BLASTX nr result
ID: Cheilocostus21_contig00042788
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cheilocostus21_contig00042788
(1479 letters)
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
149,584,005 sequences; 54,822,741,787 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|KYP31265.1| Retrovirus-related Pol polyprotein from transposo... 135 1e-72
dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Gl... 132 9e-72
gb|ABF96216.1| retrotransposon protein, putative, Ty1-copia subc... 138 4e-70
gb|AAP46197.1| putative gag-pol polyprotein [Oryza sativa Japoni... 138 4e-70
emb|CAN67821.1| hypothetical protein VITISV_025855, partial [Vit... 133 6e-70
emb|CAN73613.1| hypothetical protein VITISV_023299 [Vitis vinifera] 131 1e-68
emb|CAN83951.1| hypothetical protein VITISV_043907 [Vitis vinifera] 131 2e-68
gb|KZV24002.1| hypothetical protein F511_44258 [Dorcoceras hygro... 122 1e-67
emb|CAN82869.1| hypothetical protein VITISV_019901 [Vitis vinifera] 130 4e-66
emb|CAN69396.1| hypothetical protein VITISV_021034 [Vitis vinifera] 130 5e-66
gb|AAD12998.1| pol polyprotein [Zea mays] 122 1e-65
gb|KYP39716.1| Retrovirus-related Pol polyprotein from transposo... 120 4e-65
gb|KYP64870.1| Retrovirus-related Pol polyprotein from transposo... 120 4e-65
gb|AAD12997.1| gag-pol polyprotein [Zea mays] 122 6e-65
gb|AHL77759.1| polyprotein [Prunus persica] 115 1e-63
emb|CDF77009.1| hypothetical transposable element-related protei... 119 1e-63
gb|ABA95205.1| retrotransposon protein, putative, Ty1-copia subc... 126 3e-63
gb|PRQ34200.1| putative RNA-directed DNA polymerase [Rosa chinen... 118 6e-63
emb|CAN80145.1| hypothetical protein VITISV_015720 [Vitis vinifera] 97 2e-62
gb|PRQ52817.1| putative RNA-directed DNA polymerase [Rosa chinen... 115 3e-62
>gb|KYP31265.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 425
Score = 135 bits (339), Expect(4) = 1e-72
Identities = 61/123 (49%), Positives = 92/123 (74%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
V ++A A+SW + KQT+TA+STM+ EF+SC+EAT+ +WLK FI+GL +VD I+KPLK+
Sbjct: 290 VFMLACGAVSWSSRKQTLTATSTMEAEFVSCFEATSHGVWLKSFISGLRVVDSIAKPLKL 349
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
+ DNS A+F KNNK S KH+ +KYL+I + VK+ ++I+++ ++ +I D LTKG+ P
Sbjct: 350 YCDNSAAVFMAKNNKSGSRSKHIDIKYLVIRERVKEKKVVIEHVSTELMIADPLTKGMPP 409
Query: 1232 TFF 1240
F
Sbjct: 410 KNF 412
Score = 81.3 bits (199), Expect(4) = 1e-72
Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 7/83 (8%)
Frame = +2
Query: 335 FLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGD-------KNSQERSQRMLGLSQK 493
FLVLYVDDILLA++D L + K FLSK +D+KD+G+ K +ERS+ +LGLSQ+
Sbjct: 96 FLVLYVDDILLATNDKGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQE 155
Query: 494 SYIERILNKFNVQDCKSENASIV 562
+YI ++L +FN++DC A IV
Sbjct: 156 TYINKVLERFNMKDCSPSVAPIV 178
Score = 71.6 bits (174), Expect(4) = 1e-72
Identities = 38/54 (70%), Positives = 41/54 (75%)
Frame = +3
Query: 567 VKGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY 728
VKGDKL LSQ PKN ER MK+I Y+S VGSLMYAQV TR DIAF V +L RY
Sbjct: 178 VKGDKLELSQCPKNNLEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGRY 231
Score = 58.5 bits (140), Expect(4) = 1e-72
Identities = 27/46 (58%), Positives = 32/46 (69%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGC 873
NPG DH KK MRYL+ TK++ LIY+ D+L V GY D DFAGC
Sbjct: 234 NPGVDHWKAAKKVMRYLQGTKDFMLIYRRTDSLEVIGYSDSDFAGC 279
>dbj|BAG72096.1| Gag-protease-integrase-RT-RNaseH polyprotein [Glycine max]
Length = 1321
Score = 132 bits (333), Expect(4) = 9e-72
Identities = 61/123 (49%), Positives = 90/123 (73%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
+ ++AG AISW + KQ++ A+STM+ EF+SC+EAT+ +WLK FI+GL ++D IS+PL+I
Sbjct: 1186 IFMMAGGAISWGSVKQSLAATSTMEAEFVSCFEATSHGVWLKSFISGLKIIDTISRPLRI 1245
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
F DNS A+F KNNK S KH+ +KYL I + VK ++I++I ++ +I D LTKG+ P
Sbjct: 1246 FCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKDKKVVIEHISTELMIADPLTKGMPP 1305
Query: 1232 TFF 1240
F
Sbjct: 1306 FKF 1308
Score = 80.1 bits (196), Expect(4) = 9e-72
Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 7/83 (8%)
Frame = +2
Query: 335 FLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGD-------KNSQERSQRMLGLSQK 493
FLVLYVDDILLA++D L + K FLSK +D+KD+GD K ++RS+ +LGLSQ+
Sbjct: 992 FLVLYVDDILLAANDRGLLHEVKQFLSKNFDMKDMGDASYVIGIKIHRDRSRGILGLSQE 1051
