BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00043321
         (1267 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009381640.1| PREDICTED: probable RNA-dependent RNA polyme...   689   0.0  
ref|XP_019703492.1| PREDICTED: probable RNA-dependent RNA polyme...   625   0.0  
ref|XP_008780950.1| PREDICTED: probable RNA-dependent RNA polyme...   625   0.0  
ref|XP_020110295.1| probable RNA-dependent RNA polymerase 2 [Ana...   611   0.0  
gb|OAY66642.1| putative RNA-dependent RNA polymerase 2 [Ananas c...   600   0.0  
gb|ACR38600.1| unknown [Zea mays]                                     548   0.0  
gb|PKA52670.1| putative RNA-dependent RNA polymerase 2 [Apostasi...   564   0.0  
ref|XP_020701436.1| probable RNA-dependent RNA polymerase 2 [Den...   563   0.0  
gb|ONM16858.1| mediator of paramutation1 [Zea mays]                   548   0.0  
gb|ONM16849.1| mediator of paramutation1 [Zea mays] >gi|11426575...   548   0.0  
ref|XP_008453109.1| PREDICTED: RNA-dependent RNA polymerase 2 [C...   555   0.0  
ref|XP_015581229.1| PREDICTED: RNA-dependent RNA polymerase 2 is...   549   0.0  
gb|POF03118.1| rna-dependent rna polymerase 2 [Quercus suber]         530   0.0  
gb|ONM16854.1| mediator of paramutation1 [Zea mays]                   548   0.0  
ref|XP_002511431.1| PREDICTED: RNA-dependent RNA polymerase 2 is...   549   0.0  
gb|ONM16859.1| mediator of paramutation1 [Zea mays]                   548   0.0  
gb|OVA03721.1| RNA recognition motif domain [Macleaya cordata]        551   0.0  
ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis...   551   0.0  
ref|XP_010271987.1| PREDICTED: RNA-dependent RNA polymerase 2 [N...   550   0.0  
ref|XP_008668575.1| RNA-dependent DNA polymerase isoform X1 [Zea...   548   0.0  

>ref|XP_009381640.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Musa acuminata
            subsp. malaccensis]
          Length = 1106

 Score =  689 bits (1777), Expect = 0.0
 Identities = 328/401 (81%), Positives = 357/401 (89%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            KCRIFVPKGRVLIGCLDETC LDYGQ YIKVTM KEEL  ED  FL+  D+ SA+VVGKV
Sbjct: 707  KCRIFVPKGRVLIGCLDETCNLDYGQAYIKVTMTKEELQNEDQTFLRNTDQTSAVVVGKV 766

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
            +VT+NPCLHPGDIRVLQAVYD GLDDMGLVDCI+FPQKG RPHPNECSGGDLDGDLYF+ 
Sbjct: 767  VVTRNPCLHPGDIRVLQAVYDVGLDDMGLVDCIIFPQKGTRPHPNECSGGDLDGDLYFVC 826

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WD+ LIPPET TPMDYTPRRPRLMDHDVTLEEIQKFF+DYMINDTLG+IST HLIYADSE
Sbjct: 827  WDKNLIPPETDTPMDYTPRRPRLMDHDVTLEEIQKFFVDYMINDTLGVISTTHLIYADSE 886

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            PTKARS KCLELANLHS AVDFAKTGAPAEMPRVLRPK FPDFMERW++  +IS GVIGK
Sbjct: 887  PTKARSPKCLELANLHSEAVDFAKTGAPAEMPRVLRPKEFPDFMERWDRSTFISPGVIGK 946

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYRAA  H  D NS++ I +V +   YDYDLQVEGF+ FL  A+EYY++YSEKLSLLMNY
Sbjct: 947  LYRAASIHFEDVNSDATISKVSA---YDYDLQVEGFEEFLSPAKEYYDRYSEKLSLLMNY 1003

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            +GAEHEDEILTGNLRNKS+YLQKDKKRYGEMKDRML+G+RSLQ+EV GWF+CSC ERDSS
Sbjct: 1004 YGAEHEDEILTGNLRNKSLYLQKDKKRYGEMKDRMLVGVRSLQQEVEGWFRCSCAERDSS 1063

Query: 1083 RMASAWYHVTYHPDYHPETRFISFPWILCDVLLRIKASKSN 1205
            RMASAWYHVTYH DYHPET F+SFPWIL DVLL IKA K +
Sbjct: 1064 RMASAWYHVTYHRDYHPETTFLSFPWILSDVLLNIKAVKKH 1104


>ref|XP_019703492.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Elaeis
            guineensis]
          Length = 1117

 Score =  625 bits (1613), Expect = 0.0
 Identities = 292/401 (72%), Positives = 341/401 (85%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            KCRIFVPKGRVL+GCLDET  LDYGQVY+K+TM KEEL   +  F    D+ +A V+ KV
Sbjct: 707  KCRIFVPKGRVLLGCLDETGSLDYGQVYVKITMTKEELQDTNQTFFDKVDQTAAAVIQKV 766

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
            +VT+NPCLHPGD+RVLQAVY+  LD+MGLVDCIVFPQ+G+RPHP+ECSGGDLDGDLYF+ 
Sbjct: 767  VVTRNPCLHPGDVRVLQAVYNPQLDNMGLVDCIVFPQRGRRPHPSECSGGDLDGDLYFVC 826

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WDEKLIPP+T TPMDY  RR R  DHDVTLEEIQKFF+DYMINDTLG+ISTAHL+YAD E
Sbjct: 827  WDEKLIPPKTDTPMDYYARRQRHTDHDVTLEEIQKFFVDYMINDTLGVISTAHLVYADRE 886

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KARS KCL+LANLHSMAVDFAKTG+ AEMPR+LRPK FPDFMERW++PMY+STG++GK
Sbjct: 887  PAKARSPKCLQLANLHSMAVDFAKTGSSAEMPRILRPKEFPDFMERWDRPMYVSTGILGK 946

