BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00042762
         (1731 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY08678.1| DNA/RNA polymerases superfamily protein [Theobrom...   358   e-112
emb|CAA73042.1| polyprotein, partial [Ananas comosus]                 220   e-109
ref|XP_024035579.1| uncharacterized protein LOC112096381 [Citrus...   215   e-107
gb|EOY03326.1| DNA/RNA polymerases superfamily protein [Theobrom...   360   e-106
gb|OMO58913.1| reverse transcriptase [Corchorus capsularis]           217   e-106
gb|EOY00215.1| DNA/RNA polymerases superfamily protein [Theobrom...   231   e-106
emb|CAC44142.1| putative polyprotein, partial [Cicer arietinum]       214   e-103
ref|XP_012829796.1| PREDICTED: uncharacterized protein LOC105950...   224   e-103
gb|OMO65975.1| reverse transcriptase [Corchorus capsularis]           223   e-103
gb|OMO87331.1| Integrase, catalytic core [Corchorus capsularis]       228   e-103
gb|PRQ46594.1| putative nucleotidyltransferase, Ribonuclease H [...   218   e-103
gb|OMO55593.1| reverse transcriptase [Corchorus capsularis]           205   e-102
gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum ...   201   e-102
gb|EOY26510.1| DNA/RNA polymerases superfamily protein [Theobrom...   226   e-102
dbj|GAU42667.1| hypothetical protein TSUD_398730 [Trifolium subt...   217   e-102
dbj|GAU51017.1| hypothetical protein TSUD_411620 [Trifolium subt...   216   e-102
gb|AAT38724.1| Putative retrotransposon protein, identical [Sola...   200   e-101
dbj|GAU51141.1| hypothetical protein TSUD_240800 [Trifolium subt...   215   e-101
gb|PNX98730.1| retrotransposon protein, partial [Trifolium prate...   211   e-101
dbj|GAU47914.1| hypothetical protein TSUD_404670, partial [Trifo...   218   e-100

>gb|EOY08678.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 666

 Score =  358 bits (918), Expect = e-112
 Identities = 194/391 (49%), Positives = 252/391 (64%), Gaps = 30/391 (7%)
 Frame = +1

Query: 649  YDKVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQ 828
            + KVIAYAS QLK HE+NYP+++LE+A +VF LKIW+HYLYG T EI+TDH+SLKY F Q
Sbjct: 154  HGKVIAYASRQLKRHEQNYPIHNLEMAAIVFALKIWRHYLYGETCEIYTDHKSLKYIFQQ 213

Query: 829  KELNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVMAHLRVAPTEL--EWMXX 1002
            ++LN+R  RW+ELLKDYDCTI YHP KANVV DALSRK+ G +AH+ +    L  E    
Sbjct: 214  RDLNLRQRRWMELLKDYDCTILYHPGKANVVADALSRKSMGSLAHISIGRRSLVREIHSL 273

Query: 1003 XXXXXXXXXXEDY*EIA*RFVSAINHSKGQEA*VHLGFRGYDTVLEPAVCTRVSKRRIYG 1182
                      E    +A   V  I   K +EA     F     V++     +  K +++ 
Sbjct: 274  GDIGVRLEVAETNALLAHFRVRPILMDKIKEAQSKDEF-----VIKALEDPQGRKGKMFT 328

Query: 1183 RGTL-V*IFGTLIHHEDVQGSQELLLVSRH---------------------------EDV 1278
            +GT  V  +GT ++  D  G +  +L   H                            DV
Sbjct: 329  KGTDGVLRYGTRLYVPDGDGLRRKILEEAHMAAYVVHPGATKMYQDLKEVYWWEGLKRDV 388

Query: 1279 AAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVIVD 1458
            A ++ +CL CQQVKAEH+KP G LQ +P+PEWK EH+ MDFVTGLP++    DSIW++VD
Sbjct: 389  AEFVSKCLVCQQVKAEHQKPAGLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVD 448

Query: 1459 RLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAMGT 1638
            RLTKSAHF+ ++ TY   + AR+Y  EIVRLHGIP+SI+SDR  +FTS+F G LQ+A+GT
Sbjct: 449  RLTKSAHFLSVKTTYGAAQYARVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGT 508

Query: 1639 ELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            +L F+T +H QT+GQSERTIQTLEDMLRACV
Sbjct: 509  KLDFSTTFHPQTDGQSERTIQTLEDMLRACV 539


>emb|CAA73042.1| polyprotein, partial [Ananas comosus]
          Length = 871

 Score =  220 bits (561), Expect(3) = e-109
 Identities = 105/154 (68%), Positives = 127/154 (82%)
 Frame = +1

Query: 1270 EDVAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWV 1449
            +DV  ++ +CLTCQQVKAEH+ P G LQS+PIP WK E +TMDFVTGLP+SQ   D+IWV
Sbjct: 560  KDVGEFVAKCLTCQQVKAEHRVPAGKLQSLPIPVWKWEKITMDFVTGLPRSQAGHDAIWV 619

Query: 1450 IVDRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKA 1629
            IVDRLTKSAHFIPI  T++ ++LA++Y  EIVRLHG+P SI+SDRD RF S F  SLQ A
Sbjct: 620  IVDRLTKSAHFIPIHTTWTGERLAQVYLDEIVRLHGVPTSIVSDRDTRFVSHFWRSLQDA 679

Query: 1630 MGTELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            +GT L F+TA+H Q++GQSERTIQTLEDMLRACV
Sbjct: 680  LGTRLDFSTAFHPQSDGQSERTIQTLEDMLRACV 713



 Score =  157 bits (398), Expect(3) = e-109
 Identities = 77/116 (66%), Positives = 92/116 (79%), Gaps = 1/116 (0%)
 Frame = +1

Query: 652 DKVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQK 831
           DKVIAYAS QLKE+EKNYP +DLELA +VF LK+W+HYLYG   E++TDH+SLKY F+QK
Sbjct: 332 DKVIAYASRQLKEYEKNYPTHDLELAAVVFALKLWRHYLYGERCEVYTDHKSLKYLFTQK 391

Query: 832 ELNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVMA-HLRVAPTELEWM 996
           ELN+R  RW+ELLKDYD TI YHP KANVV DALSRK+   +A H+   P  +E M
Sbjct: 392 ELNLRQRRWLELLKDYDLTILYHPGKANVVADALSRKSMENLAMHVVTQPRLIEQM 447



 Score = 68.9 bits (167), Expect(3) = e-109
 Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
 Frame = +2

Query: 998  LAVMMAQSPLVQKIIEK*PDDLYLQSIIAK---GKRHEFT*DSEGMIQYWNQLCVP--ES 1162
            L  ++ Q  L+ +I EK   D+ LQ I  K   G   +FT D +G++++  ++CVP    
Sbjct: 463  LMTLVVQPTLLDRIKEKQASDVELQKIKGKMVDGCTGDFTLDGDGLMRFRGRICVPADSG 522

Query: 1163 VKEEFMDEAHWSRFSVHSYTTKMYKDLKNYYW*AGMK 1273
            +KE+ + EAH + +++H   TKMYKDLK  YW  G+K
Sbjct: 523  IKEDILQEAHRAPYAIHPGGTKMYKDLKLLYWWPGIK 559