Query: 494 SYIERILNKFNVQDCKSENASIV 562
+YI +IL +F ++DC A IV
Sbjct: 1052 TYINKILERFRMKDCSPSVAPIV 1074
Score = 70.9 bits (172), Expect(4) = 9e-72
Identities = 36/54 (66%), Positives = 43/54 (79%)
Frame = +3
Query: 567 VKGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY 728
VKGD+ +L+Q PKN +ER MK+I Y+SVVGSLMYAQV TR DIAF V +L RY
Sbjct: 1074 VKGDRFNLNQCPKNDFEREQMKNIPYASVVGSLMYAQVCTRPDIAFAVGMLGRY 1127
Score = 59.7 bits (143), Expect(4) = 9e-72
Identities = 30/53 (56%), Positives = 36/53 (67%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGCPNNSRRS 894
NPG DH KK +RYL+ TK+Y L+Y+ DNL GY D DFAGC +SRRS
Sbjct: 1130 NPGIDHWRAAKKVLRYLQGTKDYMLMYRQTDNLDAIGYSDSDFAGCV-DSRRS 1181
>gb|ABF96216.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 904
Score = 138 bits (347), Expect(4) = 4e-70
Identities = 62/123 (50%), Positives = 88/123 (71%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
V +A AISWK++KQT+T SSTMQ EF++CYEAT Q +WLK I GL +VD ISKP+ +
Sbjct: 769 VFTLANGAISWKSSKQTLTTSSTMQAEFLACYEATGQAVWLKNLIPGLRVVDSISKPITL 828
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
+YDN A+F++ NNK S A KH+ +KY ++ D ++ I I++I + +++ D LTKGL P
Sbjct: 829 YYDNKAAVFYSSNNKSSGAAKHIDIKYHVVKDRIQDQTIKIEHISTKSMLADPLTKGLPP 888
Query: 1232 TFF 1240
F
Sbjct: 889 NLF 891
Score = 81.6 bits (200), Expect(4) = 4e-70
Identities = 46/98 (46%), Positives = 62/98 (63%), Gaps = 8/98 (8%)
Frame = +2
Query: 293 LDNVYISKPMEGN-LFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGDKN------ 451
+DN K G + LVLYVDDILLAS DI+ L K FLS +D+KDLG+ +
Sbjct: 560 VDNCIYIKTKGGKFIILVLYVDDILLASSDINMLHQTKEFLSSNFDMKDLGEASYVLGIE 619
Query: 452 -SQERSQRMLGLSQKSYIERILNKFNVQDCKSENASIV 562
++RS+ +LGLSQKSYI R+L ++N+ C + A IV
Sbjct: 620 IHRDRSKGVLGLSQKSYISRVLKRYNMSKCSATPAPIV 657
Score = 62.4 bits (150), Expect(4) = 4e-70
Identities = 30/54 (55%), Positives = 38/54 (70%)
Frame = +3
Query: 567 VKGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY 728
VKGDK L Q PKN E + MK + Y+S VGSLMYA+V TR D+AF+ +L R+
Sbjct: 657 VKGDKFGLFQSPKNKLESDQMKMVPYASAVGSLMYAEVCTRPDLAFVTGMLSRF 710
Score = 55.8 bits (133), Expect(4) = 4e-70
Identities = 26/51 (50%), Positives = 32/51 (62%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGCPNNSR 888
NPG DH VKK +RY + TK+Y L YK + L V GY D DFAGC + +
Sbjct: 713 NPGLDHWKAVKKVLRYFQGTKDYMLTYKKSEELEVLGYSDADFAGCVDTKK 763
>gb|AAP46197.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 890
Score = 138 bits (347), Expect(4) = 4e-70
Identities = 62/123 (50%), Positives = 88/123 (71%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
V +A AISWK++KQT+T SSTMQ EF++CYEAT Q +WLK I GL +VD ISKP+ +
Sbjct: 755 VFTLANGAISWKSSKQTLTTSSTMQAEFLACYEATGQAVWLKNLIPGLRVVDSISKPITL 814
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
+YDN A+F++ NNK S A KH+ +KY ++ D ++ I I++I + +++ D LTKGL P
Sbjct: 815 YYDNKAAVFYSSNNKSSGAAKHIDIKYHVVKDRIQDQTIKIEHISTKSMLADPLTKGLPP 874
Query: 1232 TFF 1240
F
Sbjct: 875 NLF 877
Score = 81.6 bits (200), Expect(4) = 4e-70
Identities = 46/98 (46%), Positives = 62/98 (63%), Gaps = 8/98 (8%)
Frame = +2
Query: 293 LDNVYISKPMEGN-LFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGDKN------ 451
+DN K G + LVLYVDDILLAS DI+ L K FLS +D+KDLG+ +
Sbjct: 546 VDNCIYIKTKGGKFIILVLYVDDILLASSDINMLHQTKEFLSSNFDMKDLGEASYVLGIE 605
Query: 452 -SQERSQRMLGLSQKSYIERILNKFNVQDCKSENASIV 562
++RS+ +LGLSQKSYI R+L ++N+ C + A IV
Sbjct: 606 IHRDRSKGVLGLSQKSYISRVLKRYNMSKCSATPAPIV 643
Score = 62.4 bits (150), Expect(4) = 4e-70
Identities = 30/54 (55%), Positives = 38/54 (70%)
Frame = +3
Query: 567 VKGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY 728
VKGDK L Q PKN E + MK + Y+S VGSLMYA+V TR D+AF+ +L R+
Sbjct: 643 VKGDKFGLFQSPKNKLESDQMKMVPYASAVGSLMYAEVCTRPDLAFVTGMLSRF 696
Score = 55.8 bits (133), Expect(4) = 4e-70
Identities = 26/51 (50%), Positives = 32/51 (62%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGCPNNSR 888
NPG DH VKK +RY + TK+Y L YK + L V GY D DFAGC + +
Sbjct: 699 NPGLDHWKAVKKVLRYFQGTKDYMLTYKKSEELEVLGYSDADFAGCVDTKK 749
>emb|CAN67821.1| hypothetical protein VITISV_025855, partial [Vitis vinifera]
Length = 1356
Score = 133 bits (335), Expect(4) = 6e-70
Identities = 58/123 (47%), Positives = 92/123 (74%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
+ ++AG AISW++AKQT+ SSTM+ EF++CYEA+ Q IWL+ F+TGL ++D I +PLKI
Sbjct: 1217 IYLLAGGAISWRSAKQTLVTSSTMEAEFVACYEASNQGIWLRNFVTGLRVLDGIERPLKI 1276
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