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYR+A SH    N++ +  E+     YDYDLQV GF+AFL  AE+Y N YSE+LS LMNY
Sbjct: 947  LYRSASSHIERPNTDLMDAEMLPQSAYDYDLQVSGFEAFLEVAEDYRNMYSERLSSLMNY 1006

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            +GAEHEDEILTGNLR++SMYLQ+DKK+YGEMKDR+L+G++SL KEV GWFK SC E +S 
Sbjct: 1007 YGAEHEDEILTGNLRSRSMYLQRDKKKYGEMKDRILLGVKSLHKEVQGWFKRSCAESESL 1066

Query: 1083 RMASAWYHVTYHPDYHPETRFISFPWILCDVLLRIKASKSN 1205
            RMASAWYHVTYHP Y+ E RF+SFPWIL D LL IKASKS+
Sbjct: 1067 RMASAWYHVTYHPSYYSENRFLSFPWILSDALLSIKASKSH 1107


>ref|XP_008780950.1| PREDICTED: probable RNA-dependent RNA polymerase 2 [Phoenix
            dactylifera]
          Length = 1117

 Score =  625 bits (1612), Expect = 0.0
 Identities = 295/402 (73%), Positives = 346/402 (86%), Gaps = 1/402 (0%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKE-DHCFLKIADERSAIVVGK 179
            KCRIFVPKGRVL+GCLDET  LDYGQ+Y+KVTM KEEL    + CF K+ D+ +A+VV K
Sbjct: 707  KCRIFVPKGRVLLGCLDETGSLDYGQIYVKVTMTKEELQHTYETCFDKV-DQTAAVVVQK 765

Query: 180  VIVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFI 359
            V+VT+NPCLHPGD+R+LQAVY+  LD+MGLVDCIVFPQKG+RPHPNECSGGDLDGDLYF+
Sbjct: 766  VVVTRNPCLHPGDVRILQAVYNPQLDNMGLVDCIVFPQKGRRPHPNECSGGDLDGDLYFV 825

Query: 360  SWDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADS 539
             WDEKLIPP+  TPMDY  RR R  DHDVTLEEIQKFF+DYMINDTLGIISTAHL+YADS
Sbjct: 826  CWDEKLIPPKMDTPMDYNARRQRHTDHDVTLEEIQKFFVDYMINDTLGIISTAHLVYADS 885

Query: 540  EPTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIG 719
            EP KA+S KCLELANLHSMAVDFAKTG+ AEMPR+L+PK+FPDFMERW++ MY+STGV+G
Sbjct: 886  EPGKAQSPKCLELANLHSMAVDFAKTGSSAEMPRILKPKMFPDFMERWDRTMYVSTGVLG 945

Query: 720  KLYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMN 899
            KLYRAA  H    N++ +  E+     YD+DL+++GF+AFL  AE+YYNQYSE+LS LM 
Sbjct: 946  KLYRAASRHIERPNTDPMDAEMLPQSAYDHDLEIKGFEAFLEVAEDYYNQYSERLSSLMK 1005

Query: 900  YFGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDS 1079
            Y+GAEHEDEILTGNLR++SMYLQ+DKK+YGEMKDR+LIG++SL KEV GWFK SC E +S
Sbjct: 1006 YYGAEHEDEILTGNLRSRSMYLQRDKKKYGEMKDRILIGVKSLHKEVQGWFKSSCVESES 1065

Query: 1080 SRMASAWYHVTYHPDYHPETRFISFPWILCDVLLRIKASKSN 1205
             RMASAWYHVTYHP Y+ E RF+SFPWIL D LL IKASKS+
Sbjct: 1066 LRMASAWYHVTYHPSYYSENRFLSFPWILSDALLSIKASKSH 1107


>ref|XP_020110295.1| probable RNA-dependent RNA polymerase 2 [Ananas comosus]
          Length = 1125

 Score =  611 bits (1575), Expect = 0.0
 Identities = 287/404 (71%), Positives = 339/404 (83%), Gaps = 5/404 (1%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            KCRIFVPKGRVL+GCLDE   L+YGQVY+++T+ KEEL   D  F    DE +A++VGKV
Sbjct: 710  KCRIFVPKGRVLVGCLDEIGLLEYGQVYVRITLTKEELKDADQTFFHKVDETTAVIVGKV 769

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
            +VTKNPCLHPGDIRVL+AVYD  LDDMGLVDC+VFPQKGKRPHPNECSGGDLDGDLYF+ 
Sbjct: 770  VVTKNPCLHPGDIRVLEAVYDVQLDDMGLVDCVVFPQKGKRPHPNECSGGDLDGDLYFVC 829

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WD +L+P  T TPMDYT RRPR+MDHDVTLEEIQKFF+DYMI+D+LGIIST HL+YADSE
Sbjct: 830  WDRRLVPDNTDTPMDYTARRPRIMDHDVTLEEIQKFFVDYMISDSLGIISTTHLVYADSE 889

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KARS KCLELA+LHSMAVDFAKTGAPA+MPRVL+PK +PDFMERW++ MY STGV+GK
Sbjct: 890  PMKARSPKCLELASLHSMAVDFAKTGAPADMPRVLKPKEYPDFMERWDRSMYKSTGVLGK 949

Query: 723  LYRAARSH-----SGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLS 887
            LYRA  +H     S D +  + IPE      YD DL+VEGF+AFL +A+E+Y+QYSEKLS
Sbjct: 950  LYRAVSTHIEETLSFDTDFSNSIPEA----AYDRDLEVEGFEAFLEAAQEFYDQYSEKLS 1005

Query: 888  LLMNYFGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCD 1067
             LMNY+GAE+EDEILTGNLRN+S+YL KD+KRYGEMKDR+L+ ++ L KEV GWF  SC 
Sbjct: 1006 SLMNYYGAEYEDEILTGNLRNRSLYLVKDRKRYGEMKDRILVVVKGLHKEVGGWFNSSCA 1065

Query: 1068 ERDSSRMASAWYHVTYHPDYHPETRFISFPWILCDVLLRIKASK 1199
            + DS +MASAWYHVTYHP+Y P+ RF+SFPW + D LL IK+SK
Sbjct: 1066 DNDSLKMASAWYHVTYHPNYSPKNRFLSFPWTISDALLSIKSSK 1109


