BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00043163
         (735 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|KYP40054.1| Retrovirus-related Pol polyprotein from transposo...   361   e-118
gb|KYP57192.1| Retrovirus-related Pol polyprotein from transposo...   350   e-118
gb|KYP65984.1| Retrovirus-related Pol polyprotein from transposo...   361   e-117
gb|KYP65681.1| Retrovirus-related Pol polyprotein from transposo...   342   e-114
gb|KYP36562.1| Retrovirus-related Pol polyprotein from transposo...   350   e-111
gb|PRQ52817.1| putative RNA-directed DNA polymerase [Rosa chinen...   328   e-107
gb|KYP58075.1| Retrovirus-related Pol polyprotein from transposo...   327   e-106
gb|KYP66638.1| Retrovirus-related Pol polyprotein from transposo...   313   e-101
emb|CAN69396.1| hypothetical protein VITISV_021034 [Vitis vinifera]   328   e-100
gb|OMO59932.1| reverse transcriptase [Corchorus capsularis]           326   4e-99
gb|ABW74556.1| copia-like pol polyprotein [Boechera divaricarpa]      315   4e-98
emb|CAN81845.1| hypothetical protein VITISV_037891 [Vitis vinifera]   311   1e-97
gb|PNX75408.1| putative retrotransposon Ty1-copia subclass prote...   311   3e-97
dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Gl...   317   1e-96
gb|KYP56010.1| Retrovirus-related Pol polyprotein from transposo...   291   5e-96
gb|KYP42882.1| Retrovirus-related Pol polyprotein from transposo...   287   1e-95
emb|CAN71183.1| hypothetical protein VITISV_033416 [Vitis vinifera]   314   1e-95
gb|KYP30896.1| Retrovirus-related Pol polyprotein from transposo...   288   9e-95
gb|KYP41883.1| Retrovirus-related Pol polyprotein from transposo...   286   2e-93
emb|CAN83951.1| hypothetical protein VITISV_043907 [Vitis vinifera]   299   2e-93

>gb|KYP40054.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 680

 Score =  361 bits (927), Expect = e-118
 Identities = 176/240 (73%), Positives = 197/240 (82%)
 Frame = +2

Query: 11   VQNDAEQHLNEDVPHEEPNLRPADISEPQGIALNRPIRIRRSAIPNDYVVYLHESEFDCG 190
            + N  EQ  N+ + H E  +    + EPQ IAL R  R RRSAIPNDYVVYL ESE D G
Sbjct: 321  INNHEEQQTNDPITHNEVEVNEPIVEEPQQIALRRSQRERRSAIPNDYVVYLQESENDLG 380

Query: 191  IYKDPVSFSQAIESKESDKWLNAMKDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKHN 370
            I  DPV+FSQAI    ++KWL+AMK EL SM  N VWDLV+LPEGCKRVGCKWVFKTK +
Sbjct: 381  IENDPVTFSQAINGDNAEKWLDAMKAELKSMEHNRVWDLVELPEGCKRVGCKWVFKTKRD 440

Query: 371  SNGNIERYKARLVAKGYTQKNGIDYVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKTA 550
            S+GN+E YKARLVAKG+TQKNGIDY ETFSPVSKKDSLRII+ALVA +DLELHQMDVKT 
Sbjct: 441  SHGNLECYKARLVAKGFTQKNGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTV 500

Query: 551  FLNGDLKEEVYMDQPEGFTIEGKEHMVCKLKKSIYGLKQASRQWYIKFNDTITSFGFQEN 730
            FLNGDL+E+VYMDQP GF  +GKEHMVCKLKKSIYGLKQASRQWY+KFNDTI SFGF+EN
Sbjct: 501  FLNGDLEEDVYMDQPMGFINKGKEHMVCKLKKSIYGLKQASRQWYLKFNDTIMSFGFKEN 560


>gb|KYP57192.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 360

 Score =  350 bits (897), Expect = e-118
 Identities = 173/239 (72%), Positives = 198/239 (82%), Gaps = 1/239 (0%)
 Frame = +2

Query: 17  NDAEQHLNEDVPHEEPNLRPADISEPQGIALNRPIRIRRSAIPNDYVVYLHESEFDCGIY 196
           N+ EQH NE + H EP      + +PQ IAL R  R +R AI NDY+VYLHE E D  I 
Sbjct: 123 NEEEQHNNEPMIHNEPI-----VEQPQEIALRRSQREKRPAISNDYMVYLHELETDSSIN 177

Query: 197 K-DPVSFSQAIESKESDKWLNAMKDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKHNS 373
           + DPVSFSQA+    S+KWLNAMK+EL SM QN+VWDLV+LPEGCKRVGCKWVFKTK +S
Sbjct: 178 ENDPVSFSQAVSCDNSEKWLNAMKEELKSMEQNDVWDLVELPEGCKRVGCKWVFKTKRDS 237