F DN A+ ++ NN+ S+ K++ +K+L++ + V+ G I I++I ++++I D LTKGL P
Sbjct: 1277 FCDNKSAVLYSNNNRSSTKSKYIDIKFLVVKEKVQSGQISIEHIGTNSMIADPLTKGLPP 1336
Query: 1232 TFF 1240
F
Sbjct: 1337 KVF 1339
Score = 77.8 bits (190), Expect(4) = 6e-70
Identities = 38/77 (49%), Positives = 58/77 (75%), Gaps = 7/77 (9%)
Frame = +2
Query: 332 LFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGDKN-------SQERSQRMLGLSQ 490
+FLVLYVDDILLA++DI L D K FLSK +++KDLGD + ++RS+ +LGLSQ
Sbjct: 1022 IFLVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQ 1081
Query: 491 KSYIERILNKFNVQDCK 541
++YI+++L ++ +Q+ K
Sbjct: 1082 RTYIDKVLQRYGMQNSK 1098
Score = 65.9 bits (159), Expect(4) = 6e-70
Identities = 36/63 (57%), Positives = 42/63 (66%), Gaps = 4/63 (6%)
Frame = +3
Query: 570 KGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRYF----IQ 737
KGDK SL+Q PKN E M+ I Y+S VGSLMYAQV TR DIA+IV +L RY +
Sbjct: 1106 KGDKFSLNQCPKNSLESQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMD 1165
Query: 738 SWK 746
WK
Sbjct: 1166 HWK 1168
Score = 60.1 bits (144), Expect(4) = 6e-70
Identities = 29/53 (54%), Positives = 36/53 (67%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGCPNNSRRS 894
NPG DH K+ MRYL++TK Y L Y+ +D L + GY D DFAGC +SRRS
Sbjct: 1161 NPGMDHWKAAKRVMRYLQRTKEYMLTYRRLDQLELIGYSDSDFAGC-QDSRRS 1212
>emb|CAN73613.1| hypothetical protein VITISV_023299 [Vitis vinifera]
Length = 1815
Score = 131 bits (330), Expect(4) = 1e-68
Identities = 57/120 (47%), Positives = 91/120 (75%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
+ ++AG AISW++AKQT+ SSTM+ EF++CYEA+ Q IWL+ F+TGL ++D I +PLKI
Sbjct: 1173 IYLLAGGAISWRSAKQTLXTSSTMEAEFVACYEASNQGIWLRNFVTGLRVLDGIERPLKI 1232
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
F DN A+ ++ NN+ S+ K++ +K+L++ + V+ G I I++I ++++I D LTKGL P
Sbjct: 1233 FCDNKSAVLYSNNNRSSTKSKYIDIKFLVVKEKVQSGQISIEHIGTNSMIADPLTKGLPP 1292
Score = 76.6 bits (187), Expect(4) = 1e-68
Identities = 38/77 (49%), Positives = 57/77 (74%), Gaps = 7/77 (9%)
Frame = +2
Query: 332 LFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGDKN-------SQERSQRMLGLSQ 490
+FLVLYVDDILLA++DI L D K FLSK +++KDLGD + ++RS+ +LGLSQ
Sbjct: 978 IFLVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQ 1037
Query: 491 KSYIERILNKFNVQDCK 541
++YI+++L + +Q+ K
Sbjct: 1038 RTYIDKVLQXYGMQNSK 1054
Score = 63.5 bits (153), Expect(4) = 1e-68
Identities = 33/53 (62%), Positives = 38/53 (71%)
Frame = +3
Query: 570 KGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY 728
KGDK SL+Q PKN E M+ I Y+S VGSLMYAQV TR DIA+I +L RY
Sbjct: 1062 KGDKFSLNQCPKNSLESQEMQKIPYASAVGSLMYAQVCTRPDIAYIXGMLGRY 1114
Score = 60.8 bits (146), Expect(4) = 1e-68
Identities = 29/53 (54%), Positives = 36/53 (67%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGCPNNSRRS 894
NPG DH K+ MRYL++TK Y L Y+ +D L + GY D DFAGC +SRRS
Sbjct: 1117 NPGMDHWRAAKRVMRYLQRTKEYMLTYRRLDQLEIIGYSDSDFAGC-QDSRRS 1168
>emb|CAN83951.1| hypothetical protein VITISV_043907 [Vitis vinifera]
Length = 745
Score = 131 bits (330), Expect(5) = 2e-68
Identities = 61/123 (49%), Positives = 89/123 (72%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
+ I+AG AISW++ KQT+TA+STM+ EFISC+E T+ +WL FI GL ++D IS+ L I
Sbjct: 571 IFILAGGAISWRSVKQTMTATSTMEAEFISCFETTSHGVWLTSFIFGLRVMDSISRSLSI 630
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
+ DNS +F KNNK S KH+ +KYL IS+ VK+ ++I++I ++ +I+D LTKG+ P
Sbjct: 631 YCDNSVVVFMAKNNKTGSRSKHIDIKYLAISERVKEKKVVIEHISTELMIVDPLTKGMPP 690
Query: 1232 TFF 1240
F
Sbjct: 691 LKF 693
Score = 71.6 bits (174), Expect(5) = 2e-68
Identities = 38/87 (43%), Positives = 59/87 (67%), Gaps = 7/87 (8%)
Frame = +2
Query: 335 FLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGD-------KNSQERSQRMLGLSQK 493
FLVLY+DDILLA++D FL + K FLSK +++KD+G+ K ++R Q +LGLSQ+
Sbjct: 377 FLVLYMDDILLATNDKGFLYEVKQFLSKNFNMKDMGEASYVIGIKIHRDRFQGILGLSQE 436
Query: 494 SYIERILNKFNVQDCKSENASIVICKR 574
+YI ++L +F +++C + IV R
Sbjct: 437 TYINKVLERFWMKNCSLSVSPIVKSNR 463
Score = 63.2 bits (152), Expect(5) = 2e-68
Identities = 33/54 (61%), Positives = 39/54 (72%)
Frame = +3
Query: 567 VKGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY 728
VK ++ +L Q PKN ER MK+I Y+S VGSLMYAQV TR DIAF V +L RY
Sbjct: 459 VKSNRFNLDQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRY 512
Score = 63.2 bits (152), Expect(5) = 2e-68
Identities = 31/53 (58%), Positives = 37/53 (69%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGCPNNSRRS 894
