbjct: 518  LAAAHQLTSADVFLQKAEFQQLQLLCSSISPTPEPSVVKSANFQGSLWTGKQLFGMLLPS 577

Query: 2202 TFDFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCE 2023
              + +   + + IK  EV+     SF  +   SS+FS +FK  GSKAL ++  +QD+LCE
Sbjct: 578  GMN-ISFDQKLHIKDSEVLTCSSGSFWLQNNTSSVFSVMFKEYGSKALEFLSSTQDVLCE 636

Query: 2022 YLSLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNP-EIQNLPYHY 1846
            +L+++G +VSLSD YL SD YSR+K+ +EI+  L+EAE+  Q+KQ+LLN   I NL ++ 
Sbjct: 637  FLTMKGLSVSLSDFYLFSDHYSRKKLSEEIHLALDEAEEAFQIKQILLNTVSIPNLKHYD 696

Query: 1845 QDEDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKG 1666
              +++S    Q         + + SI  FK VF DLL +V Q V+KDNSM+AMI++GSKG
Sbjct: 697  GPDNLSNSHGQSDFTQVSLPIIKSSITGFKSVFNDLLKMVLQHVSKDNSMMAMINSGSKG 756

Query: 1665 SLPKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGS-YCSQSFFAV 1489
            S+ K +QQ AC+GLQL A   PF +P +L+C  WN QK+ +  + +        Q+ +AV
Sbjct: 757  SVLKFVQQTACVGLQLPASTFPFRIPSELSCVSWNRQKSLNCEITNNTSECMAGQNMYAV 816

Query: 1488 VNTSFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNG 1309
            +  SFLDGLNPLE L+HAI GR+N FSENA+VPGTLTRKLMY +RD YVAYDGTVR+  G
Sbjct: 817  IRNSFLDGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYG 876

Query: 1308 QQLVEFSYSMLEDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPIN 1129
            +Q+V+FSY          +  D  N+ + D  G  G PVGS AACSISE AY ALD P+N
Sbjct: 877  RQIVQFSY----------DTADGMNNDH-DLEGEPGAPVGSWAACSISEAAYGALDHPVN 925

Query: 1128 TLEDSPLLKLKNVLECSKSSASTV--AFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSD 955
             LEDSPL+ L+ VL+C K + S V    LFLSK L+ +RYGFEY +LEVK+HLERV FSD
Sbjct: 926  ALEDSPLMNLQEVLKCHKGTKSAVHTGLLFLSKYLKKYRYGFEYASLEVKDHLERVDFSD 985

Query: 954  LIVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDM 775
            L+ TV+I Y   D+Q T  +PW  HFHLS++ +  KRL L FI  EL   Y+  R+K++ 
Sbjct: 986  LVDTVMILYGSSDMQRTQGNPWITHFHLSEETMKIKRLRLGFIVRELIDQYNALRKKLNN 1045

Query: 774  MLPRLCFLSKNCSSVKQ-KDDDTFCITIAAET-SELQVQLETVRDRVIPLLLATHIKGFW 601
            M+P +C     CS   +   + + C+T+ A+  S    QL+ +++RVIP +LAT +KGF 
Sbjct: 1046 MIPSVCISYSKCSVGNECVKNRSCCVTMVAQVESNSTSQLDIIKERVIPSILATLLKGFL 1105

Query: 600  ASEKVEVLCESLPASGAELFLKVTMSKNLR-GSFWNALQNACIPMMDLIDWKRSHPNNTY 424
              E V+V C+      +EL +KV MS++ + G FW  LQNACIP+M+LIDW+RS P   Y
Sbjct: 1106 EFENVKVECQQ----DSELVVKVGMSEHCKTGKFWATLQNACIPIMELIDWERSRPERVY 1161

Query: 423  NVCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQR 244
            ++  +YGID+AWKYFV+SL+S T  IGR+I ++HL++ ADCLS +G+FHGLS++GL+QQR
Sbjct: 1162 DIFCSYGIDSAWKYFVESLRSTTDAIGRNIHRQHLLVVADCLSISGQFHGLSSQGLKQQR 1221

Query: 243  DDMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAG 64
              +SISSPF++AC S PA  FINAAK  SVD LSG LDA+AWGKE   GT GPF+++Y+G
Sbjct: 1222 AWLSISSPFSEACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVLYSG 1281

Query: 63   KVPKLNRSESMYKHLLNLKAQ 1
            K  K  +++++Y  L N + Q
Sbjct: 1282 KSQKTKQNKNIYDFLHNPEVQ 1302


>ref|XP_015611693.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Oryza
            sativa Japonica Group]
          Length = 1466

 Score =  978 bits (2527), Expect = 0.0
 Identities = 523/1041 (50%), Positives = 698/1041 (67%), Gaps = 11/1041 (1%)
 Frame = -2

Query: 3090 RHHQQFGPLATSYTMGRVLDCWNVSKL--RXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            R H QF   A+S    RV++C   SKL  R             G +WLKD++LSKRSDNA
Sbjct: 285  RQHPQFSVFASSVVTSRVMECLKSSKLYSRKSDGEDPTSPDTYGTKWLKDIILSKRSDNA 344

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FR  MVGDPKI L+E+GIP D+A  L V+E+++ YN E +N+ CN+ LL        K  
Sbjct: 345  FRSIMVGDPKINLNEIGIPTDLALNLVVSEQVSFYNFETINLKCNLHLLT-------KEV 397

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            + +R   +L  ++K N+L++GD+ YR L++GD +LVNRPPSVHQHSLI LS ++LPI+S 
Sbjct: 398  LLVRRNGKLIFVRKANKLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAKLLPIQSA 457

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            V+INPLCC P  GDFDGDCLHGY+PQ++  RVEL  LVSL  Q+ NAQDGRSLVSLTHDS
Sbjct: 458  VAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVELDGLVSLSGQMLNAQDGRSLVSLTHDS 517