>gb|OAY66642.1| putative RNA-dependent RNA polymerase 2 [Ananas comosus]
          Length = 947

 Score =  600 bits (1547), Expect = 0.0
 Identities = 284/404 (70%), Positives = 336/404 (83%), Gaps = 5/404 (1%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            KCRIFVPKGRVL+GCLDE   L+YGQVY+++T+ KEEL   D  F    DE +A++VGKV
Sbjct: 536  KCRIFVPKGRVLVGCLDEIGLLEYGQVYVRITLTKEELKDADQTFFHKVDETTAVIVGKV 595

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
            +VTKNPCLHPGDIRVL+AVYD  LDDMGLVDC+VFPQKGKRPHPNECSGGDLDGDLYF+ 
Sbjct: 596  VVTKNPCLHPGDIRVLEAVYDVQLDDMGLVDCVVFPQKGKRPHPNECSGGDLDGDLYFVC 655

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WD +L+P  T TPMDYT RRPR+MDHD    EIQKFF+DYMI+D+LGIIST HL+YADSE
Sbjct: 656  WDRRLVPDNTDTPMDYTARRPRIMDHD----EIQKFFVDYMISDSLGIISTTHLVYADSE 711

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KARS KCLELA+LHSMAVDFAKTGAPA+MPRVL+PK +PDFMERW++ MY STGV+GK
Sbjct: 712  PMKARSPKCLELASLHSMAVDFAKTGAPADMPRVLKPKEYPDFMERWDRSMYKSTGVLGK 771

Query: 723  LYRAARSH-----SGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLS 887
            LYRA  +H     S D +  + IPE      YD DL+VEGF+AFL +A+E+Y+QYSEKLS
Sbjct: 772  LYRAVSTHIEETLSFDTDFSNSIPEA----AYDRDLEVEGFEAFLEAAQEFYDQYSEKLS 827

Query: 888  LLMNYFGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCD 1067
             LMNY+GAE+EDEILTGNLRN+S+YL KD+KRYGEMKDR+L+ ++ L KEV GWFK SC 
Sbjct: 828  SLMNYYGAEYEDEILTGNLRNRSLYLVKDRKRYGEMKDRILVVVKGLHKEVGGWFKSSCA 887

Query: 1068 ERDSSRMASAWYHVTYHPDYHPETRFISFPWILCDVLLRIKASK 1199
            + DS +MASAWYHVTYHP+Y P+ RF+SFPW + D LL IK+SK
Sbjct: 888  DNDSLKMASAWYHVTYHPNYSPKNRFLSFPWTISDALLSIKSSK 931


>gb|ACR38600.1| unknown [Zea mays]
          Length = 525

 Score =  548 bits (1412), Expect = 0.0
 Identities = 258/399 (64%), Positives = 316/399 (79%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            +C+I V KGRVLIGCLDETC+L+YGQVYI++T   +E    +  F    D ++A++VGKV
Sbjct: 112  RCKIHVQKGRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKV 171

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
             +TKNPCLHPGD+RVL+AVYD GLD  GL+DC+VFPQ+G+RPHPNECSGGDLDGDL+FI+
Sbjct: 172  AITKNPCLHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFIT 231

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WD+KLIP +   PMDYT  RPR+MDH VTLEEIQK F+ YMINDTLG ISTAHLI+AD +
Sbjct: 232  WDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRD 291

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KARS +C++LA LHSMAVDFAKTGAPAEMP  LRP+ FPDFMERWE+PMY+S GV+GK
Sbjct: 292  PLKARSPECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGK 351

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYRAA  H  D  +E+++P       YD DL+V GFD FL +AEE Y  Y+E+L  LM Y
Sbjct: 352  LYRAALRHEED--AEALLPAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAERLGALMTY 409

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            + AE EDEILTGN+RNK +YL++D KRY EMKDR++  + +L  EV GW + +C E D+S
Sbjct: 410  YSAEREDEILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLR-ACKEDDAS 468

Query: 1083 RMASAWYHVTYHPDYHPETRFISFPWILCDVLLRIKASK 1199
            R+ASAWYHVTYHPD   E RF SFPWI+CD LL IKA++
Sbjct: 469  RVASAWYHVTYHPDRRGEKRFWSFPWIICDTLLAIKAAR 507


>gb|PKA52670.1| putative RNA-dependent RNA polymerase 2 [Apostasia shenzhenica]
          Length = 1120

 Score =  564 bits (1454), Expect = 0.0
 Identities = 267/412 (64%), Positives = 327/412 (79%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            +CRIFVPKGR+L+GCLDE+  LDYGQV++++T+ KEEL   +  F K AD  +A++ GKV
Sbjct: 710  RCRIFVPKGRILLGCLDESGTLDYGQVFLRITLTKEELGNMNQVFFKEADHSTAVITGKV 769

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
            +VTKNPCLHPGDIRVL+AVYD  LD+MG VDC+VFPQKGKRPHPNECSGGDLDGDLYFIS
Sbjct: 770  MVTKNPCLHPGDIRVLEAVYDLHLDEMGFVDCVVFPQKGKRPHPNECSGGDLDGDLYFIS 829

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WDE+L+PP+T  P+DY     RL DH+VTL EIQKFF++YMIND+LG ISTAHL+YADSE
Sbjct: 830  WDERLMPPQTDPPLDYIGLSSRLQDHEVTLVEIQKFFVNYMINDSLGAISTAHLVYADSE 889

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KARS KCLELA+LHSMAVDFAKTG PAEMPR+LRPK FPDFMERW++PMY S G++GK
Sbjct: 890  PLKARSPKCLELASLHSMAVDFAKTGVPAEMPRILRPKEFPDFMERWDRPMYPSKGILGK 949

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYRA  SH+    SE+I     +  +YD DL+VEGF+ FL  A+++YNQY+EKLS LMNY
Sbjct: 950  LYRATSSHNSSETSETIWSRELAAASYDMDLEVEGFEMFLKPAKDHYNQYAEKLSFLMNY 1009