>ref|XP_024035579.1| uncharacterized protein LOC112096381 [Citrus clementina]
          Length = 1747

 Score =  215 bits (547), Expect(3) = e-107
 Identities = 100/153 (65%), Positives = 128/153 (83%)
 Frame = +1

Query: 1273 DVAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVI 1452
            D+AA++ +CL CQQVK EH++  G LQ++PIP+WK EH+TMDFV+GLP S+   D IWVI
Sbjct: 668  DIAAFVSRCLVCQQVKIEHQRLAGTLQTLPIPQWKWEHITMDFVSGLPCSRRGCDCIWVI 727

Query: 1453 VDRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAM 1632
            VDRLTKSAHF+  + T ++ +LA+L+  EIVRLHG+PVSI+SDRDP FTS+F  SL K +
Sbjct: 728  VDRLTKSAHFLARKSTDNVGQLAKLFIKEIVRLHGVPVSIVSDRDPLFTSRFWASLHKEL 787

Query: 1633 GTELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            GT+LRF+TA+H +T+GQSERTIQTLEDMLRACV
Sbjct: 788  GTKLRFSTAFHPRTDGQSERTIQTLEDMLRACV 820



 Score =  168 bits (426), Expect(3) = e-107
 Identities = 77/106 (72%), Positives = 92/106 (86%)
 Frame = +1

Query: 649 YDKVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQ 828
           + KVIAYAS QLK HE+NYP +DLELA +VF LKIW+HYLYG T EIFT+H+SLKY F+Q
Sbjct: 438 HGKVIAYASRQLKNHEQNYPTHDLELAAIVFALKIWRHYLYGDTCEIFTNHKSLKYLFTQ 497

Query: 829 KELNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVMAHL 966
           KELN+R  RW+EL+KD+DC+INYHP KANVV DALSRK++G MAHL
Sbjct: 498 KELNLRQRRWLELVKDFDCSINYHPGKANVVADALSRKSSGCMAHL 543



 Score = 56.6 bits (135), Expect(3) = e-107
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
 Frame = +2

Query: 998  LAVMMAQSPLVQKIIEK*PDDLYLQSI---IAKGKRHEFT*DSEGMIQYWNQLCVP--ES 1162
            LA +  Q  L+ ++     +D+ L  I   ++KG +  F  D+   +    +LCVP  E 
Sbjct: 570  LAHLTVQPTLIDRVKVAQKNDIELNKIREDVSKGHKPGFRLDNGDGLWLGQRLCVPADEE 629

Query: 1163 VKEEFMDEAHWSRFSVHSYTTKMYKDLKNYYW*AGMK 1273
            +K E + EAH S +S+H  +TKMY+DLK  +W   MK
Sbjct: 630  LKAEILREAHESSYSMHPGSTKMYRDLKQSFWWRNMK 666


>gb|EOY03326.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1447

 Score =  360 bits (923), Expect = e-106
 Identities = 190/370 (51%), Positives = 249/370 (67%), Gaps = 9/370 (2%)
 Frame = +1

Query: 649  YDKVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQ 828
            + KVIAYAS QLK HE+NYP++DLE+A +VF LKIW+HYLYG T EI+TDH+SLKY F Q
Sbjct: 860  HGKVIAYASRQLKRHEQNYPIHDLEMAAIVFALKIWRHYLYGETCEIYTDHKSLKYIFQQ 919

Query: 829  KELNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVMAHLRVAPTELEWMXXXX 1008
            ++LN+R  RW+ELLKDYDCTI YHP KANVV DALSRK+ G +AH+ +    L       
Sbjct: 920  RDLNLRQCRWMELLKDYDCTILYHPGKANVVADALSRKSMGSLAHISIVRPIL-----MD 974

Query: 1009 XXXXXXXXEDY*EIA*RFVSAINHSKGQEA*VHLGFRGYDTVLEPAVCTRVS-----KRR 1173
                    +++       + A+   +G++    +  +G D VL       V      +R 
Sbjct: 975  KIKEAQSKDEF------VIKALEDPQGRKG--KMFTKGTDGVLRYGTRLYVPDGDGLRRE 1026

Query: 1174 IYGRGTLV*IFGTLIHHEDVQGSQELLLVSRHE----DVAAYIEQCLTCQQVKAEHKKPL 1341
            I     +      ++H    +  Q+L  V   E    DVA ++ +CL CQQVKAEH+KP 
Sbjct: 1027 ILEEAHMA---AYVVHPGATKMYQDLKEVYWWEGLKRDVAEFVSKCLVCQQVKAEHQKPA 1083

Query: 1342 GPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVIVDRLTKSAHFIPIRKTYSLDKLA 1521
            G LQ +P+PEWK EH+ MDFVTGLP++    DSIW++VDRLTKSAHF+P++ TY   + A
Sbjct: 1084 GLLQPLPVPEWKWEHIAMDFVTGLPRTSGGYDSIWIVVDRLTKSAHFLPVKTTYGAAQYA 1143

Query: 1522 RLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAMGTELRFNTAYHSQTNGQSERTIQ 1701
            R+Y  EIVRLHGIP+SI+SDR  +FTS+F G LQ+A+GT+L F+TA+H QT+GQSERTIQ
Sbjct: 1144 RVYVDEIVRLHGIPISIVSDRGAQFTSRFWGKLQEALGTKLDFSTAFHPQTDGQSERTIQ 1203

Query: 1702 TLEDMLRACV 1731
            TLE MLRACV
Sbjct: 1204 TLEAMLRACV 1213


>gb|OMO58913.1| reverse transcriptase [Corchorus capsularis]
          Length = 1477

 Score =  217 bits (553), Expect(3) = e-106
 Identities = 101/147 (68%), Positives = 123/147 (83%)
 Frame = +1

Query: 1288 IEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVIVDRLT 1467
            + QC+ CQQVK EH++P G LQ +PIPEWK EH+TMDFV+GLP+S    +S+WVIVDRLT
Sbjct: 1148 LAQCIVCQQVKVEHQRPAGQLQPLPIPEWKWEHITMDFVSGLPRSPRGHESVWVIVDRLT 1207

Query: 1468 KSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAMGTELR 1647
            KSAHFI ++  YSL+KLA LY  EIVRLHG+PVSI+SDRD RF ++F GSL KA+GT+L 
Sbjct: 1208 KSAHFIALKVGYSLEKLAALYVREIVRLHGVPVSIVSDRDSRFVAEFWGSLHKALGTKLN 1267

Query: 1648 FNTAYHSQTNGQSERTIQTLEDMLRAC 1728
            F+TA+H QT+GQSERTIQ LEDMLRAC
Sbjct: 1268 FSTAFHPQTDGQSERTIQILEDMLRAC 1294



 Score =  156 bits (395), Expect(3) = e-106
 Identities = 74/104 (71%), Positives = 86/104 (82%)
 Frame = +1

Query: 655  KVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQKE 834
            KV+AYAS QLK +E+NYP +DLELA +VF LKIW+HYLYG   EIFTDH+SLKY F+QKE
Sbjct: 916  KVVAYASRQLKPYERNYPTHDLELAAVVFALKIWRHYLYGEKCEIFTDHKSLKYIFTQKE 975