Query: 2376 LTAAYLLTATKEFLTKFEMQQXXXXXXXXXXXXXXXXXP--NFQTPLWTGEQLFGLLLPP 2203
            L AA+ LT+   FL K E QQ                    NFQ  LWTG+QLFG+LLP 
Sbjct: 518  LAAAHQLTSADVFLQKAEFQQLQLLCSSISPTPEPSVVKSANFQGSLWTGKQLFGMLLPS 577

Query: 2202 TFDFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCE 2023
              + +   + + IK  EV+     SF  +   SS+FS +FK  GSKAL ++  +QD+LCE
Sbjct: 578  GMN-ISFDQKLHIKDSEVLTCSSGSFWLQNNTSSVFSVMFKEYGSKALEFLSSTQDVLCE 636

Query: 2022 YLSLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNP-EIQNLPYHY 1846
            +L+++G +VSLSD YL SD YSR+K+ +EI+  L+EAE+  Q+KQ+LLN   I NL ++ 
Sbjct: 637  FLTMKGLSVSLSDFYLFSDHYSRKKLSEEIHLALDEAEEAFQIKQILLNTVSIPNLKHYD 696

Query: 1845 QDEDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKG 1666
              +++S    Q         + + SI  FK VF DLL +V Q V+KDNSM+AMI++GSKG
Sbjct: 697  GPDNLSNSHGQSDFTQVSLPIIKSSITGFKSVFNDLLKMVLQHVSKDNSMMAMINSGSKG 756

Query: 1665 SLPKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGS-YCSQSFFAV 1489
            S+ K +QQ AC+GLQL A   PF +P +L+C  WN QK+ +  + +        Q+ +AV
Sbjct: 757  SVLKFVQQTACVGLQLPASTFPFRIPSELSCVSWNRQKSLNCEITNNTSECMAGQNMYAV 816

Query: 1488 VNTSFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNG 1309
            +  SFLDGLNPLE L+HAI GR+N FSENA+VPGTLTRKLMY +RD YVAYDGTVR+  G
Sbjct: 817  IRNSFLDGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYG 876

Query: 1308 QQLVEFSYSMLEDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPIN 1129
            +Q+V+FSY          +  D  N+ + D  G  G PVGS AACSISE AY ALD P+N
Sbjct: 877  RQIVQFSY----------DTADGMNNDH-DLEGEPGAPVGSWAACSISEAAYGALDHPVN 925

Query: 1128 TLEDSPLLKLKNVLECSKSSASTV--AFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSD 955
             LEDSPL+ L+ VL+C K + S V    LFLSK L+ +RYGFEY +LEVK+HLERV FSD
Sbjct: 926  ALEDSPLMNLQEVLKCHKGTKSAVHTGLLFLSKYLKKYRYGFEYASLEVKDHLERVDFSD 985

Query: 954  LIVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDM 775
            L+ TV+I Y   D+Q T  +PW  HFHLS++ +  KRL L FI  EL   Y+  R+K++ 
Sbjct: 986  LVDTVMILYGSSDMQRTQGNPWITHFHLSEETMKIKRLRLGFIVRELIDQYNALRKKLNN 1045

Query: 774  MLPRLCFLSKNCSSVKQ-KDDDTFCITIAAET-SELQVQLETVRDRVIPLLLATHIKGFW 601
            M+P +C     CS   +   + + C+T+ A+  S    QL+ +++RVIP +LAT +KGF 
Sbjct: 1046 MIPSVCISYSKCSVGNECVKNRSCCVTMVAQVESNSTSQLDIIKERVIPSILATLLKGFL 1105

Query: 600  ASEKVEVLCESLPASGAELFLKVTMSKNLR-GSFWNALQNACIPMMDLIDWKRSHPNNTY 424
              E V+V C+      +EL +KV MS++ + G FW  LQNACIP+M+LIDW+RS P   Y
Sbjct: 1106 EFENVKVECQQ----DSELVVKVGMSEHCKTGKFWATLQNACIPIMELIDWERSRPERVY 1161

Query: 423  NVCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQR 244
            ++  +YGID+AWKYFV+SL+S T  IGR+I ++HL++ ADCLS +G+FHGLS++GL+QQR
Sbjct: 1162 DIFCSYGIDSAWKYFVESLRSTTDAIGRNIHRQHLLVVADCLSISGQFHGLSSQGLKQQR 1221

Query: 243  DDMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAG 64
              +SISSPF++AC S PA  FINAAK  SVD LSG LDA+AWGKE   GT GPF+++Y+G
Sbjct: 1222 AWLSISSPFSEACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVLYSG 1281

Query: 63   KVPKLNRSESMYKHLLNLKAQ 1
            K  K  +++++Y  L N + Q
Sbjct: 1282 KSQKTKQNKNIYDFLHNPEVQ 1302


>ref|XP_015611692.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Oryza
            sativa Japonica Group]
          Length = 1467

 Score =  978 bits (2527), Expect = 0.0
 Identities = 523/1041 (50%), Positives = 698/1041 (67%), Gaps = 11/1041 (1%)
 Frame = -2

Query: 3090 RHHQQFGPLATSYTMGRVLDCWNVSKL--RXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            R H QF   A+S    RV++C   SKL  R             G +WLKD++LSKRSDNA
Sbjct: 286  RQHPQFSVFASSVVTSRVMECLKSSKLYSRKSDGEDPTSPDTYGTKWLKDIILSKRSDNA 345

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FR  MVGDPKI L+E+GIP D+A  L V+E+++ YN E +N+ CN+ LL        K  
Sbjct: 346  FRSIMVGDPKINLNEIGIPTDLALNLVVSEQVSFYNFETINLKCNLHLLT-------KEV 398

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            + +R   +L  ++K N+L++GD+ YR L++GD +LVNRPPSVHQHSLI LS ++LPI+S 
Sbjct: 399  LLVRRNGKLIFVRKANKLEIGDIAYRLLQDGDLVLVNRPPSVHQHSLIALSAKLLPIQSA 458