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            FGA+ EDEILTG +R+ S Y+ KDKK++G+M DR+ I +R L +EV  W      E +S 
Sbjct: 1010 FGAKSEDEILTGYMRSCSDYVLKDKKKFGDMIDRITIAVRCLHEEVKSWL-TGGRESESM 1068

Query: 1083 RMASAWYHVTYHPDYHPETRFISFPWILCDVLLRIKASKSNDQIKVNNSSDK 1238
            R ASAWYHVTYHPD+    +F+SFPWI+CDVL+ IK SK   +I    S D+
Sbjct: 1069 RTASAWYHVTYHPDFWSPGKFLSFPWIVCDVLMSIKDSKIYRRIGRGESKDQ 1120


>ref|XP_020701436.1| probable RNA-dependent RNA polymerase 2 [Dendrobium catenatum]
 gb|PKU68673.1| RNA-dependent RNA polymerase 2 [Dendrobium catenatum]
          Length = 1117

 Score =  563 bits (1452), Expect = 0.0
 Identities = 264/402 (65%), Positives = 322/402 (80%), Gaps = 1/402 (0%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            +CRIFVPKGR+LIGCLDE+  LDYGQV+++VTM KEE   +   F K AD  + ++ G+V
Sbjct: 707  RCRIFVPKGRILIGCLDESGTLDYGQVFLRVTMTKEEQKNKSQTFFKDADHATVVITGRV 766

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
            +VTKNPCLHPGDIRVL+A+ D  LD+MGLVDC+VFPQKG+RPHPNECSGGDLDGDLYF+S
Sbjct: 767  VVTKNPCLHPGDIRVLEAICDPQLDEMGLVDCLVFPQKGERPHPNECSGGDLDGDLYFVS 826

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WDE+L+P +T  PMDY   RPRL DH+VTLEEI KFF+DYMIND LG ISTAHL+YADSE
Sbjct: 827  WDERLVPLQTDPPMDYIGLRPRLQDHEVTLEEIHKFFVDYMINDNLGAISTAHLVYADSE 886

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KARS KCL+LANLHSMAVDFAKTG PAEMPR+LRPK FPDFMERW++ MY S GV+GK
Sbjct: 887  PLKARSPKCLQLANLHSMAVDFAKTGVPAEMPRILRPKEFPDFMERWDRSMYTSKGVLGK 946

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYR+A +H     S +   E  +  +YD DL+VEGF+ FL  AE+YYNQY+EKLS LMNY
Sbjct: 947  LYRSATAHQNKETSNTFWSEELAAASYDNDLEVEGFEMFLKPAEDYYNQYAEKLSFLMNY 1006

Query: 903  FGAEHEDEILTGNLRNKS-MYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDS 1079
            FGA HEDEILTG +R+    Y+ +DKK++G++ DR++I ++SL +EV  WF  SC E +S
Sbjct: 1007 FGAVHEDEILTGYVRSGGPSYVLRDKKKFGDIADRIMIAVKSLHQEVKSWFS-SCRESES 1065

Query: 1080 SRMASAWYHVTYHPDYHPETRFISFPWILCDVLLRIKASKSN 1205
             +MASAWYH+T HP Y    +F+SFPWI+ DVLL IK SKS+
Sbjct: 1066 LKMASAWYHITCHPKYWSSNKFLSFPWIIWDVLLNIKDSKSS 1107


>gb|ONM16858.1| mediator of paramutation1 [Zea mays]
          Length = 688

 Score =  548 bits (1412), Expect = 0.0
 Identities = 258/399 (64%), Positives = 316/399 (79%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            +C+I V KGRVLIGCLDETC+L+YGQVYI++T   +E    +  F    D ++A++VGKV
Sbjct: 275  RCKIHVQKGRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKV 334

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
             +TKNPCLHPGD+RVL+AVYD GLD  GL+DC+VFPQ+G+RPHPNECSGGDLDGDL+FI+
Sbjct: 335  AITKNPCLHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFIT 394

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WD+KLIP +   PMDYT  RPR+MDH VTLEEIQK F+ YMINDTLG ISTAHLI+AD +
Sbjct: 395  WDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRD 454

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KARS +C++LA LHSMAVDFAKTGAPAEMP  LRP+ FPDFMERWE+PMY+S GV+GK
Sbjct: 455  PLKARSPECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGK 514

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYRAA  H  D  +E+++P       YD DL+V GFD FL +AEE Y  Y+E+L  LM Y
Sbjct: 515  LYRAALRHEED--AEALLPAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAERLGALMTY 572

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            + AE EDEILTGN+RNK +YL++D KRY EMKDR++  + +L  EV GW + +C E D+S
Sbjct: 573  YSAEREDEILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLR-ACKEDDAS 631

Query: 1083 RMASAWYHVTYHPDYHPETRFISFPWILCDVLLRIKASK 1199
            R+ASAWYHVTYHPD   E RF SFPWI+CD LL IKA++
Sbjct: 632  RVASAWYHVTYHPDRRGEKRFWSFPWIICDTLLAIKAAR 670


>gb|ONM16849.1| mediator of paramutation1 [Zea mays]
 gb|ONM16850.1| mediator of paramutation1 [Zea mays]
 gb|ONM16851.1| mediator of paramutation1 [Zea mays]
 gb|ONM16852.1| mediator of paramutation1 [Zea mays]
 gb|ONM16856.1| mediator of paramutation1 [Zea mays]
          Length = 860

 Score =  548 bits (1412), Expect = 0.0
 Identities = 258/399 (64%), Positives = 316/399 (79%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            +C+I V KGRVLIGCLDETC+L+YGQVYI++T   +E    +  F    D ++A++VGKV
Sbjct: 447  RCKIHVQKGRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKV 506

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
             +TKNPCLHPGD+RVL+AVYD GLD  GL+DC+VFPQ+G+RPHPNECSGGDLDGDL+FI+
Sbjct: 507  AITKNPCLHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFIT 566