Query: 835  LNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVMAHL 966
            +NMR  RW+ELLKDYD TI+YHP KANVV DALSRK  G +A L
Sbjct: 976  INMRQRRWLELLKDYDLTISYHPGKANVVADALSRKNHGNLAAL 1019



 Score = 63.9 bits (154), Expect(3) = e-106
 Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
 Frame = +2

Query: 992  GCLAVMMAQSPLVQKIIEK*PDDLYLQSI---IAKGKRHEFT*DSEGMIQYWNQLCVPES 1162
            G LA +  Q  L+++I E    D  LQ +   I  G   +F    +G +++ ++LCVP  
Sbjct: 1044 GMLASLRIQPMLIERIKEAQLVDSALQKVRANIETGAPSDFRTHDDGSLRFGDRLCVPND 1103

Query: 1163 V--KEEFMDEAHWSRFSVHSYTTKMYKDLKNYYW*AGMK 1273
            V  K+  +DEAH+S ++VH   TKMY+DLK  YW   MK
Sbjct: 1104 VEIKKVVLDEAHYSGYTVHPGGTKMYRDLKETYWWNNMK 1142


>gb|EOY00215.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1537

 Score =  231 bits (590), Expect(3) = e-106
 Identities = 108/153 (70%), Positives = 132/153 (86%)
 Frame = +1

Query: 1273 DVAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVI 1452
            D+A ++ +CLTCQQ+KAEH+KP G LQ + IPEWK EHVTMDFV GLP++Q+  D+IWVI
Sbjct: 1134 DIAEFVAKCLTCQQIKAEHQKPSGTLQPLSIPEWKWEHVTMDFVLGLPRTQSGKDAIWVI 1193

Query: 1453 VDRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAM 1632
            VDRLTKSAHF+ I  TYS+++LARLY  EIVRLHG+PVSI+SDRD RFTS+F    Q+A+
Sbjct: 1194 VDRLTKSAHFLAIHSTYSIERLARLYIDEIVRLHGVPVSIVSDRDLRFTSRFWPKFQEAL 1253

Query: 1633 GTELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            GT+LRF+TA+H QT+GQSERTIQTLEDMLRACV
Sbjct: 1254 GTKLRFSTAFHPQTDGQSERTIQTLEDMLRACV 1286



 Score =  149 bits (376), Expect(3) = e-106
 Identities = 70/106 (66%), Positives = 85/106 (80%)
 Frame = +1

Query: 652  DKVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQK 831
            +KVIAYAS QLK+HE NYP +DLELA +VF LKIW+HYLYG    IF DH+SLKY  +QK
Sbjct: 905  EKVIAYASRQLKKHETNYPTHDLELATVVFALKIWRHYLYGERCRIFYDHKSLKYLLTQK 964

Query: 832  ELNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVMAHLR 969
            ELN+R  +W+EL+KDYD  I+YHP KANVV DALSRK++  +A LR
Sbjct: 965  ELNLRQRQWLELIKDYDLVIDYHPRKANVVADALSRKSSSSLATLR 1010



 Score = 56.2 bits (134), Expect(3) = e-106
 Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
 Frame = +2

Query: 998  LAVMMAQSPLVQKIIEK*PDDLYLQSIIAK---GKRHEFT*DSEGMIQYWNQLCVP--ES 1162
            LA  + +  L+ +I E    D +L+  + K   GK  EF    +G +   +++CVP  + 
Sbjct: 1036 LASFVVRPSLLNQIRELQKSDDWLKQEVQKLQDGKASEFRLSDDGTLMLRDRICVPKDDQ 1095

Query: 1163 VKEEFMDEAHWSRFSVHSYTTKMYKDLKNYYW*AGMK 1273
            ++   ++EAH+S +++H  +TKMY+ +K  YW  GM+
Sbjct: 1096 LRRAILEEAHYSAYALHPGSTKMYRTIKESYWWPGME 1132


>emb|CAC44142.1| putative polyprotein, partial [Cicer arietinum]
          Length = 655

 Score =  214 bits (545), Expect(3) = e-103
 Identities = 96/152 (63%), Positives = 126/152 (82%)
 Frame = +1

Query: 1276 VAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVIV 1455
            VA Y+  CLTCQ+ K EH++P G LQ + IPEWK + ++MDF+TGLPK++   DSIWVIV
Sbjct: 364  VAEYVSTCLTCQKAKVEHQRPAGMLQPLDIPEWKWDSISMDFITGLPKTRRKNDSIWVIV 423

Query: 1456 DRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAMG 1635
            DRLTKSAHF+P+R TY +D+L  +Y +EIVRLHG+P SI+SDRDP+FTS F G+L +A+G
Sbjct: 424  DRLTKSAHFLPVRTTYKVDQLTEIYIAEIVRLHGVPSSIVSDRDPKFTSHFWGALHEALG 483

Query: 1636 TELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            T+LR ++AYH QT+GQ+ERT Q+LED+LRACV
Sbjct: 484  TKLRLSSAYHPQTDGQTERTNQSLEDLLRACV 515



 Score =  155 bits (391), Expect(3) = e-103
 Identities = 71/113 (62%), Positives = 87/113 (76%)
 Frame = +1

Query: 649 YDKVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQ 828
           + KV+AYAS QLK HE+NYP +DLELA +VF LKIW+HYLYG TF +F+DH+SLKY F Q
Sbjct: 134 HKKVVAYASRQLKIHERNYPTHDLELAAVVFALKIWRHYLYGCTFTVFSDHKSLKYLFDQ 193

Query: 829 KELNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVMAHLRVAPTEL 987
           KELNMR  RW+E LKD+D T+ YHP KANVV DALSR++  V + +     EL
Sbjct: 194 KELNMRQRRWIETLKDFDFTLQYHPGKANVVADALSRRSVSVSSLIMARQQEL 246



 Score = 59.7 bits (143), Expect(3) = e-103
 Identities = 29/78 (37%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
 Frame = +2

Query: 1055 DDLYLQ---SIIAKGKRHEFT*DSEGMIQYWNQLCVPE--SVKEEFMDEAHWSRFSVHSY 1219
            DD+ +Q   ++I +GK  EF   ++ +++   ++CVPE  ++++  ++EAH S+ S+H  
Sbjct: 284  DDVLIQEKRNLIVQGKTTEFKIGADNVLRCNGRICVPEITAMRKTILEEAHKSKLSIHPG 343

Query: 1220 TTKMYKDLKNYYW*AGMK 1273
             TKMY+DL+  YW  GMK
Sbjct: 344  ATKMYQDLRQNYWWPGMK 361


>ref|XP_012829796.1| PREDICTED: uncharacterized protein LOC105950954 [Erythranthe guttata]
          Length = 1316

 Score =  224 bits (570), Expect(3) = e-103
 Identities = 106/154 (68%), Positives = 127/154 (82%)
 Frame = +1

Query: 1270 EDVAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWV 1449
            +D+A Y+ +CL CQQ+K EH++P G LQS  IPEWK E VTMDFV G PK+    DSIWV
Sbjct: 857  KDIAKYVSECLICQQIKTEHQRPGGLLQSNHIPEWKWESVTMDFVQGFPKTLKGSDSIWV 916