Query: 374 NGNIERYKARLVAKGYTQKNGIDYVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKTAF 553
           +GN+ERYKARLVAKG+TQK+GIDY ETFSPVS+KDS RII+ LVA +DLELHQMDVKTAF
Sbjct: 238 DGNLERYKARLVAKGFTQKDGIDYKETFSPVSRKDSFRIIMELVAHYDLELHQMDVKTAF 297

Query: 554 LNGDLKEEVYMDQPEGFTIEGKEHMVCKLKKSIYGLKQASRQWYIKFNDTITSFGFQEN 730
           LNG+L+E VYMDQP GF++EGKEHMVCKLKKSIYGLKQAS QWY+KFNDTI SFGF EN
Sbjct: 298 LNGNLEENVYMDQPMGFSVEGKEHMVCKLKKSIYGLKQASCQWYLKFNDTIISFGFIEN 356


>gb|KYP65984.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 789

 Score =  361 bits (927), Expect = e-117
 Identities = 176/240 (73%), Positives = 197/240 (82%)
 Frame = +2

Query: 11   VQNDAEQHLNEDVPHEEPNLRPADISEPQGIALNRPIRIRRSAIPNDYVVYLHESEFDCG 190
            + N  EQ  N+ + H E  +    + EPQ IAL R  R RRSAIPNDYVVYL ESE D G
Sbjct: 460  INNHEEQQTNDPITHNEVEVNEPIVEEPQQIALRRSQRERRSAIPNDYVVYLQESENDLG 519

Query: 191  IYKDPVSFSQAIESKESDKWLNAMKDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKHN 370
            I  DPV+FSQAI    ++KWL+AMK EL SM  N VWD V+LPEGCKRVGCKWVFKTK +
Sbjct: 520  IENDPVTFSQAINGDNAEKWLDAMKAELKSMEHNRVWDFVELPEGCKRVGCKWVFKTKRD 579

Query: 371  SNGNIERYKARLVAKGYTQKNGIDYVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKTA 550
            S+GN+E YKARLVAKG+TQKNGIDY ETFSPVSKKDSLRII+ALVA +DLELHQMDVKTA
Sbjct: 580  SHGNLECYKARLVAKGFTQKNGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTA 639

Query: 551  FLNGDLKEEVYMDQPEGFTIEGKEHMVCKLKKSIYGLKQASRQWYIKFNDTITSFGFQEN 730
            FLNGDL+E+VYMDQP GF  +GKEHMVCKLKKSIYGLKQASRQWY+KFNDTI SFGF+EN
Sbjct: 640  FLNGDLEEDVYMDQPMGFINKGKEHMVCKLKKSIYGLKQASRQWYLKFNDTIMSFGFKEN 699


>gb|KYP65681.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 394

 Score =  342 bits (876), Expect = e-114
 Identities = 171/239 (71%), Positives = 195/239 (81%)
 Frame = +2

Query: 17  NDAEQHLNEDVPHEEPNLRPADISEPQGIALNRPIRIRRSAIPNDYVVYLHESEFDCGIY 196
           N  EQ +N+ V + EP      + +PQ I L R  R +RSAI NDY+VYL ESE D  I 
Sbjct: 28  NQEEQQINDPVINNEPV-----VEQPQEIVLRRSQREKRSAISNDYLVYLQESENDLSID 82

Query: 197 KDPVSFSQAIESKESDKWLNAMKDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKHNSN 376
            DPVSFS+AI    S+KWL+AM DEL SMAQN+VWDLV+LPEG KRV CKWVFKTK +S+
Sbjct: 83  NDPVSFSEAINGDNSEKWLDAMNDELKSMAQNDVWDLVELPEGSKRVECKWVFKTKRDSH 142

Query: 377 GNIERYKARLVAKGYTQKNGIDYVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKTAFL 556
           GNIER+KARLVAKG+TQK+ IDY ETFSPVSKKDS RII+ALVA +DLELHQMD+KTAFL
Sbjct: 143 GNIERHKARLVAKGFTQKDDIDYKETFSPVSKKDSFRIIMALVAHYDLELHQMDIKTAFL 202

Query: 557 NGDLKEEVYMDQPEGFTIEGKEHMVCKLKKSIYGLKQASRQWYIKFNDTITSFGFQENT 733
           NG+L+E VYMDQP GF  EGKEHMVCKLKKSIYGLKQASRQWYIKF+DTI SFGF+ENT
Sbjct: 203 NGNLEENVYMDQPVGFIEEGKEHMVCKLKKSIYGLKQASRQWYIKFSDTIMSFGFKENT 261


>gb|KYP36562.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 936

 Score =  350 bits (897), Expect = e-111
 Identities = 173/239 (72%), Positives = 199/239 (83%), Gaps = 1/239 (0%)
 Frame = +2