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WD+KLIP +   PMDYT  RPR+MDH VTLEEIQK F+ YMINDTLG ISTAHLI+AD +
Sbjct: 567  WDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRD 626

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KARS +C++LA LHSMAVDFAKTGAPAEMP  LRP+ FPDFMERWE+PMY+S GV+GK
Sbjct: 627  PLKARSPECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGK 686

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYRAA  H  D  +E+++P       YD DL+V GFD FL +AEE Y  Y+E+L  LM Y
Sbjct: 687  LYRAALRHEED--AEALLPAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAERLGALMTY 744

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            + AE EDEILTGN+RNK +YL++D KRY EMKDR++  + +L  EV GW + +C E D+S
Sbjct: 745  YSAEREDEILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLR-ACKEDDAS 803

Query: 1083 RMASAWYHVTYHPDYHPETRFISFPWILCDVLLRIKASK 1199
            R+ASAWYHVTYHPD   E RF SFPWI+CD LL IKA++
Sbjct: 804  RVASAWYHVTYHPDRRGEKRFWSFPWIICDTLLAIKAAR 842


>ref|XP_008453109.1| PREDICTED: RNA-dependent RNA polymerase 2 [Cucumis melo]
          Length = 1117

 Score =  555 bits (1429), Expect = 0.0
 Identities = 261/401 (65%), Positives = 319/401 (79%), Gaps = 1/401 (0%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            +CRIFVPKGR+L+GCLDET  L+YGQVY  +T+ K EL   +  +    DE  +I++GKV
Sbjct: 712  RCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQNRNQNYFHTIDETKSILIGKV 771

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
            +VTKNPCLHPGD+RVL+A++   L++ GLVDC++FPQKG RPH NECSGGDLDGDLYFIS
Sbjct: 772  VVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGPRPHTNECSGGDLDGDLYFIS 831

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WDE LIPP+T  PMDYT RRPR+MDHDVTLEEIQKFF+DYMINDTLG ISTAHL++AD E
Sbjct: 832  WDENLIPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADRE 891

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KA S+KCLELA LHSMAVDFAKTGAPAEMPRVL+P+ FPDFMER++KPMYIS+ V+GK
Sbjct: 892  PKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGK 951

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYRAA        S  +  E  +   YD+DL+V+GF+AFL  AE Y   Y EK+S+LMNY
Sbjct: 952  LYRAAIKSIEQERSRLVWSEEAARAIYDHDLEVDGFEAFLEIAETYKEMYIEKMSILMNY 1011

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            +GAE+EDEIL G+LR+++ YLQ+D ++YG+MKDR+L+ ++SL+KEV  WF+ SCD     
Sbjct: 1012 YGAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKSLRKEVKEWFENSCDPHQRR 1071

Query: 1083 RMASAWYHVTYHPDYHPETRF-ISFPWILCDVLLRIKASKS 1202
             MASAWYHVTYHP Y  E  F  SFPW + DVLL IKA+ S
Sbjct: 1072 MMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKATNS 1112


>ref|XP_015581229.1| PREDICTED: RNA-dependent RNA polymerase 2 isoform X2 [Ricinus
            communis]
          Length = 930

 Score =  549 bits (1414), Expect = 0.0
 Identities = 263/403 (65%), Positives = 319/403 (79%), Gaps = 1/403 (0%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            +CRIFVPKGR+LIGCLDET  LDYGQVY+++TM K EL   D       DE +A+V GKV
Sbjct: 509  RCRIFVPKGRILIGCLDETRILDYGQVYVRITMTKAELQDADQASFHRVDETTAVVTGKV 568

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
            IVTKNPCLHPGDIRVL+AVY+  L++ GLVDCI+FPQKG+RPHPNECSGGDLDGD +FIS
Sbjct: 569  IVTKNPCLHPGDIRVLEAVYEVELEEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFIS 628

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WD+ LIP ET +PMDY  RRPR MDHDVTLEEIQKFFIDYMINDTLG ISTAHL++AD E
Sbjct: 629  WDKGLIPGETESPMDYQGRRPRKMDHDVTLEEIQKFFIDYMINDTLGAISTAHLVHADRE 688

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KARSSKCL+LA LHSMAVDFAKTGAPAEMP+ L+PK FPDFMER +K MYIS GV+GK
Sbjct: 689  PDKARSSKCLQLAELHSMAVDFAKTGAPAEMPKALKPKEFPDFMERIDKKMYISGGVLGK 748

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYR     +  + S+ +  E  +  TYD+DL+V+GF+ F+  A  + + Y EKLS LM+Y
Sbjct: 749  LYRGTLDSTRQQRSKFVWTENIAEATYDHDLEVKGFEEFVEIAISHKDMYVEKLSGLMDY 808

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            + A+ EDEILTGNL+NK+MYLQ+D +RYG+ KDR+LI ++SLQKE   WF+  C  ++  
Sbjct: 809  YEAKKEDEILTGNLQNKAMYLQRDNRRYGDTKDRILISVKSLQKEAKEWFESCCQAKEKQ 868

Query: 1083 RMASAWYHVTYHPDYHPE-TRFISFPWILCDVLLRIKASKSND 1208
            R+ASAWYHVTYHP Y  E    +SFPWI+ D+LL IK++ S +
Sbjct: 869  RLASAWYHVTYHPSYFQEGITCLSFPWIVADILLNIKSANSKN 911


>gb|POF03118.1| rna-dependent rna polymerase 2 [Quercus suber]
          Length = 409

 Score =  530 bits (1364), Expect = 0.0
 Identities = 250/388 (64%), Positives = 305/388 (78%), Gaps = 1/388 (0%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            +CRIFVP GR+L+GCLDET  L+YGQVY+++TM K EL  ED  F +  DE + IVVGKV
Sbjct: 10   RCRIFVPNGRILVGCLDETGILNYGQVYVRITMSKAELQSEDQSFFQKVDETTCIVVGKV 69

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
            +VTKNP LHPGDIRVL+A+Y+  L++ GLVDC++FPQ G+RPHPN+CSGGDLDGDLYFIS
Sbjct: 70   VVTKNPWLHPGDIRVLEAIYEVELEEKGLVDCLIFPQNGQRPHPNDCSGGDLDGDLYFIS 129