Query: 1450 IVDRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKA 1629
            IVDRLTKSAHF+P++ T+SL+KLA LY  EIVRLHG+P+SIISDRDPRFTS+F   L +A
Sbjct: 917  IVDRLTKSAHFLPVKTTFSLEKLAELYIGEIVRLHGVPISIISDRDPRFTSKFWKRLHEA 976

Query: 1630 MGTELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            MGT L F+TAYH QT+GQSERTI+TLEDMLRAC+
Sbjct: 977  MGTRLSFSTAYHPQTDGQSERTIKTLEDMLRACI 1010



 Score =  152 bits (385), Expect(3) = e-103
 Identities = 71/100 (71%), Positives = 83/100 (83%)
 Frame = +1

Query: 658 VIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQKEL 837
           VIAYAS QLK++E+NYP +DLELA +VF LKIW+HYLYG    IFTDH+SLKY F+QKEL
Sbjct: 664 VIAYASRQLKDYERNYPTHDLELAAVVFALKIWRHYLYGEKCSIFTDHKSLKYFFTQKEL 723

Query: 838 NMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVM 957
           NMR  RW+EL+KDYDC I YHPSKANVV DALSRK+   +
Sbjct: 724 NMRQRRWLELVKDYDCEILYHPSKANVVADALSRKSMSAL 763



 Score = 51.6 bits (122), Expect(3) = e-103
 Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
 Frame = +2

Query: 1079 IAKGKRHEFT*DSEGMIQYWNQLCVP--ESVKEEFMDEAHWSRFSVHSYTTKMYKDLKNY 1252
            +A G+   F+     ++++  ++C+P  + +K   +DEAH + +S H   TKMY+DLK  
Sbjct: 790  LATGQNPNFSMTDGKILKFQGRICIPANKEIKGLILDEAHKTPYSCHPGETKMYQDLKKL 849

Query: 1253 YW*AGMK 1273
            YW  GMK
Sbjct: 850  YWWPGMK 856


>gb|OMO65975.1| reverse transcriptase [Corchorus capsularis]
          Length = 868

 Score =  223 bits (569), Expect(3) = e-103
 Identities = 103/154 (66%), Positives = 129/154 (83%)
 Frame = +1

Query: 1270 EDVAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWV 1449
            +D+A ++ +CL CQQVKAEH+KP G LQ +PIPEWK EH+TMDF+ GLP+ +   D+IWV
Sbjct: 481  KDIAEFVSRCLVCQQVKAEHQKPAGTLQPLPIPEWKWEHITMDFIVGLPRIRRGHDAIWV 540

Query: 1450 IVDRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKA 1629
            IVDRLTKSAHF+ +R T+S ++LARLY +EIVRLHG+PVSI+ DRDPRFTS+F   LQ A
Sbjct: 541  IVDRLTKSAHFLLVRITFSTERLARLYVAEIVRLHGVPVSIVLDRDPRFTSRFWPKLQHA 600

Query: 1630 MGTELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            +GT L+F+TA+H QT+GQ ER IQTLEDMLRACV
Sbjct: 601  LGTRLKFSTAFHPQTDGQFERIIQTLEDMLRACV 634



 Score =  154 bits (390), Expect(3) = e-103
 Identities = 70/106 (66%), Positives = 87/106 (82%)
 Frame = +1

Query: 652 DKVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQK 831
           DKVIAYA  QLK+HE+NYP +DLELAV+VF LKIW+HYLYG   ++FTDH+SLKY  +QK
Sbjct: 254 DKVIAYAYRQLKKHEENYPTHDLELAVVVFALKIWRHYLYGAQRQVFTDHKSLKYLMTQK 313

Query: 832 ELNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVMAHLR 969
           ELN+R  RW+EL+KDYD  I+YHP K NVV DALSRK++  MA ++
Sbjct: 314 ELNLRQRRWLELIKDYDLVIDYHPGKTNVVTDALSRKSSTTMARIK 359



 Score = 50.1 bits (118), Expect(3) = e-103
 Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
 Frame = +2

Query: 998  LAVMMAQSPLVQKIIEK*PDDLYLQSIIAK---GKRHEFT*DSEGMIQYWNQLCVP--ES 1162
            LA    +  LV +I E    D  L + + K   G   E++   +G++Q + ++C P  E 
Sbjct: 384  LARFEVRPTLVDQIKELQEVDEKLSAELEKLYLGVPSEYSLRDDGVLQKFGRVCAPDNEE 443

Query: 1163 VKEEFMDEAHWSRFSVHSYTTKMYKDLKNYYW*AGMK 1273
            +K   ++EAH S +++H   TKMY+ ++  YW  GMK
Sbjct: 444  LKRAVLEEAHSSAYALHPGITKMYRTIRESYWWPGMK 480


>gb|OMO87331.1| Integrase, catalytic core [Corchorus capsularis]
          Length = 492

 Score =  228 bits (580), Expect(3) = e-103
 Identities = 102/154 (66%), Positives = 131/154 (85%)
 Frame = +1

Query: 1270 EDVAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWV 1449
            +D++ ++ +CL CQQVKAEH+KP G LQ +PIPEWK EH+T+DF+ GLP+++   D+IWV
Sbjct: 322  KDISEFVSRCLVCQQVKAEHQKPTGTLQPLPIPEWKWEHITLDFIVGLPRTRHGHDAIWV 381

Query: 1450 IVDRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKA 1629
            IVDRLTKSAHF+P+R T++  +LARLY +EIVRLHG+PVSI+SDRDPRFTS+F   LQ A
Sbjct: 382  IVDRLTKSAHFLPVRITFNTKRLARLYVAEIVRLHGVPVSIVSDRDPRFTSRFWPKLQHA 441

Query: 1630 MGTELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            +GT ++F+T +H QT GQSERTIQTLEDMLRACV
Sbjct: 442  LGTRIKFSTTFHPQTGGQSERTIQTLEDMLRACV 475



 Score =  151 bits (381), Expect(3) = e-103
 Identities = 69/106 (65%), Positives = 87/106 (82%)
 Frame = +1

Query: 652 DKVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQK 831
           +KVIAYAS QLK+HE+NYP +DLELA +VF LKIW+HYLYG   ++FTDH+SLKY  +QK
Sbjct: 95  NKVIAYASRQLKKHEENYPTHDLELAAVVFALKIWRHYLYGEQCQVFTDHKSLKYLMTQK 154

Query: 832 ELNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVMAHLR 969
           ELN+R  RW+EL+KDYD  I+YHP KANVV  ALSRK++  MA ++
Sbjct: 155 ELNLRQRRWLELIKDYDLVIDYHPGKANVVAVALSRKSSTTMARIK 200



 Score = 48.9 bits (115), Expect(3) = e-103
 Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
 Frame = +2

Query: 998  LAVMMAQSPLVQKIIEK*PDDLYLQSIIAK---GKRHEFT*DSEGMIQYWNQLCVP--ES 1162
            LA    +  LV +I +    D  L + + K   G   E++   +G++Q   ++CVP  E 
Sbjct: 225  LARFEVRPTLVDQIRDSQEVDEKLNAELEKLYLGMPSEYSLRDDGVLQKLGRVCVPDNEE 284