Query: 17   NDAEQHLNEDVPHEEPNLRPADISEPQGIALNRPIRIRRSAIPNDYVVYLHESEFDCGIY 196
            N+ EQH NE + H EP      + +PQ IAL R  R +R AI NDY+VYLHE E D  I 
Sbjct: 699  NEEEQHNNEPMIHNEPI-----VEQPQEIALRRSQREKRPAISNDYMVYLHELENDSSIN 753

Query: 197  K-DPVSFSQAIESKESDKWLNAMKDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKHNS 373
            + DPVSFSQA+    S+KWLNAMK+EL SM QN+VWDLV+LPEGCKRVGCKWVFKTK +S
Sbjct: 754  ENDPVSFSQAVSCDNSEKWLNAMKEELKSMEQNDVWDLVELPEGCKRVGCKWVFKTKRDS 813

Query: 374  NGNIERYKARLVAKGYTQKNGIDYVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKTAF 553
            +GN+ERYKARLVAKG+TQK+GIDY ETFSPVS+KDS RII+ALVA +DLELHQ+DVKTAF
Sbjct: 814  DGNLERYKARLVAKGFTQKDGIDYKETFSPVSRKDSFRIIMALVAHYDLELHQIDVKTAF 873

Query: 554  LNGDLKEEVYMDQPEGFTIEGKEHMVCKLKKSIYGLKQASRQWYIKFNDTITSFGFQEN 730
            LNG+L+E VYMDQP  F++EGKEHMVCKLKKSIYGLKQASRQWY+KFNDTI SFGF EN
Sbjct: 874  LNGNLEENVYMDQPMEFSVEGKEHMVCKLKKSIYGLKQASRQWYLKFNDTIISFGFIEN 932


>gb|PRQ52817.1| putative RNA-directed DNA polymerase [Rosa chinensis]
          Length = 538

 Score =  328 bits (841), Expect = e-107
 Identities = 155/192 (80%), Positives = 176/192 (91%)
 Frame = +2

Query: 155 VVYLHESEFDCGIYKDPVSFSQAIESKESDKWLNAMKDELNSMAQNNVWDLVDLPEGCKR 334
           +VYL ESEFD G  KDPVS+SQAI+ + S+KW++AM DEL SM QN VW+LV+LPEGCKR
Sbjct: 1   MVYLQESEFDIGSSKDPVSYSQAIQCENSEKWIDAMNDELKSMDQNKVWELVELPEGCKR 60

Query: 335 VGCKWVFKTKHNSNGNIERYKARLVAKGYTQKNGIDYVETFSPVSKKDSLRIIIALVAQF 514
           VGCKWVFKTK +SNGNIERYKARLVAKG+TQK GIDY ETFSPVSKKDSLRII+ALVA F
Sbjct: 61  VGCKWVFKTKRDSNGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIIMALVAHF 120

Query: 515 DLELHQMDVKTAFLNGDLKEEVYMDQPEGFTIEGKEHMVCKLKKSIYGLKQASRQWYIKF 694
           DLELHQMDVKTAFLNG+L+EEV+M+QPEGF+ +GKEHMVCKLKKSIYGLKQASRQWY+KF
Sbjct: 121 DLELHQMDVKTAFLNGNLEEEVFMNQPEGFSSKGKEHMVCKLKKSIYGLKQASRQWYLKF 180

Query: 695 NDTITSFGFQEN 730
           NDT+ SFGF+EN
Sbjct: 181 NDTVVSFGFKEN 192


>gb|KYP58075.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 519

 Score =  327 bits (837), Expect = e-106
 Identities = 155/199 (77%), Positives = 178/199 (89%), Gaps = 1/199 (0%)
 Frame = +2

Query: 137 AIPNDYVVYLHESEFDCGIYK-DPVSFSQAIESKESDKWLNAMKDELNSMAQNNVWDLVD 313
           AI NDY+VY+HE E D  I + DPVSFSQA+    S+KWLNAMK+EL  M QN+VWDLV+
Sbjct: 161 AISNDYMVYVHELEIDSSINENDPVSFSQAVSCDNSEKWLNAMKEELKFMEQNDVWDLVE 220

Query: 314 LPEGCKRVGCKWVFKTKHNSNGNIERYKARLVAKGYTQKNGIDYVETFSPVSKKDSLRII 493
           LPEGCKRVGCKWVFKTK +S+GN+ERYKARLVAKG+T+K+GIDY ETFSPVS+KDS RII
Sbjct: 221 LPEGCKRVGCKWVFKTKRDSDGNLERYKARLVAKGFTKKDGIDYKETFSPVSRKDSFRII 280

Query: 494 IALVAQFDLELHQMDVKTAFLNGDLKEEVYMDQPEGFTIEGKEHMVCKLKKSIYGLKQAS 673
           +ALVA +DLELHQMDVKTAFLNG+L+E VYMDQP GF++EGKEHMVCKLKKSIYGLKQAS
Sbjct: 281 MALVAHYDLELHQMDVKTAFLNGNLEENVYMDQPMGFSVEGKEHMVCKLKKSIYGLKQAS 340