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WD+ LIP +T  PMDYT RRPR+MDHDVTLEEIQKFF+DYMINDTLG ISTAHL++AD E
Sbjct: 130  WDKDLIPHQTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADCE 189

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KARS+KCLELANLHSMAVDFAKTGAPAEMPRVL+PK FPDFMER EKPMY S  V+GK
Sbjct: 190  PDKARSNKCLELANLHSMAVDFAKTGAPAEMPRVLKPKEFPDFMERVEKPMYTSNNVLGK 249

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYRA    +       +  E  S  TYD DL+V+GF+AFL  AE++ +QY EK++ LM Y
Sbjct: 250  LYRATVESTVKVRPNLVQLEKLSKETYDNDLEVDGFEAFLEIAEKHKDQYIEKMTSLMKY 309

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            + AE EDE+LTGNLR ++ Y   D +RYG+ +DR+L+ ++ LQ E   WF+ SC   +  
Sbjct: 310  YEAETEDEMLTGNLRKRAAYFLHDNRRYGDFRDRILLSMKRLQNEAKEWFEMSCKPHECQ 369

Query: 1083 RMASAWYHVTYHPDYH-PETRFISFPWI 1163
            +MASAWYHVTYHP Y+  +   +SFPWI
Sbjct: 370  QMASAWYHVTYHPTYYRDDFNCLSFPWI 397


>gb|ONM16854.1| mediator of paramutation1 [Zea mays]
          Length = 950

 Score =  548 bits (1412), Expect = 0.0
 Identities = 258/399 (64%), Positives = 316/399 (79%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            +C+I V KGRVLIGCLDETC+L+YGQVYI++T   +E    +  F    D ++A++VGKV
Sbjct: 537  RCKIHVQKGRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKV 596

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
             +TKNPCLHPGD+RVL+AVYD GLD  GL+DC+VFPQ+G+RPHPNECSGGDLDGDL+FI+
Sbjct: 597  AITKNPCLHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFIT 656

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WD+KLIP +   PMDYT  RPR+MDH VTLEEIQK F+ YMINDTLG ISTAHLI+AD +
Sbjct: 657  WDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRD 716

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KARS +C++LA LHSMAVDFAKTGAPAEMP  LRP+ FPDFMERWE+PMY+S GV+GK
Sbjct: 717  PLKARSPECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGK 776

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYRAA  H  D  +E+++P       YD DL+V GFD FL +AEE Y  Y+E+L  LM Y
Sbjct: 777  LYRAALRHEED--AEALLPAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAERLGALMTY 834

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            + AE EDEILTGN+RNK +YL++D KRY EMKDR++  + +L  EV GW + +C E D+S
Sbjct: 835  YSAEREDEILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLR-ACKEDDAS 893

Query: 1083 RMASAWYHVTYHPDYHPETRFISFPWILCDVLLRIKASK 1199
            R+ASAWYHVTYHPD   E RF SFPWI+CD LL IKA++
Sbjct: 894  RVASAWYHVTYHPDRRGEKRFWSFPWIICDTLLAIKAAR 932


>ref|XP_002511431.1| PREDICTED: RNA-dependent RNA polymerase 2 isoform X1 [Ricinus
            communis]
 gb|EEF52033.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
          Length = 983

 Score =  549 bits (1414), Expect = 0.0
 Identities = 263/403 (65%), Positives = 319/403 (79%), Gaps = 1/403 (0%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            +CRIFVPKGR+LIGCLDET  LDYGQVY+++TM K EL   D       DE +A+V GKV
Sbjct: 562  RCRIFVPKGRILIGCLDETRILDYGQVYVRITMTKAELQDADQASFHRVDETTAVVTGKV 621

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
            IVTKNPCLHPGDIRVL+AVY+  L++ GLVDCI+FPQKG+RPHPNECSGGDLDGD +FIS
Sbjct: 622  IVTKNPCLHPGDIRVLEAVYEVELEEKGLVDCILFPQKGERPHPNECSGGDLDGDQFFIS 681

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WD+ LIP ET +PMDY  RRPR MDHDVTLEEIQKFFIDYMINDTLG ISTAHL++AD E
Sbjct: 682  WDKGLIPGETESPMDYQGRRPRKMDHDVTLEEIQKFFIDYMINDTLGAISTAHLVHADRE 741

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KARSSKCL+LA LHSMAVDFAKTGAPAEMP+ L+PK FPDFMER +K MYIS GV+GK
Sbjct: 742  PDKARSSKCLQLAELHSMAVDFAKTGAPAEMPKALKPKEFPDFMERIDKKMYISGGVLGK 801

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYR     +  + S+ +  E  +  TYD+DL+V+GF+ F+  A  + + Y EKLS LM+Y
Sbjct: 802  LYRGTLDSTRQQRSKFVWTENIAEATYDHDLEVKGFEEFVEIAISHKDMYVEKLSGLMDY 861

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            + A+ EDEILTGNL+NK+MYLQ+D +RYG+ KDR+LI ++SLQKE   WF+  C  ++  
Sbjct: 862  YEAKKEDEILTGNLQNKAMYLQRDNRRYGDTKDRILISVKSLQKEAKEWFESCCQAKEKQ 921

Query: 1083 RMASAWYHVTYHPDYHPE-TRFISFPWILCDVLLRIKASKSND 1208
            R+ASAWYHVTYHP Y  E    +SFPWI+ D+LL IK++ S +
Sbjct: 922  RLASAWYHVTYHPSYFQEGITCLSFPWIVADILLNIKSANSKN 964


>gb|ONM16859.1| mediator of paramutation1 [Zea mays]
          Length = 985

 Score =  548 bits (1412), Expect = 0.0
 Identities = 258/399 (64%), Positives = 316/399 (79%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            +C+I V KGRVLIGCLDETC+L+YGQVYI++T   +E    +  F    D ++A++VGKV
Sbjct: 572  RCKIHVQKGRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKV 631