Query: 1163 VKEEFMDEAHWSRFSVHSYTTKMYKDLKNYYW*AGMK 1273
            +K   ++EAH S ++++  +TKMY+ ++  YW  GMK
Sbjct: 285  LKRAVLEEAHSSAYALYPGSTKMYRTIRESYWWPGMK 321


>gb|PRQ46594.1| putative nucleotidyltransferase, Ribonuclease H [Rosa chinensis]
          Length = 1571

 Score =  218 bits (555), Expect(3) = e-103
 Identities = 101/152 (66%), Positives = 128/152 (84%)
 Frame = +1

Query: 1273 DVAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVI 1452
            ++AA++ +CL CQQVKAE +KP G LQ +PIPEWK EH+TMDF+  LP++Q   D IWVI
Sbjct: 1186 EIAAFVSKCLVCQQVKAERQKPSGLLQPLPIPEWKWEHLTMDFIYKLPRTQDGNDGIWVI 1245

Query: 1453 VDRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAM 1632
            VDRLTKSAHF+ +++T+SLDKLA+LY  EIV+LHG+P SI+SDRD RFTS+F   + K M
Sbjct: 1246 VDRLTKSAHFLAVKETFSLDKLAKLYVDEIVKLHGVPESIVSDRDARFTSKFWRKVHKFM 1305

Query: 1633 GTELRFNTAYHSQTNGQSERTIQTLEDMLRAC 1728
            GT+L+F+TA+H QT+GQSERTIQTLEDMLRAC
Sbjct: 1306 GTKLQFSTAFHPQTDGQSERTIQTLEDMLRAC 1337



 Score =  149 bits (375), Expect(3) = e-103
 Identities = 68/113 (60%), Positives = 84/113 (74%)
 Frame = +1

Query: 649  YDKVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQ 828
            +  VIAYAS QLK HE NYP +DLELA +V  LK+W+HYLYG   +IFTDH+SLKY F+Q
Sbjct: 956  HGNVIAYASRQLKPHELNYPTHDLELAAIVLALKLWRHYLYGARCQIFTDHKSLKYVFTQ 1015

Query: 829  KELNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVMAHLRVAPTEL 987
              LN+R  RW+EL++DYDCTI YHP KANVV DALSR  +  +++LR     L
Sbjct: 1016 PNLNLRQRRWMELIEDYDCTIEYHPGKANVVADALSRNPSVTLSYLRATRVPL 1068



 Score = 60.5 bits (145), Expect(3) = e-103
 Identities = 34/87 (39%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
 Frame = +2

Query: 1028 VQKIIEK*PDDLYLQSI---IAKGKRHEFT*DSEGMIQYWNQLCVP--ESVKEEFMDEAH 1192
            + KI E  P D  ++ I   +  G + EF+   +G + +  +LCVP  E++K E +DEAH
Sbjct: 1098 IDKIREAQPLDPRIEGIKEGVRGGWQLEFSIRRDGTLMFGKRLCVPNVEALKREILDEAH 1157

Query: 1193 WSRFSVHSYTTKMYKDLKNYYW*AGMK 1273
             S +++H   TKMY+ LK YYW   MK
Sbjct: 1158 NSAYALHPGGTKMYRTLKEYYWWPNMK 1184


>gb|OMO55593.1| reverse transcriptase [Corchorus capsularis]
          Length = 1385

 Score =  205 bits (521), Expect(3) = e-102
 Identities = 93/143 (65%), Positives = 118/143 (82%)
 Frame = +1

Query: 1273 DVAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVI 1452
            ++  ++ QC+ CQQVK EH++P G LQ +PIPEWK EH+TMDFV+GLP+S    +S+WVI
Sbjct: 1024 EIGEFVAQCIVCQQVKVEHQRPAGQLQPLPIPEWKWEHITMDFVSGLPRSPRGHESVWVI 1083

Query: 1453 VDRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAM 1632
            VDRLTKSAHFI ++  YSL+KLA LY  EIVRLHG+PVSI+SDRD RF ++F GSL KA+
Sbjct: 1084 VDRLTKSAHFIALKVGYSLEKLAALYVQEIVRLHGVPVSIVSDRDSRFVAEFWGSLHKAL 1143

Query: 1633 GTELRFNTAYHSQTNGQSERTIQ 1701
            GT+L F+TA+H QT+GQSERTIQ
Sbjct: 1144 GTKLNFSTAFHPQTDGQSERTIQ 1166



 Score =  157 bits (397), Expect(3) = e-102
 Identities = 74/105 (70%), Positives = 87/105 (82%)
 Frame = +1

Query: 652  DKVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQK 831
            +KV+AYAS QLK +E+NYP +DLELA +VF LKIW+HYLYG   EIFTDH+SLKY F+QK
Sbjct: 795  EKVVAYASRQLKPYERNYPTHDLELAAVVFALKIWRHYLYGEKCEIFTDHKSLKYIFTQK 854

Query: 832  ELNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVMAHL 966
            E+NMR  RW+ELLKDYD TI+YHP KANVV DALSRK  G +A L
Sbjct: 855  EINMRQRRWLELLKDYDLTISYHPGKANVVADALSRKNHGNLAAL 899



 Score = 63.5 bits (153), Expect(3) = e-102
 Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
 Frame = +2

Query: 992  GCLAVMMAQSPLVQKIIEK*PDDLYLQSI---IAKGKRHEFT*DSEGMIQYWNQLCVPES 1162
            G LA +  Q  L+++I E    D  LQ +   I  G   +F    +G +++ ++LCVP  
Sbjct: 924  GMLASLRIQPTLIERIKEAQLVDSALQKVRANIETGVPSDFRIHDDGSLRFDDRLCVPND 983

Query: 1163 V--KEEFMDEAHWSRFSVHSYTTKMYKDLKNYYW*AGMK 1273
            V  K+  +DEAH+S ++VH   TKMY+DLK  YW   MK
Sbjct: 984  VEIKKVILDEAHYSGYTVHPGGTKMYRDLKETYWWNNMK 1022


>gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum demissum]
          Length = 1515

 Score =  201 bits (511), Expect(3) = e-102
 Identities = 92/152 (60%), Positives = 122/152 (80%)
 Frame = +1

Query: 1276 VAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVIV 1455
            +A ++ +C  CQQVK EH++P G  Q+I +PEWK E + MDF+TGLP+S+   DSIWVIV
Sbjct: 1206 IAEFVAKCPNCQQVKVEHQRPGGLAQNIELPEWKWEMINMDFITGLPRSRRQHDSIWVIV 1265

Query: 1456 DRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAMG 1635
            DR+TKSAHF+P+R T+S +  A+LY  EIVRLHG+P+SIISDR  +FT+QF  S QK +G
Sbjct: 1266 DRMTKSAHFLPVRTTHSAEDYAKLYIQEIVRLHGVPISIISDRGAQFTAQFWKSFQKGLG 1325

Query: 1636 TELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            +++  +TA+H QT+GQ+ERTIQTLEDMLRACV
Sbjct: 1326 SKVSLSTAFHPQTDGQAERTIQTLEDMLRACV 1357