Query: 674 RQWYIKFNDTITSFGFQEN 730
           RQWY+KFNDTI SFGF+EN
Sbjct: 341 RQWYLKFNDTIVSFGFKEN 359


>gb|KYP66638.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 550

 Score =  313 bits (801), Expect = e-101
 Identities = 154/221 (69%), Positives = 177/221 (80%)
 Frame = +2

Query: 11  VQNDAEQHLNEDVPHEEPNLRPADISEPQGIALNRPIRIRRSAIPNDYVVYLHESEFDCG 190
           + N  EQ  N+ + H E  +    + EPQ IAL R  R RRSAIPNDYV+YL ESE D G
Sbjct: 330 INNHEEQQTNDPITHNEVEVNEPIVEEPQQIALRRSQRERRSAIPNDYVIYLQESENDLG 389

Query: 191 IYKDPVSFSQAIESKESDKWLNAMKDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKHN 370
           I  D V+FSQA+    ++KWL+AMK EL SM  N VWD V+LPEGCKRVGCKWVFKTK +
Sbjct: 390 IENDLVTFSQAMNGDNAEKWLDAMKAELKSMEHNRVWDRVELPEGCKRVGCKWVFKTKCD 449

Query: 371 SNGNIERYKARLVAKGYTQKNGIDYVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKTA 550
           S+GN+E YKA+LVAKG+TQK+GIDY ETFSPVSKKDSLRII+ALVA +DLELHQMDVKT 
Sbjct: 450 SHGNLECYKAKLVAKGFTQKDGIDYKETFSPVSKKDSLRIIMALVAHYDLELHQMDVKTV 509

Query: 551 FLNGDLKEEVYMDQPEGFTIEGKEHMVCKLKKSIYGLKQAS 673
           FLNGDL+E+VYMDQP GF  +GKEHMVCKLKKSIYGLKQAS
Sbjct: 510 FLNGDLEEDVYMDQPMGFINKGKEHMVCKLKKSIYGLKQAS 550


>emb|CAN69396.1| hypothetical protein VITISV_021034 [Vitis vinifera]
          Length = 2026

 Score =  328 bits (842), Expect = e-100
 Identities = 158/216 (73%), Positives = 181/216 (83%)
 Frame = +2

Query: 83   ISEPQGIALNRPIRIRRSAIPNDYVVYLHESEFDCGIYKDPVSFSQAIESKESDKWLNAM 262
            +  PQ   L R  R RR AI +DYVVYL ES+FD GI KDPVSFSQA+ES +S KW+ AM
Sbjct: 552  VEPPQPXPLRRSQRERRPAITDDYVVYLXESDFDIGIRKDPVSFSQAMESDDSSKWMEAM 611

Query: 263  KDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKHNSNGNIERYKARLVAKGYTQKNGID 442
             +EL SMA N VWDL++LP  CK VGCKWVFKTK ++ GNIER+KARLVAKG+TQK GID
Sbjct: 612  NEELKSMAHNGVWDLIELPNNCKPVGCKWVFKTKRDAKGNIERFKARLVAKGFTQKEGID 671

Query: 443  YVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKTAFLNGDLKEEVYMDQPEGFTIEGKE 622
            Y +TFSPVSKKDSLRII+ALVA FDLELHQMDVKTAFLNG+L E++YM+Q EGF  +G E
Sbjct: 672  YKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQXEGFAKKGNE 731

Query: 623  HMVCKLKKSIYGLKQASRQWYIKFNDTITSFGFQEN 730
            H+VCKLKKSIYGLKQASRQWYIKFN+TIT FGF+EN
Sbjct: 732  HLVCKLKKSIYGLKQASRQWYIKFNNTITYFGFKEN 767


>gb|OMO59932.1| reverse transcriptase [Corchorus capsularis]
          Length = 2144

 Score =  326 bits (836), Expect = 4e-99
 Identities = 158/217 (72%), Positives = 181/217 (83%)
 Frame = +2

Query: 83   ISEPQGIALNRPIRIRRSAIPNDYVVYLHESEFDCGIYKDPVSFSQAIESKESDKWLNAM 262
            ++EPQ +AL RP+R RR AI  D+ VY  E E D  I  DPVSF QA+E   S+KWLNAM
Sbjct: 1855 VNEPQEVALRRPVRQRRPAISQDFEVYSIEHECDLSIDDDPVSFKQAMECNNSEKWLNAM 1914

Query: 263  KDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKHNSNGNIERYKARLVAKGYTQKNGID 442
            K+EL SM  N VW+L++LPEG K+VGCKWVFKTK +S GNIERY ARL+AKGYTQK+GID
Sbjct: 1915 KEELKSMDDNKVWELIELPEGSKQVGCKWVFKTKRDSKGNIERYMARLLAKGYTQKDGID 1974