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
             +TKNPCLHPGD+RVL+AVYD GLD  GL+DC+VFPQ+G+RPHPNECSGGDLDGDL+FI+
Sbjct: 632  AITKNPCLHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFIT 691

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WD+KLIP +   PMDYT  RPR+MDH VTLEEIQK F+ YMINDTLG ISTAHLI+AD +
Sbjct: 692  WDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRD 751

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KARS +C++LA LHSMAVDFAKTGAPAEMP  LRP+ FPDFMERWE+PMY+S GV+GK
Sbjct: 752  PLKARSPECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGK 811

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYRAA  H  D  +E+++P       YD DL+V GFD FL +AEE Y  Y+E+L  LM Y
Sbjct: 812  LYRAALRHEED--AEALLPAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAERLGALMTY 869

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            + AE EDEILTGN+RNK +YL++D KRY EMKDR++  + +L  EV GW + +C E D+S
Sbjct: 870  YSAEREDEILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLR-ACKEDDAS 928

Query: 1083 RMASAWYHVTYHPDYHPETRFISFPWILCDVLLRIKASK 1199
            R+ASAWYHVTYHPD   E RF SFPWI+CD LL IKA++
Sbjct: 929  RVASAWYHVTYHPDRRGEKRFWSFPWIICDTLLAIKAAR 967


>gb|OVA03721.1| RNA recognition motif domain [Macleaya cordata]
          Length = 1117

 Score =  551 bits (1420), Expect = 0.0
 Identities = 263/405 (64%), Positives = 326/405 (80%), Gaps = 2/405 (0%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKED-HCFLKIADERSAIVVGK 179
            KCRIFV K RVL+GCLDET  L+YGQV+I+VTM + EL   D   F +  D++++IVVGK
Sbjct: 712  KCRIFVSKARVLMGCLDETATLNYGQVFIRVTMTRAELQCGDAQTFFQKVDDKTSIVVGK 771

Query: 180  VIVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFI 359
            V+VTKNPCLHPGDIRVL+AVY+  L++ GLVDC+VFPQKG+RPHPNECSGGDLDGDL+F+
Sbjct: 772  VVVTKNPCLHPGDIRVLEAVYEPALEEKGLVDCLVFPQKGERPHPNECSGGDLDGDLFFV 831

Query: 360  SWDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADS 539
             WD+ LIP ++ TPMDY  RRPRLMDHDVTLEEIQKFF+DYMINDTLG+ISTAHL++AD 
Sbjct: 832  CWDDNLIPLQSDTPMDYIARRPRLMDHDVTLEEIQKFFVDYMINDTLGMISTAHLVHADC 891

Query: 540  EPTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIG 719
            EP KARSSKC +LA LHSMAVDFAKTGAPAEMPRVLRPK +PDFMER ++ MYIS+GV+G
Sbjct: 892  EPEKARSSKCRQLATLHSMAVDFAKTGAPAEMPRVLRPKEYPDFMEREDRAMYISSGVLG 951

Query: 720  KLYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMN 899
            KLYRA      + +   I  E+ +   YD DL+V GF+AFL +AE + N Y EK S LMN
Sbjct: 952  KLYRATIEWKENHDPNIIQSEIVAQVAYDDDLEVNGFEAFLETAENHKNMYVEKFSALMN 1011

Query: 900  YFGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDS 1079
            Y+GAE E+E+LTGNLR  S+YLQ+DK+RY EMKDR+L  ++SLQKE  GWF  SC + ++
Sbjct: 1012 YYGAECEEEMLTGNLRELSVYLQRDKRRYTEMKDRILDSIKSLQKEAKGWFHSSCKDHEN 1071

Query: 1080 SRMASAWYHVTYHPDYHPETR-FISFPWILCDVLLRIKASKSNDQ 1211
            ++MASAWYHVTYHP +    + ++SFPWI+ D+LL IK+ +S  +
Sbjct: 1072 TKMASAWYHVTYHPKFCQNGKNYLSFPWIVGDILLNIKSIRSRSK 1116


>ref|NP_001267608.1| RNA-dependent RNA polymerase 2-like [Cucumis sativus]
 gb|ADU77018.1| RNA-dependent RNA polymerase 2 [Cucumis sativus]
 gb|KGN63597.1| hypothetical protein Csa_1G005580 [Cucumis sativus]
          Length = 1117

 Score =  551 bits (1420), Expect = 0.0
 Identities = 260/401 (64%), Positives = 318/401 (79%), Gaps = 1/401 (0%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            +CRIFVPKGR+L+GCLDET  L+YGQVY  +T+ K EL   +  +    DE  +I++GKV
Sbjct: 712  RCRIFVPKGRILLGCLDETGILNYGQVYACITLTKSELQSRNQNYFHTIDETKSILLGKV 771

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
            +VTKNPCLHPGD+RVL+A++   L++ GLVDC++FPQKG RPH NECSGGDLDGDLYFIS
Sbjct: 772  VVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGARPHTNECSGGDLDGDLYFIS 831

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WDE LIPP+T  PMDYT RRPR+MDHDV LEEIQKFF+DYMINDTLG ISTAHL++AD E
Sbjct: 832  WDENLIPPKTEAPMDYTGRRPRIMDHDVKLEEIQKFFVDYMINDTLGAISTAHLVHADRE 891

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KA S+KCLELA LHSMAVDFAKTGAPAEMPRVL+P+ FPDFMER++KPMYIS+ V+GK
Sbjct: 892  PKKALSAKCLELAALHSMAVDFAKTGAPAEMPRVLKPREFPDFMERFDKPMYISSNVLGK 951

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYRAA        S  +  E  +   YDYDL+V+GF+AFL  AE Y   Y EK+S+LMNY
Sbjct: 952  LYRAAVKSIEQERSRLVWSEEAARAIYDYDLEVDGFEAFLEIAETYKEMYIEKMSILMNY 1011

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            +GAE+EDEIL G+LR+++ YLQ+D ++YG+MKDR+L+ +++L+KEV  WF+ SCD  +  
Sbjct: 1012 YGAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKNLRKEVKEWFENSCDPLNRR 1071