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            V+INPLCC P  GDFDGDCLHGY+PQ++  RVEL  LVSL  Q+ NAQDGRSLVSLTHDS
Sbjct: 459  VAINPLCCDPFKGDFDGDCLHGYVPQTLQSRVELDGLVSLSGQMLNAQDGRSLVSLTHDS 518

Query: 2376 LTAAYLLTATKEFLTKFEMQQXXXXXXXXXXXXXXXXXP--NFQTPLWTGEQLFGLLLPP 2203
            L AA+ LT+   FL K E QQ                    NFQ  LWTG+QLFG+LLP 
Sbjct: 519  LAAAHQLTSADVFLQKAEFQQLQLLCSSISPTPEPSVVKSANFQGSLWTGKQLFGMLLPS 578

Query: 2202 TFDFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCE 2023
              + +   + + IK  EV+     SF  +   SS+FS +FK  GSKAL ++  +QD+LCE
Sbjct: 579  GMN-ISFDQKLHIKDSEVLTCSSGSFWLQNNTSSVFSVMFKEYGSKALEFLSSTQDVLCE 637

Query: 2022 YLSLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNP-EIQNLPYHY 1846
            +L+++G +VSLSD YL SD YSR+K+ +EI+  L+EAE+  Q+KQ+LLN   I NL ++ 
Sbjct: 638  FLTMKGLSVSLSDFYLFSDHYSRKKLSEEIHLALDEAEEAFQIKQILLNTVSIPNLKHYD 697

Query: 1845 QDEDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKG 1666
              +++S    Q         + + SI  FK VF DLL +V Q V+KDNSM+AMI++GSKG
Sbjct: 698  GPDNLSNSHGQSDFTQVSLPIIKSSITGFKSVFNDLLKMVLQHVSKDNSMMAMINSGSKG 757

Query: 1665 SLPKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGS-YCSQSFFAV 1489
            S+ K +QQ AC+GLQL A   PF +P +L+C  WN QK+ +  + +        Q+ +AV
Sbjct: 758  SVLKFVQQTACVGLQLPASTFPFRIPSELSCVSWNRQKSLNCEITNNTSECMAGQNMYAV 817

Query: 1488 VNTSFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNG 1309
            +  SFLDGLNPLE L+HAI GR+N FSENA+VPGTLTRKLMY +RD YVAYDGTVR+  G
Sbjct: 818  IRNSFLDGLNPLECLLHAISGRANFFSENADVPGTLTRKLMYHLRDTYVAYDGTVRSSYG 877

Query: 1308 QQLVEFSYSMLEDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPIN 1129
            +Q+V+FSY          +  D  N+ + D  G  G PVGS AACSISE AY ALD P+N
Sbjct: 878  RQIVQFSY----------DTADGMNNDH-DLEGEPGAPVGSWAACSISEAAYGALDHPVN 926

Query: 1128 TLEDSPLLKLKNVLECSKSSASTV--AFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSD 955
             LEDSPL+ L+ VL+C K + S V    LFLSK L+ +RYGFEY +LEVK+HLERV FSD
Sbjct: 927  ALEDSPLMNLQEVLKCHKGTKSAVHTGLLFLSKYLKKYRYGFEYASLEVKDHLERVDFSD 986

Query: 954  LIVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDM 775
            L+ TV+I Y   D+Q T  +PW  HFHLS++ +  KRL L FI  EL   Y+  R+K++ 
Sbjct: 987  LVDTVMILYGSSDMQRTQGNPWITHFHLSEETMKIKRLRLGFIVRELIDQYNALRKKLNN 1046

Query: 774  MLPRLCFLSKNCSSVKQ-KDDDTFCITIAAET-SELQVQLETVRDRVIPLLLATHIKGFW 601
            M+P +C     CS   +   + + C+T+ A+  S    QL+ +++RVIP +LAT +KGF 
Sbjct: 1047 MIPSVCISYSKCSVGNECVKNRSCCVTMVAQVESNSTSQLDIIKERVIPSILATLLKGFL 1106

Query: 600  ASEKVEVLCESLPASGAELFLKVTMSKNLR-GSFWNALQNACIPMMDLIDWKRSHPNNTY 424
              E V+V C+      +EL +KV MS++ + G FW  LQNACIP+M+LIDW+RS P   Y
Sbjct: 1107 EFENVKVECQQ----DSELVVKVGMSEHCKTGKFWATLQNACIPIMELIDWERSRPERVY 1162

Query: 423  NVCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQR 244
            ++  +YGID+AWKYFV+SL+S T  IGR+I ++HL++ ADCLS +G+FHGLS++GL+QQR
Sbjct: 1163 DIFCSYGIDSAWKYFVESLRSTTDAIGRNIHRQHLLVVADCLSISGQFHGLSSQGLKQQR 1222

Query: 243  DDMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAG 64
              +SISSPF++AC S PA  FINAAK  SVD LSG LDA+AWGKE   GT GPF+++Y+G
Sbjct: 1223 AWLSISSPFSEACFSRPAYSFINAAKRDSVDNLSGALDAIAWGKEPCAGTSGPFKVLYSG 1282

Query: 63   KVPKLNRSESMYKHLLNLKAQ 1
            K  K  +++++Y  L N + Q
Sbjct: 1283 KSQKTKQNKNIYDFLHNPEVQ 1303


>ref|XP_022682777.1| DNA-directed RNA polymerase IV subunit 1 isoform X4 [Setaria italica]
          Length = 1361

 Score =  974 bits (2519), Expect = 0.0
 Identities = 524/1034 (50%), Positives = 692/1034 (66%), Gaps = 8/1034 (0%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKLRXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            ++R H QF  LA+S    RV +C   SKL              G++WLKD VLSKRSDNA
Sbjct: 190  DYRQHPQFSVLASSLVSSRVSECLKSSKLYSKKTDVETSTDTYGMKWLKDAVLSKRSDNA 249

