BLASTX nr result

ID: Cheilocostus21_contig00042366 seq

BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cheilocostus21_contig00042366
         (474 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           149,584,005 sequences; 54,822,741,787 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_009385173.1| PREDICTED: putative E3 ubiquitin-protein lig...    64   8e-09

>ref|XP_009385173.1| PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Musa
           acuminata subsp. malaccensis]
          Length = 906

 Score = 63.9 bits (154), Expect = 8e-09
 Identities = 43/104 (41%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
 Frame = -1

Query: 444 KSKPRSGTVIYGRSKTAASRNERSGFELERRPREDSQRDGGIKSGKSNPSIRDAGTRAVI 265
           K K RS  V Y +S T   + E   FE++ +P                 +I DA T+AV+
Sbjct: 39  KGKARSHEVAYEKSNTVTLQEEAVCFEVDMQP-----------------AICDASTQAVV 81

Query: 264 SILTYHVETFSGDHRFRASLHRAFNACLGKNGD-GAFAKLEQAI 136
           SILT +VE F     FRASL R  NACLG   + G FA+LE+AI
Sbjct: 82  SILTGYVEAFLKHESFRASLRRRCNACLGIASELGVFAELEEAI 125


Top