Query: 1083 RMASAWYHVTYHPDYHPETRF-ISFPWILCDVLLRIKASKS 1202
             MASAWYHVTYHP Y  E  F  SFPW + DVLL IKA  S
Sbjct: 1072 MMASAWYHVTYHPSYFKEDMFYFSFPWAVSDVLLNIKAMNS 1112


>ref|XP_010271987.1| PREDICTED: RNA-dependent RNA polymerase 2 [Nelumbo nucifera]
          Length = 1115

 Score =  550 bits (1416), Expect = 0.0
 Identities = 260/400 (65%), Positives = 320/400 (80%), Gaps = 1/400 (0%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            KCRI VPKGRVL+GCLDET  L+YGQV+I+VTM K E   +D  F    DE ++IV+GKV
Sbjct: 712  KCRILVPKGRVLLGCLDETGILNYGQVFIRVTMTKAEQCHDDQSFFHQVDETTSIVIGKV 771

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
            ++TKNPCLHPGDIRVL A+Y+S L++ GLVDC+VFPQKG+RPHPNECSGGDLDGDL+F+ 
Sbjct: 772  VITKNPCLHPGDIRVLDAIYESALEEKGLVDCLVFPQKGERPHPNECSGGDLDGDLFFVC 831

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WDE LIP +T TPMDY  RR RLMDH+VTLEEIQK+F++YMINDTLG+ISTAH+I+AD E
Sbjct: 832  WDENLIPSQTDTPMDYIGRRSRLMDHEVTLEEIQKYFVNYMINDTLGVISTAHVIHADRE 891

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P+KARS KCL+LA LHSMAVDFAKTGAPAEMPRVL+PK +PDFMER ++PMY S G++GK
Sbjct: 892  PSKARSPKCLQLAALHSMAVDFAKTGAPAEMPRVLKPKEYPDFMERGDRPMYASPGILGK 951

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYR+    + ++  + +  E  +   YD DL+V GF++F+ +AE +   Y+EKLS LMNY
Sbjct: 952  LYRSTIDSTKNQEPDFVWNEEVAQAAYDKDLEVRGFESFVETAESHKKLYTEKLSTLMNY 1011

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            +GA  EDEILTGNLR+ S+ LQ+DK RYGEMKDR+LI +R+LQKE  GWF  SC   +  
Sbjct: 1012 YGARSEDEILTGNLRSPSLCLQRDKIRYGEMKDRVLIAVRNLQKEAKGWFHSSCKSHECH 1071

Query: 1083 RMASAWYHVTYHPDY-HPETRFISFPWILCDVLLRIKASK 1199
            +MASAWYHVTYHP Y H     +SFPWIL D+LL IK+ K
Sbjct: 1072 KMASAWYHVTYHPKYCHNGMNSLSFPWILDDILLNIKSVK 1111


>ref|XP_008668575.1| RNA-dependent DNA polymerase isoform X1 [Zea mays]
 gb|ONM16853.1| mediator of paramutation1 [Zea mays]
          Length = 1091

 Score =  548 bits (1412), Expect = 0.0
 Identities = 258/399 (64%), Positives = 316/399 (79%)
 Frame = +3

Query: 3    KCRIFVPKGRVLIGCLDETCELDYGQVYIKVTMRKEELDKEDHCFLKIADERSAIVVGKV 182
            +C+I V KGRVLIGCLDETC+L+YGQVYI++T   +E    +  F    D ++A++VGKV
Sbjct: 678  RCKIHVQKGRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIVGKV 737

Query: 183  IVTKNPCLHPGDIRVLQAVYDSGLDDMGLVDCIVFPQKGKRPHPNECSGGDLDGDLYFIS 362
             +TKNPCLHPGD+RVL+AVYD GLD  GL+DC+VFPQ+G+RPHPNECSGGDLDGDL+FI+
Sbjct: 738  AITKNPCLHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGERPHPNECSGGDLDGDLFFIT 797

Query: 363  WDEKLIPPETVTPMDYTPRRPRLMDHDVTLEEIQKFFIDYMINDTLGIISTAHLIYADSE 542
            WD+KLIP +   PMDYT  RPR+MDH VTLEEIQK F+ YMINDTLG ISTAHLI+AD +
Sbjct: 798  WDDKLIPEKVDAPMDYTATRPRIMDHAVTLEEIQKHFVSYMINDTLGAISTAHLIHADRD 857

Query: 543  PTKARSSKCLELANLHSMAVDFAKTGAPAEMPRVLRPKVFPDFMERWEKPMYISTGVIGK 722
            P KARS +C++LA LHSMAVDFAKTGAPAEMP  LRP+ FPDFMERWE+PMY+S GV+GK
Sbjct: 858  PLKARSPECVQLAALHSMAVDFAKTGAPAEMPLALRPREFPDFMERWERPMYVSNGVLGK 917

Query: 723  LYRAARSHSGDRNSESIIPEVYSHYTYDYDLQVEGFDAFLGSAEEYYNQYSEKLSLLMNY 902
            LYRAA  H  D  +E+++P       YD DL+V GFD FL +AEE Y  Y+E+L  LM Y
Sbjct: 918  LYRAALRHEED--AEALLPAGPPSCVYDPDLEVAGFDEFLDAAEERYEAYAERLGALMTY 975

Query: 903  FGAEHEDEILTGNLRNKSMYLQKDKKRYGEMKDRMLIGLRSLQKEVVGWFKCSCDERDSS 1082
            + AE EDEILTGN+RNK +YL++D KRY EMKDR++  + +L  EV GW + +C E D+S
Sbjct: 976  YSAEREDEILTGNIRNKLVYLRRDNKRYFEMKDRIIAAVDALHAEVRGWLR-ACKEDDAS 1034

Query: 1083 RMASAWYHVTYHPDYHPETRFISFPWILCDVLLRIKASK 1199
            R+ASAWYHVTYHPD   E RF SFPWI+CD LL IKA++
Sbjct: 1035 RVASAWYHVTYHPDRRGEKRFWSFPWIICDTLLAIKAAR 1073