 Score =  154 bits (388), Expect(3) = e-102
 Identities = 73/111 (65%), Positives = 87/111 (78%)
 Frame = +1

Query: 655  KVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQKE 834
            KVIAYAS QLK HEKNYP +DLELAV+VF LK+W+HYLYGV  +IFTDH+SL+Y  +QKE
Sbjct: 974  KVIAYASRQLKVHEKNYPTHDLELAVVVFALKLWRHYLYGVHVDIFTDHKSLQYVLTQKE 1033

Query: 835  LNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVMAHLRVAPTEL 987
            LN+R  RW+ELLKDYD +I YHP KANVV D+LSR + G   H+     EL
Sbjct: 1034 LNLRQRRWLELLKDYDLSILYHPGKANVVADSLSRLSMGSTTHIEEGRREL 1084



 Score = 69.7 bits (169), Expect(3) = e-102
 Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
 Frame = +2

Query: 992  GCLAVMMAQSPLVQKIIEK*PDD---LYLQSIIAKGKRHEFT*DSEGMIQYWNQLCVP-- 1156
            G      A+S L+ ++ EK   D   L L++ + K +   F    +G+++Y  +LCVP  
Sbjct: 1105 GIAVTSKAESSLMSEVKEKQDQDPILLELKANVQKQRVLAFEQGGDGVLRYQGRLCVPMV 1164

Query: 1157 ESVKEEFMDEAHWSRFSVHSYTTKMYKDLKNYYW*AGMK 1273
            + ++E  M+EAH SR+SVH  +TKMY+DL+ +YW  GMK
Sbjct: 1165 DGLQERVMEEAHSSRYSVHPGSTKMYRDLREFYWWNGMK 1203


>gb|EOY26510.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
          Length = 1290

 Score =  226 bits (577), Expect(3) = e-102
 Identities = 104/153 (67%), Positives = 130/153 (84%)
 Frame = +1

Query: 1273 DVAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVI 1452
            D+A ++ +CL CQQ+KAEH+K  G LQ +PIPEWK EHVTMDFV GLP++Q+  D+IWVI
Sbjct: 923  DIAEFVAKCLICQQIKAEHQKSSGTLQPLPIPEWKWEHVTMDFVLGLPRTQSGKDAIWVI 982

Query: 1453 VDRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAM 1632
            + RLTKSAHF+ I  TYS+++LARLY  E+VRLHG+PVSI+SDRDPRFTS+F    Q+A+
Sbjct: 983  MGRLTKSAHFLAIHSTYSIERLARLYIDEVVRLHGVPVSIVSDRDPRFTSRFWPKFQEAL 1042

Query: 1633 GTELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            GT+LRF+TA+H Q +GQSERTIQTLEDMLRACV
Sbjct: 1043 GTKLRFSTAFHPQIDGQSERTIQTLEDMLRACV 1075



 Score =  145 bits (365), Expect(3) = e-102
 Identities = 69/106 (65%), Positives = 83/106 (78%)
 Frame = +1

Query: 652  DKVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQK 831
            +KVIAYAS QL +HE NY  +DLELA +VF LKIW+HYLYG    IF DH+SLKY  +QK
Sbjct: 694  EKVIAYASRQLMKHETNYLTHDLELAAVVFALKIWRHYLYGERCRIFFDHKSLKYLLTQK 753

Query: 832  ELNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVMAHLR 969
            ELN+R  RW+EL+KDYD  I+YHP KANVV DALSRK++  +A LR
Sbjct: 754  ELNLRQRRWLELIKDYDLVIDYHPGKANVVTDALSRKSSSSLATLR 799



 Score = 52.8 bits (125), Expect(3) = e-102
 Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
 Frame = +2

Query: 998  LAVMMAQSPLVQKIIEK*PDDLYLQSIIAK---GKRHEFT*DSEGMIQYWNQLCVP--ES 1162
            LA  + +  L+ +I E    D +L+  + K   G+  EF    +G +   +++CVP  + 
Sbjct: 825  LASFVVRPSLLNQIRELQKFDDWLKQEVQKLQDGEASEFRLSDDGTLMLRDRICVPKDDQ 884

Query: 1163 VKEEFMDEAHWSRFSVHSYTTKMYKDLKNYYW*AGMK 1273
            ++   ++EAH S +++H  +TKMY+ +K  YW  GMK
Sbjct: 885  LRRAILEEAHSSAYALHPGSTKMYQTIKESYWWPGMK 921


>dbj|GAU42667.1| hypothetical protein TSUD_398730 [Trifolium subterraneum]
          Length = 1442

 Score =  217 bits (553), Expect(3) = e-102
 Identities = 98/153 (64%), Positives = 123/153 (80%)
 Frame = +1

Query: 1273 DVAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVI 1452
            ++A ++ +C+ CQQVK EH+KP GPLQ + IPEWK EH+TMDFVTGLP++Q   DSIWVI
Sbjct: 987  EIAEFVSRCIVCQQVKIEHQKPAGPLQPLEIPEWKWEHITMDFVTGLPRNQKGEDSIWVI 1046

Query: 1453 VDRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAM 1632
            VDRLTKSAHFI ++ TY   + A ++  EIV+LHG+P+SI+SDRDP FTS F  + QK M
Sbjct: 1047 VDRLTKSAHFIAVKSTYKASRYAEIFLEEIVKLHGVPLSIVSDRDPTFTSHFWRAFQKTM 1106

Query: 1633 GTELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            GT LR +T+ H QT+GQSERTIQTLEDMLRAC+
Sbjct: 1107 GTRLRMSTSNHPQTDGQSERTIQTLEDMLRACI 1139



 Score =  144 bits (362), Expect(3) = e-102
 Identities = 64/97 (65%), Positives = 79/97 (81%)
 Frame = +1

Query: 652  DKVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQK 831
            D V+AYAS QLK HE+NYP +DLELA ++F LKIW+H+LYGV F +++DH+SL+Y F QK
Sbjct: 812  DAVVAYASRQLKPHEENYPTHDLELAAIIFALKIWRHHLYGVQFALYSDHKSLRYLFDQK 871

Query: 832  ELNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRK 942
            ELNMR  RW+E LKD+D  +NYHP KANVV  ALSRK
Sbjct: 872  ELNMRQRRWMEYLKDFDFELNYHPGKANVVAAALSRK 908



 Score = 62.4 bits (150), Expect(3) = e-102
 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
 Frame = +2

Query: 1058 DLYLQSIIAKGKRHEFT*DSEGMIQYWNQLCVPES--VKEEFMDEAHWSRFSVHSYTTKM 1231
            D+ LQ  I K    EFT   +G+IQ+ +++CVP    +K   ++EAH S FS+H  +TKM
Sbjct: 915  DMDLQRRIGKP---EFTVADDGVIQFGSRICVPNDADLKRSILEEAHKSGFSIHPGSTKM 971

Query: 1232 YKDLKNYYW*AGMK 1273
            Y DLKN YW   MK
Sbjct: 972  YHDLKNNYWWPNMK 985


>dbj|GAU51017.1| hypothetical protein TSUD_411620 [Trifolium subterraneum]
          Length = 1504