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FR  MVGDPKI L E+GIP ++A  L V+E ++SYNLE +N+ CN+ LLA       K +
Sbjct: 250  FRSIMVGDPKIRLWEIGIPENLASNLVVSEHVSSYNLENINLKCNLHLLA-------KEE 302

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            + IR   +L  ++K NQL+VGD+ YRPL++GD IL+NRPPSVHQHSLI LS +ILPI+SV
Sbjct: 303  LLIRRNGKLMFIRKANQLEVGDIAYRPLQDGDLILINRPPSVHQHSLIALSTKILPIQSV 362

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            VSINPLCC P LGDFDGDCLHGYIPQS+  R+EL ELVSL  QL N QDGRSLVSLTHDS
Sbjct: 363  VSINPLCCMPFLGDFDGDCLHGYIPQSIRSRIELGELVSLHQQLLNMQDGRSLVSLTHDS 422

Query: 2376 LTAAYLLTATKEFLTKFEMQ--QXXXXXXXXXXXXXXXXXPNFQTPLWTGEQLFGLLLPP 2203
            L AA+LLT+T  FL + E+Q  Q                  NF+  LWTG+Q F +LLP 
Sbjct: 423  LAAAHLLTSTDVFLKESELQQLQMLCLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPS 482

Query: 2202 TFDFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCE 2023
              +F   SK  +I   EV+     S   + + + LFS +FK  G KAL+++  +Q++LCE
Sbjct: 483  GMNFSCDSKLHII-DSEVLTCSSGSSWLQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCE 541

Query: 2022 YLSLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNP-EIQNLPYHY 1846
            +L++RG +VSLSD+Y+ SD YSRRK+   +   L+EAE+  ++KQ+LL+P  I  L  H 
Sbjct: 542  FLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHD 601

Query: 1845 QDEDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKG 1666
            + ED++   S Y Q++    V + SI +FKDVF DLL +V+  V+ DNSM+ MI+AGSKG
Sbjct: 602  ETEDVTYRQSDYIQSN--LSVVRSSIMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKG 659

Query: 1665 SLPKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGSYCSQSFFAVV 1486
            S+ K +QQ AC+GLQL A   PF +P +L+C  WN QK+ +      +     Q+ +AV+
Sbjct: 660  SMLKYVQQTACVGLQLPASKFPFRIPSQLSCVSWNRQKSLNCEAESTSEHVEGQNLYAVI 719

Query: 1485 NTSFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNGQ 1306
              SF++GLNPLE L+HAI GR+N FSE+A+VPGTLTRKLMY +RD++VAYDGTVR+  GQ
Sbjct: 720  RNSFIEGLNPLECLLHAISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQ 779

Query: 1305 QLVEFSYSMLEDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPINT 1126
             +++FSY   +D              N D  G  G PVGS AACSISE AY ALD P+N 
Sbjct: 780  HIMQFSYDTADDMC-----------CNHDLVGELGAPVGSWAACSISEAAYGALDHPVNG 828

Query: 1125 LEDSPLLKLKNVLECSK--SSASTVAFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSDL 952
            LEDSPL+ L+ V +C K  +S   V  LFLSK L+ +RY  EY +LEVKNHLERV FSDL
Sbjct: 829  LEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDL 888

Query: 951  IVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDMM 772
            + T++I YDG D +     PWT HFH+SK+M+ +KRL L F+  EL K YD  R +++  
Sbjct: 889  VETIMIIYDGCD-KTRKGGPWTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNA 947

Query: 771  LPRLCFLSKNCSSVKQ-KDDDTFCITIAAET-SELQVQLETVRDRVIPLLLATHIKGFWA 598
            +P +    + CS   Q   +   CIT+ A+  S    QL+T++ RVIP +L T +KGF  
Sbjct: 948  IPSVHISKRKCSVGDQCVQNSACCITLVAQAESNSMSQLDTIKKRVIPSILDTLLKGFLE 1007

Query: 597  SEKVEVLCESLPASGAELFLKVTMSKNLR-GSFWNALQNACIPMMDLIDWKRSHPNNTYN 421
             + VE+ C        EL +KV MS++ + G FW  LQNACIP+M+LIDW++S P N Y+
Sbjct: 1008 FKDVEIQCR----HDGELLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYD 1063

Query: 420  VCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQRD 241
            +  +YGID+AWK FV+SLKSVT+DIGR++ + HL++ AD LS TG+F  LS++GL QQR 
Sbjct: 1064 IFCSYGIDSAWKCFVESLKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRS 1123

Query: 240  DMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAGK 61
             +SISSPF++AC S PA  FINAAK  SVD L G+LDA+AWGKE   GT GPF+I++AGK
Sbjct: 1124 RLSISSPFSEACFSRPARSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGK 1183

Query: 60   VPKLNRSESMYKHL 19
              +  ++ES+Y  L
Sbjct: 1184 PHEPEQNESIYDFL 1197


>ref|XP_004970758.1| DNA-directed RNA polymerase IV subunit 1 isoform X5 [Setaria italica]
          Length = 1181

 Score =  974 bits (2519), Expect = 0.0
 Identities = 524/1034 (50%), Positives = 692/1034 (66%), Gaps = 8/1034 (0%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKLRXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            ++R H QF  LA+S    RV +C   SKL              G++WLKD VLSKRSDNA
Sbjct: 10   DYRQHPQFSVLASSLVSSRVSECLKSSKLYSKKTDVETSTDTYGMKWLKDAVLSKRSDNA 69

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FR  MVGDPKI L E+GIP ++A  L V+E ++SYNLE +N+ CN+ LLA       K +
Sbjct: 70   FRSIMVGDPKIRLWEIGIPENLASNLVVSEHVSSYNLENINLKCNLHLLA-------KEE 122