Query: 443  YVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKTAFLNGDLKEEVYMDQPEGFTIEGKE 622
            Y ETFSPVSKKDSLRI++ LVA +DLELHQMDVKTAFLNGDL+EEVYMDQPEGF+  GKE
Sbjct: 1975 YEETFSPVSKKDSLRIVMVLVAHYDLELHQMDVKTAFLNGDLEEEVYMDQPEGFSTTGKE 2034

Query: 623  HMVCKLKKSIYGLKQASRQWYIKFNDTITSFGFQENT 733
             +VCKLKKSIYGLKQASRQ Y+KFNDTI S+GF ENT
Sbjct: 2035 KLVCKLKKSIYGLKQASRQLYLKFNDTIKSYGFVENT 2071


>gb|ABW74556.1| copia-like pol polyprotein [Boechera divaricarpa]
          Length = 931

 Score =  315 bits (808), Expect = 4e-98
 Identities = 157/234 (67%), Positives = 186/234 (79%)
 Frame = +2

Query: 26   EQHLNEDVPHEEPNLRPADISEPQGIALNRPIRIRRSAIPNDYVVYLHESEFDCGIYKDP 205
            E ++NE V  +E N      SEPQ + L R IR RRSAIP+DYVVY  ESE D  + +DP
Sbjct: 467  ENNVNEPVTIQEEN------SEPQ-VNLRRSIRERRSAIPSDYVVYAIESECDLSLDEDP 519

Query: 206  VSFSQAIESKESDKWLNAMKDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKHNSNGNI 385
            +SF +A++S  S+ WL A K+E+ SM  N VWDLV+LP G + VG KW+FKTK NS GNI
Sbjct: 520  ISFQKAMKSDSSENWLIAAKEEMKSMGDNKVWDLVELPNGFRTVGSKWIFKTKRNSKGNI 579

Query: 386  ERYKARLVAKGYTQKNGIDYVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKTAFLNGD 565
            ERYKARLV KG+TQK+GIDY ETFSPVSKKDSLRI++ALVA ++LELHQMDVKTAFLNG+
Sbjct: 580  ERYKARLVVKGFTQKDGIDYKETFSPVSKKDSLRIVLALVAHYNLELHQMDVKTAFLNGE 639

Query: 566  LKEEVYMDQPEGFTIEGKEHMVCKLKKSIYGLKQASRQWYIKFNDTITSFGFQE 727
            L+EEVYMDQPEGF   G E++VCKL+KSIYGLKQASRQWY KFND ITS+GF E
Sbjct: 640  LEEEVYMDQPEGFVATGNENLVCKLRKSIYGLKQASRQWYFKFNDIITSYGFVE 693


>emb|CAN81845.1| hypothetical protein VITISV_037891 [Vitis vinifera]
          Length = 802

 Score =  311 bits (797), Expect = 1e-97
 Identities = 153/221 (69%), Positives = 177/221 (80%), Gaps = 8/221 (3%)
 Frame = +2

Query: 92  PQGIALNRPIRIRRSAIPNDYV--------VYLHESEFDCGIYKDPVSFSQAIESKESDK 247
           PQ   L R  R RR AI +DYV        VYL ES+FD  I KDPVSFSQA+E+ +S K
Sbjct: 317 PQSAPLRRSQRERRPAITDDYVLQECRRDPVYLQESDFDIRIRKDPVSFSQAMENGDSSK 376

Query: 248 WLNAMKDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKHNSNGNIERYKARLVAKGYTQ 427
           W+ AM +EL SMA N VWDL++LP  CK V CKWVFKTK ++ GNIER+KARLVAKG+TQ
Sbjct: 377 WMEAMNEELKSMAHNGVWDLIELPNSCKPVDCKWVFKTKRDAKGNIERFKARLVAKGFTQ 436

Query: 428 KNGIDYVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKTAFLNGDLKEEVYMDQPEGFT 607
           K GIDY +TFSPVSKKDSLRII+ LV  FDLELHQMDVKTAFLNG+L E++YM+QP+GF 
Sbjct: 437 KEGIDYRDTFSPVSKKDSLRIIMTLVXHFDLELHQMDVKTAFLNGNLDEDIYMEQPKGFA 496

Query: 608 IEGKEHMVCKLKKSIYGLKQASRQWYIKFNDTITSFGFQEN 730
            +G EH+VCKLKKSIYGLKQASRQWYIKFN+TITSF F+EN
Sbjct: 497 KKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFEFKEN 537


>gb|PNX75408.1| putative retrotransposon Ty1-copia subclass protein, partial
            [Trifolium pratense]
          Length = 868

 Score =  311 bits (798), Expect = 3e-97
 Identities = 154/248 (62%), Positives = 187/248 (75%), Gaps = 9/248 (3%)
 Frame = +2

Query: 14   QNDAEQHLNE--DVPHEE----PNLRPADISEPQG---IALNRPIRIRRSAIPNDYVVYL 166
            QN    H+ +  D  H+E    P + P +  +PQ    I L R  R+R+ AIPND+ VYL
Sbjct: 361  QNVRNDHVGQVIDEEHQENVEQPVIEPVEQQDPQEDNEITLRRSTRVRKPAIPNDFEVYL 420