NPG DH KK MRYL+ TK+YKL+Y+ NL V GY D DFAGC +SR+S
Sbjct: 515 NPGKDHWKAAKKVMRYLQGTKDYKLMYRRTSNLEVVGYSDSDFAGCV-DSRKS 566
Score = 23.1 bits (48), Expect(5) = 2e-68
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 238 INSTFKLQSTNMVTVKGSSRQCIYLKTNGRK 330
INS+F + M QCIYLK +G K
Sbjct: 351 INSSFGFEENVM-------DQCIYLKVSGSK 374
>gb|KZV24002.1| hypothetical protein F511_44258 [Dorcoceras hygrometricum]
Length = 410
Score = 122 bits (306), Expect(4) = 1e-67
Identities = 52/120 (43%), Positives = 86/120 (71%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
V ++ G AISWK+AKQ+I ASSTM EFI+CYE + +WL+ F+TGL +VD I + LK+
Sbjct: 290 VYLLIGGAISWKSAKQSIIASSTMATEFIACYETSNHGLWLRNFVTGLRIVDGIERQLKL 349
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
+DN A+ ++ NN ++ KH+ +K+L++ + ++ G + I++I +++++ D LTKGL P
Sbjct: 350 HFDNKSAVLYSNNNMSTTKSKHIDIKFLVVKERIQSGQLSIEHIGANSMVADPLTKGLPP 409
Score = 85.1 bits (209), Expect(4) = 1e-67
Identities = 45/89 (50%), Positives = 61/89 (68%), Gaps = 7/89 (7%)
Frame = +2
Query: 296 DNVYISKPMEGNLFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGDKN-------S 454
D VY ++FLVLYVDDILLAS+DI+ L D K FLSK +++KDLGD +
Sbjct: 83 DCVYHKFNGSKHIFLVLYVDDILLASNDIELLHDTKRFLSKHFEMKDLGDASFVLGIQIH 142
Query: 455 QERSQRMLGLSQKSYIERILNKFNVQDCK 541
+ RS +LGLSQK+YIE++L ++ + DCK
Sbjct: 143 RARSHGILGLSQKNYIEKVLKRYGMHDCK 171
Score = 65.1 bits (157), Expect(4) = 1e-67
Identities = 33/63 (52%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Frame = +3
Query: 570 KGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRYF----IQ 737
KGDK SL Q PKN +E+ ++ I Y+S VGSLMYAQV TR DIA++ +L RY ++
Sbjct: 179 KGDKFSLDQCPKNDFEKKEIEKIPYASAVGSLMYAQVCTRPDIAYVTGMLGRYLSNPGME 238
Query: 738 SWK 746
WK
Sbjct: 239 HWK 241
Score = 57.0 bits (136), Expect(4) = 1e-67
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGCPNNSR 888
NPG +H VK+ +RYL++TKN L Y+ +D L + GY D DFAGC ++ +
Sbjct: 234 NPGMEHWKAVKRVLRYLQRTKNCMLTYRRLDQLEIIGYTDSDFAGCKDSMK 284
>emb|CAN82869.1| hypothetical protein VITISV_019901 [Vitis vinifera]
Length = 1083
Score = 130 bits (328), Expect(4) = 4e-66
Identities = 57/123 (46%), Positives = 91/123 (73%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
+ ++AG AISW++AKQT+ SSTM+ EF++CYEA+ Q IWL+ F+TGL ++D I +PLKI
Sbjct: 944 IYLLAGGAISWRSAKQTLXTSSTMEAEFVACYEASNQGIWLRNFVTGLRVLDGIERPLKI 1003
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
F DN A+ ++ NN+ S+ K++ +K+L++ + V+ G I I++I ++++I D L KGL P
Sbjct: 1004 FCDNKSAVLYSNNNRSSTKSKYIDIKFLVVKEKVQSGQISIEHIGTNSMIADPLXKGLPP 1063
Query: 1232 TFF 1240
F
Sbjct: 1064 KVF 1066
Score = 77.8 bits (190), Expect(4) = 4e-66
Identities = 38/77 (49%), Positives = 58/77 (75%), Gaps = 7/77 (9%)
Frame = +2
Query: 332 LFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGDKN-------SQERSQRMLGLSQ 490
+FLVLYVDDILLA++DI L D K FLSK +++KDLGD + ++RS+ +LGLSQ
Sbjct: 759 IFLVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGIQIHRDRSRGILGLSQ 818
Query: 491 KSYIERILNKFNVQDCK 541
++YI+++L ++ +Q+ K
Sbjct: 819 RTYIDKVLQRYGMQNSK 835
Score = 65.5 bits (158), Expect(4) = 4e-66
Identities = 34/53 (64%), Positives = 39/53 (73%)
Frame = +3
Query: 570 KGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY 728
KGDK SL+Q PKN E M+ I Y+S VGSLMYAQV TR DIA+IV +L RY
Sbjct: 843 KGDKFSLNQCPKNSLESQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRY 895
Score = 50.4 bits (119), Expect(4) = 4e-66
Identities = 24/45 (53%), Positives = 31/45 (68%)
Frame = +1
Query: 760 VVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGCPNNSRRS 894
+ K+ MRYL++TK Y L Y+ +D L GY D DFAGC +SRRS
Sbjct: 896 LTKRVMRYLQRTKEYMLTYRRLDQLEFIGYSDSDFAGC-QDSRRS 939
>emb|CAN69396.1| hypothetical protein VITISV_021034 [Vitis vinifera]
Length = 2026
Score = 130 bits (327), Expect(4) = 5e-66
Identities = 66/150 (44%), Positives = 107/150 (71%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
V ++A AISWK+ KQ+ITASSTM+ EF++C+EA++ V+WL+ FI+GL +VD I+KPL+I
Sbjct: 978 VFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHVLWLQNFISGLGVVDPIAKPLRI 1037
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
+ DN+ +FF+KN K SS KH+ +KYL++ + V+K + I+ I + ++ D LTKGL P
Sbjct: 1038 YCDNTATVFFSKNGKFSSGSKHMDLKYLVVKERVQKQQMSIENIRTTLMVADPLTKGLPP 1097
Query: 1232 TFFL*IMLQI*VL*SLLMYLVNESFL*YNI 1321
+L ++++ +L SL+ ++ F Y +
Sbjct: 1098 KAYLEHVMRMGLL-SLIKRRRDQGFKIYKL 1126
Score = 80.5 bits (197), Expect(4) = 5e-66