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            + IR   +L  ++K NQL+VGD+ YRPL++GD IL+NRPPSVHQHSLI LS +ILPI+SV
Sbjct: 123  LLIRRNGKLMFIRKANQLEVGDIAYRPLQDGDLILINRPPSVHQHSLIALSTKILPIQSV 182

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            VSINPLCC P LGDFDGDCLHGYIPQS+  R+EL ELVSL  QL N QDGRSLVSLTHDS
Sbjct: 183  VSINPLCCMPFLGDFDGDCLHGYIPQSIRSRIELGELVSLHQQLLNMQDGRSLVSLTHDS 242

Query: 2376 LTAAYLLTATKEFLTKFEMQ--QXXXXXXXXXXXXXXXXXPNFQTPLWTGEQLFGLLLPP 2203
            L AA+LLT+T  FL + E+Q  Q                  NF+  LWTG+Q F +LLP 
Sbjct: 243  LAAAHLLTSTDVFLKESELQQLQMLCLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPS 302

Query: 2202 TFDFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCE 2023
              +F   SK  +I   EV+     S   + + + LFS +FK  G KAL+++  +Q++LCE
Sbjct: 303  GMNFSCDSKLHII-DSEVLTCSSGSSWLQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCE 361

Query: 2022 YLSLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNP-EIQNLPYHY 1846
            +L++RG +VSLSD+Y+ SD YSRRK+   +   L+EAE+  ++KQ+LL+P  I  L  H 
Sbjct: 362  FLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHD 421

Query: 1845 QDEDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKG 1666
            + ED++   S Y Q++    V + SI +FKDVF DLL +V+  V+ DNSM+ MI+AGSKG
Sbjct: 422  ETEDVTYRQSDYIQSN--LSVVRSSIMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKG 479

Query: 1665 SLPKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGSYCSQSFFAVV 1486
            S+ K +QQ AC+GLQL A   PF +P +L+C  WN QK+ +      +     Q+ +AV+
Sbjct: 480  SMLKYVQQTACVGLQLPASKFPFRIPSQLSCVSWNRQKSLNCEAESTSEHVEGQNLYAVI 539

Query: 1485 NTSFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNGQ 1306
              SF++GLNPLE L+HAI GR+N FSE+A+VPGTLTRKLMY +RD++VAYDGTVR+  GQ
Sbjct: 540  RNSFIEGLNPLECLLHAISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQ 599

Query: 1305 QLVEFSYSMLEDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPINT 1126
             +++FSY   +D              N D  G  G PVGS AACSISE AY ALD P+N 
Sbjct: 600  HIMQFSYDTADDMC-----------CNHDLVGELGAPVGSWAACSISEAAYGALDHPVNG 648

Query: 1125 LEDSPLLKLKNVLECSK--SSASTVAFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSDL 952
            LEDSPL+ L+ V +C K  +S   V  LFLSK L+ +RY  EY +LEVKNHLERV FSDL
Sbjct: 649  LEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDL 708

Query: 951  IVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDMM 772
            + T++I YDG D +     PWT HFH+SK+M+ +KRL L F+  EL K YD  R +++  
Sbjct: 709  VETIMIIYDGCD-KTRKGGPWTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNA 767

Query: 771  LPRLCFLSKNCSSVKQ-KDDDTFCITIAAET-SELQVQLETVRDRVIPLLLATHIKGFWA 598
            +P +    + CS   Q   +   CIT+ A+  S    QL+T++ RVIP +L T +KGF  
Sbjct: 768  IPSVHISKRKCSVGDQCVQNSACCITLVAQAESNSMSQLDTIKKRVIPSILDTLLKGFLE 827

Query: 597  SEKVEVLCESLPASGAELFLKVTMSKNLR-GSFWNALQNACIPMMDLIDWKRSHPNNTYN 421
             + VE+ C        EL +KV MS++ + G FW  LQNACIP+M+LIDW++S P N Y+
Sbjct: 828  FKDVEIQCR----HDGELLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYD 883

Query: 420  VCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQRD 241
            +  +YGID+AWK FV+SLKSVT+DIGR++ + HL++ AD LS TG+F  LS++GL QQR 
Sbjct: 884  IFCSYGIDSAWKCFVESLKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRS 943

Query: 240  DMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAGK 61
             +SISSPF++AC S PA  FINAAK  SVD L G+LDA+AWGKE   GT GPF+I++AGK
Sbjct: 944  RLSISSPFSEACFSRPARSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGK 1003

Query: 60   VPKLNRSESMYKHL 19
              +  ++ES+Y  L
Sbjct: 1004 PHEPEQNESIYDFL 1017


>ref|XP_012701776.1| DNA-directed RNA polymerase IV subunit 1 isoform X3 [Setaria italica]
          Length = 1362

 Score =  974 bits (2519), Expect = 0.0
 Identities = 524/1034 (50%), Positives = 692/1034 (66%), Gaps = 8/1034 (0%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKLRXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            ++R H QF  LA+S    RV +C   SKL              G++WLKD VLSKRSDNA
Sbjct: 191  DYRQHPQFSVLASSLVSSRVSECLKSSKLYSKKTDVETSTDTYGMKWLKDAVLSKRSDNA 250

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FR  MVGDPKI L E+GIP ++A  L V+E ++SYNLE +N+ CN+ LLA       K +
Sbjct: 251  FRSIMVGDPKIRLWEIGIPENLASNLVVSEHVSSYNLENINLKCNLHLLA-------KEE 303

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            + IR   +L  ++K NQL+VGD+ YRPL++GD IL+NRPPSVHQHSLI LS +ILPI+SV
Sbjct: 304  LLIRRNGKLMFIRKANQLEVGDIAYRPLQDGDLILINRPPSVHQHSLIALSTKILPIQSV 363

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            VSINPLCC P LGDFDGDCLHGYIPQS+  R+EL ELVSL  QL N QDGRSLVSLTHDS
Sbjct: 364  VSINPLCCMPFLGDFDGDCLHGYIPQSIRSRIELGELVSLHQQLLNMQDGRSLVSLTHDS 423