Query: 167  HESEFDCGIYKDPVSFSQAIESKESDKWLNAMKDELNSMAQNNVWDLVDLPEGCKRVGCK 346
             ES+++ G   DP +FSQA+  KES+ W +AMK+E+NSM  N VWDLV LP G K +GCK
Sbjct: 421  QESDYNVGTENDPETFSQAMSCKESNLWHDAMKEEMNSMVSNKVWDLVTLPNGVKAIGCK 480

Query: 347  WVFKTKHNSNGNIERYKARLVAKGYTQKNGIDYVETFSPVSKKDSLRIIIALVAQFDLEL 526
            WVFKTK +S GNIERYKARLVAKG+TQ+ GIDY ETFSPVSKKDS R+I+ALVA F+ EL
Sbjct: 481  WVFKTKRDSQGNIERYKARLVAKGFTQREGIDYTETFSPVSKKDSFRVIMALVAHFNFEL 540

Query: 527  HQMDVKTAFLNGDLKEEVYMDQPEGFTIEGKEHMVCKLKKSIYGLKQASRQWYIKFNDTI 706
            HQMDVKTAFLNG L+EEVYM QPEGF     E++VCKL +SIYGLKQASRQWY+KF++ I
Sbjct: 541  HQMDVKTAFLNGSLEEEVYMKQPEGFYSSEGENLVCKLNRSIYGLKQASRQWYLKFHEVI 600

Query: 707  TSFGFQEN 730
            TSFGF+EN
Sbjct: 601  TSFGFEEN 608


>dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Glycine max]
          Length = 1321

 Score =  317 bits (812), Expect = 1e-96
 Identities = 161/256 (62%), Positives = 192/256 (75%), Gaps = 16/256 (6%)
 Frame = +2

Query: 11   VQNDAEQH-----------LNEDVPHE--EPNLRPADISEPQ---GIALNRPIRIRRSAI 142
            VQ D EQH           L + V H+  E + +P +  +PQ      L R  R+R+SAI
Sbjct: 720  VQRDDEQHMIGIPQTVVDNLVDQVDHQIHENDEQPVEQHDPQENVDATLRRSTRVRKSAI 779

Query: 143  PNDYVVYLHESEFDCGIYKDPVSFSQAIESKESDKWLNAMKDELNSMAQNNVWDLVDLPE 322
            P+DY+VYL ES+++ G   DP +F QA+  KES+ W +AMKDE++SM  N VW+LV+LP 
Sbjct: 780  PSDYIVYLQESDYNIGAENDPETFDQAMSCKESNLWYDAMKDEMSSMQSNKVWNLVELPN 839

Query: 323  GCKRVGCKWVFKTKHNSNGNIERYKARLVAKGYTQKNGIDYVETFSPVSKKDSLRIIIAL 502
            G K +GCKWVFKTK +S GNIERYKARLVAKG+TQK GIDY ETFSPVSKKDSLRII+AL
Sbjct: 840  GAKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYKETFSPVSKKDSLRIILAL 899

Query: 503  VAQFDLELHQMDVKTAFLNGDLKEEVYMDQPEGFTIEGKEHMVCKLKKSIYGLKQASRQW 682
            VA FDLEL QMDVKTAFLNGDL+EEVYM QPEGF+    EH+VCKL KSIYGLKQASRQW
Sbjct: 900  VAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFSSNSGEHLVCKLNKSIYGLKQASRQW 959

Query: 683  YIKFNDTITSFGFQEN 730
            Y+KF+  I+SFGF EN
Sbjct: 960  YLKFHGIISSFGFDEN 975


>gb|KYP56010.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 268

 Score =  291 bits (744), Expect = 5e-96
 Identities = 145/210 (69%), Positives = 166/210 (79%)
 Frame = +2

Query: 17  NDAEQHLNEDVPHEEPNLRPADISEPQGIALNRPIRIRRSAIPNDYVVYLHESEFDCGIY 196
           N  EQ +N+ V + EP      + +PQ I L R  R +RSAI NDYVVYL ESE D  I 
Sbjct: 64  NQEEQQINDPVVNNEPV-----VEQPQEIVLRRSQRKKRSAISNDYVVYLQESENDLSID 118

Query: 197 KDPVSFSQAIESKESDKWLNAMKDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKHNSN 376
            DPVSFS+AI    S+KWL+AM DEL SM QN++WDLV+LPEGCKRVGCKWVFKTK +S+
Sbjct: 119 NDPVSFSEAINGDNSEKWLDAMNDELKSMTQNDIWDLVELPEGCKRVGCKWVFKTKRDSH 178