Identities = 41/94 (43%), Positives = 62/94 (65%), Gaps = 7/94 (7%)
Frame = +2
Query: 302 VYISKPMEGNLFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGDKN-------SQE 460
+Y+ +FL+LYVDDILLAS D+ L++ K +LSK + + D+G+ N ++
Sbjct: 773 IYLKVSGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVIGIEIFRD 832
Query: 461 RSQRMLGLSQKSYIERILNKFNVQDCKSENASIV 562
RS+ +LGLSQK YI+R+L +FN+Q C S A I+
Sbjct: 833 RSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPIL 866
Score = 62.8 bits (151), Expect(4) = 5e-66
Identities = 33/54 (61%), Positives = 38/54 (70%)
Frame = +3
Query: 567 VKGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY 728
+KGDKLS Q P+N ER MK I Y+S VGSLMYAQ TR DI+F V +L RY
Sbjct: 866 LKGDKLSKMQCPRNNXEREQMKKIPYASXVGSLMYAQTCTRPDISFAVGMLGRY 919
Score = 50.4 bits (119), Expect(4) = 5e-66
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGCPNN 882
+PG +H KK MRYL+ TK+Y L YK + L V GY + D+ GC ++
Sbjct: 922 DPGFEHWKXAKKVMRYLQGTKDYMLTYKRSEQLEVVGYSBSDYGGCLBS 970
>gb|AAD12998.1| pol polyprotein [Zea mays]
Length = 998
Score = 122 bits (307), Expect(4) = 1e-65
Identities = 57/123 (46%), Positives = 85/123 (69%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
V +++G AISWK+ KQT ASSTM EF++ YEAT Q IW+KKF+ GL +VD I +PL+I
Sbjct: 863 VFMLSGGAISWKSCKQTARASSTMHAEFVATYEATGQAIWIKKFVPGLRVVDSIERPLRI 922
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
+ DN A+FF+ NNK S + K++ +K I+ + + I +++I + ++ D LTKGL P
Sbjct: 923 YCDNEPAVFFSHNNKSSGSAKYIDIKCYIVKEKILDHTIQVEHIRTHQMLADPLTKGLPP 982
Query: 1232 TFF 1240
+ F
Sbjct: 983 SVF 985
Score = 83.2 bits (204), Expect(4) = 1e-65
Identities = 45/97 (46%), Positives = 63/97 (64%), Gaps = 8/97 (8%)
Frame = +2
Query: 296 DNVYISKPMEGN-LFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGDKN------- 451
DN +K +G +FLVLYVDDILLAS D D L + K FLS +D+KD+G+ +
Sbjct: 655 DNCIYAKFRKGKYIFLVLYVDDILLASSDKDLLAETKGFLSSNFDMKDMGEASYVLGIEI 714
Query: 452 SQERSQRMLGLSQKSYIERILNKFNVQDCKSENASIV 562
++R +R+LGLSQKSYIE +L ++N+ C + IV
Sbjct: 715 RRDRQKRVLGLSQKSYIENVLKRYNMHKCNASPGPIV 751
Score = 67.8 bits (164), Expect(4) = 1e-65
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Frame = +3
Query: 567 VKGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY----FI 734
VKGDK Q PKN YE+N MKS+ Y+S +GS+MYAQV TR D+AF +L RY I
Sbjct: 751 VKGDKFGEYQCPKNQYEKNKMKSVPYASAIGSIMYAQVCTRPDLAFTTGMLGRYQKNPGI 810
Query: 735 QSWK 746
+ WK
Sbjct: 811 EHWK 814
Score = 49.3 bits (116), Expect(4) = 1e-65
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGC 873
NPG +H VKKA+RYL+ TK L Y+ ++L + GY D D+ GC
Sbjct: 807 NPGIEHWKAVKKALRYLQGTKGLMLTYRRSNSLQIVGYADADWGGC 852
>gb|KYP39716.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 1331
Score = 120 bits (300), Expect(4) = 4e-65
Identities = 55/123 (44%), Positives = 87/123 (70%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
+ ++AG AISWK+ KQTI ASSTM EFI+C+EA+ IWL+ FIT L +V+ I +PLKI
Sbjct: 1193 IFMLAGGAISWKSVKQTIIASSTMAAEFIACFEASNHGIWLRNFITNLRVVNGIERPLKI 1252
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
+ DN+ A+ ++ NN+ ++ K + +K+L++ + V+ I I++I ++ ++ D LTKGL P
Sbjct: 1253 YCDNNSAVLYSNNNRSTTKSKFIDIKFLVVKERVQNKQISIEHIGTNFMLADPLTKGLVP 1312
Query: 1232 TFF 1240
F
Sbjct: 1313 KVF 1315
Score = 72.8 bits (177), Expect(4) = 4e-65
Identities = 37/83 (44%), Positives = 58/83 (69%), Gaps = 7/83 (8%)
Frame = +2
Query: 332 LFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGD-------KNSQERSQRMLGLSQ 490
+FLVLYVDDILLAS DI L + K FL+K +++KDLG+ K ++RS ++ LSQ
Sbjct: 998 IFLVLYVDDILLASSDIGLLHETKRFLTKNFEMKDLGEASFVLGIKILRDRSHGIIRLSQ 1057
Query: 491 KSYIERILNKFNVQDCKSENASI 559
++YI+++L++F ++D K + I
Sbjct: 1058 ENYIDKVLDRFGMKDSKPGDTPI 1080
Score = 70.5 bits (171), Expect(4) = 4e-65
Identities = 39/63 (61%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Frame = +3
Query: 570 KGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRYF----IQ 737
KGDK SL Q P N ERN M+ I Y+S VGSLMYAQV TR DIAFIV +L RY +Q
Sbjct: 1082 KGDKFSLKQCPNNDLERNEMQKIPYASAVGSLMYAQVCTRPDIAFIVGVLGRYLSNPGMQ 1141
Query: 738 SWK 746
WK
Sbjct: 1142 HWK 1144
Score = 57.8 bits (138), Expect(4) = 4e-65
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGCPNNSR 888
NPG H VK+ MRYL++TK Y L Y+ D+L + GY D DFAGC ++ R
Sbjct: 1137 NPGMQHWKAVKRVMRYLKRTKGYMLTYQKSDSLEIIGYSDSDFAGCQDSKR 1187
>gb|KYP64870.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
gb|KYP73943.1| Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