Query: 2376 LTAAYLLTATKEFLTKFEMQ--QXXXXXXXXXXXXXXXXXPNFQTPLWTGEQLFGLLLPP 2203
            L AA+LLT+T  FL + E+Q  Q                  NF+  LWTG+Q F +LLP 
Sbjct: 424  LAAAHLLTSTDVFLKESELQQLQMLCLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPS 483

Query: 2202 TFDFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCE 2023
              +F   SK  +I   EV+     S   + + + LFS +FK  G KAL+++  +Q++LCE
Sbjct: 484  GMNFSCDSKLHII-DSEVLTCSSGSSWLQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCE 542

Query: 2022 YLSLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNP-EIQNLPYHY 1846
            +L++RG +VSLSD+Y+ SD YSRRK+   +   L+EAE+  ++KQ+LL+P  I  L  H 
Sbjct: 543  FLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHD 602

Query: 1845 QDEDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKG 1666
            + ED++   S Y Q++    V + SI +FKDVF DLL +V+  V+ DNSM+ MI+AGSKG
Sbjct: 603  ETEDVTYRQSDYIQSN--LSVVRSSIMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKG 660

Query: 1665 SLPKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGSYCSQSFFAVV 1486
            S+ K +QQ AC+GLQL A   PF +P +L+C  WN QK+ +      +     Q+ +AV+
Sbjct: 661  SMLKYVQQTACVGLQLPASKFPFRIPSQLSCVSWNRQKSLNCEAESTSEHVEGQNLYAVI 720

Query: 1485 NTSFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNGQ 1306
              SF++GLNPLE L+HAI GR+N FSE+A+VPGTLTRKLMY +RD++VAYDGTVR+  GQ
Sbjct: 721  RNSFIEGLNPLECLLHAISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQ 780

Query: 1305 QLVEFSYSMLEDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPINT 1126
             +++FSY   +D              N D  G  G PVGS AACSISE AY ALD P+N 
Sbjct: 781  HIMQFSYDTADDMC-----------CNHDLVGELGAPVGSWAACSISEAAYGALDHPVNG 829

Query: 1125 LEDSPLLKLKNVLECSK--SSASTVAFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSDL 952
            LEDSPL+ L+ V +C K  +S   V  LFLSK L+ +RY  EY +LEVKNHLERV FSDL
Sbjct: 830  LEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDL 889

Query: 951  IVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDMM 772
            + T++I YDG D +     PWT HFH+SK+M+ +KRL L F+  EL K YD  R +++  
Sbjct: 890  VETIMIIYDGCD-KTRKGGPWTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNA 948

Query: 771  LPRLCFLSKNCSSVKQ-KDDDTFCITIAAET-SELQVQLETVRDRVIPLLLATHIKGFWA 598
            +P +    + CS   Q   +   CIT+ A+  S    QL+T++ RVIP +L T +KGF  
Sbjct: 949  IPSVHISKRKCSVGDQCVQNSACCITLVAQAESNSMSQLDTIKKRVIPSILDTLLKGFLE 1008

Query: 597  SEKVEVLCESLPASGAELFLKVTMSKNLR-GSFWNALQNACIPMMDLIDWKRSHPNNTYN 421
             + VE+ C        EL +KV MS++ + G FW  LQNACIP+M+LIDW++S P N Y+
Sbjct: 1009 FKDVEIQCR----HDGELLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYD 1064

Query: 420  VCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQRD 241
            +  +YGID+AWK FV+SLKSVT+DIGR++ + HL++ AD LS TG+F  LS++GL QQR 
Sbjct: 1065 IFCSYGIDSAWKCFVESLKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRS 1124

Query: 240  DMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAGK 61
             +SISSPF++AC S PA  FINAAK  SVD L G+LDA+AWGKE   GT GPF+I++AGK
Sbjct: 1125 RLSISSPFSEACFSRPARSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGK 1184

Query: 60   VPKLNRSESMYKHL 19
              +  ++ES+Y  L
Sbjct: 1185 PHEPEQNESIYDFL 1198


>ref|XP_022682776.1| DNA-directed RNA polymerase IV subunit 1 isoform X2 [Setaria italica]
          Length = 1450

 Score =  974 bits (2519), Expect = 0.0
 Identities = 524/1034 (50%), Positives = 692/1034 (66%), Gaps = 8/1034 (0%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKLRXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            ++R H QF  LA+S    RV +C   SKL              G++WLKD VLSKRSDNA
Sbjct: 279  DYRQHPQFSVLASSLVSSRVSECLKSSKLYSKKTDVETSTDTYGMKWLKDAVLSKRSDNA 338

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FR  MVGDPKI L E+GIP ++A  L V+E ++SYNLE +N+ CN+ LLA       K +
Sbjct: 339  FRSIMVGDPKIRLWEIGIPENLASNLVVSEHVSSYNLENINLKCNLHLLA-------KEE 391

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            + IR   +L  ++K NQL+VGD+ YRPL++GD IL+NRPPSVHQHSLI LS +ILPI+SV
Sbjct: 392  LLIRRNGKLMFIRKANQLEVGDIAYRPLQDGDLILINRPPSVHQHSLIALSTKILPIQSV 451

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            VSINPLCC P LGDFDGDCLHGYIPQS+  R+EL ELVSL  QL N QDGRSLVSLTHDS
Sbjct: 452  VSINPLCCMPFLGDFDGDCLHGYIPQSIRSRIELGELVSLHQQLLNMQDGRSLVSLTHDS 511

Query: 2376 LTAAYLLTATKEFLTKFEMQ--QXXXXXXXXXXXXXXXXXPNFQTPLWTGEQLFGLLLPP 2203
            L AA+LLT+T  FL + E+Q  Q                  NF+  LWTG+Q F +LLP 
Sbjct: 512  LAAAHLLTSTDVFLKESELQQLQMLCLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPS 571