 Score =  216 bits (551), Expect(3) = e-102
 Identities = 100/154 (64%), Positives = 125/154 (81%)
 Frame = +1

Query: 1270 EDVAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWV 1449
            + +A Y++ CL CQ+ K EH KP G LQS+ IPEWK + + MDFVT LPK+Q   D+IWV
Sbjct: 1117 KQIAEYVQSCLVCQKAKIEHHKPAGLLQSLDIPEWKWDGIAMDFVTALPKTQKKFDAIWV 1176

Query: 1450 IVDRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKA 1629
            I+DRLTKSAHFIPI +TYSL++LA++Y  EIVRLHGIP SI+SDRDPRFTS+F   L   
Sbjct: 1177 IIDRLTKSAHFIPINQTYSLERLAQIYVKEIVRLHGIPASIVSDRDPRFTSKFWHQLHLE 1236

Query: 1630 MGTELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            +GT+LR ++AYH QT+GQSERTIQ+LED+LRACV
Sbjct: 1237 LGTKLRLSSAYHPQTDGQSERTIQSLEDLLRACV 1270



 Score =  148 bits (374), Expect(3) = e-102
 Identities = 68/97 (70%), Positives = 78/97 (80%)
 Frame = +1

Query: 655  KVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQKE 834
            KVIAYAS QLK HE+NYP +DLELA +VF LKIW+HYLYG  F + +DH+SLKY F QK+
Sbjct: 891  KVIAYASRQLKTHERNYPTHDLELAAIVFALKIWRHYLYGSKFTVLSDHKSLKYLFDQKD 950

Query: 835  LNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKT 945
            LNMR  RW+E LKDYD  + YHP KANVV DALSRKT
Sbjct: 951  LNMRQRRWMEFLKDYDFELQYHPGKANVVADALSRKT 987



 Score = 58.2 bits (139), Expect(3) = e-102
 Identities = 31/97 (31%), Positives = 59/97 (60%), Gaps = 5/97 (5%)
 Frame = +2

Query: 998  LAVMMAQSPLVQKIIEK*PDDLYLQSI---IAKGKRHEFT*DSEGMIQYWNQLCVPES-- 1162
            L  ++  + L+Q I E+   D +L++I   +  G+  +F   ++G++++  +LCVP++  
Sbjct: 1020 LGTLVVSNELLQWIKEEQQTDEHLRNIKGMVNDGQGGDFYIGNDGILRFQGRLCVPQNLE 1079

Query: 1163 VKEEFMDEAHWSRFSVHSYTTKMYKDLKNYYW*AGMK 1273
            +++  ++E H  + S H  TTKMY+DLK  +W  GMK
Sbjct: 1080 IQKLILEEGHEGKLSFHPGTTKMYQDLKKTFWWFGMK 1116


>gb|AAT38724.1| Putative retrotransposon protein, identical [Solanum demissum]
          Length = 1602

 Score =  200 bits (508), Expect(3) = e-101
 Identities = 91/152 (59%), Positives = 122/152 (80%)
 Frame = +1

Query: 1276 VAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVIV 1455
            +A ++ +C  CQQVK EH++P G  Q+I +PEWK E + MDF+TGLP+S+   DSIWVIV
Sbjct: 1212 IAEFVAKCPNCQQVKVEHQRPGGLAQNIELPEWKWEMINMDFITGLPRSRRQHDSIWVIV 1271

Query: 1456 DRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAMG 1635
            DR+TKSAHF+P++ T+S +  A+LY  EIVRLHG+P+SIISDR  +FT+QF  S QK +G
Sbjct: 1272 DRMTKSAHFLPVKTTHSAEDYAKLYIQEIVRLHGVPISIISDRGAQFTAQFWKSFQKGLG 1331

Query: 1636 TELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            +++  +TA+H QT+GQ+ERTIQTLEDMLRACV
Sbjct: 1332 SKVSLSTAFHPQTDGQAERTIQTLEDMLRACV 1363



 Score =  151 bits (382), Expect(3) = e-101
 Identities = 72/111 (64%), Positives = 86/111 (77%)
 Frame = +1

Query: 655  KVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQKE 834
            KVIAYAS QLK HEKNYP +DLELAV+VF LK+W+HYLYGV  +IFTDH+SL+Y  +QK 
Sbjct: 980  KVIAYASRQLKVHEKNYPTHDLELAVVVFALKLWRHYLYGVHVDIFTDHKSLQYVLTQKA 1039

Query: 835  LNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRKTAGVMAHLRVAPTEL 987
            LN+R  RW+ELLKDYD +I YHP KANVV D+LSR + G   H+     EL
Sbjct: 1040 LNLRQRRWLELLKDYDLSILYHPGKANVVADSLSRLSMGSTTHIEEGRREL 1090



 Score = 69.7 bits (169), Expect(3) = e-101
 Identities = 38/99 (38%), Positives = 60/99 (60%), Gaps = 5/99 (5%)
 Frame = +2

Query: 992  GCLAVMMAQSPLVQKIIEK*PDD---LYLQSIIAKGKRHEFT*DSEGMIQYWNQLCVP-- 1156
            G      A+S L+ ++ EK   D   L L++ + K +   F    +G+++Y  +LCVP  
Sbjct: 1111 GIAVTSKAESSLMSEVKEKQDQDPILLELKANVQKQRVLAFEQGGDGVLRYQGRLCVPMV 1170

Query: 1157 ESVKEEFMDEAHWSRFSVHSYTTKMYKDLKNYYW*AGMK 1273
            + ++E  M+EAH SR+SVH  +TKMY+DL+ +YW  GMK
Sbjct: 1171 DGLQERVMEEAHSSRYSVHPGSTKMYRDLREFYWWNGMK 1209


>dbj|GAU51141.1| hypothetical protein TSUD_240800 [Trifolium subterraneum]
          Length = 1236

 Score =  215 bits (548), Expect(3) = e-101
 Identities = 98/153 (64%), Positives = 122/153 (79%)
 Frame = +1

Query: 1273 DVAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVI 1452
            ++A ++ +C+ CQQVK EH+KP GPLQ + IPEWK EH+TMD VTGLP++Q   DSIWVI
Sbjct: 783  EIAEFVSRCIVCQQVKIEHQKPAGPLQPLEIPEWKWEHITMDVVTGLPRNQKGEDSIWVI 842

Query: 1453 VDRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAM 1632
            VDRLTKSAHFI ++ TY   + A ++  EIV+LHG+PVSI+SDRDP FTS F  + QK M
Sbjct: 843  VDRLTKSAHFIVVKSTYKASRYAEIFLEEIVKLHGVPVSIVSDRDPTFTSHFWRAFQKTM 902

Query: 1633 GTELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            GT LR +T+ H QT+GQSERTIQTLEDMLRAC+
Sbjct: 903  GTRLRMSTSNHPQTDGQSERTIQTLEDMLRACI 935



 Score =  145 bits (365), Expect(3) = e-101
 Identities = 64/95 (67%), Positives = 79/95 (83%)
 Frame = +1