cajan]
Length = 384
Score = 120 bits (300), Expect(4) = 4e-65
Identities = 55/123 (44%), Positives = 87/123 (70%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
+ ++AG AISWK+ KQTI ASSTM EFI+C+EA+ IWL+ FIT L +V+ I +PLKI
Sbjct: 246 IFMLAGGAISWKSVKQTIIASSTMAAEFIACFEASNHGIWLRNFITNLRVVNGIERPLKI 305
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
+ DN+ A+ ++ NN+ ++ K + +K+L++ + V+ I I++I ++ ++ D LTKGL P
Sbjct: 306 YCDNNSAVLYSNNNRSTTKSKFIDIKFLVVKERVQNKQISIEHIGTNFMLADPLTKGLVP 365
Query: 1232 TFF 1240
F
Sbjct: 366 KVF 368
Score = 72.8 bits (177), Expect(4) = 4e-65
Identities = 37/83 (44%), Positives = 58/83 (69%), Gaps = 7/83 (8%)
Frame = +2
Query: 332 LFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGD-------KNSQERSQRMLGLSQ 490
+FLVLYVDDILLAS DI L + K FL+K +++KDLG+ K ++RS ++ LSQ
Sbjct: 51 IFLVLYVDDILLASSDIGLLHETKRFLTKNFEMKDLGEASFVLGIKILRDRSHGIIRLSQ 110
Query: 491 KSYIERILNKFNVQDCKSENASI 559
++YI+++L++F ++D K + I
Sbjct: 111 ENYIDKVLDRFGMKDSKPGDTPI 133
Score = 70.5 bits (171), Expect(4) = 4e-65
Identities = 39/63 (61%), Positives = 43/63 (68%), Gaps = 4/63 (6%)
Frame = +3
Query: 570 KGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRYF----IQ 737
KGDK SL Q P N ERN M+ I Y+S VGSLMYAQV TR DIAFIV +L RY +Q
Sbjct: 135 KGDKFSLKQCPNNDLERNEMQKIPYASAVGSLMYAQVCTRPDIAFIVGVLGRYLSNPGMQ 194
Query: 738 SWK 746
WK
Sbjct: 195 HWK 197
Score = 57.8 bits (138), Expect(4) = 4e-65
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGCPNNSR 888
NPG H VK+ MRYL++TK Y L Y+ D+L + GY D DFAGC ++ R
Sbjct: 190 NPGMQHWKAVKRVMRYLKRTKGYMLTYQKSDSLEIIGYSDSDFAGCQDSKR 240
>gb|AAD12997.1| gag-pol polyprotein [Zea mays]
Length = 1406
Score = 122 bits (307), Expect(4) = 6e-65
Identities = 57/123 (46%), Positives = 85/123 (69%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
V +++G AISWK+ KQT ASSTM EF++ YEAT Q IW+KKF+ GL +VD I +PL+I
Sbjct: 1271 VFMLSGGAISWKSCKQTARASSTMHAEFVATYEATGQAIWIKKFVPGLRVVDSIERPLRI 1330
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
+ DN A+FF+ NNK S + K++ +K I+ + + I +++I + ++ D LTKGL P
Sbjct: 1331 YCDNEPAVFFSHNNKSSGSAKYIDIKCYIVKEKILDHTIQVEHIRTHQMLADPLTKGLPP 1390
Query: 1232 TFF 1240
+ F
Sbjct: 1391 SVF 1393
Score = 80.5 bits (197), Expect(4) = 6e-65
Identities = 44/97 (45%), Positives = 62/97 (63%), Gaps = 8/97 (8%)
Frame = +2
Query: 296 DNVYISKPMEGN-LFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGDKN------- 451
DN +K +G +FLVLYVDDILLAS D D L + K FLS +D+KD+G+ +
Sbjct: 1063 DNCIYAKFRKGKYIFLVLYVDDILLASSDKDLLAETKGFLSSNFDMKDMGEASYVLGIEI 1122
Query: 452 SQERSQRMLGLSQKSYIERILNKFNVQDCKSENASIV 562
++R + +LGLSQKSYIE +L ++N+ C + IV
Sbjct: 1123 HRDRQKGVLGLSQKSYIENVLKRYNMHKCNASPGPIV 1159
Score = 67.8 bits (164), Expect(4) = 6e-65
Identities = 35/64 (54%), Positives = 43/64 (67%), Gaps = 4/64 (6%)
Frame = +3
Query: 567 VKGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY----FI 734
VKGDK Q PKN YE+N MKS+ Y+S +GS+MYAQV TR D+AF +L RY I
Sbjct: 1159 VKGDKFGEYQCPKNQYEKNKMKSVPYASAIGSIMYAQVCTRPDLAFTTGMLGRYQKNPGI 1218
Query: 735 QSWK 746
+ WK
Sbjct: 1219 EHWK 1222
Score = 49.3 bits (116), Expect(4) = 6e-65
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGC 873
NPG +H VKKA+RYL+ TK L Y+ ++L + GY D D+ GC
Sbjct: 1215 NPGIEHWKAVKKALRYLQGTKGLMLTYRRSNSLQIVGYADADWGGC 1260
>gb|AHL77759.1| polyprotein [Prunus persica]
Length = 1363
Score = 115 bits (287), Expect(5) = 1e-63
Identities = 52/118 (44%), Positives = 84/118 (71%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
V + AG A++WK+ KQ ++STMQ EF++ YEAT+ IWLK F++ L +VD I +P+++
Sbjct: 1226 VFLFAGGAVAWKSVKQQNVSTSTMQAEFLAVYEATSIAIWLKNFMSVLRIVDSIQRPIQL 1285
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGL 1225
+ DNS A++F K NKRSS ++HL++K+L + ++ G + +I +D++I D L KGL
Sbjct: 1286 WNDNSAAVYFAKGNKRSSGLRHLQLKFLSAKEKIRDGFTTLDHIGTDSMIADPLNKGL 1343
Score = 76.6 bits (187), Expect(5) = 1e-63
Identities = 37/76 (48%), Positives = 54/76 (71%), Gaps = 7/76 (9%)
Frame = +2
Query: 332 LFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGDKN-------SQERSQRMLGLSQ 490
+F++LYVDDILLAS ++ L D K LS +++ DLG+ N S++R + +LGLSQ
Sbjct: 1031 IFMLLYVDDILLASSNLSLLHDTKRMLSNYFEMSDLGEANYVLGIEISRDRERGLLGLSQ 1090
Query: 491 KSYIERILNKFNVQDC 538
K YIERIL +FN+++C
Sbjct: 1091 KGYIERILKRFNMENC 1106
Score = 62.8 bits (151), Expect(5) = 1e-63
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGC 873
NPG H + KK +RYL++TK YKL+Y+ V+ L ++GY D DFAGC