Query: 2202 TFDFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCE 2023
              +F   SK  +I   EV+     S   + + + LFS +FK  G KAL+++  +Q++LCE
Sbjct: 572  GMNFSCDSKLHII-DSEVLTCSSGSSWLQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCE 630

Query: 2022 YLSLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNP-EIQNLPYHY 1846
            +L++RG +VSLSD+Y+ SD YSRRK+   +   L+EAE+  ++KQ+LL+P  I  L  H 
Sbjct: 631  FLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHD 690

Query: 1845 QDEDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKG 1666
            + ED++   S Y Q++    V + SI +FKDVF DLL +V+  V+ DNSM+ MI+AGSKG
Sbjct: 691  ETEDVTYRQSDYIQSN--LSVVRSSIMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKG 748

Query: 1665 SLPKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGSYCSQSFFAVV 1486
            S+ K +QQ AC+GLQL A   PF +P +L+C  WN QK+ +      +     Q+ +AV+
Sbjct: 749  SMLKYVQQTACVGLQLPASKFPFRIPSQLSCVSWNRQKSLNCEAESTSEHVEGQNLYAVI 808

Query: 1485 NTSFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNGQ 1306
              SF++GLNPLE L+HAI GR+N FSE+A+VPGTLTRKLMY +RD++VAYDGTVR+  GQ
Sbjct: 809  RNSFIEGLNPLECLLHAISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQ 868

Query: 1305 QLVEFSYSMLEDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPINT 1126
             +++FSY   +D              N D  G  G PVGS AACSISE AY ALD P+N 
Sbjct: 869  HIMQFSYDTADDMC-----------CNHDLVGELGAPVGSWAACSISEAAYGALDHPVNG 917

Query: 1125 LEDSPLLKLKNVLECSK--SSASTVAFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSDL 952
            LEDSPL+ L+ V +C K  +S   V  LFLSK L+ +RY  EY +LEVKNHLERV FSDL
Sbjct: 918  LEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDL 977

Query: 951  IVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDMM 772
            + T++I YDG D +     PWT HFH+SK+M+ +KRL L F+  EL K YD  R +++  
Sbjct: 978  VETIMIIYDGCD-KTRKGGPWTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNA 1036

Query: 771  LPRLCFLSKNCSSVKQ-KDDDTFCITIAAET-SELQVQLETVRDRVIPLLLATHIKGFWA 598
            +P +    + CS   Q   +   CIT+ A+  S    QL+T++ RVIP +L T +KGF  
Sbjct: 1037 IPSVHISKRKCSVGDQCVQNSACCITLVAQAESNSMSQLDTIKKRVIPSILDTLLKGFLE 1096

Query: 597  SEKVEVLCESLPASGAELFLKVTMSKNLR-GSFWNALQNACIPMMDLIDWKRSHPNNTYN 421
             + VE+ C        EL +KV MS++ + G FW  LQNACIP+M+LIDW++S P N Y+
Sbjct: 1097 FKDVEIQCR----HDGELLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYD 1152

Query: 420  VCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQRD 241
            +  +YGID+AWK FV+SLKSVT+DIGR++ + HL++ AD LS TG+F  LS++GL QQR 
Sbjct: 1153 IFCSYGIDSAWKCFVESLKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRS 1212

Query: 240  DMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAGK 61
             +SISSPF++AC S PA  FINAAK  SVD L G+LDA+AWGKE   GT GPF+I++AGK
Sbjct: 1213 RLSISSPFSEACFSRPARSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGK 1272

Query: 60   VPKLNRSESMYKHL 19
              +  ++ES+Y  L
Sbjct: 1273 PHEPEQNESIYDFL 1286


>ref|XP_004970757.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Setaria italica]
 ref|XP_022682775.1| DNA-directed RNA polymerase IV subunit 1 isoform X1 [Setaria italica]
          Length = 1451

 Score =  974 bits (2519), Expect = 0.0
 Identities = 524/1034 (50%), Positives = 692/1034 (66%), Gaps = 8/1034 (0%)
 Frame = -2

Query: 3096 EFRHHQQFGPLATSYTMGRVLDCWNVSKLRXXXXXXXXXXXXXGLRWLKDVVLSKRSDNA 2917
            ++R H QF  LA+S    RV +C   SKL              G++WLKD VLSKRSDNA
Sbjct: 280  DYRQHPQFSVLASSLVSSRVSECLKSSKLYSKKTDVETSTDTYGMKWLKDAVLSKRSDNA 339

Query: 2916 FRMTMVGDPKIGLHEVGIPADIARKLTVTEKINSYNLEKLNMVCNISLLAHMCHPFDKAK 2737
            FR  MVGDPKI L E+GIP ++A  L V+E ++SYNLE +N+ CN+ LLA       K +
Sbjct: 340  FRSIMVGDPKIRLWEIGIPENLASNLVVSEHVSSYNLENINLKCNLHLLA-------KEE 392

Query: 2736 IFIRSKEELTSLQKTNQLKVGDVLYRPLENGDTILVNRPPSVHQHSLIGLSVRILPIESV 2557
            + IR   +L  ++K NQL+VGD+ YRPL++GD IL+NRPPSVHQHSLI LS +ILPI+SV
Sbjct: 393  LLIRRNGKLMFIRKANQLEVGDIAYRPLQDGDLILINRPPSVHQHSLIALSTKILPIQSV 452

Query: 2556 VSINPLCCAPLLGDFDGDCLHGYIPQSVSCRVELQELVSLKHQLFNAQDGRSLVSLTHDS 2377
            VSINPLCC P LGDFDGDCLHGYIPQS+  R+EL ELVSL  QL N QDGRSLVSLTHDS
Sbjct: 453  VSINPLCCMPFLGDFDGDCLHGYIPQSIRSRIELGELVSLHQQLLNMQDGRSLVSLTHDS 512