Query: 377 GNIERYKARLVAKGYTQKNGIDYVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKTAFL 556
           GNIER K RLVAKG+TQK+GIDY + FSPVSKKDS RII+ALVA +DLELHQMDVKTAFL
Sbjct: 179 GNIERQKTRLVAKGFTQKDGIDYKKIFSPVSKKDSFRIIMALVAHYDLELHQMDVKTAFL 238

Query: 557 NGDLKEEVYMDQPEGFTIEGKEHMVCKLKK 646
           NG+L+E VYMDQP GF  EGKEHMVCKLKK
Sbjct: 239 NGNLEENVYMDQPMGFIEEGKEHMVCKLKK 268


>gb|KYP42882.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 196

 Score =  287 bits (735), Expect = 1e-95
 Identities = 142/199 (71%), Positives = 163/199 (81%), Gaps = 1/199 (0%)
 Frame = +2

Query: 53  HEEPNLRPADISEPQGIALNRPIRIRRSAIPNDYVVYLHESEFDCGIYK-DPVSFSQAIE 229
           H EP      + +PQ I L R  R +R AI NDY+VYLHE E D  I + DPV FSQ + 
Sbjct: 3   HNEPI-----VEQPQEIVLRRSQREKRPAISNDYMVYLHELETDSSINENDPVLFSQDVS 57

Query: 230 SKESDKWLNAMKDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKHNSNGNIERYKARLV 409
              S+KWLNAMK+EL SM QN+VWDLV+LPEGCKRVGCKWVFKTK NS+G++ERYKARLV
Sbjct: 58  CDNSEKWLNAMKEELKSMEQNDVWDLVELPEGCKRVGCKWVFKTKRNSDGSLERYKARLV 117

Query: 410 AKGYTQKNGIDYVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKTAFLNGDLKEEVYMD 589
           AKG+TQKNGIDY ETFSPVS+KDS RII+ALVA +DLELHQMDVKTAFLNG+L+E VYMD
Sbjct: 118 AKGFTQKNGIDYKETFSPVSRKDSFRIIMALVAHYDLELHQMDVKTAFLNGNLEENVYMD 177

Query: 590 QPEGFTIEGKEHMVCKLKK 646
           QP GF++EGKEHMVCKLKK
Sbjct: 178 QPMGFSVEGKEHMVCKLKK 196


>emb|CAN71183.1| hypothetical protein VITISV_033416 [Vitis vinifera]
          Length = 1255

 Score =  314 bits (804), Expect = 1e-95
 Identities = 156/241 (64%), Positives = 185/241 (76%), Gaps = 1/241 (0%)
 Frame = +2

Query: 11   VQNDAEQHLNEDVPH-EEPNLRPADISEPQGIALNRPIRIRRSAIPNDYVVYLHESEFDC 187
            V N     +++++P+  E  + P   SE  G  L R  R +RS IP+DYVVYL ES+++ 
Sbjct: 833  VDNIPVDQVDQELPNTSEQQVEPHTFSEDIGATLRRSTRTKRSVIPSDYVVYLQESDYNI 892

Query: 188  GIYKDPVSFSQAIESKESDKWLNAMKDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKH 367
            G   DP SFSQA+  KES+ W NAMKDE++SM  N+VWDLV+L  G K +GCKWVFKTK 
Sbjct: 893  GAENDPESFSQAMSCKESELWYNAMKDEMSSMXCNDVWDLVELLNGVKTIGCKWVFKTKK 952

Query: 368  NSNGNIERYKARLVAKGYTQKNGIDYVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKT 547
            +S+GNIERYKARLVAKG+TQK GIDY ETFSPVSKKDSLRII+ALVA FDLEL QMDVKT
Sbjct: 953  DSSGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKT 1012

Query: 548  AFLNGDLKEEVYMDQPEGFTIEGKEHMVCKLKKSIYGLKQASRQWYIKFNDTITSFGFQE 727
             FLNG+L EEVYM QPEGF     E + CKLKKSIYGLKQASRQWY+KF++ I+SFGF E
Sbjct: 1013 TFLNGELDEEVYMKQPEGFPSSDGEQLXCKLKKSIYGLKQASRQWYLKFHNIISSFGFVE 1072

Query: 728  N 730
            N
Sbjct: 1073 N 1073


>gb|KYP30896.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Cajanus cajan]
          Length = 289

 Score =  288 bits (738), Expect = 9e-95
 Identities = 139/209 (66%), Positives = 166/209 (79%), Gaps = 1/209 (0%)
 Frame = +2

Query: 107 LNRPIRIRRSAIPNDYVVYLHESEFDCGIYKD-PVSFSQAIESKESDKWLNAMKDELNSM 283
           L R  R R+S IP DY+V+L E E   G+ +D P++F QA++S  S KW++AMKDE+ SM
Sbjct: 1   LRRSTRERKSVIPYDYIVFLREYEDGIGLTEDDPINFCQAMQSSSSQKWIDAMKDEMKSM 60