Query: 658 VIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQKEL 837
           V+AYAS QLK HE+NYP +DLELA ++F LKIW+H+LYGV F +++DH+SL+Y F QKEL
Sbjct: 610 VVAYASRQLKPHEENYPTHDLELAAIIFALKIWRHHLYGVQFALYSDHKSLRYLFDQKEL 669

Query: 838 NMR*HRWVELLKDYDCTINYHPSKANVVVDALSRK 942
           NMR  RW+E LKD+D  +NYHP KANVV DALSRK
Sbjct: 670 NMRQRRWMEYLKDFDFELNYHPGKANVVADALSRK 704



 Score = 60.1 bits (144), Expect(3) = e-101
 Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +2

Query: 1058 DLYLQSIIAKGKRHEFT*DSEGMIQYWNQLCVPES--VKEEFMDEAHWSRFSVHSYTTKM 1231
            D+ LQ  I K    EFT   +G+IQ+ +++CVP    +K   ++EAH S FS+H  +TKM
Sbjct: 711  DMDLQRRIGKP---EFTVADDGVIQFGSRICVPNDADLKRSILEEAHKSGFSIHPGSTKM 767

Query: 1232 YKDLKNYYW*AGMK 1273
            Y DLK  YW   MK
Sbjct: 768  YHDLKKNYWWPNMK 781


>gb|PNX98730.1| retrotransposon protein, partial [Trifolium pratense]
          Length = 1063

 Score =  211 bits (537), Expect(3) = e-101
 Identities = 98/153 (64%), Positives = 123/153 (80%)
 Frame = +1

Query: 1273 DVAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVI 1452
            D+A ++ QCL CQQVK EH++P G LQ + IPEWK E ++MDFVTGLP++Q   DSIWVI
Sbjct: 679  DIAEFVAQCLVCQQVKIEHQRPGGMLQPLEIPEWKWEKISMDFVTGLPRTQKGHDSIWVI 738

Query: 1453 VDRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAM 1632
            VDRLTKSAHFI ++ TY+  +LA ++  EIVRLHGIPVSI+SDRDP+FTS F G   +A+
Sbjct: 739  VDRLTKSAHFISVKATYTAPRLAEIFIEEIVRLHGIPVSIVSDRDPKFTSSFWGVFHQAL 798

Query: 1633 GTELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            GT L  +T+ H QT+GQ+ERTIQTLEDMLRAC+
Sbjct: 799  GTRLNLSTSNHPQTDGQTERTIQTLEDMLRACI 831



 Score =  151 bits (382), Expect(3) = e-101
 Identities = 70/106 (66%), Positives = 85/106 (80%), Gaps = 3/106 (2%)
 Frame = +1

Query: 655 KVIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQKE 834
           KV+AYAS QLK HE+NYP +DLELA +VF LK+W+H+LYGV FE+F+DH+SLKY F QKE
Sbjct: 458 KVVAYASRQLKSHEENYPTHDLELAAIVFGLKVWRHHLYGVQFEVFSDHKSLKYLFDQKE 517

Query: 835 LNMR*HRWVELLKDYDCTINYHPSKANVVVDALSRK---TAGVMAH 963
           LNMR  RW+E +KDYD  + YHP KANVV DALSRK   T+ +M H
Sbjct: 518 LNMRQRRWMEFIKDYDFELKYHPGKANVVADALSRKALHTSKLMMH 563



 Score = 57.8 bits (138), Expect(3) = e-101
 Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
 Frame = +2

Query: 1025 LVQKIIEK*PDDLYLQSIIAKGKRHEFT*DSEGMIQYWNQLCVPES--VKEEFMDEAHWS 1198
            L ++I E    D+ LQS +    R EFT  ++G+I +  ++CVP    +K+  ++EAH S
Sbjct: 596  LKRRIGEAQLTDMDLQSRLG---RPEFTQAADGVILFEGRMCVPNDAELKKMILEEAHKS 652

Query: 1199 RFSVHSYTTKMYKDLKNYYW*AGMK 1273
             F++H  +TKMY DLK  +W  GMK
Sbjct: 653  SFTIHPGSTKMYHDLKKDFWWPGMK 677


>dbj|GAU47914.1| hypothetical protein TSUD_404670, partial [Trifolium subterraneum]
          Length = 1054

 Score =  218 bits (556), Expect(3) = e-100
 Identities = 100/153 (65%), Positives = 124/153 (81%)
 Frame = +1

Query: 1273 DVAAYIEQCLTCQQVKAEHKKPLGPLQSIPIPEWK*EHVTMDFVTGLPKSQTSLDSIWVI 1452
            ++A ++ +C+ CQQVK EH+KP GPLQ + IPEWK EH+TMDFVTGLP++Q   DSIWVI
Sbjct: 619  EIAEFVSRCIVCQQVKIEHQKPAGPLQPLDIPEWKWEHITMDFVTGLPRNQKGEDSIWVI 678

Query: 1453 VDRLTKSAHFIPIRKTYSLDKLARLYCSEIVRLHGIPVSIISDRDPRFTSQF*GSLQKAM 1632
            VDRLTKSAHFI ++ TY   + A ++  EIV+LHG+P+SI+SDRDP FTS F  + QKAM
Sbjct: 679  VDRLTKSAHFIAVKSTYKASRYAEIFLEEIVKLHGVPLSIMSDRDPTFTSHFWRAFQKAM 738

Query: 1633 GTELRFNTAYHSQTNGQSERTIQTLEDMLRACV 1731
            GT LR +T+ H QT+GQSERTIQTLEDMLRACV
Sbjct: 739  GTRLRMSTSNHPQTDGQSERTIQTLEDMLRACV 771



 Score =  143 bits (361), Expect(3) = e-100
 Identities = 63/95 (66%), Positives = 78/95 (82%)
 Frame = +1

Query: 658 VIAYASHQLKEHEKNYPVYDLELAVLVFTLKIWQHYLYGVTFEIFTDHQSLKYSFSQKEL 837
           V+AYAS QLK HE+NYP +DLE A ++F LKIW+H+LYGV F +++DH+SL+Y F QKEL
Sbjct: 446 VVAYASRQLKPHEENYPTHDLEFAAIIFALKIWRHHLYGVQFALYSDHKSLRYLFDQKEL 505

Query: 838 NMR*HRWVELLKDYDCTINYHPSKANVVVDALSRK 942
           NMR  RW+E LKD+D  +NYHP KANVV DALSRK
Sbjct: 506 NMRQRRWMEYLKDFDFELNYHPGKANVVADALSRK 540



 Score = 55.8 bits (133), Expect(3) = e-100
 Identities = 33/74 (44%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = +2

Query: 1058 DLYLQSIIAKGKRHEFT*DSEGMIQYWNQLCVPES--VKEEFMDEAHWSRFSVHSYTTKM 1231
            D+ LQ  I K    EFT  ++G+IQ+ N++ VP    +K   ++EAH S FS+H  +TKM
Sbjct: 547  DMDLQRRIGKP---EFTVANDGVIQFGNRIYVPNDADLKWLILEEAHKSGFSIHPGSTKM 603

Query: 1232 YKDLKNYYW*AGMK 1273
            Y DLK  YW   MK
Sbjct: 604  YHDLKKNYWWPNMK 617