Query: 2376 LTAAYLLTATKEFLTKFEMQ--QXXXXXXXXXXXXXXXXXPNFQTPLWTGEQLFGLLLPP 2203
            L AA+LLT+T  FL + E+Q  Q                  NF+  LWTG+Q F +LLP 
Sbjct: 513  LAAAHLLTSTDVFLKESELQQLQMLCLSVSTTPVPAIIKSMNFEGSLWTGKQFFSMLLPS 572

Query: 2202 TFDFVDSSKNIVIKKGEVMAYPDVSFGHRKTISSLFSSIFKSNGSKALNYIYCSQDLLCE 2023
              +F   SK  +I   EV+     S   + + + LFS +FK  G KAL+++  +Q++LCE
Sbjct: 573  GMNFSCDSKLHII-DSEVLTCSSGSSWLQNSTTGLFSIMFKQYGRKALDFLSSAQEVLCE 631

Query: 2022 YLSLRGFTVSLSDIYLTSDSYSRRKMIDEIYFGLEEAEDVCQVKQLLLNP-EIQNLPYHY 1846
            +L++RG +VSLSD+Y+ SD YSRRK+   +   L+EAE+  ++KQ+LL+P  I  L  H 
Sbjct: 632  FLTMRGLSVSLSDLYMFSDHYSRRKLTQGVKLALDEAEEAFRIKQILLDPINIPVLKCHD 691

Query: 1845 QDEDISCCLSQYKQASKRAFVSQISIAAFKDVFQDLLGVVRQFVNKDNSMLAMIDAGSKG 1666
            + ED++   S Y Q++    V + SI +FKDVF DLL +V+  V+ DNSM+ MI+AGSKG
Sbjct: 692  ETEDVTYRQSDYIQSN--LSVVRSSIMSFKDVFNDLLKMVQHHVSNDNSMMVMINAGSKG 749

Query: 1665 SLPKLIQQGACLGLQLSACPLPFEVPHKLTCFMWNNQKAQDSRLFDAAGSYCSQSFFAVV 1486
            S+ K +QQ AC+GLQL A   PF +P +L+C  WN QK+ +      +     Q+ +AV+
Sbjct: 750  SMLKYVQQTACVGLQLPASKFPFRIPSQLSCVSWNRQKSLNCEAESTSEHVEGQNLYAVI 809

Query: 1485 NTSFLDGLNPLESLVHAICGRSNLFSENAEVPGTLTRKLMYFMRDIYVAYDGTVRNRNGQ 1306
              SF++GLNPLE L+HAI GR+N FSE+A+VPGTLTRKLMY +RD++VAYDGTVR+  GQ
Sbjct: 810  RNSFIEGLNPLECLLHAISGRANFFSEHADVPGTLTRKLMYHLRDLHVAYDGTVRSSYGQ 869

Query: 1305 QLVEFSYSMLEDSTDYGEIFDAYNDKNTDYSGLGGQPVGSLAACSISETAYAALDLPINT 1126
             +++FSY   +D              N D  G  G PVGS AACSISE AY ALD P+N 
Sbjct: 870  HIMQFSYDTADDMC-----------CNHDLVGELGAPVGSWAACSISEAAYGALDHPVNG 918

Query: 1125 LEDSPLLKLKNVLECSK--SSASTVAFLFLSKRLEGWRYGFEYGALEVKNHLERVMFSDL 952
            LEDSPL+ L+ V +C K  +S   V  LFLSK L+ +RY  EY +LEVKNHLERV FSDL
Sbjct: 919  LEDSPLMNLQEVFKCHKATNSGDHVGLLFLSKHLKKYRYSLEYASLEVKNHLERVNFSDL 978

Query: 951  IVTVLIHYDGLDVQGTNISPWTMHFHLSKDMLMRKRLNLQFIKNELRKCYDNRREKIDMM 772
            + T++I YDG D +     PWT HFH+SK+M+ +KRL L F+  EL K YD  R +++  
Sbjct: 979  VETIMIIYDGCD-KTRKGGPWTTHFHISKEMMKKKRLGLGFVVEELTKEYDATRNQLNNA 1037

Query: 771  LPRLCFLSKNCSSVKQ-KDDDTFCITIAAET-SELQVQLETVRDRVIPLLLATHIKGFWA 598
            +P +    + CS   Q   +   CIT+ A+  S    QL+T++ RVIP +L T +KGF  
Sbjct: 1038 IPSVHISKRKCSVGDQCVQNSACCITLVAQAESNSMSQLDTIKKRVIPSILDTLLKGFLE 1097

Query: 597  SEKVEVLCESLPASGAELFLKVTMSKNLR-GSFWNALQNACIPMMDLIDWKRSHPNNTYN 421
             + VE+ C        EL +KV MS++ + G FW  LQNACIP+M+LIDW++S P N Y+
Sbjct: 1098 FKDVEIQCR----HDGELLVKVGMSEHCKAGRFWATLQNACIPVMELIDWEQSQPKNVYD 1153

Query: 420  VCSTYGIDAAWKYFVKSLKSVTADIGRDILKRHLIMTADCLSATGEFHGLSTKGLRQQRD 241
            +  +YGID+AWK FV+SLKSVT+DIGR++ + HL++ AD LS TG+F  LS++GL QQR 
Sbjct: 1154 IFCSYGIDSAWKCFVESLKSVTSDIGRNVRREHLLIVADSLSVTGQFQALSSQGLNQQRS 1213

Query: 240  DMSISSPFTQACLSHPANCFINAAKLGSVDRLSGTLDAVAWGKEAPVGTGGPFQIIYAGK 61
             +SISSPF++AC S PA  FINAAK  SVD L G+LDA+AWGKE   GT GPF+I++AGK
Sbjct: 1214 RLSISSPFSEACFSRPARSFINAAKHCSVDNLCGSLDAIAWGKEPFNGTSGPFEIMHAGK 1273

Query: 60   VPKLNRSESMYKHL 19
              +  ++ES+Y  L
Sbjct: 1274 PHEPEQNESIYDFL 1287