Sbjct: 1170 NPGQQHWVAGKKVLRYLQRTKEYKLVYRRVEELKLEGYADADFAGC 1215
Score = 58.9 bits (141), Expect(5) = 1e-63
Identities = 30/55 (54%), Positives = 39/55 (70%)
Frame = +3
Query: 564 FVKGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY 728
F KGDKLS Q PK E+ M+ Y+S+VGSLMYAQV TR D+AF +++L R+
Sbjct: 1113 FSKGDKLSCDQSPKTEQEKLEMQDKPYASLVGSLMYAQVCTRPDLAFCISVLGRF 1167
Score = 22.7 bits (47), Expect(5) = 1e-63
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 298 QCIYLKTNGRKFI 336
+CIYLK +GR +I
Sbjct: 1019 ECIYLKFHGRHYI 1031
>emb|CDF77009.1| hypothetical transposable element-related protein, partial [Boechera
divaricarpa]
Length = 1350
Score = 119 bits (297), Expect(4) = 1e-63
Identities = 50/123 (40%), Positives = 89/123 (72%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
V ++AG AISW++AKQ++ ASSTM EF++ +EA+ Q +WLK F+T L +++ I +PLKI
Sbjct: 1214 VFLLAGGAISWRSAKQSLVASSTMAAEFVAVFEASNQGLWLKNFVTRLQILEGIERPLKI 1273
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
+ DN A+ ++ N+ ++ K + +K+L++ + ++ GDI I++I +++++ D LTKG+ P
Sbjct: 1274 YCDNKSAVLYSNKNRSTTKSKFIDIKFLVVQERIQSGDISIEHIGTNSMVADPLTKGIPP 1333
Query: 1232 TFF 1240
F
Sbjct: 1334 KVF 1336
Score = 74.7 bits (182), Expect(4) = 1e-63
Identities = 36/77 (46%), Positives = 56/77 (72%), Gaps = 7/77 (9%)
Frame = +2
Query: 332 LFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGDKN-------SQERSQRMLGLSQ 490
+FLVLYVDDILLA++DI+ L + K FL +++KDLG+ + ++R+Q +L LSQ
Sbjct: 1019 IFLVLYVDDILLATNDINMLHEIKNFLKDNFEMKDLGEASFVLGIQIIRDRNQGILRLSQ 1078
Query: 491 KSYIERILNKFNVQDCK 541
K+YI+++L +F + DCK
Sbjct: 1079 KNYIDKVLKRFGMHDCK 1095
Score = 61.6 bits (148), Expect(4) = 1e-63
Identities = 35/63 (55%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Frame = +3
Query: 570 KGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRYF----IQ 737
KGDK LSQ PK E M+ I Y+S VGSLMYAQV TR DIA+IV +L RY +
Sbjct: 1103 KGDKFCLSQCPKENLEIQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGVLGRYLSNPGLD 1162
Query: 738 SWK 746
WK
Sbjct: 1163 HWK 1165
Score = 60.5 bits (145), Expect(4) = 1e-63
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGCPNNSRRS 894
NPG DH K+ MRYL++TK+Y L Y+ DNL + GY D DFAGC +SR+S
Sbjct: 1158 NPGLDHWKAAKRVMRYLQRTKDYMLTYQRSDNLEIIGYSDSDFAGC-QDSRKS 1209
>gb|ABA95205.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1407
Score = 126 bits (317), Expect(4) = 3e-63
Identities = 55/123 (44%), Positives = 89/123 (72%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
+ +A A+SWK++KQ +TASSTMQ E+++CYEAT Q IWLK FI GL +VD ISKPLK+
Sbjct: 1268 IFTLARGAVSWKSSKQKVTASSTMQAEYVACYEATGQAIWLKNFIPGLRVVDSISKPLKL 1327
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
+ DN A+++ +NK S++ K++ +KY ++ ++++ I ++Y+++ ++ D LTK L P
Sbjct: 1328 YCDNKPAVYYASSNKSSASAKYIDIKYHVVKEMIQDQTISVEYMNTKLMLADPLTKDLPP 1387
Query: 1232 TFF 1240
F
Sbjct: 1388 AVF 1390
Score = 75.5 bits (184), Expect(4) = 3e-63
Identities = 39/96 (40%), Positives = 62/96 (64%), Gaps = 7/96 (7%)
Frame = +2
Query: 296 DNVYISKPMEGNLFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGDKN-------S 454
D +Y +FL+LYVDDILLAS++ + L + K FL+ +++KDLG+
Sbjct: 1061 DCIYAKFKESKFIFLILYVDDILLASNNRNMLLETKKFLASKFEMKDLGEATYVLGIEIY 1120
Query: 455 QERSQRMLGLSQKSYIERILNKFNVQDCKSENASIV 562
++RS +LGLSQK+YIE++L K+N+ +C + A I+
Sbjct: 1121 RDRSNGVLGLSQKAYIEKVLKKYNMHNCSASPAPIM 1156
Score = 64.3 bits (155), Expect(4) = 3e-63
Identities = 34/64 (53%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Frame = +3
Query: 567 VKGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY----FI 734
+KGDK Q PKN YE MKSI Y+S VGS+MYAQV TR D+AF+ +L RY +
Sbjct: 1156 MKGDKYGKFQCPKNEYEAAQMKSIPYASAVGSIMYAQVCTRPDLAFVTGMLGRYQSNPSL 1215
Query: 735 QSWK 746
+ WK
Sbjct: 1216 EHWK 1219
Score = 48.1 bits (113), Expect(4) = 3e-63
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGCPNNSR 888
NP +H + KK +RYL+ TK+ L Y+ +NL V GY D D AGC ++ +
Sbjct: 1212 NPSLEHWKLAKKTLRYLQGTKDLMLTYRKSENLEVIGYSDSDLAGCVDDKK 1262
>gb|PRQ34200.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 343
Score = 118 bits (296), Expect(4) = 6e-63
Identities = 62/124 (50%), Positives = 84/124 (67%), Gaps = 1/124 (0%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVD-FISKPLK 1048
V ++AG AI+WK+ KQT A+STM EFI+ YEAT Q +WLK F+ LVD IS+PLK
Sbjct: 205 VFMLAGGAIAWKSVKQTQIATSTMMAEFIAIYEATCQGLWLKNFLAQTKLVDSIISRPLK 264
Query: 1049 IFYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLA 1228