Query: 284 AQNNVWDLVDLPEGCKRVGCKWVFKTKHNSNGNIERYKARLVAKGYTQKNGIDYVETFSP 463
             N+VWDLV+LPEG K +GCKW+FKTK +S GNIERYKARLVAKG+TQK  IDY ETFSP
Sbjct: 61  QDNDVWDLVELPEGVKPIGCKWIFKTKRDSKGNIERYKARLVAKGFTQKEDIDYKETFSP 120

Query: 464 VSKKDSLRIIIALVAQFDLELHQMDVKTAFLNGDLKEEVYMDQPEGFTIEGKEHMVCKLK 643
           VS KDS RII+ALVA +DLELHQMDVKTAFLNGD++E +YM QPE F     + MVCKLK
Sbjct: 121 VSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGDIEETIYMMQPENFVSGDSKSMVCKLK 180

Query: 644 KSIYGLKQASRQWYIKFNDTITSFGFQEN 730
           KSIYGLKQASRQWY KF+  ITS+GF+ N
Sbjct: 181 KSIYGLKQASRQWYHKFHQVITSYGFEAN 209


>gb|KYP41883.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 327

 Score =  286 bits (733), Expect = 2e-93
 Identities = 138/224 (61%), Positives = 170/224 (75%), Gaps = 1/224 (0%)
 Frame = +2

Query: 62  PNLRPADISEPQGIALNRPIRIRRSAIPNDYVVYLHESEFDCGIYKD-PVSFSQAIESKE 238
           P +      +PQ + L R  R RRS IP+DY+V+L E E   G+ KD P++F QA+ +  
Sbjct: 33  PQIHIEQAQKPQEVPLRRSTRERRSEIPDDYIVFLQEHEDGIGLTKDDPINFCQAMPNSN 92

Query: 239 SDKWLNAMKDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKHNSNGNIERYKARLVAKG 418
           S KW++AMKDE+ S+  N+VWDLV+LP+G KR+GCKW+FK K +S GNIERYKA LVAKG
Sbjct: 93  SQKWIDAMKDEIKSIQDNDVWDLVELPKGVKRIGCKWIFKAKKDSKGNIERYKACLVAKG 152

Query: 419 YTQKNGIDYVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKTAFLNGDLKEEVYMDQPE 598
           +TQK GIDY ETFSPVS KDS RII+ LVA +DLE HQMDVKTAF+NGD++E+ YM QPE
Sbjct: 153 FTQKEGIDYKETFSPVSSKDSFRIIMTLVAHYDLEFHQMDVKTAFVNGDIEEKNYMMQPE 212

Query: 599 GFTIEGKEHMVCKLKKSIYGLKQASRQWYIKFNDTITSFGFQEN 730
            F     + MVCKLKKSIYGLKQASRQWY KF+  ITS+GF+ N
Sbjct: 213 IFLFGDSKFMVCKLKKSIYGLKQASRQWYHKFHQVITSYGFEAN 256


>emb|CAN83951.1| hypothetical protein VITISV_043907 [Vitis vinifera]
          Length = 745

 Score =  299 bits (765), Expect = 2e-93
 Identities = 148/240 (61%), Positives = 177/240 (73%)
 Frame = +2

Query: 11  VQNDAEQHLNEDVPHEEPNLRPADISEPQGIALNRPIRIRRSAIPNDYVVYLHESEFDCG 190
           V N     +++++P  E  + P    E  G  L R  R +RS IPNDYVVYL E +++ G
Sbjct: 121 VDNILVDQVDQELPDTEQQVEPHTFLEDIGATLRRSTRTKRSTIPNDYVVYLQECDYNIG 180

Query: 191 IYKDPVSFSQAIESKESDKWLNAMKDELNSMAQNNVWDLVDLPEGCKRVGCKWVFKTKHN 370
              DP  F QA+  KES+ W NAMKDE++SM  N+VWDLV+L  G K +GCKWVFKTK +
Sbjct: 181 AKNDPEFFLQAMSCKESELWYNAMKDEMSSMKCNDVWDLVELLNGAKTIGCKWVFKTKKD 240

Query: 371 SNGNIERYKARLVAKGYTQKNGIDYVETFSPVSKKDSLRIIIALVAQFDLELHQMDVKTA 550
           S  NIERYK RLVAKG+TQK GIDY ETFS VSKKDSLRII+ALVA FDLEL QMDVKT 
Sbjct: 241 SLDNIERYKVRLVAKGFTQKEGIDYTETFSLVSKKDSLRIILALVAHFDLELQQMDVKTT 300

Query: 551 FLNGDLKEEVYMDQPEGFTIEGKEHMVCKLKKSIYGLKQASRQWYIKFNDTITSFGFQEN 730
           FLNG+L+EEVYM QPEGF     E +VCKLKKSIY LKQASR+WY+KF++  +SFGF+EN
Sbjct: 301 FLNGELEEEVYMKQPEGFPSSDGEQLVCKLKKSIYSLKQASRKWYLKFHNINSSFGFEEN 360