I YDNS A++FTKNNKRS+ KH+ +KY + + VK +++I I++ N + D TK L
Sbjct: 265 IHYDNSAAVYFTKNNKRSTNSKHIDLKYYSVRERVKHNELIIAKINTLNQLADPFTKPLT 324
Query: 1229 PTFF 1240
F
Sbjct: 325 IAAF 328
Score = 76.3 bits (186), Expect(4) = 6e-63
Identities = 38/76 (50%), Positives = 54/76 (71%), Gaps = 7/76 (9%)
Frame = +2
Query: 332 LFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGDKN-------SQERSQRMLGLSQ 490
+FLVLYVDDILLAS D LQ K FLS+ +D+KDLGD + +++RS+ +LGLSQ
Sbjct: 9 IFLVLYVDDILLASTDKGLLQQTKHFLSENFDMKDLGDASYVLGIEITRDRSKHLLGLSQ 68
Query: 491 KSYIERILNKFNVQDC 538
++YI ++L +F + C
Sbjct: 69 QAYISKVLKRFEMHTC 84
Score = 60.1 bits (144), Expect(4) = 6e-63
Identities = 26/45 (57%), Positives = 34/45 (75%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAG 870
NPG++H I KK +RYL+KTK Y L+Y+ V +L V+GY D DFAG
Sbjct: 148 NPGHEHWIAGKKVLRYLQKTKGYSLVYRRVKDLEVEGYSDADFAG 192
Score = 58.9 bits (141), Expect(4) = 6e-63
Identities = 29/53 (54%), Positives = 39/53 (73%)
Frame = +3
Query: 570 KGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY 728
KGDKL+ +Q PKN E+ MK+ YS +VGSL+YAQV TR D+A+ V +L R+
Sbjct: 93 KGDKLNKNQCPKNELEKEDMKTKPYSRLVGSLIYAQVCTRPDLAYAVGMLARF 145
>emb|CAN80145.1| hypothetical protein VITISV_015720 [Vitis vinifera]
Length = 712
Score = 97.1 bits (240), Expect(4) = 2e-62
Identities = 44/96 (45%), Positives = 66/96 (68%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
+ ++ G AISWK+ K ++ ASSTM EF++CY A+ Q WL+ I+ L +VD I P+ I
Sbjct: 617 IFMLXGGAISWKSVKXSLIASSTMYAEFVACYGASXQAXWLRNLISKLQVVDSIFXPIVI 676
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKK 1159
+ DN+ +F++KNNK S K +++KYL + DLVKK
Sbjct: 677 YCDNNAXVFYSKNNKISXXSKXMEIKYLXVKDLVKK 712
Score = 80.9 bits (198), Expect(4) = 2e-62
Identities = 40/94 (42%), Positives = 62/94 (65%), Gaps = 7/94 (7%)
Frame = +2
Query: 302 VYISKPMEGNLFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGD-------KNSQE 460
VY+ +F+VLY+DDILLAS D++ L D K LS +D+KDLG+ + ++
Sbjct: 412 VYMKVNGSKYIFMVLYIDDILLASSDVNLLNDTKRILSANFDMKDLGEAYFVLGIEIYRD 471
Query: 461 RSQRMLGLSQKSYIERILNKFNVQDCKSENASIV 562
RS+ +LGLSQ++YI R+L +FN+ CK+ + +V
Sbjct: 472 RSRNLLGLSQRAYINRVLKRFNMXTCKAGDVPVV 505
Score = 72.0 bits (175), Expect(4) = 2e-62
Identities = 37/54 (68%), Positives = 43/54 (79%)
Frame = +3
Query: 567 VKGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY 728
VKGDKLS Q PKN E++ MK+I Y+S +GSLMYAQV TR DIAFIVN+L RY
Sbjct: 505 VKGDKLSNEQCPKNDLEKDVMKTIPYASAIGSLMYAQVCTRPDIAFIVNVLGRY 558
Score = 62.0 bits (149), Expect(4) = 2e-62
Identities = 25/51 (49%), Positives = 36/51 (70%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGCPNNSR 888
NPG DH + KK MRYL++TK++ L+Y+ VDNL V G D +F GC ++ +
Sbjct: 561 NPGXDHWVXAKKVMRYLQRTKDFMLVYRRVDNLEVVGXXDSBFGGCSDDRK 611
>gb|PRQ52817.1| putative RNA-directed DNA polymerase [Rosa chinensis]
Length = 538
Score = 115 bits (289), Expect(4) = 3e-62
Identities = 54/124 (43%), Positives = 86/124 (69%)
Frame = +2
Query: 872 VLIIAGEAISWKTAKQTITASSTMQVEFISCYEATTQVIWLKKFITGLLLVDFISKPLKI 1051
+ ++AG A+SW++AKQT +STMQ EF++ +EATT +WL+ FI+GL +VD I++PL+I
Sbjct: 403 LFLLAGGAVSWRSAKQTCITTSTMQAEFVAVFEATTHALWLRNFISGLSVVDSIARPLRI 462
Query: 1052 FYDNSFAIFFTKNNKRSSAIKHLKVKYLIISDLVKKGDIMIKYIDSDNIIIDLLTKGLAP 1231
DN+ +FF+KN++ S K + ++YL + + V+K + I I + +I D LTKGL P
Sbjct: 463 HCDNTAVVFFSKNDRYSQGSKRINLEYLAMKEDVQKQRVSIVNIGTKLMIADPLTKGLGP 522
Query: 1232 TFFL 1243
F+
Sbjct: 523 KAFI 526
Score = 79.3 bits (194), Expect(4) = 3e-62
Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 7/93 (7%)
Frame = +2
Query: 302 VYISKPMEGNLFLVLYVDDILLASDDIDFLQDCKLFLSKTYDVKDLGDKN-------SQE 460
+Y+ +FL+LYVDDILLAS D+ L + K FLSK +++KD+G+ + ++
Sbjct: 198 IYLKVSGSKFIFLILYVDDILLASSDLGLLHETKNFLSKKFEMKDMGEASYVIGIEIFRD 257
Query: 461 RSQRMLGLSQKSYIERILNKFNVQDCKSENASI 559
RS+ +LGLSQK+YIER+L +F ++ C A I
Sbjct: 258 RSRGLLGLSQKAYIERVLERFGMEKCSPSIAPI 290
Score = 60.5 bits (145), Expect(4) = 3e-62
Identities = 31/53 (58%), Positives = 37/53 (69%)
Frame = +3
Query: 570 KGDKLSLSQRPKNVYERNFMKSILYSSVVGSLMYAQVYTRSDIAFIVNLLVRY 728
KGDK SL Q P+N ER M+ I Y+S VGSL+YAQ TR DI+F V +L RY
Sbjct: 292 KGDKFSLKQCPQNELERKGMERIPYASAVGSLVYAQTCTRPDISFAVGMLGRY 344
Score = 55.8 bits (133), Expect(4) = 3e-62
Identities = 26/46 (56%), Positives = 28/46 (60%)
Frame = +1
Query: 736 NPGNDH*IVVKKAMRYLEKTKNYKLIYKHVDNLVVQGYLDFDFAGC 873
NPG DH KK MRYL+ TK Y L Y+ DNL V GY D D GC
Sbjct: 347 NPGMDHWKATKKVMRYLQGTKEYMLTYRRSDNLEVVGYSDSDLGGC 392